BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10289
(497 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 121/301 (40%), Gaps = 57/301 (18%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQ 115
CP C C+ + R ++C R ++A +P + + T L + +EN + F+
Sbjct: 6 CPAACSCS-NQASR--VICTRRELAE-VP-ASIPVNTRYLNL---QENSIQVIRTDTFKH 57
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+HLE L ++ + + I F G+PSL L L N +T++ F+ + L+EL+L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKD 235
IESIPS F + LR L D
Sbjct: 118 PIESIPSYAFNRVPSLRRL----------------------------------------D 137
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGN 295
+ ELK LE I+ + L +L YL+LG GN
Sbjct: 138 LGELKR-------LEYISEAAFEGLVNLRYLNLG--MCNLKDIPNLTALVRLEELELSGN 188
Query: 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355
+I SF L+ L L ++A + AF +L +L EL++S+N L L F P
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 356 I 356
+
Sbjct: 249 L 249
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
P LEEL ++ + + I F G+ SLR L L H + ++ F + +L+EL
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
L N + S+P +F L L + L HN
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N VI +F L++L L +N + K+ AF L +L L++ N+L + +F+
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFE 104
Query: 355 PIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNL 414
+ + LR+L + N I+ I + F+ +L++LNL
Sbjct: 105 YL-SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
NL+DI NL + ++L L+LS N+
Sbjct: 164 GMCNLKDIPNL--TALVRLEELELSGNRL 190
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 107/300 (35%), Gaps = 75/300 (25%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
RYLNL N+I + FK + +L+ L L N + I F L L L L NR++
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 204 LAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADL 263
+ + F+ + +L+ R+ +E+I ++ + L
Sbjct: 98 ------------------------VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 264 IYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAK 323
LDLG + I E +F L+ L L L
Sbjct: 134 RRLDLGELK-----------------------RLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 324 VTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXXXXXXX 383
+ T L L EL++S N+LD + SF + SLR L + +
Sbjct: 171 IPN--LTALVRLEELELSGNRLDLIRPGSFQGL-TSLRKLWLMHAQV------------- 214
Query: 384 XXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
I + F L+ LNLS NNL + + L+ +L + L+ N +
Sbjct: 215 ------------ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 78/301 (25%), Positives = 121/301 (40%), Gaps = 57/301 (18%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQ 115
CP C C+ + R ++C R ++A +P + + T L + +EN + F+
Sbjct: 6 CPAACSCS-NQASR--VICTRRELAE-VP-ASIPVNTRYLNL---QENSIQVIRTDTFKH 57
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+HLE L ++ + + I F G+PSL L L N +T++ F+ + L+EL+L N
Sbjct: 58 LRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNN 117
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKD 235
IESIPS F + LR L D
Sbjct: 118 PIESIPSYAFNRVPSLRRL----------------------------------------D 137
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGN 295
+ ELK LE I+ + L +L YL+LG GN
Sbjct: 138 LGELKR-------LEYISEAAFEGLVNLRYLNLG--MCNLKDIPNLTALVRLEELELSGN 188
Query: 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355
+I SF L+ L L ++A + AF +L +L EL++S+N L L F P
Sbjct: 189 RLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTP 248
Query: 356 I 356
+
Sbjct: 249 L 249
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
P LEEL ++ + + I F G+ SLR L L H + ++ F + +L+EL
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
L N + S+P +F L L + L HN
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N VI +F L++L L +N + K+ AF L +L L++ N+L + +F+
Sbjct: 45 NSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFE 104
Query: 355 PIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNL 414
+ + LR+L + N I+ I + F+ +L++LNL
Sbjct: 105 YL-SKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNL 163
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
NL+DI NL + ++L L+LS N+
Sbjct: 164 GMCNLKDIPNL--TALVRLEELELSGNRL 190
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 67/300 (22%), Positives = 107/300 (35%), Gaps = 75/300 (25%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
RYLNL N+I + FK + +L+ L L N + I F L L L L NR++
Sbjct: 38 RYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTT 97
Query: 204 LAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADL 263
+ + F+ + +L+ R+ +E+I ++ + L
Sbjct: 98 ------------------------VPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 264 IYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAK 323
LDLG + I E +F L+ L L L
Sbjct: 134 RRLDLGELK-----------------------RLEYISEAAFEGLVNLRYLNLGMCNLKD 170
Query: 324 VTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXXXXXXX 383
+ T L L EL++S N+LD + SF + SLR L + +
Sbjct: 171 IPN--LTALVRLEELELSGNRLDLIRPGSFQGL-TSLRKLWLMHAQV------------- 214
Query: 384 XXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
I + F L+ LNLS NNL + + L+ +L + L+ N +
Sbjct: 215 ------------ATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPW 262
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 125/308 (40%), Gaps = 59/308 (19%)
Query: 50 SSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTI 109
+ ++ CP +C C+ +++C R ++ +P G + T +L + EN +
Sbjct: 29 TGSAQTCPSVCSCS---NQFSKVICVRKNLRE-VPDG-ISTNTRLLNL---HENQIQIIK 80
Query: 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169
F+ +HLE L ++ + I I F G+ +L L L N +T++ + F + L+E
Sbjct: 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAH-NRISKLAPRXXXXXXXXXXXXXXYNDIVEI 228
L+L N IESIPS F + LR L L R+S I
Sbjct: 141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY------------------------I 176
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXX 288
+ F+ + L+ C L I L LI LD
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLREI-----PNLTPLIKLD--------------------- 210
Query: 289 XXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRL 348
GNH I SF LQ L + ++++ + AF NL +L+E+++++N L L
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270
Query: 349 EVASFDPI 356
F P+
Sbjct: 271 PHDLFTPL 278
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 27/157 (17%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
NH I +F+ L L L NRL + AF L+ L EL + N ++ + +F+
Sbjct: 98 NHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157
Query: 355 PIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNL 414
I SLR L + + ++Y I +G F+ +L++LNL
Sbjct: 158 RIP-SLRRLDLG----------------------ELKRLSY--ISEGAFEGLSNLRYLNL 192
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
+ NL++I NL IKL LDLS N S+
Sbjct: 193 AMCNLREIPNL--TPLIKLDELDLSGNHLSAIRPGSF 227
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 57/302 (18%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQ 115
CP +C C+ ++VC R ++ +P G + T L ++ EN + F+
Sbjct: 46 CPSVCSCS---NQFSKVVCTRRGLSE-VPQG-IPSNTRYLNLM---ENNIQMIQADTFRH 97
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
HLE L + + I I F G+ SL L L N +T + F+ + L+EL+L N
Sbjct: 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNN 157
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKD 235
IESIPS F NR+ L + D
Sbjct: 158 PIESIPSYAF-------------NRVPSL---------------------------MRLD 177
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGN 295
+ ELK LE I+ + L +L YL+LG GN
Sbjct: 178 LGELKK-------LEYISEGAFEGLFNLKYLNLG--MCNIKDMPNLTPLVGLEELEMSGN 228
Query: 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355
HFP I SF L+ L + ++++ + AF L +L+EL++++N L L F P
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Query: 356 IE 357
+
Sbjct: 289 LR 290
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 43/81 (53%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
LEEL ++ + P I F G+ SL+ L + ++ ++ + F G+ +L EL L N +
Sbjct: 220 LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS 279
Query: 179 SIPSSVFMHLSDLRVLSLAHN 199
S+P +F L L L L HN
Sbjct: 280 SLPHDLFTPLRYLVELHLHHN 300
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 3/157 (1%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N+ +I +F L+VL L RN + ++ AF L +L L++ N L + +F+
Sbjct: 85 NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFE 144
Query: 355 PIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNL 414
+ + LR+L + N I+ I +G F+ +L++LNL
Sbjct: 145 YL-SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL 203
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
N++D+ NL + L L++S N F S+
Sbjct: 204 GMCNIKDMPNL--TPLVGLEELEMSGNHFPEIRPGSF 238
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 11/105 (10%)
Query: 73 VCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLT-IGP-IFQQFQHLEELHITNSFIP 130
+C DM N P+ +G E L E + NH I P F L++L + NS +
Sbjct: 205 MCNIKDMPNLTPL----VGLEEL-----EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255
Query: 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
I + F G+ SL LNL HNN++SL F + L EL+L N
Sbjct: 256 LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 2/202 (0%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYN-DIV 226
Q ++L N+I +P++ F +L +L L N ++++ N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXX 286
++P F + L T CGL+ + P ++ LA L YL L N
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154
Query: 287 XXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
GN + E++F L L L +NR+A V AF +L L+ L + N L
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Query: 347 RLEVASFDPIENSLRDLKISGN 368
L + P+ +L+ L+++ N
Sbjct: 215 ALPTEALAPLR-ALQYLRLNDN 235
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 91 GTEVLKIVPSEENPNHLTIGP-IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLT 149
G +L+ + +N ++ P F L LH+ + +G F G+ +L+YL L
Sbjct: 78 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137
Query: 150 HNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXX 209
N + +L D F+ + NL L+L N+I S+P F L L L L NR++ + P
Sbjct: 138 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197
Query: 210 XXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFK 243
N++ + E ++ L+ +
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 231
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 113 FQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F LE+L ++ N+ + ++ F G+ L L+L + L F+G+ LQ LY
Sbjct: 76 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 135
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPE 231
L N ++++P F L +L L L NRIS + R N + ++P
Sbjct: 136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 195
Query: 232 IFKDIQELKTF 242
F+D+ L T
Sbjct: 196 AFRDLGRLMTL 206
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN-KLDRLEVAS 352
GN + SF + L +L L N LA++ AFT L L +LD+S N +L ++ A+
Sbjct: 41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 100
Query: 353 FDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFL 412
F + L L + +Q ++ GLF+ LQ+L
Sbjct: 101 FHGL-GRLHTLHLDRCGLQ-------------------------ELGPGLFRGLAALQYL 134
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
L N LQ + + ++ LTHL L N+ E+++
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 2/202 (0%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYN-DIV 226
Q ++L N+I +P++ F +L +L L N ++++ N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXX 286
++P F + L T CGL+ + P ++ LA L YL L N
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 153
Query: 287 XXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
GN + E++F L L L +NR+A V AF +L L+ L + N L
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 213
Query: 347 RLEVASFDPIENSLRDLKISGN 368
L + P+ +L+ L+++ N
Sbjct: 214 ALPTEALAPLR-ALQYLRLNDN 234
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 1/154 (0%)
Query: 91 GTEVLKIVPSEENPNHLTIGP-IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLT 149
G +L+ + +N ++ P F L LH+ + +G F G+ +L+YL L
Sbjct: 77 GLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 136
Query: 150 HNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXX 209
N + +L D F+ + NL L+L N+I S+P F L L L L NR++ + P
Sbjct: 137 DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 196
Query: 210 XXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFK 243
N++ + E ++ L+ +
Sbjct: 197 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLR 230
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 113 FQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F LE+L ++ N+ + ++ F G+ L L+L + L F+G+ LQ LY
Sbjct: 75 FTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY 134
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPE 231
L N ++++P F L +L L L NRIS + R N + ++P
Sbjct: 135 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH 194
Query: 232 IFKDIQELKTF 242
F+D+ L T
Sbjct: 195 AFRDLGRLMTL 205
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN-KLDRLEVAS 352
GN + SF + L +L L N LA++ AFT L L +LD+S N +L ++ A+
Sbjct: 40 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPAT 99
Query: 353 FDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFL 412
F + L L + +Q ++ GLF+ LQ+L
Sbjct: 100 FHGL-GRLHTLHLDRCGLQ-------------------------ELGPGLFRGLAALQYL 133
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
L N LQ + + ++ LTHL L N+ E+++
Sbjct: 134 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 172
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 2/202 (0%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVE 227
Q ++L N+I +P++ F +L +L L N ++ + N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 228 I-NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXX 286
+ +P F+ + L T CGL+ + P ++ LA L YL L N
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGN 153
Query: 287 XXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
GN P + E +F L L L +N +A+V AF +L L+ L + N L
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
Query: 347 RLEVASFDPIENSLRDLKISGN 368
L P+ SL+ L+++ N
Sbjct: 214 MLPAEVLVPLR-SLQYLRLNDN 234
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 61/131 (46%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F+ HL LH+ + +G F G+ +L+YL L NN+ +L D F+ + NL L+L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
N+I S+P F L L L L N ++++ P N++ + E+
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Query: 233 FKDIQELKTFK 243
++ L+ +
Sbjct: 220 LVPLRSLQYLR 230
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 27/159 (16%)
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN-KLDRLEVAS 352
GN + SF S L +L L N LA + AFT LT L +LD+S N +L ++ +
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 353 FDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFL 412
F + + L L + +Q ++ GLF+ LQ+L
Sbjct: 100 FRGLGH-LHTLHLDRCGLQ-------------------------ELGPGLFRGLAALQYL 133
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
L NNLQ + + ++ LTHL L N+ E ++
Sbjct: 134 YLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F+ +L L + + IP++ H F G+ SL L L N++ + + F+ + L LYL
Sbjct: 148 FRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYL 207
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHN 199
N + +P+ V + L L+ L L N
Sbjct: 208 FANNLSMLPAEVLVPLRSLQYLRLNDN 234
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 56/95 (58%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F HL +L+++ +F+ +I F + L L+L++N+I +L D +F G+ NL+EL L
Sbjct: 319 FWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELAL 378
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
D N+++S+P +F L+ L+ + L N PR
Sbjct: 379 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 50/199 (25%)
Query: 150 HNNITSLLDYNFKGM--MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
H N ++ FKG+ ++ L +KI ++ SVF H +DL L+LA N I+K
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK---- 313
Query: 208 XXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLD 267
I+ F + L L +I+ M+ L L LD
Sbjct: 314 --------------------IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353
Query: 268 LGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
L YN H + ++SF L+ L L N+L V
Sbjct: 354 LSYN------------------------HIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 328 AFTNLTNLIELDISYNKLD 346
F LT+L ++ + N D
Sbjct: 390 IFDRLTSLQKIWLHTNPWD 408
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 137 FWGVPSLRYLNLTHNNI-TSLLDYNF-KGMMNLQELYLDFNKIESI-PSSVFMHLSDLRV 193
F G+ +L L LT N+ ++L NF K + +L+ L L N I+ I P+S F+++ V
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 194 LSLAHNRISKLA 205
L L N++ +
Sbjct: 159 LDLTFNKVKSIC 170
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N I + +F L L L +N L + + F NL L LD+SYN + L SF
Sbjct: 309 NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL 368
Query: 355 PIENSLRDLKISGNNIQ 371
+ N L++L + N ++
Sbjct: 369 GLPN-LKELALDTNQLK 384
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 81/218 (37%), Gaps = 42/218 (19%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMAN-----PIPIGQMDLGTEVLKIVPSEENPNHLTIG 110
CP CEC+ DR ++C R P +DLG +K + +E
Sbjct: 3 CPPRCECSAQDRA---VLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDE-------- 51
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
F F HLEEL + + + A+ P F + NL+ L
Sbjct: 52 --FASFPHLEELELNENIVSAVE-------PG-----------------AFNNLFNLRTL 85
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINP 230
L N+++ IP VF LS+L L ++ N+I L ND+V I+
Sbjct: 86 GLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH 145
Query: 231 EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL 268
F + L+ C L +I S L LI L L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRL 183
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 100/263 (38%), Gaps = 28/263 (10%)
Query: 189 SDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCG 248
++ R+L L NRI L N + + P F ++ L+T RS
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 249 LENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQ 308
L+ I +++ L++L LD+ N+ N I ++FS
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGL 151
Query: 309 FKLQVLCLKRNRLAKVTTTAFTNLTNLIEL-----------DISYNKLDRLEV--ASFDP 355
L+ L L++ L + T A ++L LI L D S+ +L RL+V S P
Sbjct: 152 NSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP 211
Query: 356 IENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLS 415
+++ + G N+ I N T +P + +L+FLNLS
Sbjct: 212 YLDTMTPNCLYGLNL---------------TSLSITHCNLTAVPYLAVRHLVYLRFLNLS 256
Query: 416 GNNLQDIHNLLYQSNIKLTHLDL 438
N + I + ++L + L
Sbjct: 257 YNPISTIEGSMLHELLRLQEIQL 279
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 48/86 (55%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L L IT+ + A+ + + LR+LNL++N I+++ ++ LQE+ L ++
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLA 285
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKL 204
+ F L+ LRVL+++ N+++ L
Sbjct: 286 VVEPYAFRGLNYLRVLNVSGNQLTTL 311
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
NP G + + L+E+ + + + + F G+ LR LN++ N +T+L + F
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317
Query: 163 GMMNLQELYLDFNKI 177
+ NL+ L LD N +
Sbjct: 318 SVGNLETLILDSNPL 332
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 6/142 (4%)
Query: 106 HLTIGPI----FQQFQHLEELHITN-SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
HL I I F++ L+ L I++ ++ + + +G+ +L L++TH N+T++
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLA 243
Query: 161 FKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXX 220
+ ++ L+ L L +N I +I S+ L L+ + L +++ + P
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 221 XYNDIVEINPEIFKDIQELKTF 242
N + + +F + L+T
Sbjct: 304 SGNQLTTLEESVFHSVGNLETL 325
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 90/214 (42%), Gaps = 48/214 (22%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
+ L+L N ++SL F + L+ LYL+ NK++++P+ +F L +L L + N++
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 204 LAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADL 263
L ++ +V + E+ D +LK+ + P ++ L L
Sbjct: 100 LP-------------IGVFDQLVNL-AELRLDRNQLKS----------LPPRVFDSLTKL 135
Query: 264 IYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAK 323
YL LGYN+ + + F L+ L L N+L +
Sbjct: 136 TYLSLGYNE------------------------LQSLPKGVFDKLTSLKELRLYNNQLKR 171
Query: 324 VTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
V AF LT L L + N+L R+ +FD +E
Sbjct: 172 VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 12/191 (6%)
Query: 82 PIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVP 141
P ++DL + L +PS+ F + L L++ ++ + + F +
Sbjct: 36 PADTKKLDLQSNKLSSLPSK----------AFHRLTKLRLLYLNDNKLQTLPAGIFKELK 85
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+L L +T N + +L F ++NL EL LD N+++S+P VF L+ L LSL +N +
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 202 SKLAPRXXXXXXXXXXXXXXYNDIVEINPE-IFKDIQELKTFKCRSCGLENINPMMYSIL 260
L P+ YN+ ++ PE F + ELKT K + L+ + + L
Sbjct: 146 QSL-PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Query: 261 ADLIYLDLGYN 271
L L L N
Sbjct: 205 EKLKMLQLQEN 215
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 66/146 (45%), Gaps = 3/146 (2%)
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFM 186
S +P+ FH LR L L N + +L FK + NL+ L++ NK++++P VF
Sbjct: 50 SSLPSKAFHRL---TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 187 HLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRS 246
L +L L L N++ L PR YN++ + +F + LK + +
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 247 CGLENINPMMYSILADLIYLDLGYNQ 272
L+ + + L +L L L NQ
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQ 192
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 8/160 (5%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N + K+F KL++L L N+L + F L NL L ++ NKL L + FD
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 355 PIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTD---IPKGLFKMNPHLQF 411
+ N L +L++ N ++ + Y + +PKG+F L+
Sbjct: 107 QLVN-LAELRLDRNQLKSLPPRVFDSLTKLTYLS----LGYNELQSLPKGVFDKLTSLKE 161
Query: 412 LNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
L L N L+ + + +L L L N+ K E ++
Sbjct: 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 26/139 (18%)
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLK 364
F L L L RN+L + F +LT L L + YN+L L FD + SL++L+
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL-TSLKELR 163
Query: 365 ISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHN 424
+ N ++ +P+G F L+ L L N L+ +
Sbjct: 164 LYNNQLKR-------------------------VPEGAFDKLTELKTLKLDNNQLKRVPE 198
Query: 425 LLYQSNIKLTHLDLSRNKF 443
+ S KL L L N +
Sbjct: 199 GAFDSLEKLKMLQLQENPW 217
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 78/315 (24%), Positives = 122/315 (38%), Gaps = 38/315 (12%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L+ LNL HN ++ + D F NL EL L N I I S+ F + +L L L+HN
Sbjct: 72 LPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPE--IFKDIQELKTFKCRSCGLENINPMMY 257
+S N I+ + E F L+ S L+ +P +
Sbjct: 132 GLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
Query: 258 SILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFS--SQFKLQVLC 315
+ L L L Q P + EK S +Q L
Sbjct: 192 QTIGKLFALLLNNAQLN-----------------------PHLTEKLCWELSNTSIQNLS 228
Query: 316 LKRNRLAKVTTTAFTNL--TNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXX 373
L N+L + + F+ L TNL +LD+SYN L + SF + SLR L + NNIQ
Sbjct: 229 LANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLP-SLRYLSLEYNNIQRL 287
Query: 374 XXXX--------XXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL 425
++ ++ +I F+ +L++LN+ NN+ +
Sbjct: 288 SPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN 347
Query: 426 LYQSNIKLTHLDLSR 440
+ + L +L LS+
Sbjct: 348 TFTGLVSLKYLSLSK 362
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 84/375 (22%), Positives = 151/375 (40%), Gaps = 41/375 (10%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECA 63
T +F + L LDL N I +I FK+ ++ L ++ + L S+ +
Sbjct: 92 TFVFCTNLTELDLMSNSIHKIKSNPFKNQKN---LIKLDLSHNGLSSTKLGTGVQLENLQ 148
Query: 64 LDDRGRYEIVCRRGD----MANPIPIGQMDLGTEVLKIVPSEENPNHL-TIGPIFQQFQH 118
+ +I+ R + + N + ++DL + LK E +P TIG +F +
Sbjct: 149 ELLLAKNKILALRSEELEFLGNS-SLRKLDLSSNPLK----EFSPGCFQTIGKLFALLLN 203
Query: 119 LEEL--HITNSFIPAIGFHPFWGVP--SLRYLNLTHNNITSLLDYNFKGM--MNLQELYL 172
+L H+T W + S++ L+L +N + + + F G+ NL +L L
Sbjct: 204 NAQLNPHLTEKLC--------WELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDL 255
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR-----XXXXXXXXXXXXXXYNDIVE 227
+N + + + F +L LR LSL +N I +L+PR + +
Sbjct: 256 SYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLA 315
Query: 228 INPEI----FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN----QXXXXXXX 279
+P I F+ ++ L+ + + ++ L L YL L Q
Sbjct: 316 SHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETF 375
Query: 280 XXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRL-AKVTTTAFTNLTNLIEL 338
NH I +FS +L++L L N + K++ + L N+ E+
Sbjct: 376 VSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEI 435
Query: 339 DISYNKLDRLEVASF 353
+SYNK +L +SF
Sbjct: 436 YLSYNKYLQLSTSSF 450
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 93/385 (24%), Positives = 150/385 (38%), Gaps = 48/385 (12%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
E + S L+ LDLS N + E +P F+ I +F LL+++ + P++ E
Sbjct: 164 ELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGK--------LFALLLNNAQ--LNPHLTE 213
Query: 62 CALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEE 121
+C +++N I + L L + SE + L ++ +L +
Sbjct: 214 ----------KLC--WELSN-TSIQNLSLANNQL-LATSESTFSGL-------KWTNLTQ 252
Query: 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD--FNKIE- 178
L ++ + + +G F +PSLRYL+L +NNI L +F G+ NL+ L L F K
Sbjct: 253 LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSV 312
Query: 179 ------SIPSSVFMHLSDLRVLSLAHNRI--SKLAPRXXXXXXXXXXXXXXYNDIVEINP 230
+I F L L L++ N I +K + + +
Sbjct: 313 SLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTN 372
Query: 231 EIFKDIQE--LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXX 288
E F + L T + I +S L L LDLG N+
Sbjct: 373 ETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNI 432
Query: 289 XXXXXG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKV--TTTAFTNLTNLIELDISYNKL 345
N + + SF+ LQ L L+R L V + + F L NL LD+S N +
Sbjct: 433 FEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNI 492
Query: 346 DRLEVASFDPIENSLRDLKISGNNI 370
+ + +EN L L NN+
Sbjct: 493 ANINEDLLEGLEN-LEILDFQHNNL 516
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 70/321 (21%), Positives = 115/321 (35%), Gaps = 37/321 (11%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
LNLTHN + L NF L L FN I + + L L+VL+L HN +S+++
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQIS 89
Query: 206 PRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
+ N I +I FK+ + +LI
Sbjct: 90 DQTFVFCTNLTELDLMSNSIHKIKSNPFKNQK------------------------NLIK 125
Query: 266 LDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVIL--EKSFSSQFKLQVLCLKRNRLAK 323
LDL +N N + E F L+ L L N L +
Sbjct: 126 LDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKE 185
Query: 324 VTTTAFTNLTNLIELDISYNKLDR--LEVASFDPIENSLRDLKISGNNIQXXXXXXXXXX 381
+ F + L L ++ +L+ E ++ S+++L ++ N Q
Sbjct: 186 FSPGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANN--QLLATSESTFS 243
Query: 382 XXXXXXXXIADMNYT---DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
D++Y D+ G F P L++L+L NN+Q + + L +L L
Sbjct: 244 GLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
Query: 439 SRNKFKGFDEKSYIMSEPKNI 459
R F ++S ++ NI
Sbjct: 304 KR----AFTKQSVSLASHPNI 320
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 37/83 (44%)
Query: 189 SDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCG 248
S++ VL+L HN++ +L P +N I ++ PE+ + + LK +
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 249 LENINPMMYSILADLIYLDLGYN 271
L I+ + +L LDL N
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSN 107
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 20/151 (13%)
Query: 56 CPYMCECALD-----DRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIG 110
CP C C+ +GR + P +DL T LK +P+
Sbjct: 1 CPSRCSCSGTTVECYSQGRTSV-----PTGIPAQTTYLDLETNSLKSLPNG--------- 46
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
+F + L +L++ + + ++ F + SL YLNL+ N + SL + F + L+EL
Sbjct: 47 -VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L+ N+++S+P VF L+ L+ L L N++
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 26/111 (23%)
Query: 338 LDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTD 397
LD+ N L L FD + SL L + GN +Q
Sbjct: 33 LDLETNSLKSLPNGVFDEL-TSLTQLYLGGNKLQ-------------------------S 66
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+P G+F L +LNLS N LQ + N ++ +L L L+ N+ + +
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD 117
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 50/131 (38%), Gaps = 4/131 (3%)
Query: 241 TFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVI 300
T +C S G ++ I A YLDL N GN +
Sbjct: 11 TVECYSQGRTSV---PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL 67
Query: 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSL 360
F+ L L L N+L + F LT L EL ++ N+L L FD + L
Sbjct: 68 PNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQ-L 126
Query: 361 RDLKISGNNIQ 371
+DL++ N ++
Sbjct: 127 KDLRLYQNQLK 137
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 62/126 (49%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L YL LT N + SL + F + NL+EL L N+++S+P VF L++L L+LAHN++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 203 KLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILAD 262
L YN + + +F + +LK + L+++ ++ L
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTS 206
Query: 263 LIYLDL 268
L Y+ L
Sbjct: 207 LQYIWL 212
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F + +L+EL + + + ++ F + +L YLNL HN + SL F + NL EL
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELD 163
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
L +N+++S+P VF L+ L+ L L N++ +
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 61/138 (44%), Gaps = 28/138 (20%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
++ L L N+L ++ A LTNL L ++ N+L L FD + N L++L + N +
Sbjct: 65 VRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN-LKELVLVENQL 121
Query: 371 QXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
Q +P G+F +L +LNL+ N LQ + ++
Sbjct: 122 QS-------------------------LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKL 156
Query: 431 IKLTHLDLSRNKFKGFDE 448
LT LDLS N+ + E
Sbjct: 157 TNLTELDLSYNQLQSLPE 174
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N + + F L L L N+L + F LTNL ELD+SYN+L L FD
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 355 PIENSLRDLKISGNNIQ 371
+ L+DL++ N ++
Sbjct: 179 KL-TQLKDLRLYQNQLK 194
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 56/134 (41%), Gaps = 26/134 (19%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L L L N+L + F LTNL EL + N+L L FD + N L L ++ N +
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-LTYLNLAHNQL 145
Query: 371 QXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
Q +PKG+F +L L+LS N LQ + ++
Sbjct: 146 QS-------------------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 431 IKLTHLDLSRNKFK 444
+L L L +N+ K
Sbjct: 181 TQLKDLRLYQNQLK 194
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
IF++ L +++ +N+ I I F G + + LT N + ++ FKG+ +L+ L
Sbjct: 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLM 111
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L N+I + + F+ LS +R+LSL N+I+ +AP
Sbjct: 112 LRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK--------FKGFDEKSYI 452
G+FK P L+ +N S N + DI ++ + + L+ N+ FKG + +
Sbjct: 51 GIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110
Query: 453 MSEPKNIHKAAKNSFALQSSM 473
M I +SF SS+
Sbjct: 111 MLRSNRITCVGNDSFIGLSSV 131
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 139 GVPS-LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P+ L+L + +L D F+G+ L L LD+N+++++ + VF L++L L LA
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 198 HNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
+N+++ L N + + +F + +LK + + L++I +
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 258 SILADLIYLDLGYNQ 272
L +L L L NQ
Sbjct: 152 DKLTNLQTLSLSTNQ 166
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F L L + N+ + ++ F + L L L N + SL F + L+EL
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L+ N+++SIP+ F L++L+ LSL+ N++
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%)
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
E+L + ++ + + F G+ L +LNL +N + +L F + L L L N++ S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQEL 239
+P VF HL+ L L L N++ L N + I F + L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272
+T + L+++ + L L + L NQ
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 25/205 (12%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIG------QMDLGTEVLKIVPSEENPNHLTI 109
C + C ++ G+ E+ C+ G + +P G ++DL + L +
Sbjct: 4 CETVTGCTCNE-GKKEVDCQ-GKSLDSVPSGIPADTEKLDLQSTGLATLSD--------- 52
Query: 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169
F+ L L++ + + + F + L L L +N + SL F + L +
Sbjct: 53 -ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEIN 229
LYL N+++S+PS VF L+ L+ L L N++ + N + +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 230 PEIFKDIQELKT-------FKCRSC 247
F + +L+T F C C
Sbjct: 172 HGAFDRLGKLQTITLFGNQFDCSRC 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 50/199 (25%)
Query: 245 RSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKS 304
+S GL ++ + L L +L+L YNQ +
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQ------------------------LQTLSAGV 78
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLK 364
F +L L L N+LA + F +LT L +L + N+L L FD + L++L+
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELR 137
Query: 365 ISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHN 424
++ N +Q IP G F +LQ L+LS N LQ + +
Sbjct: 138 LNTNQLQS-------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 425 LLYQSNIKLTHLDLSRNKF 443
+ KL + L N+F
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVE 227
+E+ ++S+PS + +D L L ++ L+ YN +
Sbjct: 17 KEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXX 287
++ +F D+ EL T + L ++ ++ L L L LG
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG------------------ 115
Query: 288 XXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
GN + F KL+ L L N+L + AF LTNL L +S N+L
Sbjct: 116 ------GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 348 LEVASFDPIENSLRDLKISGN 368
+ +FD + L+ + + GN
Sbjct: 170 VPHGAFDRL-GKLQTITLFGN 189
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXX 375
L+ LA ++ F LT L L++ YN+L L FD L +L G
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLG-------- 89
Query: 376 XXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTH 435
+A+ +P G+F L L L GN L+ + + ++ KL
Sbjct: 90 --------------LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 436 LDLSRNKFK 444
L L+ N+ +
Sbjct: 136 LRLNTNQLQ 144
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 65/135 (48%), Gaps = 1/135 (0%)
Query: 139 GVPS-LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P+ L+L + +L D F+G+ L L LD+N+++++ + VF L++L L LA
Sbjct: 32 GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91
Query: 198 HNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
+N+++ L N + + +F + +LK + + L++I +
Sbjct: 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF 151
Query: 258 SILADLIYLDLGYNQ 272
L +L L L NQ
Sbjct: 152 DKLTNLQTLSLSTNQ 166
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F L L + N+ + ++ F + L L L N + SL F + L+EL
Sbjct: 78 VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELR 137
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L+ N+++SIP+ F L++L+ LSL+ N++
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 64/153 (41%)
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
E+L + ++ + + F G+ L +LNL +N + +L F + L L L N++ S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQEL 239
+P VF HL+ L L L N++ L N + I F + L
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272
+T + L+++ + L L + L NQ
Sbjct: 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 81/205 (39%), Gaps = 25/205 (12%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIG------QMDLGTEVLKIVPSEENPNHLTI 109
C + C ++ G+ E+ C+ G + +P G ++DL + L +
Sbjct: 4 CETVTGCTCNE-GKKEVDCQ-GKSLDSVPSGIPADTEKLDLQSTGLATLSD--------- 52
Query: 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169
F+ L L++ + + + F + L L L +N + SL F + L +
Sbjct: 53 -ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDK 111
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEIN 229
LYL N+++S+PS VF L+ L+ L L N++ + N + +
Sbjct: 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171
Query: 230 PEIFKDIQELKT-------FKCRSC 247
F + +L+T F C C
Sbjct: 172 HGAFDRLGKLQTITLFGNQFDCSRC 196
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 76/199 (38%), Gaps = 50/199 (25%)
Query: 245 RSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKS 304
+S GL ++ + L L +L+L YNQ +
Sbjct: 43 QSTGLATLSDATFRGLTKLTWLNLDYNQ------------------------LQTLSAGV 78
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLK 364
F +L L L N+LA + F +LT L +L + N+L L FD + L++L+
Sbjct: 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELR 137
Query: 365 ISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHN 424
++ N +Q IP G F +LQ L+LS N LQ + +
Sbjct: 138 LNTNQLQS-------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 425 LLYQSNIKLTHLDLSRNKF 443
+ KL + L N+F
Sbjct: 173 GAFDRLGKLQTITLFGNQF 191
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 77/201 (38%), Gaps = 28/201 (13%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVE 227
+E+ ++S+PS + +D L L ++ L+ YN +
Sbjct: 17 KEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXX 287
++ +F D+ EL T + L ++ ++ L L L LG
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG------------------ 115
Query: 288 XXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
GN + F KL+ L L N+L + AF LTNL L +S N+L
Sbjct: 116 ------GNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 348 LEVASFDPIENSLRDLKISGN 368
+ +FD + L+ + + GN
Sbjct: 170 VPHGAFDRL-GKLQTITLFGN 189
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 26/129 (20%)
Query: 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXX 375
L+ LA ++ F LT L L++ YN+L L FD L +L G
Sbjct: 42 LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD----DLTELGTLG-------- 89
Query: 376 XXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTH 435
+A+ +P G+F L L L GN L+ + + ++ KL
Sbjct: 90 --------------LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 436 LDLSRNKFK 444
L L+ N+ +
Sbjct: 136 LRLNTNQLQ 144
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 52/93 (55%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F + +L+EL + + + ++ F + +L YL L HN + SL F + NL L
Sbjct: 104 VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLD 163
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
LD N+++S+P VF L+ L+ LSL N++ +
Sbjct: 164 LDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSV 196
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 2/126 (1%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+L YL LT N + SL + F + NL+EL L N+++S+P VF L++L L L HN++
Sbjct: 86 NLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQL 145
Query: 202 SKLAPRXXXXXXXXXXXXXXYNDIVEINPE-IFKDIQELKTFKCRSCGLENINPMMYSIL 260
L P+ N+ ++ PE +F + +LK L+++ ++ L
Sbjct: 146 QSL-PKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRL 204
Query: 261 ADLIYL 266
L ++
Sbjct: 205 TSLTHI 210
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
++ +L L +T + + ++ F + +L+ L L N + SL D F + NL LYL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
N+++S+P VF L++L L L +N++ L
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 26/150 (17%)
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
GN + F L+ L L N+L + F LTNL L + +N+L L F
Sbjct: 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVF 153
Query: 354 DPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLN 413
D + N R L + N +Q +P+G+F L+ L+
Sbjct: 154 DKLTNLTR-LDLDNNQLQS-------------------------LPEGVFDKLTQLKQLS 187
Query: 414 LSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
L+ N L+ + + ++ LTH+ L N +
Sbjct: 188 LNDNQLKSVPDGVFDRLTSLTHIWLLNNPW 217
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 28/141 (19%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
++ L L N+L ++ A LTNL L ++ N+L L FD + N L++L + N +
Sbjct: 65 VRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN-LKELVLVENQL 121
Query: 371 QXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
Q +P G+F +L +L L N LQ + ++
Sbjct: 122 QS-------------------------LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKL 156
Query: 431 IKLTHLDLSRNKFKGFDEKSY 451
LT LDL N+ + E +
Sbjct: 157 TNLTRLDLDNNQLQSLPEGVF 177
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 26/134 (19%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L L L N+L + F LTNL EL + N+L L FD + N L L + N +
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN-LTYLYLYHNQL 145
Query: 371 QXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
Q +PKG+F +L L+L N LQ + ++
Sbjct: 146 QS-------------------------LPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKL 180
Query: 431 IKLTHLDLSRNKFK 444
+L L L+ N+ K
Sbjct: 181 TQLKQLSLNDNQLK 194
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 17/242 (7%)
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL 188
+PA F V LNL I + Y F +Q+LY+ FN I +P VF ++
Sbjct: 60 LPAALLDSFRQV---ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116
Query: 189 SDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCG 248
L VL L N +S L N++ I + F+ L+ + S
Sbjct: 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 176
Query: 249 LENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQ 308
L +++ S++ L + ++ YN PV +E
Sbjct: 177 LTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE------ 227
Query: 309 FKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
L +L L+ N L T N L+E+D+SYN+L+++ F ++ L L IS N
Sbjct: 228 --LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNN 282
Query: 369 NI 370
+
Sbjct: 283 RL 284
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447
+ +P+G+F P L L++S NNL+ I + +Q+ L +L LS N+ D
Sbjct: 130 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 181
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 36/153 (23%)
Query: 79 MANPIPIGQMDLGTEVLKIVPSEEN---------PNHLTIGPIFQQFQHLEELHITNSFI 129
+A PI + ++D + +V N N+LT + L E+ ++ + +
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260
Query: 130 PAIGFHPF---------------------WG--VPSLRYLNLTHNNITSLLDYNFKGMMN 166
I +HPF +G +P+L+ L+L+HN++ ++ N
Sbjct: 261 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 319
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
L+ LYLD N I ++ S L+ L+L+HN
Sbjct: 320 LENLYLDHNSIVTLKLSTH---HTLKNLTLSHN 349
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 73/155 (47%), Gaps = 19/155 (12%)
Query: 54 VMCPYMCECALDDRGRYEIVCRRGDMAN-----PIPIGQMDLGTEVLKIVPSEENPNHLT 108
V CP C CA + + C + + N P +DL L + +E P LT
Sbjct: 10 VSCPANCLCASNI-----LSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLT 64
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168
+L L ++++ + I F VP+LRYL+L+ N++ +L ++ F + L+
Sbjct: 65 ---------NLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE 115
Query: 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
L L N I + + F ++ L+ L L+ N+IS+
Sbjct: 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR 150
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 74/193 (38%), Gaps = 46/193 (23%)
Query: 146 LNLTHNNITSL-LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
L+L+HNN++ L ++ + NL L L N + I S F+ + +LR L L+ N + L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 205 APRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLI 264
+ +F D+Q L+ + + ++ + +A L
Sbjct: 104 ------------------------DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139
Query: 265 YLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV 324
L L NQ + FPV L K + KL +L L N+L K+
Sbjct: 140 KLYLSQNQI---------------------SRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178
Query: 325 TTTAFTNLTNLIE 337
T L ++
Sbjct: 179 PLTDLQKLPAWVK 191
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 52 ASVMCPYMCECALDDRGRYEIVCRRGDMANPIP------IGQMDLGTEVLKIVPSEENPN 105
S+ CP C C+ IV RG IP I ++ L +K++P
Sbjct: 1 GSLHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGA--- 51
Query: 106 HLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMM 165
F ++ L + ++N+ I + F G+ SL L L N IT L F+G+
Sbjct: 52 -------FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+LQ L L+ NKI + F L +L +LSL N++ +A
Sbjct: 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIV 226
+ E+ L+ N I+ IP F LR + L++N+IS+LAP N I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 227 EINPEIFK 234
E+ +F+
Sbjct: 94 ELPKSLFE 101
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 22/160 (13%)
Query: 52 ASVMCPYMCECALDDRGRYEIVCRRGDMANPIP------IGQMDLGTEVLKIVPSEENPN 105
S+ CP C C+ IV RG IP I ++ L +K++P
Sbjct: 1 GSLHCPAACTCS------NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGA--- 51
Query: 106 HLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMM 165
F ++ L + ++N+ I + F G+ SL L L N IT L F+G+
Sbjct: 52 -------FSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF 104
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+LQ L L+ NKI + F L +L +LSL N++ +A
Sbjct: 105 SLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIA 144
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIV 226
+ E+ L+ N I+ IP F LR + L++N+IS+LAP N I
Sbjct: 34 ITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Query: 227 EINPEIFK 234
E+ +F+
Sbjct: 94 ELPKSLFE 101
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
S+R+L+L+H + SL F+ + +L+ L L +NKI I F L +L+VL+L++N +
Sbjct: 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326
Query: 202 SKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENIN 253
+L N I I + FK +++L+T R L I+
Sbjct: 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 5/70 (7%)
Query: 141 PSLRYLNLTHNNI-----TSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195
PSL L L N + T L F+G+ +LQ LYL+ N + S+P VF HL+ LR LS
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 196 LAHNRISKLA 205
L NR++ L+
Sbjct: 511 LNSNRLTVLS 520
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 24/212 (11%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASV-----MCPY--MC 60
++ LKS+D S N I + + +Q T+ F ++ L+S SV M P+ M
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF-FSLAANSLYSRVSVDWGKCMNPFRNMV 205
Query: 61 ECALDDRGRYEIVCRRGDMANPIPIGQ----------MDLGTEVLKIVPSEENPNHLTIG 110
LD G V G+ +N I Q M G I ++P+ T
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI----KDPDQNTFA 261
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
+ + + L +++ F+ ++ F + L+ LNL +N I + D F G+ NLQ L
Sbjct: 262 GLARS--SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L +N + + SS F L + + L N I+
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 2/110 (1%)
Query: 161 FKGMMNLQELYLDFNK--IESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXX 218
F G+ +LD + + S+ S VF L DL+VL+LA+N+I+K+A
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL 319
Query: 219 XXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL 268
YN + E+ F + ++ + + I + L L LDL
Sbjct: 320 NLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F +L+ L+++ + + + F+G+P + Y++L N+I + D FK + LQ L L
Sbjct: 310 FYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDL 369
Query: 173 DFNKIESI 180
N + +I
Sbjct: 370 RDNALTTI 377
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 57/146 (39%), Gaps = 19/146 (13%)
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXX 284
+ +N +F+ +++LK + I + L +L L+L YN
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Query: 285 XXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLA----------------KVTTTA 328
NH +I +++F KLQ L L+ N L K+ T
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397
Query: 329 FTNLT-NLIELDISYNKLDRLEVASF 353
NLT NLI L S N+L+ L++ F
Sbjct: 398 KINLTANLIHL--SENRLENLDILYF 421
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 39/235 (16%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P L+L +N IT + D +FK + NL L L NKI I F L L L L+ N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 201 ISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQ-----ELKTFKCRSCGLENINPM 255
+ +L + N+I ++ +F + EL T +S G+EN
Sbjct: 112 LKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---G 165
Query: 256 MYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLC 315
+ + L Y+ + P L S + L
Sbjct: 166 AFQGMKKLSYIRIADTNITT---------------------IPQGLPPSLTE------LH 198
Query: 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L N++ KV + L NL +L +S+N + ++ S + LR+L ++ N +
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKL 252
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
FQ + L + I ++ I I P PSL L+L N IT + + KG+ NL +L L
Sbjct: 167 FQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
FN I ++ + + LR L L +N++ K+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L ELH+ + I + G+ +L L L+ N+I+++ + + +L+EL+L+ NK+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLA 205
+P + H ++V+ L +N IS +
Sbjct: 254 KVPGGLADH-KYIQVVYLHNNNISAIG 279
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 58/230 (25%)
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXX 282
N I EI FK+++ L T + + I+P ++ L L L L NQ
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--------- 112
Query: 283 XXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY 342
P + K+ LQ L + N + KV + F L +I +++
Sbjct: 113 ------------KELPEKMPKT------LQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 343 NKLDR--LEVASFDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPK 400
N L +E +F ++ K+S IAD N T IP+
Sbjct: 155 NPLKSSGIENGAFQGMK------KLS--------------------YIRIADTNITTIPQ 188
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
GL P L L+L GN + + + L L LS N D S
Sbjct: 189 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 91/235 (38%), Gaps = 39/235 (16%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P L+L +N IT + D +FK + NL L L NKI I F L L L L+ N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 201 ISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQ-----ELKTFKCRSCGLENINPM 255
+ +L + N+I ++ +F + EL T +S G+EN
Sbjct: 112 LKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIEN---G 165
Query: 256 MYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLC 315
+ + L Y+ + P L S + L
Sbjct: 166 AFQGMKKLSYIRIADTNITT---------------------IPQGLPPSLTE------LH 198
Query: 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L N++ KV + L NL +L +S+N + ++ S + LR+L ++ N +
Sbjct: 199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNNKL 252
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 3/92 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
FQ + L + I ++ I I P PSL L+L N IT + + KG+ NL +L L
Sbjct: 167 FQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 223
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
FN I ++ + + LR L L +N++ K+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKV 255
Score = 35.8 bits (81), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L ELH+ + I + G+ +L L L+ N+I+++ + + +L+EL+L+ NK+
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLA 205
+P + H ++V+ L +N IS +
Sbjct: 254 KVPGGLADH-KYIQVVYLHNNNISAIG 279
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 55/230 (23%), Positives = 82/230 (35%), Gaps = 58/230 (25%)
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXX 282
N I EI FK+++ L T + + I+P ++ L L L L NQ
Sbjct: 62 NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--------- 112
Query: 283 XXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY 342
P + K+ LQ L + N + KV + F L +I +++
Sbjct: 113 ------------KELPEKMPKT------LQELRVHENEITKVRKSVFNGLNQMIVVELGT 154
Query: 343 NKLDR--LEVASFDPIENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPK 400
N L +E +F ++ K+S IAD N T IP+
Sbjct: 155 NPLKSSGIENGAFQGMK------KLS--------------------YIRIADTNITTIPQ 188
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
GL P L L+L GN + + + L L LS N D S
Sbjct: 189 GL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS 235
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 113/296 (38%), Gaps = 41/296 (13%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE--- 169
FQ + LE L++ ++ IP I + F G+ +L+YL+L+ N+ TSL + ++L
Sbjct: 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPL 383
Query: 170 --LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK-LAPRXXXXXXXXXXXXXXYNDIV 226
L L NKI I S F L L VL L N I + L + YN +
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443
Query: 227 EINPEIFKDIQELKTFKCRSCGLENIN--PMMYSILADLIYLDL--------------GY 270
++ F + L+ R L+N++ P + L +L LDL G
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503
Query: 271 NQXXXXXXXXXXXXXXXXXXXXXG------------------NHFPVILEKSFSSQFKLQ 312
+ G N F I + F F+L+
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
++ L N L + + F N +L L++ N + +E F P +L +L + N
Sbjct: 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 27/219 (12%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L+ LNL HN ++ L D F NL EL+L N I+ I ++ F+ +L L L+HN
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPE---IFKDIQELKTFKCRSCGLENINPMM 256
+S N I + E IF + LK + S ++ +P
Sbjct: 132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGC 190
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
+ + L L L Q + LE + +S ++ L L
Sbjct: 191 FHAIGRLFGLFLNNVQLGPSLTEK------------------LCLELANTS---IRNLSL 229
Query: 317 KRNRLAKVTTTAFTNL--TNLIELDISYNKLDRLEVASF 353
++L+ + T F L TNL LD+SYN L+ + SF
Sbjct: 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 268
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
LNLTHN + L NF L L + FN I + + L L+VL+L HN +S+L+
Sbjct: 30 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 89
Query: 206 PRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGL 249
+ N I +I F + L T GL
Sbjct: 90 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 133
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 139 GVPSLRYLNLTHNNITSLLD--------YNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190
G+ L L+L HNN+ L Y KG+ +L L L+ N + IP VF L +
Sbjct: 502 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 561
Query: 191 LRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI----FKDIQELK-TFKCR 245
L+++ L N ++ L N I + ++ F+++ EL F
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
Query: 246 SCGLENI 252
C E+I
Sbjct: 622 DCTCESI 628
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 99/478 (20%), Positives = 175/478 (36%), Gaps = 65/478 (13%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
E + S LK L+LS N I E +P F I LF + L S +C +
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV--QLGPSLTEKLCLELAN 221
Query: 62 CALDDRGRYEIVCRRGDMANPIPIG-------QMDLGTEVLKIVPSEENPNHLTIGPIFQ 114
++ R + +N +G +DL L +V ++ F
Sbjct: 222 TSI--RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----------FA 269
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN---------NITSLLDYNFKGMM 165
LE + + I + H G+ ++RYLNL + ++ + D++F+ +
Sbjct: 270 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDI 225
L+ L ++ N I I S++F L +L+ LSL+++ + +
Sbjct: 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS----------------------FTSL 367
Query: 226 VEINPEIFKDIQE--LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXX 283
+ E F + L + I +S L L LDLG N+
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 427
Query: 284 XXXXXXXXXXG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA--FTNLTNLIELDI 340
N + + SF+ LQ L L+R L V ++ F L NL LD+
Sbjct: 428 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXX-------XXXXXXXXXXXIADM 393
S N + + + +E L L + NN+ +
Sbjct: 488 SNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 546
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
+ +IP +FK L+ ++L NNL + ++ + + L L+L +N ++K +
Sbjct: 547 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
++ + L LD+G+N N + +K+F+ L L L
Sbjct: 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
N + K+ F NLI LD+S+N L ++ +
Sbjct: 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 140
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+ VL L N+L ++ FT + L LD+ +N + +LE
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+L ELH+ ++ I I +PF +L L+L+HN ++S + NLQEL L NKI
Sbjct: 98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157
Query: 178 ESIPSS---VFMHLSDLRVLSLAHNRISKLAP 206
+++ S +F + S L+ L L+ N+I + +P
Sbjct: 158 QALKSEELDIFAN-SSLKKLELSSNQIKEFSP 188
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 113/296 (38%), Gaps = 41/296 (13%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE--- 169
FQ + LE L++ ++ IP I + F G+ +L+YL+L+ N+ TSL + ++L
Sbjct: 335 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPL 393
Query: 170 --LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK-LAPRXXXXXXXXXXXXXXYNDIV 226
L L NKI I S F L L VL L N I + L + YN +
Sbjct: 394 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 453
Query: 227 EINPEIFKDIQELKTFKCRSCGLENIN--PMMYSILADLIYLDL--------------GY 270
++ F + L+ R L+N++ P + L +L LDL G
Sbjct: 454 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 513
Query: 271 NQXXXXXXXXXXXXXXXXXXXXXG------------------NHFPVILEKSFSSQFKLQ 312
+ G N F I + F F+L+
Sbjct: 514 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 573
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
++ L N L + + F N +L L++ N + +E F P +L +L + N
Sbjct: 574 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 629
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 27/219 (12%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L+ LNL HN ++ L D F NL EL+L N I+ I ++ F+ +L L L+HN
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPE---IFKDIQELKTFKCRSCGLENINPMM 256
+S N I + E IF + LK + S ++ +P
Sbjct: 142 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGC 200
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
+ + L L L Q + LE + +S ++ L L
Sbjct: 201 FHAIGRLFGLFLNNVQLGPSLTEK------------------LCLELANTS---IRNLSL 239
Query: 317 KRNRLAKVTTTAFTNL--TNLIELDISYNKLDRLEVASF 353
++L+ + T F L TNL LD+SYN L+ + SF
Sbjct: 240 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 278
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
LNLTHN + L NF L L + FN I + + L L+VL+L HN +S+L+
Sbjct: 40 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 99
Query: 206 PRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGL 249
+ N I +I F + L T GL
Sbjct: 100 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 143
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 139 GVPSLRYLNLTHNNITSLLD--------YNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190
G+ L L+L HNN+ L Y KG+ +L L L+ N + IP VF L +
Sbjct: 512 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 571
Query: 191 LRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI----FKDIQELK-TFKCR 245
L+++ L N ++ L N I + ++ F+++ EL F
Sbjct: 572 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
Query: 246 SCGLENI 252
C E+I
Sbjct: 632 DCTCESI 638
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 99/478 (20%), Positives = 175/478 (36%), Gaps = 65/478 (13%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
E + S LK L+LS N I E +P F I LF + L S +C +
Sbjct: 174 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV--QLGPSLTEKLCLELAN 231
Query: 62 CALDDRGRYEIVCRRGDMANPIPIG-------QMDLGTEVLKIVPSEENPNHLTIGPIFQ 114
++ R + +N +G +DL L +V ++ F
Sbjct: 232 TSI--RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----------FA 279
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN---------NITSLLDYNFKGMM 165
LE + + I + H G+ ++RYLNL + ++ + D++F+ +
Sbjct: 280 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 339
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDI 225
L+ L ++ N I I S++F L +L+ LSL+++ + +
Sbjct: 340 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS----------------------FTSL 377
Query: 226 VEINPEIFKDIQE--LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXX 283
+ E F + L + I +S L L LDLG N+
Sbjct: 378 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 437
Query: 284 XXXXXXXXXXG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA--FTNLTNLIELDI 340
N + + SF+ LQ L L+R L V ++ F L NL LD+
Sbjct: 438 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 497
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXX-------XXXXXXXXXXXIADM 393
S N + + + +E L L + NN+ +
Sbjct: 498 SNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 556
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
+ +IP +FK L+ ++L NNL + ++ + + L L+L +N ++K +
Sbjct: 557 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 614
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
++ + L LD+G+N N + +K+F+ L L L
Sbjct: 55 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 114
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
N + K+ F NLI LD+S+N L ++ +
Sbjct: 115 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 150
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+ VL L N+L ++ FT + L LD+ +N + +LE
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 75
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 4/92 (4%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+L ELH+ ++ I I +PF +L L+L+HN ++S + NLQEL L NKI
Sbjct: 108 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 167
Query: 178 ESIPSS---VFMHLSDLRVLSLAHNRISKLAP 206
+++ S +F + S L+ L L+ N+I + +P
Sbjct: 168 QALKSEELDIFAN-SSLKKLELSSNQIKEFSP 198
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
++++L
Sbjct: 159 QLTEL 163
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N + E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +N +T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
++++L
Sbjct: 159 QLTEL 163
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N + E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +N +T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQX 372
+L L N L + T L +L++ +L +L+V P+ L L +S N +Q
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---LGTLDLSHNQLQS 91
Query: 373 XXXXXXXXXXXXXXXXXIADMNY---TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+ D+++ T +P G + LQ L L GN L+ + L
Sbjct: 92 LPLLGQTLPALT-----VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 430 NIKLTHLDLSRNKF 443
KL L L+ N+
Sbjct: 147 TPKLEKLSLANNQL 160
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/296 (23%), Positives = 113/296 (38%), Gaps = 41/296 (13%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE--- 169
FQ + LE L++ ++ IP I + F G+ +L+YL+L+ N+ TSL + ++L
Sbjct: 330 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS-NSFTSLRTLTNETFVSLAHSPL 388
Query: 170 --LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK-LAPRXXXXXXXXXXXXXXYNDIV 226
L L NKI I S F L L VL L N I + L + YN +
Sbjct: 389 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 448
Query: 227 EINPEIFKDIQELKTFKCRSCGLENIN--PMMYSILADLIYLDL--------------GY 270
++ F + L+ R L+N++ P + L +L LDL G
Sbjct: 449 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 508
Query: 271 NQXXXXXXXXXXXXXXXXXXXXXG------------------NHFPVILEKSFSSQFKLQ 312
+ G N F I + F F+L+
Sbjct: 509 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 568
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
++ L N L + + F N +L L++ N + +E F P +L +L + N
Sbjct: 569 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 624
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 90/219 (41%), Gaps = 27/219 (12%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L+ LNL HN ++ L D F NL EL+L N I+ I ++ F+ +L L L+HN
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPE---IFKDIQELKTFKCRSCGLENINPMM 256
+S N I + E IF + LK + S ++ +P
Sbjct: 137 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN-SSLKKLELSSNQIKEFSPGC 195
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
+ + L L L Q + LE + +S ++ L L
Sbjct: 196 FHAIGRLFGLFLNNVQLGPSLTEK------------------LCLELANTS---IRNLSL 234
Query: 317 KRNRLAKVTTTAFTNL--TNLIELDISYNKLDRLEVASF 353
++L+ + T F L TNL LD+SYN L+ + SF
Sbjct: 235 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSF 273
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 43/104 (41%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
LNLTHN + L NF L L + FN I + + L L+VL+L HN +S+L+
Sbjct: 35 LNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS 94
Query: 206 PRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGL 249
+ N I +I F + L T GL
Sbjct: 95 DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL 138
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 13/127 (10%)
Query: 139 GVPSLRYLNLTHNNITSLLD--------YNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190
G+ L L+L HNN+ L Y KG+ +L L L+ N + IP VF L +
Sbjct: 507 GLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFE 566
Query: 191 LRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI----FKDIQELK-TFKCR 245
L+++ L N ++ L N I + ++ F+++ EL F
Sbjct: 567 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
Query: 246 SCGLENI 252
C E+I
Sbjct: 627 DCTCESI 633
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 99/478 (20%), Positives = 175/478 (36%), Gaps = 65/478 (13%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
E + S LK L+LS N I E +P F I LF + L S +C +
Sbjct: 169 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV--QLGPSLTEKLCLELAN 226
Query: 62 CALDDRGRYEIVCRRGDMANPIPIG-------QMDLGTEVLKIVPSEENPNHLTIGPIFQ 114
++ R + +N +G +DL L +V ++ F
Sbjct: 227 TSI--RNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS----------FA 274
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN---------NITSLLDYNFKGMM 165
LE + + I + H G+ ++RYLNL + ++ + D++F+ +
Sbjct: 275 WLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 334
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDI 225
L+ L ++ N I I S++F L +L+ LSL+++ + +
Sbjct: 335 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS----------------------FTSL 372
Query: 226 VEINPEIFKDIQE--LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXX 283
+ E F + L + I +S L L LDLG N+
Sbjct: 373 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR 432
Query: 284 XXXXXXXXXXG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA--FTNLTNLIELDI 340
N + + SF+ LQ L L+R L V ++ F L NL LD+
Sbjct: 433 GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 492
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXX-------XXXXXXXXXXXIADM 393
S N + + + +E L L + NN+ +
Sbjct: 493 SNNNIANINDDMLEGLE-KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN 551
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
+ +IP +FK L+ ++L NNL + ++ + + L L+L +N ++K +
Sbjct: 552 GFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 609
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 257 YSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCL 316
++ + L LD+G+N N + +K+F+ L L L
Sbjct: 50 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 109
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
N + K+ F NLI LD+S+N L ++ +
Sbjct: 110 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT 145
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+ VL L N+L ++ FT + L LD+ +N + +LE
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 70
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
++++L
Sbjct: 159 QLTEL 163
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N + E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +N +T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQX 372
+L L N L + T L +L++ +L +L+V P+ L L +S N +Q
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---LGTLDLSHNQLQS 91
Query: 373 XXXXXXXXXXXXXXXXXIADMNY---TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+ D+++ T +P G + LQ L L GN L+ + L
Sbjct: 92 LPLLGQTLPALT-----VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 430 NIKLTHLDLSRNKF 443
KL L L+ N+
Sbjct: 147 TPKLEKLSLANNQL 160
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
++++L
Sbjct: 159 QLTEL 163
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N + E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTL 177
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +N +T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 54/134 (40%), Gaps = 11/134 (8%)
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQX 372
+L L N L + T L +L++ +L +L+V P+ L L +S N +Q
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV---LGTLDLSHNQLQS 91
Query: 373 XXXXXXXXXXXXXXXXXIADMNY---TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+ D+++ T +P G + LQ L L GN L+ + L
Sbjct: 92 LPLLGQTLPALT-----VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 430 NIKLTHLDLSRNKF 443
KL L L+ N+
Sbjct: 147 TPKLEKLSLANNQL 160
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 67/154 (43%), Gaps = 14/154 (9%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGP--IF 113
CP C C+ EI C + + +P G T + E N L P +F
Sbjct: 1 CPSRCSCS-----GTEIRCNSKGLTS-VPTGIPSSATRL------ELESNKLQSLPHGVF 48
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD 173
+ L +L ++ + I ++ F + L L L N + SL + F + L+EL LD
Sbjct: 49 DKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108
Query: 174 FNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
N+++S+P +F L+ L+ + L N PR
Sbjct: 109 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 95/242 (39%), Gaps = 17/242 (7%)
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL 188
+PA F V LNL I + Y F +Q+LY+ FN I +P VF ++
Sbjct: 66 LPAALLDSFRQV---ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122
Query: 189 SDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCG 248
L VL L N +S L N++ I + F+ L+ + S
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 249 LENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQ 308
L +++ S++ L + ++ YN PV +E
Sbjct: 183 LTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE------ 233
Query: 309 FKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
L +L L+ N L T N L+E+D+SYN+L+++ F ++ L L IS N
Sbjct: 234 --LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYISNN 288
Query: 369 NI 370
+
Sbjct: 289 RL 290
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447
+ +P+G+F P L L++S NNL+ I + +Q+ L +L LS N+ D
Sbjct: 136 SSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 36/153 (23%)
Query: 79 MANPIPIGQMDLGTEVLKIVPSEEN---------PNHLTIGPIFQQFQHLEELHITNSFI 129
+A PI + ++D + +V N N+LT + L E+ ++ + +
Sbjct: 207 LAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 266
Query: 130 PAIGFHPF---------------------WG--VPSLRYLNLTHNNITSLLDYNFKGMMN 166
I +HPF +G +P+L+ L+L+HN++ ++ N
Sbjct: 267 EKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDR 325
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
L+ LYLD N I ++ S L + L+L+HN
Sbjct: 326 LENLYLDHNSIVTLKLSTHHTLKN---LTLSHN 355
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 6/94 (6%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ + EL ++ + P G+ S++ L+LT IT + G+ NLQ LYL
Sbjct: 87 LKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYL 142
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
D N+I +I S L++L+ LS+ +N+++ L P
Sbjct: 143 DLNQITNI--SPLAGLTNLQYLSIGNNQVNDLTP 174
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
+++L
Sbjct: 159 NLTEL 163
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RAELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +NN+T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N++ E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
+++L
Sbjct: 159 NLTEL 163
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RAELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +NN+T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N++ E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 200 RISKL 204
+++L
Sbjct: 160 NLTEL 164
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 32 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQVDGTLPV-LGTLDL 85
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 145
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +NN+T L G+ NL L L N + +IP F
Sbjct: 146 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 77 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N++ E+ + ++ L T
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 178
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
+++L
Sbjct: 159 NLTEL 163
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 33 QDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRGDMANPIPIGQMDL 90
+DTT+L LY S + + PY + + LD R E+ + D P+ +G +DL
Sbjct: 31 KDTTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RAELTKLQVDGTLPV-LGTLDL 84
Query: 91 GTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHITNSFIPAIGFHPF 137
L+ +P + P N LT P+ + L+EL++ + + +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P L L+L +NN+T L G+ NL L L N + +IP F
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N++ E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 118 HLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK 176
H EL + ++ + I +G +P L L L N +T + F+G ++QEL L NK
Sbjct: 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89
Query: 177 IESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
I+ I + +F+ L L+ L+L N+IS + P
Sbjct: 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMP 119
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 63/147 (42%), Gaps = 15/147 (10%)
Query: 56 CPYMCEC---ALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPI 112
CP MC C +D GR IP D+ +++ ++ ++ +
Sbjct: 2 CPAMCHCEGTTVDCTGRG---------LKEIP---RDIPLHTTELLLNDNELGRISSDGL 49
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F + HL +L + + + I + F G ++ L L N I + + F G+ L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHN 199
N+I + F HL+ L L+LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
+++L
Sbjct: 159 NLTEL 163
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 20 DIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRG 77
D+ + P++ KD TT+L LY S + + PY + + LD R E+ +
Sbjct: 21 DLTALPPDLPKD---TTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQV 72
Query: 78 DMANPIPIGQMDLGTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHI 124
D P+ +G +DL L+ +P + P N LT P+ + L+EL++
Sbjct: 73 DGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 125 TNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSV 184
+ + + P L L+L +NN+T L G+ NL L L N + +IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 185 F 185
F
Sbjct: 192 F 192
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P N++ E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P+L L+++ N +TSL +G+ LQELYL N+++++P + L LSLA+N
Sbjct: 99 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 200 RISKL 204
+++L
Sbjct: 159 DLTEL 163
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+P L L+L+HN + SL + + L L + FN++ S+P L +L+ L L N
Sbjct: 76 LPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 200 RISKLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTF 242
+ L P ND+ E+ + ++ L T
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTL 177
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 20 DIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPY--MCECALDDRGRYEIVCRRG 77
D+ + P++ KD TT+L LY S + + PY + + LD R E+ +
Sbjct: 21 DLTALPPDLPKD---TTILHLSENLLYTF--SLATLMPYTRLTQLNLD---RCELTKLQV 72
Query: 78 DMANPIPIGQMDLGTEVLKIVP--SEENP---------NHLTIGPI--FQQFQHLEELHI 124
D P+ +G +DL L+ +P + P N LT P+ + L+EL++
Sbjct: 73 DGTLPV-LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131
Query: 125 TNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSV 184
+ + + P L L+L +N++T L G+ NL L L N + +IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191
Query: 185 F 185
F
Sbjct: 192 F 192
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
GN F ++ K S+ L ++ L NR++ ++ +F+N+T L+ L +SYN+L + +F
Sbjct: 40 GNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF 98
Query: 354 DPIENSLRDLKISGNNIQ 371
D ++ SLR L + GN+I
Sbjct: 99 DGLK-SLRLLSLHGNDIS 115
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L ++L++N I++L + +F M L L L +N++ IP F L LR+LSL N IS
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 166 NLQELYLDFNKIESIPS--SVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYN 223
++ ELYLD N+ +P S + HL+ ++ L++NRIS L+ + YN
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLT---LIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88
Query: 224 DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
+ I P F ++ L+ + + ++ L+ L +L +G N
Sbjct: 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ + EL ++ + P G+ S++ L+LT IT + G+ NLQ LYL
Sbjct: 81 LKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYL 136
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
D N+I +I S L++L+ LS+ + ++S L P
Sbjct: 137 DLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP 168
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 1/67 (1%)
Query: 139 GVPS-LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P+ + L L N IT L F ++NL+ELYL N++ ++P VF L+ L VL L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 198 HNRISKL 204
N+++ L
Sbjct: 97 TNQLTVL 103
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 53 SVMCPYMCECA---LDDRGRYEIVCRRGDMANPIPIGQMDL---GTEVLKIVPSEENPNH 106
S CP C C+ +D R + R + IP L ++ K+ P
Sbjct: 10 SAACPSQCSCSGTTVDCRSK-----RHASVPAGIPTNAQILYLHDNQITKLEPG------ 58
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMN 166
+F +L+EL++ ++ + A+ F + L L+L N +T L F +++
Sbjct: 59 -----VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
L+EL++ NK+ +P + L+ L L+L N++ +
Sbjct: 114 LKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSI 150
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 5/133 (3%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN-SLRDLKISGNNI 370
Q+L L N++ K+ F +L NL EL + N+L L V FD + ++ DL G N
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL---GTNQ 99
Query: 371 QXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
+ T++P+G+ ++ HL L L N L+ I + +
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT-HLTHLALDQNQLKSIPHGAFDRL 158
Query: 431 IKLTHLDLSRNKF 443
LTH L N +
Sbjct: 159 SSLTHAYLFGNPW 171
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 67/138 (48%), Gaps = 5/138 (3%)
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS-SVFMHLSDLRVLSL 196
+G SL+YL+L+ N + ++ NF G+ L+ L + ++ + SVF+ L +L L +
Sbjct: 370 FGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 197 AHNRISKLAPRXXXXXXXXXXXXXXYNDIVEIN--PEIFKDIQELKTFKCRSCGLENINP 254
+H +++A + + N P+IF +++ L C LE ++P
Sbjct: 429 SHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 255 MMYSILADLIYLDLGYNQ 272
++ L+ L L++ NQ
Sbjct: 488 TAFNSLSSLQVLNMASNQ 505
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 66/156 (42%), Gaps = 3/156 (1%)
Query: 87 QMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG-FHPFWGVPSLRY 145
Q D GT LK + N +T+ F + LE L +S + + F F + +L Y
Sbjct: 367 QSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKI-ESIPSSVFMHLSDLRVLSLAHNRISKL 204
L+++H + + F G+ +L+ L + N E+ +F L +L L L+ ++ +L
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 205 APRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELK 240
+P N + + IF + L+
Sbjct: 486 SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNFKGMM 165
L +G F L++L + + ++ P + +L+ LN+ HN I S L F +
Sbjct: 91 LALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVL 194
NL+ L L NKI+SI + +DLRVL
Sbjct: 150 NLEHLDLSSNKIQSI------YCTDLRVL 172
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 112 IFQQFQHLEELHITNS-----FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMN 166
IF LE L + + F+P I F + +L +L+L+ + L F + +
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDI----FTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
LQ L + N+++S+P +F L+ L+ + L N PR
Sbjct: 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 13/168 (7%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
+ LK LDLS+N ++ ++ Q + FQ HS+ M + +L +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ--------HSNLKQMSEFSVFLSLRNLI 424
Query: 69 RYEIVCRRGDMA-NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+I +A N I G L EVLK+ + N L IF + ++L L ++
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQC 480
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ + F + SL+ LN+ N + S+ D F + +LQ+++L N
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 260 LADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPV-ILEKSFSSQFKLQVLCLKR 318
L +LIYLD+ + GN F L F+ L L L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
+L +++ TAF +L++L L+++ N+L + FD
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 139 GVPSLRY-LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P+ + L L +N IT L F ++NLQ+LY + NK+ +IP+ VF L+ L L L
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 198 HNRISKLAPR 207
N + + PR
Sbjct: 90 DNHLKSI-PR 98
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
F LQ L N+L + T F LT L +LD++ N L + +FD
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L L L N I + D F G+ +L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 360
Query: 203 KLAPR 207
PR
Sbjct: 361 CSCPR 365
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F F LE+L + + I I + FWG+ L+ L L N + S+ D F + +LQ+++
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIW 353
Query: 172 LDFN 175
L N
Sbjct: 354 LHTN 357
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 150 HNNITSLLDYNFKGM--MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
H N ++ FKG+ ++ L +KI ++ SVF H +DL L+LA N I+K+
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 137 FWGVPSLRYLNLTHNNI-TSLLDYNF-KGMMNLQELYLDFNKIESI-PSSVFMHLSDLRV 193
F G+ +L L LT N+ ++L NF K + +L+ L L N I+ I P+S F+++ V
Sbjct: 99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158
Query: 194 LSLAHNRISKLA 205
L L N++ +
Sbjct: 159 LDLTFNKVKSIC 170
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS-SVFMHLSDLRVLSL 196
+G SL+YL+L+ N + ++ NF G+ L+ L + ++ + SVF+ L +L L +
Sbjct: 370 FGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428
Query: 197 AHNRISKLAPRXXXXXXXXXXXXXXYNDIVEIN--PEIFKDIQELKTFKCRSCGLENINP 254
+H +++A + + N P+IF +++ L C LE ++P
Sbjct: 429 SHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 487
Query: 255 MMYSILADLIYLDLGYN 271
++ L+ L L++ +N
Sbjct: 488 TAFNSLSSLQVLNMSHN 504
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
+ LK LDLS+N ++ ++ Q + FQ HS+ M + +L +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ--------HSNLKQMSEFSVFLSLRNLI 424
Query: 69 RYEIVCRRGDMA-NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+I +A N I G L EVLK+ + N L IF + ++L L ++
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQC 480
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
+ + F + SL+ LN++HNN SL + +K + +LQ L N I + H
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 540
Query: 188 L-SDLRVLSLAHN 199
S L L+L N
Sbjct: 541 FPSSLAFLNLTQN 553
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNFKGMM 165
L +G F L++L + + ++ P + +L+ LN+ HN I S L F +
Sbjct: 91 LALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVL 194
NL+ L L NKI+SI + +DLRVL
Sbjct: 150 NLEHLDLSSNKIQSI------YCTDLRVL 172
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 260 LADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPV-ILEKSFSSQFKLQVLCLKR 318
L +LIYLD+ + GN F L F+ L L L +
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
+L +++ TAF +L++L L++S+N L+ + + NSL+ L S N+I
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHI 530
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIEN---SLRDLKISGNNIQXXXXXXXXXXXX 383
+ F +L NLI LDIS+ +F+ I N SL LK++GN+ Q
Sbjct: 415 SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470
Query: 384 XXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
++ + F LQ LN+S NN + Y+ L LD S N
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTT-TAFTNLTNLIELDISYN--KLDRLEVASFDP 355
+I+ +F +LQ L + + L +VT +AF +L L+ LDISY K+D FD
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDG 442
Query: 356 I---ENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFL 412
I SL LK++GN+ + ++ I G+F LQ L
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 502
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNI 459
N+S NNL + + Y L+ LD S N+ + K + PK++
Sbjct: 503 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET--SKGILQHFPKSL 547
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 82 PIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVP 141
P +DL LKI+ S F F L+ L ++ I I + G+
Sbjct: 31 PSSTKNIDLSFNPLKILKSYS----------FSNFSELQWLDLSRCEIETIEDKAWHGLH 80
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L L LT N I S +F G+ +L+ L K+ S+ S L L+ L++AHN I
Sbjct: 81 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 140
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 108 TIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
T+ +F +L L ++ + I + F + L+ LN++HNN+ L ++ + +L
Sbjct: 464 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523
Query: 168 QELYLDFNKIES 179
L FN+IE+
Sbjct: 524 STLDCSFNRIET 535
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTT-TAFTNLTNLIELDISYN--KLDRLEVASFDP 355
+I+ +F +LQ L + + L +VT +AF +L L+ LDISY K+D FD
Sbjct: 384 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID------FDG 437
Query: 356 I---ENSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFL 412
I SL LK++GN+ + ++ I G+F LQ L
Sbjct: 438 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL 497
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNI 459
N+S NNL + + Y L+ LD S N+ + K + PK++
Sbjct: 498 NMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET--SKGILQHFPKSL 542
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 82 PIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVP 141
P +DL LKI+ S F F L+ L ++ I I + G+
Sbjct: 26 PSSTKNIDLSFNPLKILKSYS----------FSNFSELQWLDLSRCEIETIEDKAWHGLH 75
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L L LT N I S +F G+ +L+ L K+ S+ S L L+ L++AHN I
Sbjct: 76 HLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFI 135
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 108 TIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
T+ +F +L L ++ + I + F + L+ LN++HNN+ L ++ + +L
Sbjct: 459 TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 518
Query: 168 QELYLDFNKIES 179
L FN+IE+
Sbjct: 519 STLDCSFNRIET 530
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 5/137 (3%)
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS-SVFMHLSDLRVLSL 196
+G SL+YL+L+ N + ++ NF G+ L+ L + ++ + SVF+ L +L L +
Sbjct: 394 FGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452
Query: 197 AHNRISKLAPRXXXXXXXXXXXXXXYNDIVEIN--PEIFKDIQELKTFKCRSCGLENINP 254
+H +++A + + N P+IF +++ L C LE ++P
Sbjct: 453 SHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP 511
Query: 255 MMYSILADLIYLDLGYN 271
++ L+ L L++ +N
Sbjct: 512 TAFNSLSSLQVLNMSHN 528
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 83/191 (43%), Gaps = 14/191 (7%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
LK LDLS+N ++ ++ Q + FQ HS+ M + +L +
Sbjct: 399 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQ--------HSNLKQMSEFSVFLSLRNLIYL 450
Query: 71 EIVCRRGDMA-NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFI 129
+I +A N I G L EVLK+ + N L IF + ++L L ++ +
Sbjct: 451 DISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQCQL 506
Query: 130 PAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL- 188
+ F + SL+ LN++HNN SL + +K + +LQ L N I + H
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 566
Query: 189 SDLRVLSLAHN 199
S L L+L N
Sbjct: 567 SSLAFLNLTQN 577
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNFKGMM 165
L +G F L++L + + ++ P + +L+ LN+ HN I S L F +
Sbjct: 115 LALGA-FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 173
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVL 194
NL+ L L NKI+SI + +DLRVL
Sbjct: 174 NLEHLDLSSNKIQSI------YCTDLRVL 196
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 132 VETNLASLENFPIGHLKTLKELNVAHNLI 160
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 2/112 (1%)
Query: 260 LADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPV-ILEKSFSSQFKLQVLCLKR 318
L +LIYLD+ + GN F L F+ L L L +
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
+L +++ TAF +L++L L++S+N L+ + + NSL+ L S N+I
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-NSLQVLDYSLNHI 554
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIEN---SLRDLKISGNNIQXXXXXXXXXXXX 383
+ F +L NLI LDIS+ +F+ I N SL LK++GN+ Q
Sbjct: 439 SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 494
Query: 384 XXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
++ + F LQ LN+S NN + Y+ L LD S N
Sbjct: 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 93/206 (45%), Gaps = 6/206 (2%)
Query: 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS--KLAPRXXXXXXXXXXXXXXYNDIV 226
L L+ NK++S+P VF L+ L LSL+ N +S + +N ++
Sbjct: 32 RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 91
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPM-MYSILADLIYLDLGYNQXXXXXXXXXXXXX 285
++ F +++L+ + L+ ++ ++ L +LIYLD+ +
Sbjct: 92 TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150
Query: 286 XXXXXXXXGNHFPV-ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
GN F L F+ L L L + +L +++ TAF +L++L L++S+N
Sbjct: 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210
Query: 345 LDRLEVASFDPIENSLRDLKISGNNI 370
L+ + + NSL+ L S N+I
Sbjct: 211 FFSLDTFPYKCL-NSLQVLDYSLNHI 235
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 52/193 (26%), Positives = 84/193 (43%), Gaps = 14/193 (7%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
+ LK LDLS+N ++ ++ Q + FQ HS+ M + +L +
Sbjct: 78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ--------HSNLKQMSEFSVFLSLRNLI 129
Query: 69 RYEIVCRRGDMA-NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+I +A N I G L EVLK+ + N L IF + ++L L ++
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSL--EVLKMAGNSFQENFLP--DIFTELRNLTFLDLSQC 185
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
+ + F + SL+ LN++HNN SL + +K + +LQ L N I + H
Sbjct: 186 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245
Query: 188 L-SDLRVLSLAHN 199
S L L+L N
Sbjct: 246 FPSSLAFLNLTQN 258
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIEN---SLRDLKISGNNIQXXXXXXXXXXXX 383
+ F +L NLI LDIS+ +F+ I N SL LK++GN+ Q
Sbjct: 120 SVFLSLRNLIYLDISHTHTR----VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175
Query: 384 XXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
++ + F LQ LN+S NN + Y+ L LD S N
Sbjct: 176 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 37/157 (23%)
Query: 48 LHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHL 107
L + S MCP+ C C L + C DLG LK VP E +P+
Sbjct: 19 LPPTYSAMCPFGCHCHL-----RVVQCS-------------DLG---LKAVPKEISPDTT 57
Query: 108 TIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
L + N+ I + F G+ L L L +N I+ + + F + L
Sbjct: 58 L-------------LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
Q+LY+ N + IP ++ L +LR+ NRI K+
Sbjct: 105 QKLYISKNHLVEIPPNLPSSLVELRI---HDNRIRKV 138
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 7/92 (7%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK 176
+ L ELH+ ++ I AI L L L HN I + + + + L+EL+LD NK
Sbjct: 193 ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK 252
Query: 177 IESIPSSVFMHLSDLRVLSLAH---NRISKLA 205
+ +P+ L DL++L + + N I+K+
Sbjct: 253 LSRVPAG----LPDLKLLQVVYLHTNNITKVG 280
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 87/215 (40%), Gaps = 16/215 (7%)
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFP 298
L+ +C GL+ + I D LDL N N
Sbjct: 35 LRVVQCSDLGLKAV---PKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNL-TNLIELDISYNKLDRLEVASFDPIE 357
I EK+FS KLQ L + +N L ++ NL ++L+EL I N++ ++ F +
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIP----PNLPSSLVELRIHDNRIRKVPKGVFSGLR 147
Query: 358 NSLRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
N + +++ GN ++ I++ T IPK L + L L+L N
Sbjct: 148 N-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPET---LNELHLDHN 203
Query: 418 NLQ--DIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+Q ++ +LL S KL L L N+ + + S
Sbjct: 204 KIQAIELEDLLRYS--KLYRLGLGHNQIRMIENGS 236
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 91 GTEVLKIVPSEEN--PNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNL 148
G E +P ++ P + + P F HL + ++ + A+ P P L+L
Sbjct: 6 GAETTSGIPDLDSLPPTYSAMCP-FGCHCHLRVVQCSDLGLKAV---PKEISPDTTLLDL 61
Query: 149 THNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
+N+I+ L +FKG+ +L L L NKI I F L L+ L ++ N + ++ P
Sbjct: 62 QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP 119
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 58/275 (21%)
Query: 87 QMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYL 146
Q++ G +V + P LE L I+++ + I + +L L
Sbjct: 155 QLNFGNQVTDLKP-------------LANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 147 NLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
T+N I+ + + NL EL L+ N+++ I L++L L LA+N+IS LAP
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
Query: 207 RXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
N I I+P + L + LE+I+P+ S L +L YL
Sbjct: 256 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 309
Query: 267 DLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT 326
L +N PV SS KLQ L N+++ V++
Sbjct: 310 TLYFNNISDIS--------------------PV------SSLTKLQRLFFSNNKVSDVSS 343
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLR 361
A NLTN+ L +N +++ P+ N R
Sbjct: 344 LA--NLTNINWLSAGHN-----QISDLTPLANLTR 371
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 45/249 (18%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
LE L I+++ + I + +L L T+N I+ + + NL EL L
Sbjct: 172 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 227
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
+ N+++ I L++L L LA+N+IS LAP N I I+P
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXX 292
+ L + LE+I+P+ S L +L YL L +N
Sbjct: 282 LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDIS--------------- 324
Query: 293 XGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
PV SS KLQ L N+++ V++ A NLTN+ L +N +++
Sbjct: 325 -----PV------SSLTKLQRLFFANNKVSDVSSLA--NLTNINWLSAGHN-----QISD 366
Query: 353 FDPIENSLR 361
P+ N R
Sbjct: 367 LTPLANLTR 375
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 45/249 (18%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
LE L I+++ + I + +L L T+N I+ + + NL EL L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
+ N+++ I L++L L LA+N+IS LAP N I I+P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXX 292
+ L + LE+I+P+ S L +L YL L +N
Sbjct: 279 LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDIS--------------- 321
Query: 293 XGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
PV SS KLQ L N+++ V++ A NLTN+ L +N +++
Sbjct: 322 -----PV------SSLTKLQRLFFSNNKVSDVSSLA--NLTNINWLSAGHN-----QISD 363
Query: 353 FDPIENSLR 361
P+ N R
Sbjct: 364 LTPLANLTR 372
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 38/146 (26%)
Query: 303 KSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRD 362
+ S LQ L N++ + A NLT L LDIS NK+ + V + L +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVLA------KLTN 196
Query: 363 LK--ISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
L+ I+ NN I+D+ P G+ +L L+L+GN L+
Sbjct: 197 LESLIATNN-------------------QISDI----TPLGILT---NLDELSLNGNQLK 230
Query: 421 DIHNLLYQSNIKLTHLDLSRNKFKGF 446
DI L +N LT LDL+ N+
Sbjct: 231 DIGTLASLTN--LTDLDLANNQISNL 254
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 58/275 (21%)
Query: 87 QMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYL 146
Q++ G +V + P LE L I+++ + I + +L L
Sbjct: 155 QLNFGNQVTDLKP-------------LANLTTLERLDISSNKVSDISV--LAKLTNLESL 199
Query: 147 NLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
T+N I+ + + NL EL L+ N+++ I L++L L LA+N+IS LAP
Sbjct: 200 IATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 255
Query: 207 RXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
N I I+P + L + LE+I+P+ S L +L YL
Sbjct: 256 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYL 309
Query: 267 DLGYNQXXXXXXXXXXXXXXXXXXXXXGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT 326
L +N PV SS KLQ L N+++ V++
Sbjct: 310 TLYFNNISDIS--------------------PV------SSLTKLQRLFFYNNKVSDVSS 343
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLR 361
A NLTN+ L +N +++ P+ N R
Sbjct: 344 LA--NLTNINWLSAGHN-----QISDLTPLANLTR 371
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 45/249 (18%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
LE L I+++ + I + +L L T+N I+ + + NL EL L
Sbjct: 173 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 228
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
+ N+++ I L++L L LA+N+IS LAP N I I+P
Sbjct: 229 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 282
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXX 292
+ L + LE+I+P+ S L +L YL L +N
Sbjct: 283 LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDIS--------------- 325
Query: 293 XGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
PV SS KLQ L N+++ V++ A NLTN+ L +N +++
Sbjct: 326 -----PV------SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHN-----QISD 367
Query: 353 FDPIENSLR 361
P+ N R
Sbjct: 368 LTPLANLTR 376
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 45/249 (18%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
LE L I+++ + I + +L L T+N I+ + + NL EL L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
+ N+++ I L++L L LA+N+IS LAP N I I+P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXX 292
+ L + LE+I+P+ S L +L YL L +N
Sbjct: 279 LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDIS--------------- 321
Query: 293 XGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
PV SS KLQ L N+++ V++ A NLTN+ L +N +++
Sbjct: 322 -----PV------SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHN-----QISD 363
Query: 353 FDPIENSLR 361
P+ N R
Sbjct: 364 LTPLANLTR 372
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 38/146 (26%)
Query: 303 KSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRD 362
+ S LQ L N++ + A NLT L LDIS NK+ + V + L +
Sbjct: 145 SALSGLTSLQQLSFSSNQVTDLKPLA--NLTTLERLDISSNKVSDISVLA------KLTN 196
Query: 363 LK--ISGNNIQXXXXXXXXXXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
L+ I+ NN I+D+ P G+ +L L+L+GN L+
Sbjct: 197 LESLIATNN-------------------QISDI----TPLGILT---NLDELSLNGNQLK 230
Query: 421 DIHNLLYQSNIKLTHLDLSRNKFKGF 446
DI L +N LT LDL+ N+
Sbjct: 231 DIGTLASLTN--LTDLDLANNQISNL 254
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 45/249 (18%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
LE L I+++ + I + +L L T+N I+ + + NL EL L
Sbjct: 169 LANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 224
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYNDIVEINPEI 232
+ N+++ I L++L L LA+N+IS LAP N I I+P
Sbjct: 225 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 278
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXXXXXXXXXXXX 292
+ L + LE+I+P+ S L +L YL L +N
Sbjct: 279 LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDIS--------------- 321
Query: 293 XGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
PV SS KLQ L N+++ V++ A NLTN+ L +N +++
Sbjct: 322 -----PV------SSLTKLQRLFFYNNKVSDVSSLA--NLTNINWLSAGHN-----QISD 363
Query: 353 FDPIENSLR 361
P+ N R
Sbjct: 364 LTPLANLTR 372
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGN 368
L L L N ++ ++ A + LT+L +L+ S N +V P+ N +L L IS N
Sbjct: 131 LNRLELSSNTISDIS--ALSGLTSLQQLNFSSN-----QVTDLKPLANLTTLERLDISSN 183
Query: 369 NIQXXXXXXXXXXXXX--XXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLL 426
+ I+D+ P G+ +L L+L+GN L+DI L
Sbjct: 184 KVSDISVLAKLTNLESLIATNNQISDI----TPLGILT---NLDELSLNGNQLKDIGTLA 236
Query: 427 YQSNIKLTHLDLSRNKFKGF 446
+N LT LDL+ N+
Sbjct: 237 SLTN--LTDLDLANNQISNL 254
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
LQVL LK +R+ + AF +L +L LD+S N L L + F P+ +SL+ L + GN
Sbjct: 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL-SSLKYLNLMGNPY 110
Query: 371 Q 371
Q
Sbjct: 111 Q 111
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN-----NITSLLDYNFKGM 164
G F LE L ++++ + ++ F + SL+YLNL N +TSL F +
Sbjct: 67 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----FPNL 122
Query: 165 MNLQELYLD----FNKIESIPSSVFMHLSDLRVLSLA 197
NLQ L + F++I I + L++L + +L+
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
LQVL LK +R+ + AF +L +L LD+S N L L + F P+ +SL+ L + GN
Sbjct: 78 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL-SSLKYLNLMGNPY 136
Query: 371 Q 371
Q
Sbjct: 137 Q 137
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 13/97 (13%)
Query: 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN-----NITSLLDYNFKGM 164
G F LE L ++++ + ++ F + SL+YLNL N +TSL F +
Sbjct: 93 GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL----FPNL 148
Query: 165 MNLQELYLD----FNKIESIPSSVFMHLSDLRVLSLA 197
NLQ L + F++I I + L++L + +L+
Sbjct: 149 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 185
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L YLNL N IT + ++ L LY+ NKI I S +L++LR L L + IS
Sbjct: 68 LEYLNLNGNQITDI--SPLSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNIS 123
Query: 203 KLAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILAD 262
++P +N + +++P + L ++++ P+ L D
Sbjct: 124 DISPLANLTKXYSLNLGANHN-LSDLSP--LSNXTGLNYLTVTESKVKDVTPIAN--LTD 178
Query: 263 LIYLDLGYNQ 272
L L L YNQ
Sbjct: 179 LYSLSLNYNQ 188
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N +T Q +L EL++ I I P + LNL N+ S L
Sbjct: 98 NKITDISALQNLTNLRELYLNEDNISDIS--PLANLTKXYSLNLGANHNLSDLSP-LSNX 154
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRXXXXXXXXXXXXXXYND 224
L L + +K++ + + +L+DL LSL +N+I ++P N
Sbjct: 155 TGLNYLTVTESKVKDV--TPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQ 210
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272
I +I P + L + K + + +++P+ L+ L +L++G NQ
Sbjct: 211 ITDITP--VANXTRLNSLKIGNNKITDLSPLAN--LSQLTWLEIGTNQ 254
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 59/147 (40%), Gaps = 34/147 (23%)
Query: 53 SVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPI 112
S CP C C+ + C+ +A+ +P G +P+ HL I
Sbjct: 10 SAACPSQCSCS-----GTTVNCQERSLAS-VPAG-----------IPTTTQVLHLYI--- 49
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
Q LE P + F + L YLNL N +T+L F + L L L
Sbjct: 50 -NQITKLE---------PGV----FDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLAL 95
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHN 199
N+++SIP VF +L L + L +N
Sbjct: 96 HINQLKSIPMGVFDNLKSLTHIYLFNN 122
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
QVL L N++ K+ F +LT L L+++ N+L L V FD
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFD 85
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 101 EENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
EE P+HL F ++LE + ++ + + F +P L+ LNL N + S+ D
Sbjct: 159 EEMPSHL-----FDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
Query: 161 FKGMMNLQELYLDFN 175
F + +LQ+++L N
Sbjct: 214 FDRLTSLQKIWLHTN 228
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 7/94 (7%)
Query: 117 QHLEELH------ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
QHL+ LH T + I + + +L +L L NI + + F + NL+ +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLEL-RANIEEMPSHLFDDLENLESI 175
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
NK+ +P +F + L+ L+LA N++ +
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSV 209
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 61/156 (39%), Gaps = 27/156 (17%)
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQXXXXXXXX 379
RL + T++ NL L++ N ++ + FD +EN L ++ N ++
Sbjct: 134 RLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLEN-LESIEFGSNKLR-------- 183
Query: 380 XXXXXXXXXXIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
+P+G+F P L+ LNL+ N L+ + + ++ L + L
Sbjct: 184 -----------------QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLH 226
Query: 440 RNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSSMGK 475
N + + +S N + + A S GK
Sbjct: 227 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGK 262
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 34/73 (46%)
Query: 135 HPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVL 194
H F + +L + N + + F M L++L L N+++S+P +F L+ L+ +
Sbjct: 164 HLFDDLENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKI 223
Query: 195 SLAHNRISKLAPR 207
L N PR
Sbjct: 224 WLHTNPWDCSCPR 236
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXX 282
N I I+ + L+ S G+ I +S L L +LDL YN
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 283 XXXXXXXXXXXGNHFPVILEKS-FSSQFKLQVLCLKR-NRLAKVTTTAFTNLTNLIELDI 340
GN + + E S FS KLQ+L + + K+ F LT L EL+I
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 341 SYNKLDRLEVASFDPIEN 358
+ L E S I+N
Sbjct: 182 DASDLQSYEPKSLKSIQN 199
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
LQ L L N + + +F++L +L LD+SYN L L + F P+ +SL L + GN
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPY 136
Query: 371 QXXXXXXXXXXXXXXXXXXIADMN-YTDIPKGLFKMNPHLQFLNLSGNNLQ 420
+ + +M+ +T I + F L+ L + ++LQ
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P + L+L+ N+I+ L + + L+ L L N+I S+ VF+ DL L ++HNR
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 201 ISKLA 205
+ ++
Sbjct: 112 LQNIS 116
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P ++ L+L +N I S+ + + LQEL + N+++S+P VF L+ L+ + L N
Sbjct: 450 PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
Query: 201 ISKLAP 206
P
Sbjct: 509 WDCTCP 514
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L L ++++ I ++ FH F L YL+++HN + ++ + M +L+ L L FN +
Sbjct: 78 LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI---SCCPMASLRHLDLSFNDFD 134
Query: 179 SIP-SSVFMHLSDLRVLSLAHNRISKL 204
+P F +L+ L L L+ + +L
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQL 161
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL 204
L LYL+ N + +P+ + +LS+LRVL L+HNR++ L
Sbjct: 249 LTRLYLNGNSLTELPAEI-KNLSNLRVLDLSHNRLTSL 285
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/240 (22%), Positives = 97/240 (40%), Gaps = 8/240 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+EL +T + + + G+ +L+ L L+ N +L + +L L +
Sbjct: 274 FHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332
Query: 173 DFN-KIESIPSSVFMHLSDLRVLSLAHNRI--SKLAPRXXXXXXXXXXXXXXYNDIVEIN 229
N K + + +L +LR L L+H+ I S YN+ + +
Sbjct: 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392
Query: 230 PEIFKDIQELKTFKCRSCGLENINPMM-YSILADLIYLDLGYNQXXXXXXXXXXXXXXXX 288
E FK+ +L+ L+ + + L L L+L ++
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452
Query: 289 XXXXXGNHFP---VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
GNHFP + S + +L++L L L+ + AFT+L + +D+S+N+L
Sbjct: 453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 7/95 (7%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN-----NITSLLDYNFKGMMNL 167
FQ L+ L++++S + F G+P+L++LNL N NI + + + L
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK--TNSLQTLGRL 478
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
+ L L F + SI F L + + L+HNR++
Sbjct: 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 50/130 (38%), Gaps = 20/130 (15%)
Query: 72 IVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPA 131
I C RG I L + ++ E+ + I + + +LEE + S
Sbjct: 522 IACNRG-------ISAAQLKADWTRLADDEDTGPKIQI--FYXGYNNLEEFPASASLQKX 572
Query: 132 IGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191
+ L L+ HN + L F + L +L LD+N+IE IP +
Sbjct: 573 V---------KLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQV 621
Query: 192 RVLSLAHNRI 201
L +HN++
Sbjct: 622 EGLGFSHNKL 631
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQXXXXXXXXXX 282
N I I+ + L+ S G+ I +S L L +LDL YN
Sbjct: 36 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 95
Query: 283 XXXXXXXXXXXGNHFPVILEKS-FSSQFKLQVLCLKR-NRLAKVTTTAFTNLTNLIELDI 340
GN + + E S FS KLQ+L + + K+ F LT L EL+I
Sbjct: 96 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 155
Query: 341 SYNKLDRLEVASFDPIEN 358
+ L E S I+N
Sbjct: 156 DASDLQSYEPKSLKSIQN 173
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
LQ L L N + + +F++L +L LD+SYN L L + F P+ +SL L + GN
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL-SSLTFLNLLGNPY 110
Query: 371 QXXXXXXXXXXXXXXXXXXIADMN-YTDIPKGLFKMNPHLQFLNLSGNNLQ 420
+ + +M+ +T I + F L+ L + ++LQ
Sbjct: 111 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 161
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLI 136
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 60 CECALDDRGRYEIVCRRGDM---ANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGPIF 113
CE + G Y+ + + NPI +G + + K+V E N L PI
Sbjct: 62 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI- 120
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGM-------- 164
+ L+EL++ ++ I + ++ + +L +L+L+ N I S+ + + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 165 -------------------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240
Query: 206 PR 207
PR
Sbjct: 241 PR 242
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLI 137
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 60 CECALDDRGRYEIVCRRGDM---ANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGPIF 113
CE + G Y+ + + NPI +G + + K+V E N L PI
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI- 121
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGM-------- 164
+ L+EL++ ++ I + ++ + +L +L+L+ N I S+ + + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 181
Query: 165 -------------------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 182 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 241
Query: 206 PR 207
PR
Sbjct: 242 PR 243
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
+G++NLQ L L++ I S+P+S+ +L +L+ L + ++ +S L P
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASI-ANLQNLKSLKIRNSPLSALGP 223
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 110 VETNLASLENFPIGHLKTLKELNVAHNLI 138
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 60 CECALDDRGRYEIVCRRGDM---ANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGPIF 113
CE + G Y+ + + NPI +G + + K+V E N L PI
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI- 122
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGM-------- 164
+ L+EL++ ++ I + ++ + +L +L+L+ N I S+ + + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 182
Query: 165 -------------------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 183 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 242
Query: 206 PR 207
PR
Sbjct: 243 PR 244
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 49 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 108
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 109 VETNLASLENFPIGHLKTLKELNVAHNLI 137
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 60 CECALDDRGRYEIVCRRGDM---ANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGPIF 113
CE + G Y+ + + NPI +G + + K+V E N L PI
Sbjct: 63 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI- 121
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGM-------- 164
+ L+EL++ ++ I + ++ + +L +L+L+ N I S+ + + +
Sbjct: 122 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 181
Query: 165 -------------------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 182 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 241
Query: 206 PR 207
PR
Sbjct: 242 PR 243
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 42/89 (47%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 50 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 109
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+ S+ + HL L+ L++AHN I
Sbjct: 110 LETNLASLENFPIGHLKTLKELNVAHNLI 138
Score = 32.3 bits (72), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 76/182 (41%), Gaps = 35/182 (19%)
Query: 60 CECALDDRGRYEIVCRRGDM---ANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGPIF 113
CE + G Y+ + + NPI +G + + K+V E N L PI
Sbjct: 64 CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPI- 122
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGM-------- 164
+ L+EL++ ++ I + ++ + +L +L+L+ N I S+ + + +
Sbjct: 123 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 182
Query: 165 -------------------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ L+EL LD N+++S+P +F L+ L+ + L N
Sbjct: 183 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 242
Query: 206 PR 207
PR
Sbjct: 243 PR 244
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRI 201
L+YLNL++N L D FK L+ L + F + P S F +L LRVL+L+H +
Sbjct: 377 LQYLNLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLL 436
Query: 202 SK-----LAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM 256
LA I + N + + + L+ SC L +I+
Sbjct: 437 DTSNQHLLAGLQDLRHLNLQGNSFQDGSISKTN--LLQMVGSLEILILSSCNLLSIDQQA 494
Query: 257 YSILADLIYLDLGYN 271
+ L ++ +LDL +N
Sbjct: 495 FHGLRNVNHLDLSHN 509
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNIT--SLLDYN-FKGMMNLQE 169
FQ L+ L++T F+ H G+P LR+LNL N+ ++ N + + +L+
Sbjct: 418 FQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS 202
L L + SI F L + + L+HN ++
Sbjct: 478 LILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRI 201
L+ LNL+HN L FK L+ L L F ++ + P S F +L L+VL+L + +
Sbjct: 375 LQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFL 434
Query: 202 SK-----LAPRXXXXXXXXXXXXXXYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM 256
LA I + N + + + L+ SCGL +I+
Sbjct: 435 DTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTN--LLQTVGSLEVLILSSCGLLSIDQQA 492
Query: 257 YSILADLIYLDLGYN 271
+ L + ++DL +N
Sbjct: 493 FHSLGKMSHVDLSHN 507
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
LN++ N I+ L + + L+ L + N+I+ + SVF +L L L+HN++ K++
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS 85
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P ++ L+L N I S+ K + LQEL + N+++S+P +F L+ L+ + L N
Sbjct: 421 PRIKVLDLHSNKIKSIPKQVVK-LEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP 479
Query: 201 ISKLAPR 207
PR
Sbjct: 480 WDCSCPR 486
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
QVL L NR+ K+ F LT L LD+ N+L L FD + L L ++ N ++
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-LTQLSLNDNQLK 91
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
Q F +L+ELH++++ I + P + L L++ N + +L N L L+L
Sbjct: 59 MQFFTNLKELHLSHNQISDL--SPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFL 113
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
D N++ S +HL +L +LS+ +N++ +
Sbjct: 114 DNNELRDTDS--LIHLKNLEILSIRNNKLKSIV 144
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168
I P L LH++ +++ + LR L L N + + + L+
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469
Query: 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
L LDFN + S + ++L +SL++NR++ P+
Sbjct: 470 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 43/99 (43%)
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168
I P L LH++ +++ + LR L L N + + + L+
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 466
Query: 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
L LDFN + S + ++L +SL++NR++ P+
Sbjct: 467 TLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 156 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 193
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 131 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 136 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 134 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 171
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 154 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 191
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+IS + P
Sbjct: 131 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 168
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
QVL L N++ K+ F LT L LD+ N+L L FD
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 75
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
QVL L N++ K+ F LT L LD+ N+L L FD
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD 83
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L+ LYL NKI I +V L+ L LSL N+I ++ P
Sbjct: 134 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP 171
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 338 LDISYNKLDRLEVASFDPIENS-LRDLKISGNNIQXXXXXXXXXXXXXXXXXXIADMNYT 396
+D SYN++ ++ +FDP++ + + + +S N+ ++ +
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL--------------------SNNQIS 446
Query: 397 DIPKGLFKMNPHLQFLNLSGNNLQDI-------HNLLYQSNIKLTHLDLSRNKF 443
PK LF L +NL GN L +I N +++ LT +DL NK
Sbjct: 447 KFPKELFSTGSPLSSINLXGNXLTEIPKNSLKDENENFKNTYLLTSIDLRFNKL 500
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,194,464
Number of Sequences: 62578
Number of extensions: 455816
Number of successful extensions: 1937
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 1042
Number of HSP's gapped (non-prelim): 694
length of query: 497
length of database: 14,973,337
effective HSP length: 103
effective length of query: 394
effective length of database: 8,527,803
effective search space: 3359954382
effective search space used: 3359954382
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)