RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10286
(748 letters)
>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1,
KEAP1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 140 bits (353), Expect = 7e-38
Identities = 101/273 (36%), Positives = 149/273 (54%), Gaps = 4/273 (1%)
Query: 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEE 528
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++
Sbjct: 15 RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDC 74
Query: 529 FDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
++P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V
Sbjct: 75 YNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAP 134
Query: 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
M R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L
Sbjct: 135 MLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL 194
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
+N IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG
Sbjct: 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH 254
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
+ L +VE YDP TD+W+ V M + GVGV V
Sbjct: 255 TFLDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 287
Score = 120 bits (300), Expect = 9e-31
Identities = 102/282 (36%), Positives = 152/282 (53%), Gaps = 14/282 (4%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNA------------VISTKSCLTK 471
I+ GG SLS +E ++P G W + + + + ++
Sbjct: 7 IYTAGGYF--RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 64
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
S ++ ++P+ +W MS+ R+R+GV V+ +YA GG +G ++VE ++P
Sbjct: 65 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 124
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P++++WR++ +M
Sbjct: 125 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 184
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
RS GV + +YA GG+DG +SVERYD +T+ WT V PM +R LG+ +
Sbjct: 185 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGR 244
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV 693
IYV GGYDG FL SVE YDP TD W + M RS V +
Sbjct: 245 IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGVA 286
Score = 104 bits (259), Expect = 2e-25
Identities = 89/238 (37%), Positives = 129/238 (54%), Gaps = 5/238 (2%)
Query: 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD--- 565
+Y GGY + LS +E ++P W +++ + RS + + LY GG +
Sbjct: 5 RLIYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSP 63
Query: 566 -GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYD 624
G + + ++CY P +QW M R+ GV D ++YA+GG G +SVERY+
Sbjct: 64 DGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYE 123
Query: 625 PKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN 684
P+ DEW V PMLT+R +GVA LN +Y GG+DG L S E Y P +EW+MI +MN
Sbjct: 124 PERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN 183
Query: 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
+RS + ++A GGYDG L +VE YD T++W FVAPM +G+ V
Sbjct: 184 TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVH 241
Score = 82.6 bits (202), Expect = 6e-18
Identities = 59/182 (32%), Positives = 89/182 (48%), Gaps = 5/182 (2%)
Query: 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG--- 610
+ +Y GGY SL+ +E Y P W + +Q RS +YA+GG
Sbjct: 3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNN 61
Query: 611 -HDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
DG + +++ Y+P T++W+ PM R R+GV ++ IY GG G I SVE
Sbjct: 62 SPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVER 121
Query: 670 YDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729
Y+P DEW ++A M R V + L+A+GG+DG + L + E Y P + W +
Sbjct: 122 YEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITA 181
Query: 730 MC 731
M
Sbjct: 182 MN 183
Score = 30.3 bits (66), Expect = 0.74
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 417 CNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQM 452
G I+ +GG L +VE +DP W
Sbjct: 238 ITVHQGRIYVLGGYD-GHTFLDSVECYDPDTDTWSE 272
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 387
Score = 111 bits (278), Expect = 5e-27
Identities = 41/350 (11%), Positives = 94/350 (26%), Gaps = 52/350 (14%)
Query: 422 GHIFAVGGLTK-----AGDSLSTVEVFDPLVGRWQMAEE-------ETLSNAVISTKSCL 469
G + + ++ +DP G ++ +
Sbjct: 31 GRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIV 90
Query: 470 TKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN--RLYAFGGYNGSERLSTVE 527
G+ ++D W M + R A M + G ++G E
Sbjct: 91 VTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGE 150
Query: 528 EFDPVRRVWNKVSPM----CFKRSAVGAAALNDKLYVCGGYDGV-----SSLNTVECYEP 578
+ P + W + G ++ ++ G G S Y
Sbjct: 151 VYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS 210
Query: 579 DKDQWRIVKSMQKHRSAGGV-----------------IAFDSYVYALGGHDGLSIFDSVE 621
+ Q +R S Y + ++
Sbjct: 211 GSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG 270
Query: 622 RYDPKTDEWTSVKPMLTKRCR-LGVAALNNKIYVCGG------YDGAIFLQSVEMYDPIT 674
+ + + R V + ++ GG ++ + + + E+Y P
Sbjct: 271 EPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQ 330
Query: 675 DEWKMIASMNVMRSR--VALVANMGKLWAIGG---YDGVSNLPTVEVYDP 719
D + +++R ++L+ G+++ GG D +N +++ P
Sbjct: 331 DTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTTNHFDAQIFTP 380
Score = 97.6 bits (241), Expect = 3e-22
Identities = 35/296 (11%), Positives = 77/296 (26%), Gaps = 40/296 (13%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSR--VGVAVMKNRLYAFGGYNGSERLSTVEEF 529
+ ++ +DP G G+++ N G N + +
Sbjct: 47 SPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA---KKTSLY 103
Query: 530 DPVRRVWNKVS--PMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVK 587
D W + + + + G + G E Y P W +
Sbjct: 104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLP 163
Query: 588 SMQKH----RSAGGVIAFDSYVYALGGHDGLSIF-----DSVERYDPKTDEWTSVKPMLT 638
+ + + G+ D++ + G G Y + + S +
Sbjct: 164 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 223
Query: 639 KR-----CRLGVAAL------------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681
R G A + + Y + ++ +
Sbjct: 224 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 283
Query: 682 SMNV-MRSRVALVANMGKLWAIGG------YDGVSNLPTVEVYDPSTDSWAFVAPM 730
+ ++V G + GG ++ + + T E+Y P D++ P
Sbjct: 284 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN 339
Score = 96.0 bits (237), Expect = 8e-22
Identities = 41/311 (13%), Positives = 80/311 (25%), Gaps = 50/311 (16%)
Query: 412 TTPRRCNYVMGHIFAVGG--LTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSC- 468
T + + G G + G+ ++D W + ++ S+ +
Sbjct: 70 TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS 129
Query: 469 ---------LTKAGDSLSTVEVFDPLVGRWQMAEAMSM----LRSRVGVAVMKNRLYAFG 515
G EV+ P W + + G+ N + FG
Sbjct: 130 DGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFG 189
Query: 516 GYNGSE-----RLSTVEEFDPVRRVWNKVSPMCFKR---------SAVGAAALNDKLYVC 561
GS + + R +AV A+ K+
Sbjct: 190 WKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 249
Query: 562 GGYDGVSSLNTVECYEP--------DKDQWRIVKSMQK-HRSAGGVIAFDSYVYALGGHD 612
GG + + + V+ D + GG
Sbjct: 250 GGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR 309
Query: 613 GLSIFD------SVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGG---YDGA 661
F+ + E Y P+ D + P R ++ L + +++ GG D
Sbjct: 310 RGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCT 369
Query: 662 IFLQSVEMYDP 672
+++ P
Sbjct: 370 TNHFDAQIFTP 380
Score = 91.8 bits (226), Expect = 2e-20
Identities = 29/224 (12%), Positives = 59/224 (26%), Gaps = 24/224 (10%)
Query: 536 WNKVSPMCFKRSAVGAAALNDKLYVCGGYD------GVSSLNTVECYEPDKDQWRIVKSM 589
W + +A + ++ + Y + ++P
Sbjct: 11 WGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT 70
Query: 590 QKHRS---AGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA 646
G + + + GG+D YD +D W M R A
Sbjct: 71 VTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARGYQSSA 126
Query: 647 AL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM----RSRVALVANMGKLW 700
+ + G + G +F ++ E+Y P + W + + V + L + W
Sbjct: 127 TMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAW 186
Query: 701 AIGGYDGV-----SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739
G G + Y + ++ G
Sbjct: 187 LFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPD 230
Score = 89.9 bits (221), Expect = 8e-20
Identities = 36/225 (16%), Positives = 64/225 (28%), Gaps = 24/225 (10%)
Query: 484 PLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGY------NGSERLSTVEEFDPVRRVWN 537
P +GRW + ++ + + R+ + Y ++ +DP + +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 538 KVSPMCFKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS 594
+ K N ++ V GG D Y+ D W MQ R
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 595 AGGVIAFD--SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRL----GVAAL 648
G G + E Y P + WTS+ G+
Sbjct: 122 YQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS 181
Query: 649 NNKIYVCGGYDGAIF-----LQSVEMYDPITDEWKMIASMNVMRS 688
+N ++ G G++F Y + + K R
Sbjct: 182 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRG 226
Score = 83.7 bits (205), Expect = 8e-18
Identities = 31/165 (18%), Positives = 47/165 (28%), Gaps = 15/165 (9%)
Query: 577 EPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG------HDGLSIFDSVERYDPKTDEW 630
+P +W + +A + V +DP T
Sbjct: 5 QPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV 64
Query: 631 TSVKPMLTKR---CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687
+ +TK C N +I V GG D +YD +D W M V R
Sbjct: 65 SDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKK----TSLYDSSSDSWIPGPDMQVAR 120
Query: 688 SRVALVANMGK--LWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
+ G + G EVY PS+ +W +
Sbjct: 121 GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNA 165
Score = 71.4 bits (173), Expect = 1e-13
Identities = 19/123 (15%), Positives = 32/123 (26%), Gaps = 13/123 (10%)
Query: 625 PKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF------LQSVEMYDPITDEWK 678
P W + + + ++ + Y F + +DP T
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 679 MIASMNVMRSRV---ALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEG 735
+ G++ GG D +YD S+DSW M G
Sbjct: 66 DRTVTVTKHDMFCPGISMDGNGQIVVTGGNDA----KKTSLYDSSSDSWIPGPDMQVARG 121
Query: 736 GVG 738
Sbjct: 122 YQS 124
Score = 58.3 bits (139), Expect = 1e-09
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 6/81 (7%)
Query: 672 PITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP------TVEVYDPSTDSWA 725
P W + ++ + A+ G++ Y + +DPST +
Sbjct: 6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS 65
Query: 726 FVAPMCAHEGGVGVGVIPICN 746
G+ N
Sbjct: 66 DRTVTVTKHDMFCPGISMDGN 86
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 122
Score = 87.5 bits (216), Expect = 3e-21
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 34/140 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++FT + + I+
Sbjct: 16 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPE 75
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
L++F+Y+ R+ + N+ ++M
Sbjct: 76 ----------------------------------GFNILLDFMYTSRLNLREGNIMAVMA 101
Query: 185 VASFLQMQKVADACADFLKK 204
A +LQM+ V D C F+K
Sbjct: 102 TAMYLQMEHVVDTCRKFIKA 121
Score = 49.0 bits (116), Expect = 1e-07
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 204 KRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACAD 263
KR LD + + L++F Y+ R+ + N+ ++M A +LQM+ V D C
Sbjct: 60 KRNLSVINLDPEI--NPEGFNILLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRK 117
Query: 264 FLKK 267
F+K
Sbjct: 118 FIKA 121
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 83.9 bits (207), Expect = 7e-20
Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 39/139 (28%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
++R G LCDV I VD Q F HR VLA T F+ +F +
Sbjct: 19 ANQMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILFHRNS---------------- 62
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ T+ + + ++ + Y+ + ++++ L+
Sbjct: 63 -----------------------QHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLY 99
Query: 185 VASFLQMQKVADACADFLK 203
A L+++ + + C L+
Sbjct: 100 AAEILEIEYLEEQCLKMLE 118
Score = 53.1 bits (127), Expect = 3e-09
Identities = 11/70 (15%), Positives = 32/70 (45%)
Query: 197 ACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256
+ + FH N+ S + + ++ +AY+ + ++++ L+ A L+++
Sbjct: 49 CTSKMFEILFHRNSQHYTLDFLSPKTFQQILEYAYTATLQAKAEDLDDLLYAAEILEIEY 108
Query: 257 VADACADFLK 266
+ + C L+
Sbjct: 109 LEEQCLKMLE 118
>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase,
N-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 573
Score = 34.2 bits (77), Expect = 0.064
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 7/127 (5%)
Query: 555 NDKLYVCGGYDGVSSLN-----TVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALG 609
+ +YV + V +++ + Y+P D+ K + G +
Sbjct: 77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW 136
Query: 610 GHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEM 669
+++ + + + + K LT V K+ + G +
Sbjct: 137 DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITA 194
Query: 670 YDPITDE 676
YD T E
Sbjct: 195 YDAETGE 201
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 31.4 bits (69), Expect = 0.45
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 5/41 (12%)
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGV 737
AI + V +Y+ S + W V + H G V
Sbjct: 19 RTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEHNGQV 54
Score = 28.7 bits (62), Expect = 2.5
Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 16/181 (8%)
Query: 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHD 612
+ + V YE ++W V +++H + + DS G D
Sbjct: 18 DRTQIAICPNNH-----EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72
Query: 613 GLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDP 672
+ V +T + T V + + R A N K + G I + E +
Sbjct: 73 RNAY---VWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 673 ITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCA 732
+ + V ++ S ++
Sbjct: 130 WWVCKHIKKPIRST------VLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTP 183
Query: 733 H 733
Sbjct: 184 W 184
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 143
Score = 29.8 bits (67), Expect = 0.55
Identities = 15/122 (12%), Positives = 36/122 (29%), Gaps = 9/122 (7%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKV-ADACADFLKKRFHPNNVLGIRQF 280
++E +N A ++ Q+ ++ + L +
Sbjct: 1 SLELWLNKATDPSMS--EQDWSAIQNFCEQVNTDPNGPTHAPWLLAHKIQSPQE------ 52
Query: 281 ADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVM 340
+ L L + E + + FH F+ + ++ S + +V E +
Sbjct: 53 KEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILF 112
Query: 341 RW 342
W
Sbjct: 113 SW 114
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 30.2 bits (66), Expect = 0.78
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI 662
++ Y D++ D +++ T+ P+ + ++ K+YV + +
Sbjct: 2 TFAYIANSES-----DNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDV 56
Query: 663 FLQSVEMYDPITDEWKMIASMNVM 686
+ + I + V
Sbjct: 57 SIIDTATNNVIATVPAGSSPQGVA 80
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 151
Score = 29.4 bits (66), Expect = 0.93
Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 16/138 (11%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKV-ADACADFLKKRF-HPNNVLGIRQ 279
++E+ +N A + + ++ + ++ + + L + P ++
Sbjct: 2 SLESWLNKATNP--SNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQ- 58
Query: 280 FADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAV 339
L + EA K + FH F +NE+ +V L E+V V
Sbjct: 59 ------ALTVLEACMKNCGRRFHNEVGKFRF----LNELIKVVSPKYLGDRVSEKVKTKV 108
Query: 340 MRWVKHNASERAPSLPRL 357
+ + + + P ++
Sbjct: 109 IELLY-SWTMALPEEAKI 125
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 288 QLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSEL-HLMSEEQVFEAVMRWVKHN 346
L + A +++ + E + I ++++ +K + EE ++ A M W N
Sbjct: 1 HLFKEAQAFIENMYKECHYETQIINKRLHDIELEIKETGTYTHTEEELIYGAKMAWRNSN 60
>d2cmda2 d.162.1.1 (A:146-312) Malate dehydrogenase {Escherichia
coli [TaxId: 562]}
Length = 167
Score = 27.4 bits (60), Expect = 3.9
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 597 GVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCG 656
G + V +GGH G++I + + + V LTKR + + G
Sbjct: 18 GKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVAD-LTKRIQNAGTEVVEAKAGGG 76
Query: 657 GYDGAIFLQSVEMYDPITDEWKMIASM 683
++ + + + +
Sbjct: 77 SATLSMGQAAARFGLSLVRALQGEQGV 103
>d1guqa1 d.13.1.2 (A:2-177) Galactose-1-phosphate
uridylyltransferase {Escherichia coli [TaxId: 562]}
Length = 176
Score = 26.9 bits (59), Expect = 5.8
Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 617 FDSVE----RYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL---QSVEM 669
F+ V+ RY+P T +W V P KR G K V +D FL
Sbjct: 3 FNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQ-VLPAHDPDCFLCAGNVRVT 61
Query: 670 YDPITDEW 677
D D
Sbjct: 62 GDKNPDYT 69
>d2pbza1 c.30.1.8 (A:4-99) 5-formaminoimidazole-4-carboxamide
ribonucleotide synthetase PurP {Thermococcus
kodakaraensis [TaxId: 311400]}
Length = 96
Score = 26.1 bits (58), Expect = 6.6
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 672 PITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPT 713
PI D+ + M + + +V G A G + +
Sbjct: 40 PIVDDLVVAEEMTSILNDDGIVVPHGSFVAYLGIEAIEKAKA 81
>d1czna_ c.23.5.1 (A:) Flavodoxin {Synechococcus elongatus PCC 7942
[TaxId: 1140]}
Length = 169
Score = 26.6 bits (58), Expect = 7.6
Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 20/165 (12%)
Query: 192 QKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYS----GRVTIHSQNVQSLMV 247
Q +A++ + S + G + + + +
Sbjct: 15 QTIAESIQQEFGGESIVDLNDIANADASDLNAYDYLIIGCPTWNVGELQSDWEGIYDDLD 74
Query: 248 VASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMS 307
+ Q +KVA + + N + + ++ L ++ Y S +
Sbjct: 75 -SVNFQGKKVA-YFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGYWPIEGYDFNESKA 132
Query: 308 ---DEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASE 349
++F+GL ++E N + + WV SE
Sbjct: 133 VRNNQFVGLAIDEDNQ-----------PDLTKNRIKTWVSQLKSE 166
>d1iyjb3 b.40.4.3 (B:2599-2731) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 133
Score = 26.4 bits (58), Expect = 8.0
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 627 TDEWTSVK----PMLTKRCRLGVAALNNKIYVCGG 657
TD W +VK P L + G + KI G
Sbjct: 54 TDGWYAVKAQLDPPLLALVKSGRLTVGQKIITQGA 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.134 0.399
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,801,142
Number of extensions: 128904
Number of successful extensions: 394
Number of sequences better than 10.0: 1
Number of HSP's gapped: 357
Number of HSP's successfully gapped: 38
Length of query: 748
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 656
Effective length of database: 1,144,436
Effective search space: 750750016
Effective search space used: 750750016
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.3 bits)