RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10286
(748 letters)
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo
sapiens}
Length = 302
Score = 372 bits (957), Expect = e-124
Identities = 109/274 (39%), Positives = 156/274 (56%), Gaps = 3/274 (1%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
A ++ +VE +D RW + R R G+ M ++A GG+NGS R+ TV+ +DP
Sbjct: 25 APKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDP 84
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
V+ W V+ M +RS +GAA LN LY GG+DG + L++VE Y ++W V M
Sbjct: 85 VKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNT 144
Query: 592 HRSAGGVIAFDSYVYALGGHDGLS--IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649
RS+ GV +YA+GG+D S +VE Y+ T+EWT + M T+R GV LN
Sbjct: 145 RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLN 204
Query: 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS 709
N +Y GG+DG + +SVE+YDP T+ W+ +A MN+ R + A G L+ +GG DG
Sbjct: 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSC 264
Query: 710 NLPTVEVYDPSTDSWAFVAP-MCAHEGGVGVGVI 742
NL +VE Y+P+TD W V+ M GV VI
Sbjct: 265 NLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVI 298
Score = 306 bits (786), Expect = 8e-99
Identities = 86/250 (34%), Positives = 134/250 (53%), Gaps = 3/250 (1%)
Query: 496 SM-LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554
SM +R+R+ + +L G + + +VE +D W++V+ + +R G +
Sbjct: 1 SMSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM 60
Query: 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGL 614
++ GG++G + TV+ Y+P KDQW V +M+ RS G + +YA+GG DG
Sbjct: 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGS 120
Query: 615 SIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDP 672
+ SVE Y+ K++EW V PM T+R +GV + +Y GGYD A L +VE Y+
Sbjct: 121 TGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNA 180
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
T+EW IA M+ RS + L+A+GG+DG +VEVYDP+T++W VA M
Sbjct: 181 TTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNM 240
Query: 733 HEGGVGVGVI 742
GV +
Sbjct: 241 CRRNAGVCAV 250
Score = 226 bits (578), Expect = 2e-68
Identities = 73/234 (31%), Positives = 103/234 (44%), Gaps = 43/234 (18%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEV 481
G ++AVGG + LS+VE ++
Sbjct: 109 GLLYAVGGFDGST-GLSSVEAYNI------------------------------------ 131
Query: 482 FDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGS--ERLSTVEEFDPVRRVWNKV 539
W M+ RS VGV V+ LYA GGY+ + + LSTVE ++ W +
Sbjct: 132 ---KSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI 188
Query: 540 SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI 599
+ M +RS G LN+ LY GG+DG +VE Y+P + WR V M R GV
Sbjct: 189 AEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC 248
Query: 600 AFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP-MLTKRCRLGVAALNNKI 652
A + +Y +GG DG SVE Y+P TD+WT V M T R GV ++ ++
Sbjct: 249 AVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
Score = 123 bits (312), Expect = 2e-31
Identities = 49/171 (28%), Positives = 69/171 (40%), Gaps = 22/171 (12%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAG-DSLSTVEVFDPLVGRWQMAEEETL 458
M RR + V G ++AVGG A LSTVE ++ W E +
Sbjct: 142 MNTRRSSVGV--GV------VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE--M 191
Query: 459 SN-----AVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMK 508
S V + L +VEV+DP W+ M+M R GV +
Sbjct: 192 STRRSGAGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVN 251
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRSAVGAAALNDKL 558
LY GG +GS L++VE ++P W VS M RS G ++ +L
Sbjct: 252 GLLYVVGGDDGSCNLASVEYYNPTTDKWTVVSSCMSTGRSYAGVTVIDKRL 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway,
protein-binding, UBI degradation, UBL conjugation
pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Length = 301
Score = 370 bits (952), Expect = e-123
Identities = 114/274 (41%), Positives = 151/274 (55%), Gaps = 3/274 (1%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
+ VE +DP W +++ R V + +R+Y GGY+G RLS+VE D
Sbjct: 26 QQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDY 85
Query: 532 V---RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
VW V+PM +R GA L D +YV GG+DG ++E Y+P+ DQW ++
Sbjct: 86 TADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGD 145
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
MQ R G++ +Y LGG+DGL+I +SVE+YDP T WT+V PM TKR GVA L
Sbjct: 146 MQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
N+ IYV GG+DG L SVE Y+ TD W + SM R V G+L+AI GYDG
Sbjct: 206 NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGN 265
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
S L ++E YDP DSW V M GV V+
Sbjct: 266 SLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 306 bits (785), Expect = 1e-98
Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 5/253 (1%)
Query: 494 AMSMLRSRVGVAVMKNRLYAFGGYNGSER-LSTVEEFDPVRRVWNKVSPMCFKRSAVGAA 552
+M R+R + + L GG+ + + VE++DP + W+ + + KR V +
Sbjct: 1 SMQGPRTRARLGANE-VLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASV 59
Query: 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQ---WRIVKSMQKHRSAGGVIAFDSYVYALG 609
+L+D++YV GGYDG S L++VEC + D+ W V M R G +Y G
Sbjct: 60 SLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIYVSG 119
Query: 610 GHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
G DG S+ERYDP D+W+ + M T R G+ + IY GGYDG L SVE
Sbjct: 120 GFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEK 179
Query: 670 YDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729
YDP T W + M RS + ++ +GG+DG ++L +VE Y+ TDSW V
Sbjct: 180 YDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS 239
Query: 730 MCAHEGGVGVGVI 742
M VG V+
Sbjct: 240 MTTPRCYVGATVL 252
Score = 251 bits (642), Expect = 1e-77
Identities = 82/263 (31%), Positives = 116/263 (44%), Gaps = 24/263 (9%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPL---VGRWQ----M 452
+ +R +A + I+ +GG LS+VE D G W M
Sbjct: 49 ITRKRRYVA--------SVSLHDRIYVIGG-YDGRSRLSSVECLDYTADEDGVWYSVAPM 99
Query: 453 AEE-ETLSNAVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAV 506
+ + +++E +DP + +W M M R G+ V
Sbjct: 100 NVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV 157
Query: 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDG 566
+Y GGY+G L++VE++DP W V+PM KRS G A LND +YV GG+DG
Sbjct: 158 ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDG 217
Query: 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
+ L++VE Y D W V SM R G +YA+ G+DG S+ S+E YDP
Sbjct: 218 TAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPI 277
Query: 627 TDEWTSVKPMLTKRCRLGVAALN 649
D W V M T+RC GV L
Sbjct: 278 IDSWEVVTSMGTQRCDAGVCVLR 300
Score = 125 bits (316), Expect = 6e-32
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 21/167 (12%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLS 459
M R + G I+ +GG + L++VE +DP G W ++
Sbjct: 146 MQTAREGAGL--VV---AS---GVIYCLGGYD-GLNILNSVEKYDPHTGHWTNVTP--MA 194
Query: 460 NA-----VISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN 509
V + LS+VE ++ W +M+ R VG V++
Sbjct: 195 TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRG 254
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556
RLYA GY+G+ LS++E +DP+ W V+ M +R G L +
Sbjct: 255 RLYAIAGYDGNSLLSSIECYDPIIDSWEVVTSMGTQRCDAGVCVLRE 301
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 368 bits (947), Expect = e-122
Identities = 101/273 (36%), Positives = 149/273 (54%), Gaps = 4/273 (1%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEE 528
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++
Sbjct: 35 RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 94
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
++P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V
Sbjct: 95 YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP 154
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
M R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L
Sbjct: 155 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
+N IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 274
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
+ L +VE YDP TD+W+ V M + GVGV V
Sbjct: 275 TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 302 bits (775), Expect = 4e-97
Identities = 92/258 (35%), Positives = 133/258 (51%), Gaps = 6/258 (2%)
Query: 489 WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA 548
+ + R V +Y GGY + LS +E ++P W +++ + RS
Sbjct: 6 HHHHSSGLVPRGSHAPKV-GRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSG 63
Query: 549 VGAAALNDKLYVCGGY----DGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY 604
+ + LY GG DG + + ++CY P +QW M R+ GV D +
Sbjct: 64 LAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGH 123
Query: 605 VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL 664
+YA+GG G +SVERY+P+ DEW V PMLT+R +GVA LN +Y GG+DG L
Sbjct: 124 IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRL 183
Query: 665 QSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724
S E Y P +EW+MI +MN +RS + ++A GGYDG L +VE YD T++W
Sbjct: 184 NSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETW 243
Query: 725 AFVAPMCAHEGGVGVGVI 742
FVAPM +G+ V
Sbjct: 244 TFVAPMKHRRSALGITVH 261
Score = 226 bits (578), Expect = 3e-68
Identities = 75/225 (33%), Positives = 105/225 (46%), Gaps = 40/225 (17%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEV 481
GHI+AVGG ++VE ++P
Sbjct: 122 GHIYAVGGSHGCI-HHNSVERYEP------------------------------------ 144
Query: 482 FDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP 541
W + M R VGVAV+ LYA GG++G+ RL++ E + P R W ++
Sbjct: 145 ---ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 201
Query: 542 MCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601
M RS G L++ +Y GGYDG LN+VE Y+ + + W V M+ RSA G+
Sbjct: 202 MNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 261
Query: 602 DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA 646
+Y LGG+DG + DSVE YDP TD W+ V M + R +GVA
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 306
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural
genomics, structur genomics consortium, SGC, kelch
repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Length = 306
Score = 360 bits (925), Expect = e-119
Identities = 73/279 (26%), Positives = 119/279 (42%), Gaps = 7/279 (2%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV 532
G + F+P W R N +Y GG + ++ ++ V
Sbjct: 20 GSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLF-PIKRMDCYNVV 78
Query: 533 RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQK 591
+ W R ++ A A K+Y GG + G S+L ECY+ + W SM
Sbjct: 79 KDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT 138
Query: 592 HRSAGGVIAFDSYVYALGGHDGLS----IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647
R + G++ + +Y GG G + + +S E YDP T+ WT + PM+ R G+
Sbjct: 139 QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF 198
Query: 648 LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDG 707
+ +KI+ GG +G L +VE YD +EWKM++ M V A ++ + G+ G
Sbjct: 199 VKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQG 258
Query: 708 VSNLPTVEVYDPSTDSWAFVAPMCAHEGG-VGVGVIPIC 745
V L + Y+ TD W + + A + V+ C
Sbjct: 259 VGRLGHILEYNTETDKWVANSKVRAFPVTSCLICVVDTC 297
Score = 290 bits (744), Expect = 1e-92
Identities = 71/250 (28%), Positives = 105/250 (42%), Gaps = 10/250 (4%)
Query: 498 LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDK 557
+ +R R+ FGG + + F+P W + KR ++
Sbjct: 2 MGTRPRRKKHDYRIALFGGS----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNV 57
Query: 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHD-GLSI 616
+Y+ GG + ++CY KD W R + A + +Y GG + G S
Sbjct: 58 VYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSA 116
Query: 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF----LQSVEMYDP 672
E YD +T+ W + MLT+RC G+ N IYVCGG G L S E+YDP
Sbjct: 117 LYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDP 176
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
T+ W + M R LV K++A+GG +G+ L VE YD + W V+PM
Sbjct: 177 ATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPW 236
Query: 733 HEGGVGVGVI 742
V +
Sbjct: 237 KGVTVKCAAV 246
Score = 198 bits (505), Expect = 6e-58
Identities = 50/204 (24%), Positives = 81/204 (39%), Gaps = 15/204 (7%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAE---EETLSNAVISTKSCL--------- 469
G I+ GG +L E +D W + S+ ++ +
Sbjct: 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN 161
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+G L++ EV+DP W M R G+ +K++++A GG NG L VE +
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221
Query: 530 DPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589
D W VSPM +K V AA+ +YV G+ GV L + Y + D+W +
Sbjct: 222 DIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANSKV 281
Query: 590 QKHRSAGGVIAFDSYVYALGGHDG 613
+ +I V G ++
Sbjct: 282 RAFPVTSCLIC---VVDTCGANEE 302
Score = 108 bits (273), Expect = 2e-26
Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 5/105 (4%)
Query: 638 TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697
+ R + +I + GG QS ++P W I R A V
Sbjct: 1 SMGTRPRRKKHDYRIALFGGSQ----PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDN 56
Query: 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
++ +GG + ++ Y+ DSW +
Sbjct: 57 VVYILGGSQL-FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA 100
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding,
invasion and metastasis, UBL conjugation pathway, UBL
protein folding; 2.00A {Rattus norvegicus}
Length = 318
Score = 345 bits (886), Expect = e-113
Identities = 80/346 (23%), Positives = 130/346 (37%), Gaps = 64/346 (18%)
Query: 412 TTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTK 471
PR +V I V + +DP+
Sbjct: 6 DIPRHGMFVKDLILLVND--------TAAVAYDPMENEC--------------------- 36
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSER------LST 525
+ A A + R+ + +N++Y GG E S
Sbjct: 37 -----------------YLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSY 79
Query: 526 VEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD--GVSSLNTVECYEPDKDQW 583
+ D V W + P+ R G ++DK+YV G D +SL++V CY+P +W
Sbjct: 80 FFQLDNVSSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKW 139
Query: 584 RIVKSMQKHRSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCR 642
VK++ VI+ + +Y LGG D + V Y+PK +W + PM T R
Sbjct: 140 SEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSM 199
Query: 643 LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAI 702
GVA KI + GG SVE +D T++W+++ RS ++LV+ G L+AI
Sbjct: 200 FGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAI 259
Query: 703 GGYDGV---------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
GG+ + + + + Y+ WA + + G
Sbjct: 260 GGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASC 305
Score = 194 bits (495), Expect = 2e-56
Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 27/230 (11%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGD-SLSTVEVFDPLVGRWQMA---EE 455
+P R L V I+ V G + SL +V +DP+ +W
Sbjct: 96 LPSARCLFG--------LGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI 147
Query: 456 ETLSNAVISTKSCL------TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN 509
+ + VIS + T + V +++P G W+ M RS GVA+ K
Sbjct: 148 KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKG 207
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSS 569
++ GG ++VE FD W ++ +RS++ +L LY GG+ +
Sbjct: 208 KIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQL 267
Query: 570 ---------LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG 610
+N + YE DK +W + ++ S +A ++ L
Sbjct: 268 ESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNLFKLSK 317
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding,
cytoskeleton; 1.78A {Homo sapiens}
Length = 315
Score = 332 bits (854), Expect = e-108
Identities = 65/285 (22%), Positives = 110/285 (38%), Gaps = 20/285 (7%)
Query: 475 SLSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVMKNRLYAFGGYNGSERL------STVE 527
S +DP A + ++ V + +N+++ GG +E +
Sbjct: 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFL 70
Query: 528 EFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY---DGVSSLNTVECYEPDKDQWR 584
+FD + W + P+ R G + +YV GG DG L++V CY+ +W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 585 IVKSMQKHRSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRL 643
+ V++ VY +GG + + YDPK EW + PM T R
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLF 190
Query: 644 GVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIG 703
G + +I V G S E+Y ++W + RS ++LV+ +G L+AIG
Sbjct: 191 GATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIG 250
Query: 704 GYDGV---------SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
G+ + + L + Y+ W V A+ G
Sbjct: 251 GFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGATF 295
Score = 303 bits (779), Expect = 1e-97
Identities = 59/321 (18%), Positives = 100/321 (31%), Gaps = 38/321 (11%)
Query: 419 YVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEE-----------TLSNAVI---- 463
++ IF + +DP A T N V
Sbjct: 2 FLQDLIFMISE--------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGG 53
Query: 464 STKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN---GS 520
+ K + FD L W + R G+ N +Y GG G
Sbjct: 54 LFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGE 113
Query: 521 ERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY-DGVSSLNTVECYEPD 579
L +V +D + W + P+ + + D +YV GG LN + Y+P
Sbjct: 114 RCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPK 173
Query: 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK 639
K +W+ + MQ RS G D + G + S E Y ++W + +
Sbjct: 174 KFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE 233
Query: 640 RCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIASMNVMRSRV 690
R L + +L +Y GG+ L + Y+ +W+ + +
Sbjct: 234 RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVLREIAYAAGA 293
Query: 691 ALVANMGKLWAIGGYDGVSNL 711
+ +L + NL
Sbjct: 294 TFLP--VRLNVLRLTKMAENL 312
Score = 260 bits (667), Expect = 4e-81
Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 18/247 (7%)
Query: 507 MKNRLYAFGGYNGSERLSTVEEFDPV-RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD 565
+++ ++ +DP + ++ V ++++V GG
Sbjct: 3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLF 55
Query: 566 GVSSL------NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH---DGLSI 616
++ +W + + R G+ + +Y +GG DG
Sbjct: 56 YNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERC 115
Query: 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGY-DGAIFLQSVEMYDPITD 675
DSV YD + +W P+ V + + +YV GG L + +YDP
Sbjct: 116 LDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKF 175
Query: 676 EWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEG 735
EWK +A M RS + G++ G + EVY + + WA
Sbjct: 176 EWKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235
Query: 736 GVGVGVI 742
+ + +
Sbjct: 236 SLSLVSL 242
Score = 199 bits (508), Expect = 3e-58
Identities = 46/279 (16%), Positives = 83/279 (29%), Gaps = 61/279 (21%)
Query: 400 MPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGD--SLSTVEVFDPLVGRWQMA---E 454
+P R L + I+ VGG L +V +D L +W +
Sbjct: 85 LPSPRCLFG--------LGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP 136
Query: 455 EETLSNAVISTKSCL------TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMK 508
+ V+S + L+ + V+DP W+ M RS G V
Sbjct: 137 YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHD 196
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568
R+ G + S+ E + W +RS++ +L LY GG+ +
Sbjct: 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLE 256
Query: 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628
+ + G + + + RY+ +
Sbjct: 257 TES--------------------------------------GELVPTELNDIWRYNEEEK 278
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQ 665
+W V + G L ++ V A ++ Q
Sbjct: 279 KWEGVLREI--AYAAGATFLPVRLNVLRLTKMAENLYFQ 315
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC,
structural genomics consortium, kelch repeat, secreted,
protein binding; 2.60A {Homo sapiens}
Length = 279
Score = 309 bits (794), Expect = e-100
Identities = 77/360 (21%), Positives = 129/360 (35%), Gaps = 94/360 (26%)
Query: 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTI---KVDDQSFTCHRIVLAATIPYFQAMF 104
E F+ S+ E RRQG CD+T+ + F HR VLAA YF +
Sbjct: 6 EAEDFECSSHCSELSWRQNEQRRQGLFCDITLCFGGAGGREFRAHRSVLAAATEYFTPLL 65
Query: 105 TSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALI 164
+ +ES+
Sbjct: 66 ----------------------------------SGQFSESRSGR--------------- 76
Query: 165 NFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224
V + +E
Sbjct: 77 -------VEMRK-----------------------------------WSSEPGPEPDTVE 94
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
A+I + Y+GR+ + + +V ++ +A + ++ + C +FLKK+ H +N + I A
Sbjct: 95 AVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLAHMY 154
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
QL+ A +++ FH+V +EF L + + D + E+ + SEE +FE V++WV+
Sbjct: 155 TLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLKWVQ 214
Query: 345 HNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERR 404
NA ER L +RL + P YL V E L+ ++ C LV +A + H +
Sbjct: 215 RNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHALRAEN 274
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation,
kelch repeat, neurodegeneration, phosphoprotein,
polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB:
3hve_B
Length = 256
Score = 275 bits (705), Expect = 2e-87
Identities = 54/355 (15%), Positives = 123/355 (34%), Gaps = 101/355 (28%)
Query: 45 TMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMF 104
+M E ++ + R + + CD + +D + + +LAA PY +
Sbjct: 2 SMAEGSAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPYIRTKL 61
Query: 105 TSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALI 164
+ + +I ++GI + M ++
Sbjct: 62 NYNPP--------------------------------KDDGSTYKIELEGISVMVMREIL 89
Query: 165 NFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224
++++SG++ ++ +Q ++ A L + + C +FL+ N +
Sbjct: 90 DYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDF------- 142
Query: 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL 284
A + V ++L+ F
Sbjct: 143 ------------------------ALHYCLHHVHYLATEYLETHF--------------- 163
Query: 285 NCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK 344
+VS ++EF+ L ++ +++ +L++ +E VFEAV+RW+
Sbjct: 164 -----------------RDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIA 206
Query: 345 HNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHL 399
H+ R + +++A+ + L YL +++ E L+ R++V E + L
Sbjct: 207 HDTEIRKVHMKDVMSALWVSGLDSSYLREQMLNEPLV------REIVKECSNIPL 255
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid
metabolism, kelch repeat, beta-propeller; HET: MSE;
1.50A {Escherichia coli}
Length = 357
Score = 197 bits (502), Expect = 6e-57
Identities = 41/290 (14%), Positives = 80/290 (27%), Gaps = 45/290 (15%)
Query: 473 GDSLSTVEVFD--PLVGRWQMAEAM-SMLRSRVGVAVMKNRLYAFGGYN-----GSERLS 524
G + + D +W A R + A + LY FGG ++ +
Sbjct: 27 GSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFN 86
Query: 525 TVEEFDPVRRVWNKV-SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW 583
V +++P W K+ S + N K YV GG + E
Sbjct: 87 DVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDS 146
Query: 584 RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-LTKRCR 642
+ + H Y + + +DP T +W+
Sbjct: 147 TAIDKINAH-------------YFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAG 193
Query: 643 LGVAALNNKIYVCGGYDG-AIFLQSVEMY--DPITDEWKMIASMNVMRSRVALVANM--G 697
V +K ++ G + +V +W +A ++ A +
Sbjct: 194 AAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND 253
Query: 698 KLWAIGG-----------------YDGVSNLPTVEVYDPSTDSWAFVAPM 730
L GG ++G+ + +++ W +
Sbjct: 254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303
Score = 186 bits (474), Expect = 4e-53
Identities = 38/341 (11%), Positives = 86/341 (25%), Gaps = 55/341 (16%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQ----MAEEETLSNAVISTKSCL-------- 469
++ G AG + ++ +W L
Sbjct: 20 DTVYIGLG--SAGTAWYKLD-TQAKDKKWTALAAFPGGPRDQATSAFIDGNLYVFGGIGK 76
Query: 470 --TKAGDSLSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTV 526
+ V ++P W ++ M + V + Y GG N +
Sbjct: 77 NSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYF 136
Query: 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586
E+ + + + + + Y + + ++P QW
Sbjct: 137 EDLNEAGKDSTAIDKI-------------NAHYFDKKAEDYFFNKFLLSFDPSTQQWSYA 183
Query: 587 KSM-QKHRSAGGVIAFDSYVYALGGHDGLSIF-DSVERY--DPKTDEWTSVKPMLTKRCR 642
+ V+ + + G + D+V +W + P+ +
Sbjct: 184 GESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGV 243
Query: 643 LGVAA--LNNKIYVCGG-----------------YDGAIFLQSVEMYDPITDEWKMIASM 683
G A N+ + GG ++G S +++ +W +
Sbjct: 244 AGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGEL 303
Query: 684 NVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724
+ R+ + L IGG + +
Sbjct: 304 SQGRAYGVSLPWNNSLLIIGGETA-GGKAVTDSVLITVKDN 343
Score = 182 bits (464), Expect = 1e-51
Identities = 42/254 (16%), Positives = 75/254 (29%), Gaps = 26/254 (10%)
Query: 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAALNDK 557
A+ + +Y G G+ + + W ++ R +A ++
Sbjct: 10 FKSGTGAIDNDTVYIGLGSAGTAWYKL--DTQAKDKKWTALAAFPGGPRDQATSAFIDGN 67
Query: 558 LYVCGGYD-----GVSSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIAFDSYVYALGGH 611
LYV GG N V Y P + W + S + + Y GG
Sbjct: 68 LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGV 127
Query: 612 DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD 671
+ E + + T++ + N Y + F + + +D
Sbjct: 128 NQNIFNGYFEDLNEAGKDSTAIDKI-------------NAHYFDKKAEDYFFNKFLLSFD 174
Query: 672 PITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDG-VSNLPTVEVY--DPSTDSWAFV 727
P T +W + A+V K W I G V + W +
Sbjct: 175 PSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKL 234
Query: 728 APMCAHEGGVGVGV 741
AP+ + +G G
Sbjct: 235 APVSSPDGVAGGFA 248
Score = 136 bits (345), Expect = 2e-35
Identities = 36/313 (11%), Positives = 77/313 (24%), Gaps = 55/313 (17%)
Query: 413 TPRRCNYVM----GHIFAVGGLTKAGDS----LSTVEVFDPLVGRWQ----MAEEETLSN 460
R G+++ GG+ K + + V ++P W A +
Sbjct: 53 GGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGH 112
Query: 461 AVISTKSCL-----TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFG 515
E + + ++
Sbjct: 113 VTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED--------Y 164
Query: 516 GYNGSERLSTVEEFDPVRRVWNKVSPMCFK-RSAVGAAALNDKLYVCGGYDG-VSSLNTV 573
+N + FDP + W+ + + DK ++ G + V
Sbjct: 165 FFN-----KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAV 219
Query: 574 ECYEPDK--DQWRIVKSMQKHRSAGGVIAF--DSYVYALGG-----------------HD 612
+ +W + + G A + + GG H+
Sbjct: 220 FELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279
Query: 613 GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYD 671
GL S + + +W + R NN + + GG G + +
Sbjct: 280 GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVLIT 339
Query: 672 PITDEWKMIASMN 684
+ D + ++
Sbjct: 340 -VKDNKVTVQNLE 351
Score = 130 bits (328), Expect = 4e-33
Identities = 27/161 (16%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 588 SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-LTKRCRLGVA 646
+G + VY G G + + K +WT++ R + A
Sbjct: 5 ETPVPFKSGTGAIDNDTVYIGLGSAGTAWY--KLDTQAKDKKWTALAAFPGGPRDQATSA 62
Query: 647 ALNNKIYVCGGYD-----GAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKLW 700
++ +YV GG V Y+P T+ W + S + + + GK +
Sbjct: 63 FIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAY 122
Query: 701 AIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
GG + E + + + + AH
Sbjct: 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED 163
Score = 89.2 bits (221), Expect = 3e-19
Identities = 20/108 (18%), Positives = 34/108 (31%), Gaps = 12/108 (11%)
Query: 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD--PITDEWKMIASM-NVMR 687
+ + A N+ +Y+ G G + D +W +A+ R
Sbjct: 1 SVLPETPVPFKSGTGAIDNDTVYIGLGSAG----TAWYKLDTQAKDKKWTALAAFPGGPR 56
Query: 688 SRVALVANMGKLWAIGGYDGVSN-----LPTVEVYDPSTDSWAFVAPM 730
+ G L+ GG S V Y+P T+SW +
Sbjct: 57 DQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSH 104
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics,
struct genomics consortium, SGC, structural protein;
2.40A {Homo sapiens}
Length = 144
Score = 162 bits (412), Expect = 5e-47
Identities = 22/164 (13%), Positives = 60/164 (36%), Gaps = 32/164 (19%)
Query: 40 TSTTSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPY 99
T + + + ++ + R + + CD + +D + + +LAA PY
Sbjct: 13 LGTENLYFQSMAVSDPQHAARLLRALSSFREESRFCDAHLVLDGEEIPVQKNILAAASPY 72
Query: 100 FQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVA 159
+ + + + +I ++GI +
Sbjct: 73 IRTKLNYNPPKD--------------------------------DGSTYKIELEGISVMV 100
Query: 160 MEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
M ++++++SG++ ++ +Q ++ A L + + C +FL+
Sbjct: 101 MREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
Score = 74.7 bits (184), Expect = 5e-16
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
M ++++ +SG++ ++ +Q ++ A L + + C +FL+
Sbjct: 100 VMREILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLE 144
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond,
activator, DNA-binding, nucleus, phosphorylation,
repressor; 2.50A {Mus musculus}
Length = 138
Score = 158 bits (401), Expect = 2e-45
Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 35/167 (20%)
Query: 43 TSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQA 102
+ + ++ + + + R++ LCDVT+ V+ Q F HR VLAA YF +
Sbjct: 5 SVSESAVFAYESSVHSTNVLLSLNDQRKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFHS 64
Query: 103 MFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162
+++ + + E
Sbjct: 65 RIVG-----------------------------------QTDAELTVTLPEEVTVKGFEP 89
Query: 163 LINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 209
LI F Y+ ++ + NV + FL + + ++C FLK +F +
Sbjct: 90 LIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDS 136
Score = 79.6 bits (197), Expect = 8e-18
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 272
+ E LI FAY+ ++ + NV + FL + + ++C FLK +F +
Sbjct: 85 KGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLDS 136
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC
domain,transcription factor, protein-PROT interaction;
2.44A {Homo sapiens}
Length = 124
Score = 153 bits (390), Expect = 3e-44
Identities = 32/154 (20%), Positives = 55/154 (35%), Gaps = 35/154 (22%)
Query: 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMA 109
++ + + + R++ LCDVTI V+ Q F HR VLAA YF +
Sbjct: 5 FAYESSVHSTNVLLSLNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVG--- 61
Query: 110 ESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYS 169
A+ + + + E LI F Y+
Sbjct: 62 --------------------------------QADGELNITLPEEVTVKGFEPLIQFAYT 89
Query: 170 GRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
++ + +NV + FL + + ++C FLK
Sbjct: 90 AKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
Score = 75.7 bits (187), Expect = 1e-16
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ E LI FAY+ ++ + +NV + FL + + ++C FLK
Sbjct: 78 KGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression,
transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB:
1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Length = 127
Score = 153 bits (389), Expect = 5e-44
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++
Sbjct: 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSI--------------------- 58
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
FT + + I+ L++F+Y+ R+ + N+ ++M
Sbjct: 59 -------------FTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREGNIMAVMA 105
Query: 185 VASFLQMQKVADACADFLKK 204
A +LQM+ V D C F+K
Sbjct: 106 TAMYLQMEHVVDTCRKFIKA 125
Score = 75.7 bits (187), Expect = 1e-16
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267
L++F Y+ R+ + N+ ++M A +LQM+ V D C F+K
Sbjct: 79 EGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIKA 125
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK,
proto oncogene, transcription F transcription; 2.00A
{Homo sapiens} PDB: 2nn2_A
Length = 120
Score = 153 bits (388), Expect = 6e-44
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 34/141 (24%)
Query: 62 FPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGI 121
+ E R QG LCDV I V+ + F HR VLAA YF+ +
Sbjct: 13 LSGLNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQYFKKL------------------ 54
Query: 122 DAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQS 181
FTS +Q + + A A+ AL++F Y+ +T+ + NV
Sbjct: 55 ----------------FTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGD 98
Query: 182 LMVVASFLQMQKVADACADFL 202
++ A L++ V+ CAD L
Sbjct: 99 ILSAARLLEIPAVSHVCADLL 119
Score = 72.2 bits (178), Expect = 2e-15
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265
A+ AL++FAY+ +T+ + NV ++ A L++ V+ CAD L
Sbjct: 75 EALTALMDFAYTATLTVSTANVGDILSAARLLEIPAVSHVCADLL 119
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo
sapiens} PDB: 3ohv_A
Length = 125
Score = 150 bits (382), Expect = 4e-43
Identities = 30/153 (19%), Positives = 55/153 (35%), Gaps = 35/153 (22%)
Query: 50 LVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMA 109
V++ + + + R++ LCDVT+ V+ + F HR VLAA YF
Sbjct: 8 YVYESTVHCTNILLGLNDQRKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQALVGQTK 67
Query: 110 ESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYS 169
+ + A L+ F Y+
Sbjct: 68 NDLV-----------------------------------VSLPEEVTARGFGPLLQFAYT 92
Query: 170 GRVTIHSQNVQSLMVVASFLQMQKVADACADFL 202
++ + +N++ ++ A FL+M + D+C FL
Sbjct: 93 AKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
Score = 73.8 bits (182), Expect = 6e-16
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265
R L+ FAY+ ++ + +N++ ++ A FL+M + D+C FL
Sbjct: 81 RGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3,
structural genomics, NPPSFA; 2.60A {Mus musculus}
Length = 135
Score = 150 bits (380), Expect = 1e-42
Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 38/148 (25%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R +G+ CD T+ V F H VLA +FQ ++ S
Sbjct: 16 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGDGTGGS------------- 62
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A L++F Y+G + + S N +++
Sbjct: 63 -------------------------VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLL 97
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVL 212
A L++ + + C F +
Sbjct: 98 AAKELRVPEAVELCQSFQPQTSVGQAQS 125
Score = 92.7 bits (231), Expect = 2e-22
Identities = 12/63 (19%), Positives = 27/63 (42%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
L++F Y+G + + S N +++ A L++ + + C F + G+ Q
Sbjct: 71 EIFGLLLDFFYTGHLALTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQSGLGQS 130
Query: 281 ADT 283
+
Sbjct: 131 GPS 133
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote;
protein-protein interaction domain, transcriptional
represso finger protein; 1.90A {Homo sapiens} SCOP:
d.42.1.1 PDB: 1cs3_A
Length = 121
Score = 146 bits (370), Expect = 2e-41
Identities = 27/155 (17%), Positives = 54/155 (34%), Gaps = 39/155 (25%)
Query: 49 CLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDM 108
+ Q + ++R G LCDV I VD Q F HR VLA T F+ +F +
Sbjct: 3 MIQLQNPSHPTGLLCKANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS 62
Query: 109 AESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVY 168
+ T+ + + ++ + Y
Sbjct: 63 ---------------------------------------QHYTLDFLSPKTFQQILEYAY 83
Query: 169 SGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 203
+ + ++++ L+ A L+++ + + C L+
Sbjct: 84 TATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
Score = 72.6 bits (179), Expect = 2e-15
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ + ++ +AY+ + ++++ L+ A L+++ + + C L+
Sbjct: 73 KTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEYLEEQCLKMLE 118
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain,
phosphoprotein, repressor, transcri transcription
regulation; 2.10A {Homo sapiens}
Length = 129
Score = 143 bits (363), Expect = 2e-40
Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 37/157 (23%)
Query: 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSD 107
+ L + + + + E R QG CDV++ V +F HR VLAA+ YF+ +F +
Sbjct: 7 QTLQMEIPNFGNSILECLNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNS 66
Query: 108 MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFV 167
+ + + + + +++F
Sbjct: 67 RSAVVE-------------------------------------LPAAVQPQSFQQILSFC 89
Query: 168 YSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 204
Y+GR++++ + LM A FLQ+Q++ + +F K
Sbjct: 90 YTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126
Score = 76.2 bits (188), Expect = 9e-17
Identities = 16/73 (21%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 197 ACADFLKKRFH--PNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQM 254
A + + + F+ + V++ ++ + +++F Y+GR++++ + LM A FLQ+
Sbjct: 54 ASSSYFRDLFNNSRSAVVELPAAVQPQSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQI 113
Query: 255 QKVADACADFLKK 267
Q++ + +F K
Sbjct: 114 QEIMEKGTEFFLK 126
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding,
alternative splicing, zinc, nucleus, BTB domain,
zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Length = 116
Score = 142 bits (360), Expect = 3e-40
Identities = 29/139 (20%), Positives = 53/139 (38%), Gaps = 36/139 (25%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R G LCD TI + + F HR VLA+ YF A++ S
Sbjct: 13 LNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTS---------------- 56
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A + L+ F+Y+G + + S NV+ +
Sbjct: 57 --------------------ENNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQ 96
Query: 185 VASFLQMQKVADACADFLK 203
A +L++++V C ++
Sbjct: 97 AADYLKVEEVVTKCKIKME 115
Score = 72.2 bits (178), Expect = 2e-15
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ L+ F Y+G + + S NV+ + A +L++++V C ++
Sbjct: 70 DGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKME 115
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related
zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene;
1.74A {Homo sapiens}
Length = 119
Score = 141 bits (359), Expect = 6e-40
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 38/140 (27%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R +G+ CD T+ V F H VLA +FQ+++ S
Sbjct: 15 LNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGGS------------- 61
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + A L++F Y+G + + S N +++
Sbjct: 62 -------------------------VVLPAGFAEIFGLLLDFFYTGHLALTSGNRDQVLL 96
Query: 185 VASFLQMQKVADACADFLKK 204
A L++ + + C F K
Sbjct: 97 AARELRVPEAVELCQSFKPK 116
Score = 74.6 bits (184), Expect = 3e-16
Identities = 11/47 (23%), Positives = 23/47 (48%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267
L++F Y+G + + S N +++ A L++ + + C F K
Sbjct: 70 EIFGLLLDFFYTGHLALTSGNRDQVLLAARELRVPEAVELCQSFKPK 116
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain,
BTB/POZ domain, ZBTB32, zinc finger domain-containing
protein 32; 2.00A {Homo sapiens}
Length = 119
Score = 138 bits (351), Expect = 6e-39
Identities = 28/142 (19%), Positives = 38/142 (26%), Gaps = 43/142 (30%)
Query: 64 VMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDA 123
V R + LCD I V Q F H +VLA
Sbjct: 20 VQLAARLRPALCDTLITVGSQEFPAHSLVLAGVSQQLGRRGQ------------------ 61
Query: 124 VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+GI L+NFVY V + ++ L
Sbjct: 62 -------------------------WALGEGISPSTFAQLLNFVYGESVELQPGELRPLQ 96
Query: 184 VVASFLQMQKVADACADFLKKR 205
A L +Q + +AC R
Sbjct: 97 EAARALGVQSLEEACWRARGDR 118
Score = 77.3 bits (191), Expect = 3e-17
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 4/72 (5%)
Query: 197 ACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256
+ L +R S L+NF Y V + ++ L A L +Q
Sbjct: 51 GVSQQLGRRGQWALGEG----ISPSTFAQLLNFVYGESVELQPGELRPLQEAARALGVQS 106
Query: 257 VADACADFLKKR 268
+ +AC R
Sbjct: 107 LEEACWRARGDR 118
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo
sapiens} PDB: 3m52_A
Length = 119
Score = 136 bits (345), Expect = 5e-38
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 39/139 (28%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R+ G LCD T VD F H+ VLAA YF+ +F
Sbjct: 18 LNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEYFKMLFVD------------------ 59
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
++ + + +A + ++ F+Y+ ++++ +NV ++
Sbjct: 60 ---------------------QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLA 98
Query: 185 VASFLQMQKVADACADFLK 203
VA+FLQMQ + AC
Sbjct: 99 VATFLQMQDIITACHALKS 117
Score = 71.1 bits (175), Expect = 4e-15
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ ++ F Y+ ++++ +NV ++ VA+FLQMQ + AC
Sbjct: 72 AGLGQVLEFMYTAKLSLSPENVDDVLAVATFLQMQDIITACHALKS 117
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein
binding; 2.40A {Homo sapiens}
Length = 145
Score = 137 bits (347), Expect = 6e-38
Identities = 28/160 (17%), Positives = 55/160 (34%), Gaps = 37/160 (23%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + + D + V Q F H+ +LAA P F AMF +M ESK+ + + ++
Sbjct: 16 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPE 75
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ + ++ F+Y+G+ + L+
Sbjct: 76 V----------------------------------FKEMMCFIYTGKAPNLDKMADDLLA 101
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDYYVL---FSCR 221
A ++++ C D L N + +L S
Sbjct: 102 AADKYALERLKVMCEDALCSNLSVENAAEILILADLHSAD 141
Score = 83.7 bits (208), Expect = 4e-19
Identities = 14/69 (20%), Positives = 26/69 (37%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
+ ++ F Y+G+ + L+ A ++++ C D L N I
Sbjct: 75 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 134
Query: 281 ADTLNCLQL 289
AD + QL
Sbjct: 135 ADLHSADQL 143
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus,
UBL conjugation pathway, protein binding; 2.50A {Homo
sapiens}
Length = 172
Score = 136 bits (345), Expect = 2e-37
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 42/188 (22%)
Query: 37 SFVTSTTSTMDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAAT 96
S + +TM+ V + L + + + + D + V Q F H+ +LAA
Sbjct: 2 SGGSGGQNTMNMVKVPEC-RLADE----LGGLWENSRFTDCCLCVAGQEFQAHKAILAAR 56
Query: 97 IPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGID 156
P F AM F +M ESK+ + + ++
Sbjct: 57 SPVFSAM----------------------------------FEHEMEESKKNRVEINDVE 82
Query: 157 AVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYV 216
+ ++ F+Y+G+ + L+ A ++++ C D L N + +
Sbjct: 83 PEVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILI 142
Query: 217 L---FSCR 221
L S
Sbjct: 143 LADLHSAD 150
Score = 99.6 bits (249), Expect = 2e-24
Identities = 16/88 (18%), Positives = 33/88 (37%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQF 280
+ ++ F Y+G+ + L+ A ++++ C D L N I
Sbjct: 84 EVFKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILIL 143
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSD 308
AD + QL A ++ + +V +
Sbjct: 144 ADLHSADQLKTQAVDFINYHATDVLETS 171
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo
sapiens}
Length = 109
Score = 133 bits (336), Expect = 5e-37
Identities = 28/141 (19%), Positives = 48/141 (34%), Gaps = 39/141 (27%)
Query: 69 RRQGKLCDVTIKV----DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ DV V ++ H+ VLA F AMF D+AE K
Sbjct: 3 FNNELMADVHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVKS----------- 51
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
EI + ++ A L+ ++YS + + + V + +
Sbjct: 52 ------------------------EIHIPDVEPAAFLILLKYMYSDEIDLEADTVLATLY 87
Query: 185 VASFLQMQKVADACADFLKKR 205
A + +A AC +FL+
Sbjct: 88 AAKKYIVPALAKACVNFLETS 108
Score = 66.8 bits (164), Expect = 1e-13
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 268
A L+ + YS + + + V + + A + +A AC +FL+
Sbjct: 62 AFLILLKYMYSDEIDLEADTVLATLYAAKKYIVPALAKACVNFLETS 108
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 122 bits (309), Expect = 3e-33
Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 3/106 (2%)
Query: 264 FLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVK 323
N L + AD + +L AA + + ++ ++EF+ L + DI+
Sbjct: 3 SGSSGVQVGNCLQVMWLADRHSDPELYTAAKHCAKTHLAQLQNTEEFLHLPHRLLTDIIS 62
Query: 324 RSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPH 369
+ EA+ W+ N ER L +++ + H
Sbjct: 63 DGVP---CSQNPTEAIEAWINFNKEEREAFAESLRTSLKEIGENVH 105
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain
containing 33, kaiso transcriptio ZNF-kaiso,
ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB:
3m4t_A 3m8v_A
Length = 116
Score = 114 bits (288), Expect = 2e-30
Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 40/152 (26%)
Query: 46 MDECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFT 105
+ + + + E R G CDVT+ V+D+ F H+ +L+A+ YF +F+
Sbjct: 3 SRKLISATDIQYSGSLLNSLNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS 62
Query: 106 SDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALIN 165
+ + + I A ++N
Sbjct: 63 V---------------------------------------AGQVVELSFIRAEIFAEILN 83
Query: 166 FVYSGRVTIHSQ-NVQSLMVVASFLQMQKVAD 196
++YS ++ + L+ L ++ +A
Sbjct: 84 YIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
Score = 50.0 bits (120), Expect = 1e-07
Identities = 6/39 (15%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 222 AMEALINFAYSGRVTIHSQ-NVQSLMVVASFLQMQKVAD 259
++N+ YS ++ + L+ L ++ +A
Sbjct: 77 IFAEILNYIYSSKIVRVRSDLLDELIKSGQLLGVKFIAA 115
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL
conjugation pathway, protein binding, ligase; 2.62A
{Homo sapiens} PDB: 3hu6_A
Length = 312
Score = 120 bits (303), Expect = 3e-30
Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 38/172 (22%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + + D + V Q F H+ +LAA P F AM
Sbjct: 165 LGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAM--------------------- 203
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
F +M ESK+ + + ++ + ++ F+Y+G+ + L+
Sbjct: 204 -------------FEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLA 250
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDYYVL---FSCRAM-EALINFAYS 232
A ++++ C D L N + +L S + ++F
Sbjct: 251 AADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 125 bits (313), Expect = 6e-30
Identities = 45/316 (14%), Positives = 101/316 (31%), Gaps = 40/316 (12%)
Query: 459 SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN-RLYAFGG- 516
++ + G+ ++D W M + R A M + R++ GG
Sbjct: 247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGS 306
Query: 517 YNGSERLSTVEEFDPVRRVWNKVSPMCFKR----SAVGAAALNDKLYVCGGYDGV----- 567
++G E + P + W + G ++ ++ G G
Sbjct: 307 WSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAG 366
Query: 568 SSLNTVECYEPDKDQWRIVKSMQKHRS------AGGVIAFDSY---VYALGG------HD 612
S Y + Q +R G + +D+ + GG D
Sbjct: 367 PSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD 426
Query: 613 GLSIFDSVERYDPKTDEWT--SVKPMLTKRCRLGVAALNN-KIYVCGG------YDGAIF 663
+ + +P T T + + R L + ++ GG ++ +
Sbjct: 427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTP 486
Query: 664 LQSVEMYDPITDEWKMIASMNVMRSR--VALVANMGKLWAIGG---YDGVSNLPTVEVYD 718
+ + E+Y P D + +++R ++L+ G+++ GG D +N +++
Sbjct: 487 VFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFT 546
Query: 719 PSTDSWAFVAPMCAHE 734
P+ + +
Sbjct: 547 PNYLYNSNGNLATRPK 562
Score = 117 bits (294), Expect = 2e-27
Identities = 52/368 (14%), Positives = 103/368 (27%), Gaps = 57/368 (15%)
Query: 412 TTPRRCNYVMGHIFAVGG--LTKAGDSLSTVEVFDPLVGRW----QMAEE------ETLS 459
T + + G G + G+ ++D W M T+S
Sbjct: 237 TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 296
Query: 460 NAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRV----GVAVMKNRLYAFG 515
+ + T G EV+ P W + G+ N + FG
Sbjct: 297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356
Query: 516 GYNGSE-----RLSTVEEFDPVRRVWNK---------VSPMCFKRSAVGAAALNDKLYVC 561
GS + + V+P +AV A+ K+
Sbjct: 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416
Query: 562 GG------YDGVSSLNTVECYEP--DKDQWRIVKSMQKHRSAG-GVIAFDSYVYALGGH- 611
GG D ++ + + EP + + R+ V+ D + GG
Sbjct: 417 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476
Query: 612 -----DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGG---YDGA 661
+ + + E Y P+ D + P R ++ L + +++ GG D
Sbjct: 477 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 536
Query: 662 IFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV---SNLPTVEVYD 718
+++ P + + + +GG + S++ +
Sbjct: 537 TNHFDAQIFTPNYLYNSNGNLATRPK----ITRTSTQSVKVGGRITISTDSSISKASLIR 592
Query: 719 PSTDSWAF 726
T +
Sbjct: 593 YGTATHTV 600
Score = 86.6 bits (213), Expect = 1e-17
Identities = 35/272 (12%), Positives = 80/272 (29%), Gaps = 15/272 (5%)
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+ DS + F+ R+ A++ + ++ + ++ Y +
Sbjct: 121 SWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLGRWGP 180
Query: 530 DPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589
+ + + V + G G++ ++ + + +
Sbjct: 181 TIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 240
Query: 590 QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL- 648
G + + + GG+D YD +D W M R A +
Sbjct: 241 HDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 296
Query: 649 NNKIYVCGG-YDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA----LVANMGKLWAIG 703
+ +++ GG + G +F ++ E+Y P + W + + V A L + W G
Sbjct: 297 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 356
Query: 704 GYDGV-----SNLPTVEVYDPSTDSWAFVAPM 730
G + Y +
Sbjct: 357 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKR 388
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A
{Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Length = 695
Score = 100 bits (250), Expect = 5e-22
Identities = 48/356 (13%), Positives = 108/356 (30%), Gaps = 36/356 (10%)
Query: 382 RSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVE 441
+ + DE +FHL L ++ + D +
Sbjct: 321 KKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQLL 380
Query: 442 VFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSR 501
+ + R + ++ S + + L +D + + + + +R
Sbjct: 381 ECECPINRKFGDVDVAGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR 440
Query: 502 VG---VAVMKN-RLYAFGGYNGSER-LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556
+ + +N +L GG + LS FD R W+ + + R A +L D
Sbjct: 441 MCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD 500
Query: 557 -KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG--------GVIAFDSYVYA 607
+ + GG + Y ++ ++ V + ++ +
Sbjct: 501 GNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557
Query: 608 LGGHDGLSIFDSVERYDPKTDEWT-------SVKPMLTKRCRLGVAAL-NNKIYVCGGYD 659
G D ++ D + + T ++ L +R + + K+ + GG
Sbjct: 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTS 617
Query: 660 GAIFL---QSVEMYDPITDEWKMIASMNVMRSRV--------ALVANMGKLWAIGG 704
+ S+ DP+++ I + + +MG + IGG
Sbjct: 618 PSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673
Score = 100 bits (249), Expect = 6e-22
Identities = 49/367 (13%), Positives = 105/367 (28%), Gaps = 53/367 (14%)
Query: 339 VMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFH 398
+ + + L HY+ + +
Sbjct: 312 LWESADEATKKELLKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINL 371
Query: 399 LMPERRFLLAGEKTTPRRCNYVM---GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE 455
+ E LL E R+ V +F +GG ++ + + M
Sbjct: 372 TVDEDYQLLECECPINRKFGDVDVAGNDVFYMGGSN--PYRVNEILQLSIHYDKIDMKNI 429
Query: 456 ETLSNAVISTKSC-----------------LTKAGDSLSTVEVFDPLVGRWQMAEAMSML 498
E S+ V + C LS +FD W M +++S
Sbjct: 430 EVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHT 489
Query: 499 RSR-VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA---- 553
R R ++ + GG + ++ ++ V+P +A
Sbjct: 490 RFRHSACSLPDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEF 546
Query: 554 ---LNDKLYVCGGYDGVSSLN-TVECYEPDKD----QWRIVKSMQ----KHRSAGGVIAF 601
+ + GG+ ++++ ++ D + ++K +Q + +
Sbjct: 547 DPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYIT 606
Query: 602 DSYVYALGGHDGLSIF---DSVERYDPKTDEWTSVKPMLTKR-----CRLG---VAALNN 650
+ +GG +F +S+ DP ++ TS+ G V+
Sbjct: 607 PRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLMLAGFSLVSTSMG 666
Query: 651 KIYVCGG 657
I++ GG
Sbjct: 667 TIHIIGG 673
Score = 97.1 bits (241), Expect = 5e-21
Identities = 43/265 (16%), Positives = 87/265 (32%), Gaps = 39/265 (14%)
Query: 499 RSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV------RRVWNKVSPMCFKRSAVGAA 552
R V V N ++ GG N R++ + + + + S + R
Sbjct: 388 RKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFT 446
Query: 553 AL--NDKLYVCGGYDGVSS-LNTVECYEPDKDQWRIVKSMQKHR---SAGGVIAFDSYVY 606
+ N++L + GG L+ ++ +W ++KS+ R SA D V
Sbjct: 447 TISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSA--CSLPDGNVL 504
Query: 607 ALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA-------LNNKIYVCGGY- 658
LGG ++ Y+ + + V P V+A I + GG+
Sbjct: 505 ILGGVTE---GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFM 561
Query: 659 DGAIFLQSVEMY----DPITDEWKMIASMNVMRSR-----VALVANMGKLWAIGGYDGVS 709
D ++ + T+ +I + + + + KL +GG
Sbjct: 562 DQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITP-RKLLIVGGTSPSG 620
Query: 710 NLP---TVEVYDPSTDSWAFVAPMC 731
++ DP +++ +
Sbjct: 621 LFDRTNSIISLDPLSETLTSIPISR 645
Score = 83.3 bits (205), Expect = 1e-16
Identities = 40/327 (12%), Positives = 98/327 (29%), Gaps = 28/327 (8%)
Query: 421 MGHIFA---VGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLS 477
F+ + + L +V ++ + + Q + + + L ++ D +
Sbjct: 261 PFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMFQLWESADEAT 320
Query: 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN 537
E+ + ++ E V + +AF +R +
Sbjct: 321 KKEL-LKVEPFDELEEFHLFCHHYVLCHATNYKEFAFTQGFLFDRSISEINLTVDEDYQL 379
Query: 538 KVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK------SMQK 591
R + ++ GG + +N + D+ + +
Sbjct: 380 LECECPINRKFGDVDVAGNDVFYMGGSNP-YRVNEILQLSIHYDKIDMKNIEVSSSEVPV 438
Query: 592 HRS--AGGVIAFDSYVYALGGHDG-LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
R I+ ++ + +GG +D KT EW+ +K + R R +L
Sbjct: 439 ARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSL 498
Query: 649 -NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR-------VALVANMGKLW 700
+ + + GG ++ +Y+ + +K + + + +
Sbjct: 499 PDGNVLILGGVTEG---PAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII 555
Query: 701 AIGGYDG---VSNLPTVEVYDPSTDSW 724
GG+ VS+ + YD +
Sbjct: 556 LGGGFMDQTTVSDKAIIFKYDAENATE 582
Score = 72.9 bits (178), Expect = 2e-13
Identities = 28/154 (18%), Positives = 57/154 (37%), Gaps = 16/154 (10%)
Query: 588 SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRC----RL 643
+R G V + V+ +GG + + + + D+ ++ R+
Sbjct: 383 ECPINRKFGDVDVAGNDVFYMGGSNPYR-VNEILQLSIHYDKIDMKNIEVSSSEVPVARM 441
Query: 644 GVAA----LNNKIYVCGGYDG-AIFLQSVEMYDPITDEWKMIASMNVMRSR--VALVANM 696
NN++ + GG L ++D T EW MI S++ R R + +
Sbjct: 442 CHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPD- 500
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
G + +GG + +Y+ + + + V P
Sbjct: 501 GNVLILGGVTEGPAM---LLYNVTEEIFKDVTPK 531
Score = 49.7 bits (118), Expect = 3e-06
Identities = 23/161 (14%), Positives = 46/161 (28%), Gaps = 16/161 (9%)
Query: 581 DQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640
D+ H + + + G S+ + DE +
Sbjct: 331 DELEEFHLFCHHYVLCHATNYKEFAF----TQGFLFDRSISEINLTVDEDYQLLECECPI 386
Query: 641 CRLG--VAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI------ASMNVMRSR--V 690
R V N ++ GG + + + D+ M + + V R
Sbjct: 387 NRKFGDVDVAGNDVFYMGGSNPY-RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTF 445
Query: 691 ALVANMGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVAPM 730
++ +L IGG L ++D T W+ + +
Sbjct: 446 TTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL 486
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 74.3 bits (182), Expect = 1e-13
Identities = 78/528 (14%), Positives = 141/528 (26%), Gaps = 220/528 (41%)
Query: 4 LKHPSLEPNPDTSTVDYIR--NLKMSKLIKRSVSPSFVTSTTSTMDECLVFQQLDLFSQ- 60
L H SLE T + L+ + K P T + DE +L +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQ-EQFNKILPEP---TEGFAADDEPT--TPAELVGKF 64
Query: 61 -GFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQ 119
G+ V+ V+ VL + F+ + ++
Sbjct: 65 LGY--------------VSSLVEPSKVGQFDQVLNLCLTEFENCY-------------LE 97
Query: 120 GIDAVI-VLAATIP----------------YFQAMFTSDMAESKQREITMQGIDAVAMEA 162
G D I LAA + Y A + K+ A
Sbjct: 98 GND--IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN-----------SA 144
Query: 163 LINFVYSGRVTIHSQ-----------------------NVQSLMVVAS--FLQMQKVADA 197
L V G + + V L+ ++ ++ +
Sbjct: 145 LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLD 204
Query: 198 CADFLKKRF-------HPNNV--LDY--YVLFSCR--AMEALINFAYSGRV--------- 235
+ +P+N DY + SC + L ++ + ++
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELR 264
Query: 236 ------TIHSQNVQSLMVVA------SFLQMQKVADACADFLKKRFHPNNVLGIRQFADT 283
T HSQ + + + +A SF + + F +G+R
Sbjct: 265 SYLKGATGHSQGLVTAVAIAETDSWESFF------VSVRKAITVLFF----IGVR----- 309
Query: 284 LNCLQLSEAADKYVQQYFHEVSMSDEFI------------------GLGVNEVNDIVKRS 325
C + + S+ + L +V D V ++
Sbjct: 310 --C-----------YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKT 356
Query: 326 ELHLMSEEQVFEAVMRWVKHNASERA-----P-SLPRLLAAVR----------------- 362
HL + +QV ++ N ++ P SL L +R
Sbjct: 357 NSHLPAGKQVEISL-----VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 363 ---------LPLLSP---HYLADRVATEALIRSSHECRDLVDEARDFH 398
LP+ SP H L A++ + +DLV F+
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVP--ASDLIN------KDLVKNNVSFN 451
Score = 68.5 bits (167), Expect = 7e-12
Identities = 109/629 (17%), Positives = 171/629 (27%), Gaps = 216/629 (34%)
Query: 185 VASFLQMQKVADACADFLKKRFHPNNVLDY-YVLFSCRAMEALINF--AYSGRVTIHSQN 241
V FL ++ P+ V + VL L F Y IH+
Sbjct: 61 VGKFLG----------YVSSLVEPSKVGQFDQVLNL-----CLTEFENCYLEGNDIHA-- 103
Query: 242 VQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADK-----Y 296
+ A LQ L K + ++ R F N L A +
Sbjct: 104 -----LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNAQLV 157
Query: 297 VQ---Q-----YFHE-VSMSDEFIGLGVNEVNDIVKRSELHL-------MSEEQVFEA-- 338
Q YF E + + L V D++K S L + E+VF
Sbjct: 158 AIFGGQGNTDDYFEELRDLYQTYHVL----VGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 339 -VMRWVKHNASERAPSLPRLL-AAVRLPLLS----PHYLADRVATEALIRSSHECRDLVD 392
++ W+++ P LL + PL+ HY+ + L
Sbjct: 214 NILEWLEN--PSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-------------AKLL-- 256
Query: 393 EARDFHLMP-ERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSL-----STVEV-FDP 445
P E R L G T V A + +S + V F
Sbjct: 257 -----GFTPGELRSYLKG--ATGHSQGLVTAVAIAET---DSWESFFVSVRKAITVLF-- 304
Query: 446 LVG-RWQMA-EEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS-MLRSRV 502
+G R A +L +++ DSL E S ML
Sbjct: 305 FIGVRCYEAYPNTSLPPSILE---------DSLENNE------------GVPSPML---- 339
Query: 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALN-DKLYVC 561
++ + + V+++ V + N P V + +N K V
Sbjct: 340 --SI-----------SNLTQ-EQVQDY--VNKT-NSHLP---AGKQVEISLVNGAKNLVV 379
Query: 562 GGYDGVSSLNTVECY------EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS 615
G SL + DQ RI S +K + F L
Sbjct: 380 SGP--PQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK---FSNRF------------LP 422
Query: 616 I---FDS--VERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIY-VCGGYDGAIFLQSVEM 669
+ F S + ++ + + + +Y G D L+ +
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP-----VYDTFDGSD----LRVLS- 472
Query: 670 YDPITDEWKMIASMNVMRSRV--ALVANMGKLWAI----GGYDGVSNLPTVEVYDPSTDS 723
I++ I ++R V + GG G+ L T D
Sbjct: 473 -GSISER---IVDC-IIRLPVKWETTTQFKATHILDFGPGGASGLGVL-THRNKD----- 521
Query: 724 WAFVAPMCAHEGGVGVGVIPI----CNPD 748
G GV VI NPD
Sbjct: 522 ------------GTGVRVIVAGTLDINPD 538
Score = 48.5 bits (115), Expect = 8e-06
Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 82/255 (32%)
Query: 380 LIRSSHECRDLVDEARDFHLM---------------PERRFLLAGEKTTPRRCNYVMGHI 424
L ++S +D+ + A D H GEK R NY I
Sbjct: 1635 LYKTSKAAQDVWNRA-DNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY-SAMI 1692
Query: 425 FAVGGLTKAGDSLSTVEVFDPLVGR-----WQMAEEETL--------------------- 458
F T L T ++F + ++ +E+ L
Sbjct: 1693 FE----TIVDGKLKTEKIFKEINEHSTSYTFR-SEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 459 -SNAVISTKSCLTKAGDSL-------STVEVFDPLVGRWQMAEAMSMLRSR---VGVAVM 507
S +I + AG SL S +V + + ++ R + VAV
Sbjct: 1748 KSKGLIPADATF--AGHSLGEYAALASLADVMS-------IESLVEVVFYRGMTMQVAVP 1798
Query: 508 KNRL----YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSA--VGAAALN--DKLY 559
++ L Y N ++ + + ++ V +V KR+ V N ++ Y
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQ-EALQYVVERVG----KRTGWLVEIVNYNVENQQY 1853
Query: 560 VCGG-YDGVSSLNTV 573
V G + ++ V
Sbjct: 1854 VAAGDLRALDTVTNV 1868
Score = 38.1 bits (88), Expect = 0.014
Identities = 51/322 (15%), Positives = 96/322 (29%), Gaps = 111/322 (34%)
Query: 153 QGIDAVAM--EALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF---- 206
QG M + A Q V + + K +
Sbjct: 1624 QGSQEQGMGMDLYKTS-----------------KAA-----QDVWNRADNHFKDTYGFSI 1661
Query: 207 ---HPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLM---VVASFLQMQKV-AD 259
NN ++ + F G+ I +N +++ +V L+ +K+ +
Sbjct: 1662 LDIVINNPVNLTIHFG----------GEKGK-RIR-ENYSAMIFETIVDGKLKTEKIFKE 1709
Query: 260 ACADFLKKRF-HPNNVLGIRQFADTLNCLQ-----LSEAADKYVQQYFHEVSMSDEFIG- 312
F +L QF Q + +AA + ++ + F G
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFT------QPALTLMEKAAFEDLKSKGL-IPADATFAGH 1762
Query: 313 -LGVNEVNDIVKRSELHLMSEEQVFEAVMRWVK------HNASER---APSLPRLLAAVR 362
LG E + ++ +MS E+++ V A R S ++A
Sbjct: 1763 SLG--EYAALASLAD--VMS----IESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA--- 1811
Query: 363 LPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRC---NY 419
++P +A + EAL + +V+ K T NY
Sbjct: 1812 ---INPGRVAASFSQEAL-------QYVVERV---------------GKRTGWLVEIVNY 1846
Query: 420 -VMGHIFAVGGLTKAGDSLSTV 440
V + G +A D+++ V
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNV 1868
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 7e-09
Identities = 73/599 (12%), Positives = 164/599 (27%), Gaps = 197/599 (32%)
Query: 80 KVDDQSFTCHRIVLAATIPYFQAMFTSDM-----AESKQREITMQGIDAVIVLAATIPYF 134
+ + + I + F+ F + + + ++ + ID +I+ +
Sbjct: 10 ETGEHQYQYKDI-----LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 135 QAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASF------ 188
+F SKQ E+ + ++ V + F+ S I ++ Q M+ +
Sbjct: 65 LRLF--WTLLSKQEEMVQKFVEEV-LRINYKFLMS---PIKTEQRQPSMMTRMYIEQRDR 118
Query: 189 --------------------------LQMQ--------------K---VADACADFLKKR 205
L+++ K D C + +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 206 FHPNNVLDYYVLFS-CRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADF 264
+ +++ C + E ++ + +Q L Q+ + +D
Sbjct: 179 KMDFKI--FWLNLKNCNSPETVL------------EMLQKL-----LYQIDPNWTSRSDH 219
Query: 265 ---LKKRFH-----PNNVLGIRQFADTLNCLQLSEAADKYVQQYF----------HEVSM 306
+K R H +L + + + L L L + F +
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 307 SDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLL 366
+D L I ++ ++V +++++ + LPR + P
Sbjct: 278 TD---FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVLTT-NPRR 329
Query: 367 -----------------SPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAG 409
H D++ T +I SS L P
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTT--IIESSLN-----------VLEPA------- 369
Query: 410 EKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAV--ISTKS 467
R+ + +F + + + W + + V + S
Sbjct: 370 ---EYRKM-FDRLSVFPP-------SAHIPTILLSLI---WFDVIKSDVMVVVNKLHKYS 415
Query: 468 CLTKAGDSLSTVEVFD-------PLVGRWQM----AEAMSMLRSRVGVAVMKNRL----Y 512
+ K ST+ + L + + + ++ ++ ++ L Y
Sbjct: 416 LVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 513 AFGGY--NGSERLSTVEEFDPVRRV-----W--NKVSPMCFKRSAVGAAA--LND-KLY 559
+ G+ E E R V + K+ +A G+ L K Y
Sbjct: 475 SHIGHHLKNIEH---PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Score = 50.6 bits (120), Expect = 2e-06
Identities = 69/490 (14%), Positives = 148/490 (30%), Gaps = 165/490 (33%)
Query: 1 MDPLKHPSLEPNPDTSTVDYIRNLKM----SKLIKRSVS-PSFVTSTTSTMDECLVFQQL 55
M P+K +P+ T R+ ++ K +VS + + L +L
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYNVSRLQPYL----KLRQAL--LEL 147
Query: 56 D----LFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAES 111
+ G + GK + +A D+ S
Sbjct: 148 RPAKNVLIDG---VLGS---GK-----------T------WVAL-----------DVCLS 173
Query: 112 KQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEAL---INFVY 168
+ + M +F ++ E ++ ++ L I+ +
Sbjct: 174 YKVQCKMDF---------------KIFWLNLKNCNSPETVLE-----MLQKLLYQIDPNW 213
Query: 169 SGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN------NVLDYYVL----F 218
+ R HS N++ L++ + LK + + N NV +
Sbjct: 214 TSRSD-HSSNIK--------LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 219 SCRAM---------EALINFAYSGRVTIHSQNV----QSLMVVASFLQMQKVAD----AC 261
SC+ + + L + H + ++ +L + D
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC-RPQDLPREVL 323
Query: 262 ADFLKKRFHPN--NVLG--IRQFADT------LNCLQLSEAADKYV--------QQYFHE 303
+P +++ IR T +NC +L+ + + ++ F
Sbjct: 324 ------TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 304 VSM--SDEFIGLGVNEV--NDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLA 359
+S+ I + + D++K + ++++ + V + K E S+P +
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK----ESTISIPSIYL 433
Query: 360 AVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARD--------FHL----MPER---- 403
+++ L + + L + I + + DL+ D HL PER
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 404 -------RFL 406
RFL
Sbjct: 494 RMVFLDFRFL 503
Score = 38.7 bits (89), Expect = 0.008
Identities = 31/243 (12%), Positives = 67/243 (27%), Gaps = 74/243 (30%)
Query: 363 LPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMG 422
L + ++ + +C+D+ D + E ++ K +
Sbjct: 22 LSVFEDAFVDN-----------FDCKDVQDMPKSILSKEEIDHII-MSKDAVSGTLRLFW 69
Query: 423 HIFAVGGLTKAGDSLSTVEVF-----DP----LVGRWQMAEEETLSNAVISTKSCLTKAG 473
+ L+K V+ F L+ + E +++ T+ + +
Sbjct: 70 TL-----LSKQE---EMVQKFVEEVLRINYKFLMSPIK---TEQRQPSMM-TRMYIEQRD 117
Query: 474 DSLSTVEVFDPL-VGR----WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEE 528
+ +VF V R ++ +A+ LR V + G
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----DGVLG------------ 160
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
K + V C + LN C P+ +++
Sbjct: 161 --------------SGK-TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET----VLEM 201
Query: 589 MQK 591
+QK
Sbjct: 202 LQK 204
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 36.9 bits (85), Expect = 0.025
Identities = 31/135 (22%), Positives = 51/135 (37%), Gaps = 26/135 (19%)
Query: 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI 662
S V+A+ G I+ YDP+ D T K R GVA K+YV G +DG +
Sbjct: 87 SVVHAIDTRTGNRIW----TYDPQIDRSTGFKGCCDVVNR-GVALWKGKVYV-GAWDGRL 140
Query: 663 F---------LQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPT 713
+ ++ + + V + +V ++ N G + + GY
Sbjct: 141 IALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKV-IIGNGGAEYGVRGY-------- 191
Query: 714 VEVYDPST--DSWAF 726
+ YD T W +
Sbjct: 192 ITAYDAETGERKWRW 206
>3jro_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum, ER-golgi transport, membrane,
mRNA transport; 4.00A {Saccharomyces cerevisiae}
Length = 753
Score = 36.5 bits (84), Expect = 0.034
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 656 GGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA----NMGKLWAIGGYDGVSNL 711
YDG V ++ W IA V + V V G L + DG
Sbjct: 73 CSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---- 123
Query: 712 PTVEVYDPSTDSWAFVAPMCAHEGGV 737
V V + + + AH GV
Sbjct: 124 -KVSVVEFKENGTTSPIIIDAHAIGV 148
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31;
beta propeller, alpha solenoid; 2.35A {Saccharomyces
cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Length = 297
Score = 34.9 bits (81), Expect = 0.080
Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 656 GGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA----NMGKLWAIGGYDGVSNL 711
YDG V ++ W IA V + V V G + + DG
Sbjct: 73 CSYDG-----KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---- 123
Query: 712 PTVEVYDPSTDSWAFVAPMCAHEGGV 737
V V + + + AH GV
Sbjct: 124 -KVSVVEFKENGTTSPIIIDAHAIGV 148
>3jrp_A Fusion protein of protein transport protein SEC13 and nucleoporin
NUP145; protein complex, cytoplasmic vesicle,
endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Length = 379
Score = 35.0 bits (81), Expect = 0.086
Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 14/86 (16%)
Query: 656 GGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA----NMGKLWAIGGYDGVSNL 711
YDG V ++ W IA V + V V G L + DG
Sbjct: 75 CSYDG-----KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---- 125
Query: 712 PTVEVYDPSTDSWAFVAPMCAHEGGV 737
V V + + + AH GV
Sbjct: 126 -KVSVVEFKENGTTSPIIIDAHAIGV 150
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 31.6 bits (72), Expect = 0.94
Identities = 6/41 (14%), Positives = 11/41 (26%), Gaps = 5/41 (12%)
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
+ VE+Y+ + W H+ V
Sbjct: 23 RTEFVTTTATN-----QVELYEQDGNGWKHARTFSDHDKIV 58
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP;
transcription, beta-propeller; HET: PGE PG4 MES 2PE;
2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Length = 795
Score = 31.5 bits (72), Expect = 1.2
Identities = 21/116 (18%), Positives = 41/116 (35%), Gaps = 28/116 (24%)
Query: 622 RYDPKTDEWTSVKPMLTKRCRL----GVAAL-----NNKIYVCGGYDGAIFL-----QSV 667
Y+P T +TS + R + A+ + +Y+ G + G + + V
Sbjct: 381 LYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYI-GTHAGGLSILHRNSGQV 439
Query: 668 EMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723
E ++ + + + NV L G LW +G + ++P S
Sbjct: 440 ENFNQRNSQ---LVNENV---YAILPDGEGNLW-LGTLSALV------RFNPEQRS 482
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 30.7 bits (70), Expect = 1.7
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
AI + V +Y+ S + W V + H G V
Sbjct: 20 RTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEHNGQV 55
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.4 bits (66), Expect = 3.9
Identities = 15/80 (18%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616
++ +D V+ + Y ++D ++ + + GGV D + GG DG +
Sbjct: 99 EIAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWFYGGRDGPVV 158
Query: 617 FDSVERYDPKT-DEWTSVKP 635
++ + + +W V+P
Sbjct: 159 WNEQKGEEKLVIMDWREVEP 178
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 29.6 bits (66), Expect = 5.2
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 312 GLGV-------NEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRL 363
GLGV D+ M Q +E + + + +P + L
Sbjct: 338 GLGVERLAMISGNFADV------REMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDL 390
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 29.2 bits (66), Expect = 5.3
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
G A D +V+++D +A + HEG V
Sbjct: 25 GTRLATCSSDR-----SVKIFDVRNGGQILIADLRGHEGPV 60
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A
{Saccharomyces cerevisiae}
Length = 386
Score = 29.3 bits (65), Expect = 5.5
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 15/136 (11%)
Query: 239 SQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQ 298
N+ ++ LQ++ + N + F LN Q+ KY
Sbjct: 265 RPNLIQIIQAVKILQLKI------------SNLNEFKLLFDFWYALNPAQIQAILLKYKP 312
Query: 299 QYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLL 358
E + +E + N I + + E + A K++ ++ +
Sbjct: 313 ANKGEAGVPNEILN---YLANVIKRENLSLPGKMEIMLSAQFDSAKNHLRYDTSAITQNS 369
Query: 359 AAVRLPLLSPHYLADR 374
L +S DR
Sbjct: 370 NTEGLATVSKIIKLDR 385
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 28.8 bits (64), Expect = 7.7
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 312 GLGV-------NEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRL 363
GLGV D+ M Q +E + + + +P + L
Sbjct: 338 GLGVERLAMISGNFADV------REMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDL 390
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 28.3 bits (64), Expect = 9.7
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
+L A YD TV++Y D W A + HE V
Sbjct: 162 QELLASASYDD-----TVKLYREEEDDWVCCATLEGHESTV 197
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.4 bits (63), Expect = 9.9
Identities = 10/59 (16%), Positives = 17/59 (28%), Gaps = 13/59 (22%)
Query: 312 GLGV-------NEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRL 363
GLGV D+ M Q +E + + + +P + L
Sbjct: 338 GLGVERLAMISGNFADV------REMVYPQFYEHKLNDRNVASMVKLDKVPVMDEIYDL 390
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.399
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,746,330
Number of extensions: 726004
Number of successful extensions: 1976
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1657
Number of HSP's successfully gapped: 136
Length of query: 748
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 647
Effective length of database: 3,881,772
Effective search space: 2511506484
Effective search space used: 2511506484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.1 bits)