Query psy10289
Match_columns 497
No_of_seqs 373 out of 4391
Neff 10.3
Searched_HMMs 29240
Date Fri Aug 16 22:38:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10289.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10289hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t6q_A CD180 antigen; protein- 100.0 1.4E-47 4.6E-52 400.6 24.2 459 4-479 52-571 (606)
2 1ziw_A TOLL-like receptor 3; i 100.0 3.4E-46 1.2E-50 395.1 24.3 366 112-479 241-634 (680)
3 3vq2_A TLR4, TOLL-like recepto 100.0 4.7E-45 1.6E-49 381.3 27.3 402 71-479 15-569 (606)
4 3rgz_A Protein brassinosteroid 100.0 2.1E-45 7.2E-50 392.8 20.8 392 90-488 294-765 (768)
5 3t6q_A CD180 antigen; protein- 100.0 5.5E-44 1.9E-48 373.3 30.5 401 9-448 33-517 (606)
6 3rgz_A Protein brassinosteroid 100.0 2.2E-44 7.7E-49 384.8 23.3 392 71-468 204-717 (768)
7 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-42 5E-47 367.3 32.5 446 9-468 25-597 (680)
8 3v47_A TOLL-like receptor 5B a 100.0 1.2E-41 4.2E-46 343.0 32.5 383 55-450 3-414 (455)
9 4g8a_A TOLL-like receptor 4; l 100.0 1E-41 3.4E-46 358.2 29.6 415 57-480 24-592 (635)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-43 1.5E-47 378.7 19.2 427 8-475 23-567 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 7.4E-41 2.5E-45 347.1 31.9 395 71-474 11-537 (570)
12 3vq2_A TLR4, TOLL-like recepto 100.0 5.5E-41 1.9E-45 350.5 27.9 402 9-451 32-565 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 7.7E-42 2.6E-46 352.8 19.5 391 55-472 3-514 (549)
14 2id5_A Lingo-1, leucine rich r 100.0 6.9E-40 2.4E-44 332.1 30.1 334 55-422 2-335 (477)
15 3v47_A TOLL-like receptor 5B a 100.0 1E-40 3.5E-45 336.3 20.1 354 117-472 30-412 (455)
16 4eco_A Uncharacterized protein 100.0 2.4E-40 8.4E-45 345.9 23.3 348 109-468 198-600 (636)
17 3j0a_A TOLL-like receptor 5; m 100.0 8.8E-40 3E-44 352.9 26.7 390 70-468 7-539 (844)
18 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-40 2.9E-44 337.5 23.9 390 9-448 26-514 (549)
19 2z63_A TOLL-like receptor 4, v 100.0 8.2E-40 2.8E-44 339.3 20.6 349 117-468 28-507 (570)
20 4eco_A Uncharacterized protein 100.0 5E-39 1.7E-43 336.0 24.0 351 90-450 206-606 (636)
21 2id5_A Lingo-1, leucine rich r 100.0 4.1E-38 1.4E-42 319.1 27.4 326 120-450 14-339 (477)
22 4ecn_A Leucine-rich repeat pro 100.0 1.8E-38 6.1E-43 337.5 24.9 348 109-468 440-840 (876)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2E-37 6.9E-42 320.2 32.0 385 70-474 34-516 (562)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-37 4.2E-42 319.1 29.8 385 71-476 4-489 (520)
25 2z7x_B TOLL-like receptor 1, v 100.0 7.2E-39 2.5E-43 328.3 19.0 357 93-468 3-457 (520)
26 1o6v_A Internalin A; bacterial 100.0 2.1E-36 7.1E-41 305.3 33.7 326 91-450 69-394 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-37 3.9E-42 322.1 24.4 358 93-468 34-486 (562)
28 4ecn_A Leucine-rich repeat pro 100.0 8.5E-38 2.9E-42 332.3 21.0 352 90-452 448-848 (876)
29 4fmz_A Internalin; leucine ric 100.0 7.9E-36 2.7E-40 289.6 30.9 309 112-445 39-347 (347)
30 3o6n_A APL1; leucine-rich repe 100.0 1.2E-36 4.1E-41 300.0 25.1 313 115-447 43-355 (390)
31 4g8a_A TOLL-like receptor 4; l 100.0 3E-36 1E-40 316.5 29.5 399 10-450 53-586 (635)
32 1o6v_A Internalin A; bacterial 100.0 2.2E-35 7.4E-40 297.8 29.5 342 91-468 47-388 (466)
33 3o6n_A APL1; leucine-rich repe 100.0 6.4E-35 2.2E-39 287.7 27.7 313 90-426 45-358 (390)
34 3oja_B Anopheles plasmodium-re 100.0 2.1E-35 7E-40 306.9 25.2 310 116-445 50-359 (597)
35 1jl5_A Outer protein YOPM; leu 100.0 1.2E-33 4.2E-38 282.7 34.7 383 7-446 9-411 (454)
36 4fmz_A Internalin; leucine ric 100.0 2.8E-33 9.6E-38 271.6 32.5 302 91-420 45-346 (347)
37 2ft3_A Biglycan; proteoglycan, 100.0 7.3E-34 2.5E-38 273.8 26.5 287 143-442 35-331 (332)
38 1xku_A Decorin; proteoglycan, 100.0 3.8E-33 1.3E-37 268.6 31.3 306 52-418 21-330 (330)
39 1xku_A Decorin; proteoglycan, 100.0 1.9E-33 6.7E-38 270.6 28.9 289 118-442 32-330 (330)
40 3oja_B Anopheles plasmodium-re 100.0 2E-34 6.7E-39 299.5 23.3 317 139-475 49-365 (597)
41 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-33 1.2E-37 279.6 30.2 190 112-325 59-249 (457)
42 2ft3_A Biglycan; proteoglycan, 100.0 7.4E-33 2.5E-37 266.8 27.9 306 51-418 22-331 (332)
43 3bz5_A Internalin-J, INLJ; leu 100.0 5.9E-33 2E-37 278.0 27.5 342 4-452 37-396 (457)
44 1jl5_A Outer protein YOPM; leu 100.0 1.2E-30 4.2E-35 260.9 30.8 382 4-446 29-431 (454)
45 3zyj_A Leucine-rich repeat-con 100.0 3.7E-30 1.3E-34 257.6 27.3 262 51-346 30-292 (440)
46 2z80_A TOLL-like receptor 2, v 100.0 7.1E-31 2.4E-35 255.1 20.9 283 115-423 29-317 (353)
47 3zyi_A Leucine-rich repeat-con 100.0 5.3E-30 1.8E-34 257.4 27.6 261 52-346 42-303 (452)
48 1z7x_W Ribonuclease inhibitor; 100.0 2.9E-33 1E-37 282.3 2.7 355 90-446 3-413 (461)
49 1ozn_A Reticulon 4 receptor; N 100.0 2.1E-30 7.2E-35 244.0 20.8 237 55-322 1-238 (285)
50 2z66_A Variable lymphocyte rec 100.0 7.1E-30 2.4E-34 243.0 21.0 257 56-371 1-261 (306)
51 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-32 1.2E-36 274.5 4.3 335 110-446 49-442 (461)
52 2z80_A TOLL-like receptor 2, v 100.0 1.4E-29 4.6E-34 246.1 20.7 255 117-372 52-315 (353)
53 2z66_A Variable lymphocyte rec 100.0 1.9E-29 6.5E-34 240.1 18.6 261 166-429 29-296 (306)
54 3zyj_A Leucine-rich repeat-con 100.0 1.6E-28 5.4E-33 245.8 25.8 249 118-372 44-293 (440)
55 3zyi_A Leucine-rich repeat-con 100.0 2.1E-28 7.2E-33 245.8 25.3 249 118-372 55-304 (452)
56 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-30 3.2E-34 242.6 14.1 249 117-369 50-302 (313)
57 1ogq_A PGIP-2, polygalacturona 100.0 9.1E-30 3.1E-34 242.6 13.1 248 165-442 50-302 (313)
58 1ozn_A Reticulon 4 receptor; N 100.0 1.5E-28 5.2E-33 231.3 19.5 224 120-346 14-238 (285)
59 3g06_A SSPH2 (leucine-rich rep 100.0 1.4E-26 4.8E-31 238.6 28.2 266 118-429 41-306 (622)
60 3g06_A SSPH2 (leucine-rich rep 100.0 2.2E-26 7.6E-31 237.1 29.6 262 141-448 40-301 (622)
61 3o53_A Protein LRIM1, AGAP0063 100.0 7.1E-29 2.4E-33 237.1 8.6 261 170-446 15-278 (317)
62 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4E-33 235.6 7.1 261 118-393 11-272 (317)
63 2xwt_C Thyrotropin receptor; s 99.9 8.9E-26 3E-30 206.6 19.0 226 54-319 2-236 (239)
64 4fcg_A Uncharacterized protein 99.9 6.1E-26 2.1E-30 217.5 18.0 225 116-345 80-313 (328)
65 1wwl_A Monocyte differentiatio 99.9 1.2E-27 4.2E-32 228.0 6.1 253 161-446 39-311 (312)
66 2z62_A TOLL-like receptor 4, v 99.9 2.7E-25 9.1E-30 208.1 20.8 204 142-346 29-237 (276)
67 2o6q_A Variable lymphocyte rec 99.9 9.5E-25 3.2E-29 203.5 23.4 202 118-346 17-218 (270)
68 2z62_A TOLL-like receptor 4, v 99.9 9.1E-25 3.1E-29 204.4 23.1 204 118-322 29-237 (276)
69 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5.2E-32 227.3 4.2 252 137-422 39-311 (312)
70 3ogk_B Coronatine-insensitive 99.9 5E-28 1.7E-32 251.8 0.0 352 91-447 139-529 (592)
71 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.2E-29 201.6 23.0 202 167-372 18-219 (270)
72 3oja_A Leucine-rich immune mol 99.9 2.7E-26 9.3E-31 231.7 10.8 235 142-391 35-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 9.1E-26 3.1E-30 227.9 13.3 234 190-439 35-270 (487)
74 4fcg_A Uncharacterized protein 99.9 1.5E-24 5E-29 207.9 18.9 84 141-227 81-164 (328)
75 1p9a_G Platelet glycoprotein I 99.9 6.8E-25 2.3E-29 206.3 14.4 206 233-447 6-211 (290)
76 3rfs_A Internalin B, repeat mo 99.9 2.9E-24 9.9E-29 200.4 17.1 208 112-330 36-243 (272)
77 4ay9_X Follicle-stimulating ho 99.9 3.3E-24 1.1E-28 207.6 18.0 248 55-342 1-255 (350)
78 2xwt_C Thyrotropin receptor; s 99.9 1.9E-24 6.5E-29 197.7 14.5 208 129-368 23-236 (239)
79 1p9a_G Platelet glycoprotein I 99.9 2E-23 6.7E-28 196.3 20.9 182 112-299 5-186 (290)
80 3rfs_A Internalin B, repeat mo 99.9 1.2E-24 4E-29 203.0 12.3 227 117-356 19-245 (272)
81 3goz_A Leucine-rich repeat-con 99.9 3.2E-24 1.1E-28 208.7 11.1 257 170-446 3-299 (362)
82 3ogk_B Coronatine-insensitive 99.9 4.1E-25 1.4E-29 229.9 3.7 327 112-441 187-548 (592)
83 2p1m_B Transport inhibitor res 99.9 6.8E-26 2.3E-30 235.8 -3.4 325 113-444 152-519 (594)
84 1h6u_A Internalin H; cell adhe 99.9 1E-22 3.6E-27 193.2 18.7 197 112-324 36-232 (308)
85 3m19_A Variable lymphocyte rec 99.9 2.3E-22 7.9E-27 185.2 19.1 159 117-275 35-193 (251)
86 3goz_A Leucine-rich repeat-con 99.9 6.8E-24 2.3E-28 206.4 8.5 260 145-424 2-301 (362)
87 3m19_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 182.7 20.3 180 117-299 14-193 (251)
88 1h6u_A Internalin H; cell adhe 99.9 2.6E-22 9E-27 190.5 17.8 211 122-350 24-234 (308)
89 4glp_A Monocyte differentiatio 99.9 1E-22 3.4E-27 193.8 12.8 200 239-445 93-308 (310)
90 4ay9_X Follicle-stimulating ho 99.9 2.3E-22 7.7E-27 194.7 15.3 239 120-368 12-256 (350)
91 2o6s_A Variable lymphocyte rec 99.9 6.5E-22 2.2E-26 176.7 16.9 188 56-284 1-188 (208)
92 2p1m_B Transport inhibitor res 99.9 3.6E-24 1.2E-28 222.8 0.9 327 115-446 103-496 (594)
93 4glp_A Monocyte differentiatio 99.9 1.2E-22 4.2E-27 193.2 10.9 200 166-371 92-307 (310)
94 2ca6_A RAN GTPase-activating p 99.9 2.5E-23 8.5E-28 204.5 2.6 243 160-423 27-319 (386)
95 4fdw_A Leucine rich hypothetic 99.9 1.6E-20 5.3E-25 184.0 22.3 265 115-394 111-381 (401)
96 4fdw_A Leucine rich hypothetic 99.9 1.9E-20 6.4E-25 183.4 22.5 265 138-417 110-380 (401)
97 2ca6_A RAN GTPase-activating p 99.9 7.3E-23 2.5E-27 201.1 5.1 245 185-447 28-319 (386)
98 2ast_B S-phase kinase-associat 99.9 6.4E-22 2.2E-26 190.6 11.2 177 166-343 71-257 (336)
99 2v9t_B SLIT homolog 2 protein 99.9 1E-20 3.5E-25 170.2 17.9 164 53-250 2-165 (220)
100 3sb4_A Hypothetical leucine ri 99.9 1.9E-22 6.6E-27 193.5 6.3 287 116-438 24-328 (329)
101 4fs7_A Uncharacterized protein 99.9 2.2E-20 7.5E-25 183.7 20.7 316 111-446 65-380 (394)
102 2xot_A Amphoterin-induced prot 99.9 5.8E-21 2E-25 185.5 16.2 191 50-274 6-202 (361)
103 2ast_B S-phase kinase-associat 99.9 2.6E-22 9E-27 193.4 6.4 251 167-450 49-312 (336)
104 2o6s_A Variable lymphocyte rec 99.8 2.7E-20 9.4E-25 166.1 17.3 180 120-309 10-189 (208)
105 3sb4_A Hypothetical leucine ri 99.8 1.5E-20 5E-25 180.4 14.6 243 116-364 48-327 (329)
106 4fs7_A Uncharacterized protein 99.8 1.5E-19 5.2E-24 177.7 21.5 307 128-453 58-364 (394)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 7.9E-20 2.7E-24 164.4 17.3 163 54-250 3-166 (220)
108 1h6t_A Internalin B; cell adhe 99.8 1.7E-19 5.7E-24 169.6 16.2 171 113-297 42-212 (291)
109 1h6t_A Internalin B; cell adhe 99.8 2E-19 6.8E-24 169.1 15.6 189 119-323 26-214 (291)
110 2xot_A Amphoterin-induced prot 99.8 2E-19 6.8E-24 174.7 15.8 177 120-299 21-203 (361)
111 3cvr_A Invasion plasmid antige 99.8 2.4E-19 8.4E-24 182.4 16.4 168 238-430 81-253 (571)
112 2v9t_B SLIT homolog 2 protein 99.8 7.7E-19 2.6E-23 157.9 16.3 152 120-274 14-165 (220)
113 4gt6_A Cell surface protein; l 99.8 7E-18 2.4E-22 165.9 23.1 307 112-442 58-368 (394)
114 3cvr_A Invasion plasmid antige 99.8 1.8E-18 6.1E-23 176.1 18.6 191 118-353 60-250 (571)
115 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.6E-23 155.7 15.7 152 120-274 14-166 (220)
116 1m9s_A Internalin B; cell inva 99.8 8.9E-19 3.1E-23 180.3 15.7 176 112-301 38-213 (605)
117 4gt6_A Cell surface protein; l 99.8 1.7E-17 5.7E-22 163.1 23.4 318 128-469 50-371 (394)
118 3e6j_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 152.6 18.6 133 117-250 40-172 (229)
119 3e6j_A Variable lymphocyte rec 99.8 5.6E-18 1.9E-22 153.3 17.3 153 119-275 21-173 (229)
120 1m9s_A Internalin B; cell inva 99.8 1.3E-18 4.6E-23 178.9 14.5 195 117-327 21-215 (605)
121 1xeu_A Internalin C; cellular 99.8 1.3E-18 4.4E-23 161.0 9.1 168 116-298 18-185 (263)
122 4ezg_A Putative uncharacterize 99.8 5.7E-18 1.9E-22 149.6 12.8 153 114-274 41-194 (197)
123 4h09_A Hypothetical leucine ri 99.7 1.9E-16 6.4E-21 154.9 22.7 318 110-455 39-356 (379)
124 4ezg_A Putative uncharacterize 99.7 8.8E-18 3E-22 148.3 11.7 153 138-298 41-194 (197)
125 1xeu_A Internalin C; cellular 99.7 1.5E-17 5.3E-22 153.6 12.5 153 112-277 36-188 (263)
126 1w8a_A SLIT protein; signaling 99.7 1.8E-16 6.1E-21 139.2 14.4 139 55-227 1-140 (192)
127 2o6r_A Variable lymphocyte rec 99.7 3.1E-16 1.1E-20 135.8 15.7 139 56-228 1-139 (177)
128 2wfh_A SLIT homolog 2 protein 99.7 4.5E-16 1.5E-20 136.6 15.1 138 54-226 2-139 (193)
129 2ell_A Acidic leucine-rich nuc 99.7 3.3E-16 1.1E-20 134.4 11.9 138 308-450 23-166 (168)
130 2ell_A Acidic leucine-rich nuc 99.7 4.6E-16 1.6E-20 133.5 10.8 135 116-253 23-163 (168)
131 4b8c_D Glucose-repressible alc 99.6 8.3E-17 2.8E-21 169.8 7.0 218 117-346 173-404 (727)
132 4h09_A Hypothetical leucine ri 99.6 1.7E-14 6E-19 140.9 23.0 296 111-433 63-358 (379)
133 2o6r_A Variable lymphocyte rec 99.6 3.1E-15 1.1E-19 129.5 15.2 129 119-250 9-137 (177)
134 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.8E-20 133.5 12.8 126 120-248 11-137 (192)
135 2wfh_A SLIT homolog 2 protein 99.6 2.1E-15 7E-20 132.4 13.8 126 120-249 13-138 (193)
136 1dce_A Protein (RAB geranylger 99.6 5.6E-18 1.9E-22 173.3 -3.1 110 334-450 442-552 (567)
137 1dce_A Protein (RAB geranylger 99.6 3.1E-18 1.1E-22 175.2 -6.6 190 138-350 346-550 (567)
138 2je0_A Acidic leucine-rich nuc 99.6 2.7E-15 9.4E-20 125.9 11.2 128 309-440 17-149 (149)
139 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 7.8E-20 126.4 10.2 127 116-245 16-148 (149)
140 1a9n_A U2A', U2A'; complex (nu 99.6 1.7E-15 5.9E-20 131.0 9.6 136 111-250 13-153 (176)
141 4b8c_D Glucose-repressible alc 99.6 7.5E-16 2.6E-20 162.5 3.9 187 165-368 173-369 (727)
142 1a9n_A U2A', U2A'; complex (nu 99.5 1E-14 3.5E-19 126.1 9.0 134 136-273 14-152 (176)
143 3g39_A Variable lymphocyte rec 99.5 5.2E-14 1.8E-18 120.7 13.1 86 117-202 30-115 (170)
144 2r9u_A Variable lymphocyte rec 99.5 7.3E-14 2.5E-18 120.2 13.7 117 53-203 3-119 (174)
145 3g39_A Variable lymphocyte rec 99.5 2.4E-13 8.3E-18 116.5 12.2 106 120-228 12-117 (170)
146 1ds9_A Outer arm dynein; leuci 99.5 1.2E-15 4E-20 134.8 -3.3 156 281-445 14-186 (198)
147 2r9u_A Variable lymphocyte rec 99.5 5.3E-13 1.8E-17 114.8 12.7 107 120-229 15-121 (174)
148 1ds9_A Outer arm dynein; leuci 99.4 7E-16 2.4E-20 136.2 -9.9 110 136-250 43-153 (198)
149 2ifg_A High affinity nerve gro 99.3 3.4E-12 1.2E-16 123.0 11.3 91 113-204 27-118 (347)
150 3un9_A NLR family member X1; l 99.3 2.2E-13 7.7E-18 131.9 0.4 119 310-429 127-261 (372)
151 3un9_A NLR family member X1; l 99.3 2.6E-13 9E-18 131.4 0.3 162 285-447 72-255 (372)
152 2ifg_A High affinity nerve gro 99.2 4.5E-11 1.5E-15 115.1 11.1 104 121-227 12-117 (347)
153 2ra8_A Uncharacterized protein 98.7 8.6E-09 3E-13 98.8 6.6 198 238-442 108-341 (362)
154 2ra8_A Uncharacterized protein 98.7 1.9E-08 6.7E-13 96.4 8.9 64 332-396 251-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.5 4.5E-08 1.5E-12 84.6 3.9 115 329-445 32-165 (185)
156 1io0_A Tropomodulin; LRR prote 98.4 1.7E-07 5.7E-12 81.0 4.8 89 330-420 62-164 (185)
157 3e4g_A ATP synthase subunit S, 98.1 2.1E-06 7.1E-11 72.3 5.1 83 310-393 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.1 8.2E-07 2.8E-11 74.8 2.2 38 117-154 61-99 (176)
159 3rw6_A Nuclear RNA export fact 98.0 3.4E-07 1.2E-11 83.2 -1.5 64 163-227 168-234 (267)
160 3rw6_A Nuclear RNA export fact 98.0 1.5E-06 5.1E-11 78.9 1.4 81 307-389 168-257 (267)
161 3rfe_A Platelet glycoprotein I 97.7 9.2E-05 3.1E-09 59.4 7.6 66 55-154 1-68 (130)
162 3rfe_A Platelet glycoprotein I 97.6 0.00014 4.8E-09 58.3 6.9 56 387-445 12-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 97.4 0.00026 9E-09 60.7 6.5 83 360-443 72-169 (197)
164 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00032 1.1E-08 60.1 4.9 65 329-393 66-136 (197)
165 2lz0_A Uncharacterized protein 95.1 0.047 1.6E-06 40.9 6.2 48 127-175 6-53 (100)
166 2lz0_A Uncharacterized protein 94.6 0.047 1.6E-06 41.0 5.0 49 392-441 5-53 (100)
No 1
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-47 Score=400.55 Aligned_cols=459 Identities=20% Similarity=0.217 Sum_probs=335.4
Q ss_pred eeeeccccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCC-
Q psy10289 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANP- 82 (497)
Q Consensus 4 ~~~~~~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~- 82 (497)
.|.++++|++||+++|.|+.+.+.+|.++++|+.|+ ...+.....+....... .....++.....+...
T Consensus 52 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--------Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~i~~l~ 121 (606)
T 3t6q_A 52 TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV--------LTANPLIFMAETALSGP--KALKHLFFIQTGISSID 121 (606)
T ss_dssp TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE--------CTTCCCSEECTTTTSSC--TTCCEEECTTSCCSCGG
T ss_pred HhccCccceEEECCCCccceeChhhccCccccCeee--------CCCCcccccChhhhccc--ccccEeeccccCcccCC
Confidence 355666777777777777767667777776666653 11111111111111111 1112333333333332
Q ss_pred -CCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCC--EEeccCCcCccCCcc
Q psy10289 83 -IPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLR--YLNLTHNNITSLLDY 159 (497)
Q Consensus 83 -~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~--~L~l~~n~l~~~~~~ 159 (497)
.++.. ...++.|+++.+.. ..+ ..+.+..+++|++|++++|.++.+.+..|..+++|+ .|++++|+++++.+.
T Consensus 122 ~~~~~~-l~~L~~L~L~~n~l--~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~ 197 (606)
T 3t6q_A 122 FIPLHN-QKTLESLYLGSNHI--SSI-KLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG 197 (606)
T ss_dssp GSCCTT-CTTCCEEECCSSCC--CCC-CCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred cchhcc-CCcccEEECCCCcc--ccc-CcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh
Confidence 11111 12456666655411 111 112333466666666666666666555566666666 666666666655544
Q ss_pred ccCCC---------------------------------------------------CCCcEEeccCCCCccCCcccccCC
Q psy10289 160 NFKGM---------------------------------------------------MNLQELYLDFNKIESIPSSVFMHL 188 (497)
Q Consensus 160 ~~~~l---------------------------------------------------~~L~~L~L~~n~~~~~~~~~~~~l 188 (497)
.|... .+|+.|++++|.++.+++..|+.+
T Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l 277 (606)
T 3t6q_A 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277 (606)
T ss_dssp TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTC
T ss_pred HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccc
Confidence 43321 156677777777777777778888
Q ss_pred cCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc-ccCcccccCCCCccEEE
Q psy10289 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE-NINPMMYSILADLIYLD 267 (497)
Q Consensus 189 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~l~~L~~L~ 267 (497)
++|++|++++|.++.+ |..+..+++|++|++++|.+.++.+..+..+++|+.|++++|.+. .+++..+..+++|++|+
T Consensus 278 ~~L~~L~l~~n~l~~l-p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~ 356 (606)
T 3t6q_A 278 SGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356 (606)
T ss_dssp TTCSEEECTTSCCSCC-CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEE
T ss_pred cCCCEEeccCCccCCC-ChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEE
Confidence 8999999999988876 556788899999999999998888888888999999999999887 56666788899999999
Q ss_pred ccCCCCCccC--hhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccc-ccccCCCCCCEEECcCCC
Q psy10289 268 LGYNQLKYLL--ADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT-TAFTNLTNLIELDISYNK 344 (497)
Q Consensus 268 l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~L~~L~l~~n~ 344 (497)
+++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 9999998765 6778999999999999999988888889999999999999999987654 448899999999999999
Q ss_pred CCccCcccccccccCCCEEEcCCCcCCCcch--hhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCccc
Q psy10289 345 LDRLEVASFDPIENSLRDLKISGNNIQLSDV--KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422 (497)
Q Consensus 345 l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~--~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 422 (497)
+....+..+..++. |++|++++|.++...+ +..+..+++|+.|++++|+++.+++..|..+++|+.|++++|++++.
T Consensus 437 l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 515 (606)
T 3t6q_A 437 LDISSEQLFDGLPA-LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSS 515 (606)
T ss_dssp CBTTCTTTTTTCTT-CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGG
T ss_pred cCCcCHHHHhCCCC-CCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcC
Confidence 99988888888887 9999999999874322 25688899999999999999999888889999999999999999999
Q ss_pred chhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHhhhhccCCCce
Q psy10289 423 HNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSSMGKNAEY 479 (497)
Q Consensus 423 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 479 (497)
.+..+..++.| +|++++|+++++++..+......+.+++++|||.|+|...+...|
T Consensus 516 ~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w 571 (606)
T 3t6q_A 516 SIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEW 571 (606)
T ss_dssp GGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHH
T ss_pred ChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHH
Confidence 99999999999 999999999998887554322233458999999999986544333
No 2
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.4e-46 Score=395.10 Aligned_cols=366 Identities=24% Similarity=0.348 Sum_probs=288.5
Q ss_pred cccCCCC--CcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCc---------cC
Q psy10289 112 IFQQFQH--LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE---------SI 180 (497)
Q Consensus 112 ~~~~~~~--L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---------~~ 180 (497)
.|.+++. |++|++++|.++.+.+..|..+++|++|++++|+++++.+..|.++++|++|++++|... .+
T Consensus 241 ~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i 320 (680)
T 1ziw_A 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320 (680)
T ss_dssp TTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEE
T ss_pred HhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccccccccc
Confidence 4555543 777777777777776666777777777777777777776667777777777777665322 22
Q ss_pred CcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCC--CCccChhhhcCC--ccccEEEcCCCCCcccCccc
Q psy10289 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND--IVEINPEIFKDI--QELKTFKCRSCGLENINPMM 256 (497)
Q Consensus 181 ~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~--i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~ 256 (497)
+...|..+++|++|++++|.++++.+..|.++++|++|++++|. +..++...|..+ +.|+.|++++|.++.+.+..
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~ 400 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh
Confidence 33356677778888888887777777777777888888887775 334444444433 46888888888888888888
Q ss_pred ccCCCCccEEEccCCCCCc-cChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccc--ccccccccCCC
Q psy10289 257 YSILADLIYLDLGYNQLKY-LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLA--KVTTTAFTNLT 333 (497)
Q Consensus 257 ~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~ 333 (497)
+..+++|++|++++|.+.+ ..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+. +..+..+..++
T Consensus 401 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~ 480 (680)
T 1ziw_A 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR 480 (680)
T ss_dssp TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT
T ss_pred hhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC
Confidence 8889999999999998875 34477888999999999999988888888888999999999998876 34556788999
Q ss_pred CCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcc-------hhhHhhcCCCCCEEecCCCcCCcCCcccccCC
Q psy10289 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSD-------VKNVLDKLVKLKALSIADMNYTDIPKGLFKMN 406 (497)
Q Consensus 334 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~-------~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~ 406 (497)
+|++|++++|+++.+++..+..++. |+.|++++|.++... ....+..+++|+.|++++|+++.+|...|.++
T Consensus 481 ~L~~L~Ls~N~l~~i~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 559 (680)
T 1ziw_A 481 NLTILDLSNNNIANINDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDL 559 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTT-CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCEEECCCCCCCcCChhhhccccc-cCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccc
Confidence 9999999999999999888988887 999999999976321 11236788999999999999999999989999
Q ss_pred CcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcc--cCCchhHHHHhhhhhHhhhhc-cCCCce
Q psy10289 407 PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYI--MSEPKNIHKAAKNSFALQSSM-GKNAEY 479 (497)
Q Consensus 407 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~~~~~~~~~~~~n~~~~~~~~-~~~~~~ 479 (497)
++|+.|++++|+++++++..|..+++|+.|++++|+++++++..+. +..+. .+++++|||.|+|.+ .+...|
T Consensus 560 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~l~l~~N~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 560 FELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLT-ELDMRFNPFDCTCESIAWFVNW 634 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCS-EEECTTCCCCBCCCCCSSEECC
T ss_pred cCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccC-EEEccCCCcccCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999887653 33333 358999999999985 554444
No 3
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.7e-45 Score=381.33 Aligned_cols=402 Identities=25% Similarity=0.290 Sum_probs=321.7
Q ss_pred EEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccC
Q psy10289 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTH 150 (497)
Q Consensus 71 ~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 150 (497)
.++|...++..+|. .++..++.++++.+. .....+..|.++++|++|++++|.++.+.+.+|.++++|++|++++
T Consensus 15 ~~~c~~~~l~~ip~--~~~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD--DIPSSTKNIDLSFNP---LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp EEECTTSCCSSCCT--TSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ceEccCCCcccCCC--CCCCCcCEEECCCCC---cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 79999999988884 567899999998872 2333445899999999999999999999999999999999999999
Q ss_pred CcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCC-hhhhcCCCCCCEEeccCCCCCccC
Q psy10289 151 NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA-PRLFLKLSKLKSLDLSYNDIVEIN 229 (497)
Q Consensus 151 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~ 229 (497)
|+++++.+.+|+++++|++|++++|.++.+++..|+++++|++|++++|.+++.. |..|.++++|++|++++|.+.+++
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 9999998999999999999999999999999778999999999999999998643 788999999999999999988776
Q ss_pred hhhhcCCcccc----EEEcCCCCCcccCccc-------------------------------------------------
Q psy10289 230 PEIFKDIQELK----TFKCRSCGLENINPMM------------------------------------------------- 256 (497)
Q Consensus 230 ~~~~~~~~~L~----~L~l~~~~l~~~~~~~------------------------------------------------- 256 (497)
+..++.+.+|+ .+++++|.++.+++..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred hhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccc
Confidence 65444333322 3333333333222111
Q ss_pred --------------------------------------------------------------------------------
Q psy10289 257 -------------------------------------------------------------------------------- 256 (497)
Q Consensus 257 -------------------------------------------------------------------------------- 256 (497)
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~ 329 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPF 329 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSS
T ss_pred cChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcccccCCCCc
Confidence
Q ss_pred ----------------ccCCCCccEEEccCCCCCcc--ChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccC
Q psy10289 257 ----------------YSILADLIYLDLGYNQLKYL--LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318 (497)
Q Consensus 257 ----------------~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (497)
+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.. ..+..+++|++|++++
T Consensus 330 L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~ 408 (606)
T 3vq2_A 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQH 408 (606)
T ss_dssp CCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTT
T ss_pred cceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCC
Confidence 12234444444554444433 1445566666666666666665533 5677788888888888
Q ss_pred Cccccccc-ccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCc
Q psy10289 319 NRLAKVTT-TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD 397 (497)
Q Consensus 319 n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~ 397 (497)
|.+.+..+ ..+..+++|++|++++|.+....+..+..++. |+.|++++|.++....+..+..+++|+.|++++|+++.
T Consensus 409 n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 487 (606)
T 3vq2_A 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ 487 (606)
T ss_dssp SEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred CccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCC-CCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc
Confidence 88887766 57888999999999999998888888888877 99999999998743467788899999999999999999
Q ss_pred CCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHhhhhccCCC
Q psy10289 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSSMGKNA 477 (497)
Q Consensus 398 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 477 (497)
+++..|..+++|+.|++++|+++++.+..+..+++|++|++++|+++.+|+.+..+....+.+++++|+|.|+|.+.+..
T Consensus 488 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~ 567 (606)
T 3vq2_A 488 ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL 567 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHH
T ss_pred cChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHH
Confidence 98888899999999999999999999999999999999999999999999986555543445699999999999876543
Q ss_pred ce
Q psy10289 478 EY 479 (497)
Q Consensus 478 ~~ 479 (497)
.|
T Consensus 568 ~~ 569 (606)
T 3vq2_A 568 QW 569 (606)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-45 Score=392.79 Aligned_cols=392 Identities=21% Similarity=0.197 Sum_probs=298.8
Q ss_pred CCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCC-ccCCCCCCCCCCCCEEeccCCcCccCCccccCCCC-CC
Q psy10289 90 LGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP-AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMM-NL 167 (497)
Q Consensus 90 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L 167 (497)
..++.++++.+ .....++..|.++++|++|++++|.++ .++...|.++++|++|++++|++++..+..+..++ +|
T Consensus 294 ~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L 370 (768)
T 3rgz_A 294 DTLTGLDLSGN---HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASL 370 (768)
T ss_dssp TTCSEEECCSS---EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTC
T ss_pred CcCCEEECcCC---cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCC
Confidence 45666666655 222244556777777777777777766 45444467777777777777777755566666665 77
Q ss_pred cEEeccCCCCccCCcccccC--CcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcC
Q psy10289 168 QELYLDFNKIESIPSSVFMH--LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCR 245 (497)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~--l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~ 245 (497)
++|++++|.+....+..+.. +++|++|++++|.+++..|..+..+++|++|++++|.+.+..+..+.++++|+.|+++
T Consensus 371 ~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~ 450 (768)
T 3rgz_A 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLW 450 (768)
T ss_dssp SEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred cEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECC
Confidence 77777777766422222333 6788999999998887778889999999999999999988888889999999999999
Q ss_pred CCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccc
Q psy10289 246 SCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325 (497)
Q Consensus 246 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 325 (497)
+|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|++.+..
T Consensus 451 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 530 (768)
T 3rgz_A 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530 (768)
T ss_dssp SSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEEC
T ss_pred CCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcC
Confidence 99999888888888999999999999999888899999999999999999999888889999999999999999999888
Q ss_pred cccccCCCCCCEEECcCCCCCccCccc-----------------------------------------------------
Q psy10289 326 TTAFTNLTNLIELDISYNKLDRLEVAS----------------------------------------------------- 352 (497)
Q Consensus 326 ~~~~~~~~~L~~L~l~~n~l~~~~~~~----------------------------------------------------- 352 (497)
+..+..+++|++|++++|++.+..+..
T Consensus 531 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 610 (768)
T 3rgz_A 531 PAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGT
T ss_pred CHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccc
Confidence 888999999999999999876322221
Q ss_pred -----------------ccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCC-cCCcccccCCCcCcEEeC
Q psy10289 353 -----------------FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT-DIPKGLFKMNPHLQFLNL 414 (497)
Q Consensus 353 -----------------~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~-~l~~~~~~~~~~L~~L~L 414 (497)
+..+. +|+.|++++|.++ +.+|..+..+++|+.|++++|+++ .+|. .+..+++|+.|+|
T Consensus 611 ~~~~l~~~~~~g~~~~~~~~l~-~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdL 687 (768)
T 3rgz_A 611 NPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDL 687 (768)
T ss_dssp CCSCTTSCEEEEECCCSCSSSB-CCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEEC
T ss_pred cccccccceecccCchhhhccc-cccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEEC
Confidence 22233 3899999999988 567889999999999999999998 5555 4688999999999
Q ss_pred cCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHh-----hhhccCCCceEEEeccccH
Q psy10289 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFAL-----QSSMGKNAEYAVFIASSSI 488 (497)
Q Consensus 415 s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~-----~~~~~~~~~~~~~~~~~~i 488 (497)
++|++++..|..+..+++|++||+++|++++..|....+...... .+.+|+.=| +|.-....+|.+.....++
T Consensus 688 s~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~-~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPA-KFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp CSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGG-GGCSCTEEESTTSCCCCSCC-------------
T ss_pred CCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHH-HhcCCchhcCCCCcCCCCCccCCCCCCCCcccc
Confidence 999999999999999999999999999999865554433322222 345555332 5666666677666554443
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.5e-44 Score=373.26 Aligned_cols=401 Identities=21% Similarity=0.256 Sum_probs=194.6
Q ss_pred cccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCC
Q psy10289 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQM 88 (497)
Q Consensus 9 ~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~ 88 (497)
+.+++||+++|.|+.+.+.+|.++++|++|+ ...+.....+...+..
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~--------Ls~n~i~~~~~~~~~~------------------------- 79 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLD--------LTRCQIYWIHEDTFQS------------------------- 79 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEE--------CTTCCCCEECTTTTTT-------------------------
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEE--------CCCCccceeChhhccC-------------------------
Confidence 4799999999999999999999999999874 1111111111111111
Q ss_pred CCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCc
Q psy10289 89 DLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168 (497)
Q Consensus 89 ~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 168 (497)
...++.|+++.+ ......+..|.++++|++|++++|.++.+++..|.++++|++|++++|+++++....+.++++|+
T Consensus 80 l~~L~~L~Ls~n---~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 156 (606)
T 3t6q_A 80 QHRLDTLVLTAN---PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLK 156 (606)
T ss_dssp CTTCCEEECTTC---CCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCC
T ss_pred ccccCeeeCCCC---cccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccC
Confidence 113444444443 11112233445555555555555555554444455555555555555555544333333345555
Q ss_pred EEeccCCCCccCCcccccCCcCCc--EEeccCCCCC--------------------------------------------
Q psy10289 169 ELYLDFNKIESIPSSVFMHLSDLR--VLSLAHNRIS-------------------------------------------- 202 (497)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~--~L~l~~n~i~-------------------------------------------- 202 (497)
+|++++|.++.+++..|+.+++|+ .|++++|.++
T Consensus 157 ~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~ 236 (606)
T 3t6q_A 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFE 236 (606)
T ss_dssp EEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCT
T ss_pred EEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhc
Confidence 555555555544444444444444 4444444444
Q ss_pred -------------------------------CCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcc
Q psy10289 203 -------------------------------KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLEN 251 (497)
Q Consensus 203 -------------------------------~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~ 251 (497)
.+.+..|..+++|++|++++|.++.++. .+.++++|+.|++++|.++.
T Consensus 237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTCCCSB
T ss_pred cccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccCCcCc
Confidence 4433334444444444444444444322 23444444444444444444
Q ss_pred cCcccccCCCCccEEEccCCCCCc-cChhhhcCCccCceeeccCCcCCCcC--ccccCCCCCccEEEccCCccccccccc
Q psy10289 252 INPMMYSILADLIYLDLGYNQLKY-LLADELEDLKKLETLLLDGNHFPVIL--EKSFSSQFKLQVLCLKRNRLAKVTTTA 328 (497)
Q Consensus 252 ~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~ 328 (497)
+.+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.++.+..
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 395 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTT
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHH
Confidence 444444444444444444444432 22223444444555555544444433 333444445555555555544444444
Q ss_pred ccCCCCCCEEECcCCCCCccCcc-cccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCc--CC-ccccc
Q psy10289 329 FTNLTNLIELDISYNKLDRLEVA-SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD--IP-KGLFK 404 (497)
Q Consensus 329 ~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~--l~-~~~~~ 404 (497)
+..+++|++|++++|++....+. .+..++. |+.|++++|.++. ..+..+..+++|+.|++++|+++. ++ ...+.
T Consensus 396 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 473 (606)
T 3t6q_A 396 FKECPQLELLDLAFTRLKVKDAQSPFQNLHL-LKVLNLSHSLLDI-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ 473 (606)
T ss_dssp TTTCTTCSEEECTTCCEECCTTCCTTTTCTT-CCEEECTTCCCBT-TCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGG
T ss_pred hcCCccCCeEECCCCcCCCcccchhhhCccc-CCEEECCCCccCC-cCHHHHhCCCCCCEEECCCCCCCccccccchhhc
Confidence 44455555555555544433222 2333333 5555555554431 223344445555555555555443 11 12344
Q ss_pred CCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccC
Q psy10289 405 MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448 (497)
Q Consensus 405 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 448 (497)
.+++|+.|++++|+++++++..|..+++|++|++++|+++++++
T Consensus 474 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 474 TLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp GCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred cCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 45555555555555555555555555555555555555555443
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-44 Score=384.85 Aligned_cols=392 Identities=21% Similarity=0.190 Sum_probs=229.5
Q ss_pred EEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC-----------------
Q psy10289 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG----------------- 133 (497)
Q Consensus 71 ~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~----------------- 133 (497)
.++.....+...++...--..++.|+++.+.. ...++..+.++++|++|++++|.++...
T Consensus 204 ~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKL---SGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280 (768)
T ss_dssp EEECCSSCCCSCCCBCTTCCSCCEEECCSSCC---CSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSE
T ss_pred EEECcCCcCCCCCcccccCCCCCEEECcCCcC---CCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCc
Confidence 34444444443222222224567777766521 2223345566666666666655544221
Q ss_pred -----CCCCCC-CCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCc-cCCcccccCCcCCcEEeccCCCCCCCCh
Q psy10289 134 -----FHPFWG-VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAP 206 (497)
Q Consensus 134 -----~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~l~~n~i~~~~~ 206 (497)
+..+.+ +++|++|++++|++++..+..|.++++|++|++++|.+. .+|...|..+++|++|++++|++++..|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 222222 356666666666666555556666666666666666665 5555555666666666666666553333
Q ss_pred hhhcCC---------------------------CCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccC
Q psy10289 207 RLFLKL---------------------------SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259 (497)
Q Consensus 207 ~~~~~l---------------------------~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 259 (497)
..+..+ ++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~ 440 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc
Confidence 333332 33444444444444444455555666666666666666555556666
Q ss_pred CCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEE
Q psy10289 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELD 339 (497)
Q Consensus 260 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~ 339 (497)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+..+..+++|++|+
T Consensus 441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 520 (768)
T 3rgz_A 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence 66666666666666666666666666666666666666666666666666677777776666655555666666777777
Q ss_pred CcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhh------------------------------------------
Q psy10289 340 ISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN------------------------------------------ 377 (497)
Q Consensus 340 l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~------------------------------------------ 377 (497)
+++|++.+..+..+..++. |+.|++++|.++ +.+|.
T Consensus 521 L~~N~l~~~~p~~l~~l~~-L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRS-LIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598 (768)
T ss_dssp CCSSCCEEECCGGGGGCTT-CCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTT
T ss_pred CCCCcccCcCCHHHcCCCC-CCEEECCCCccC-CcCChHHhcccchhhhhcccccccccccccccccccccccccccccc
Confidence 7777666655666666655 777777776654 11111
Q ss_pred ----------------------------HhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhcc
Q psy10289 378 ----------------------------VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429 (497)
Q Consensus 378 ----------------------------~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 429 (497)
.+..+++|+.|++++|+++...+..+..+++|+.|+|++|++++..|..++.
T Consensus 599 ~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~ 678 (768)
T 3rgz_A 599 IRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGD 678 (768)
T ss_dssp CCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhC
Confidence 1223456677777777776333333567777777777777777777777777
Q ss_pred CCCCCEEECCCCccccc-cCCCcccCCchhHHHHhhhhhH
Q psy10289 430 NIKLTHLDLSRNKFKGF-DEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 430 ~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
+++|+.||+++|++++. |..+..+..+. .+++++|+++
T Consensus 679 L~~L~~LdLs~N~l~g~ip~~l~~l~~L~-~L~ls~N~l~ 717 (768)
T 3rgz_A 679 LRGLNILDLSSNKLDGRIPQAMSALTMLT-EIDLSNNNLS 717 (768)
T ss_dssp CTTCCEEECCSSCCEECCCGGGGGCCCCS-EEECCSSEEE
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCC-EEECcCCccc
Confidence 77777777777777754 33333344333 3477777776
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-42 Score=367.29 Aligned_cols=446 Identities=20% Similarity=0.240 Sum_probs=230.3
Q ss_pred cccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCCC-CCC
Q psy10289 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIP-IGQ 87 (497)
Q Consensus 9 ~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~-~~~ 87 (497)
+++++||+++|.|+.+.+..|.++++|+.|+ ...+.....+........ ....++.....+...++ ...
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--------Ls~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~l~~~~~~ 94 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLD--------VGFNTISKLEPELCQKLP--MLKVLNLQHNELSQLSDKTFA 94 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEE--------CCSSCCCCCCTTHHHHCT--TCCEEECCSSCCCCCCTTTTT
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEE--------CCCCccCccCHHHHhccc--CcCEEECCCCccCccChhhhc
Confidence 4566677777766666666666666666653 112222222211111111 11123333333333332 011
Q ss_pred CCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccC--CCC
Q psy10289 88 MDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK--GMM 165 (497)
Q Consensus 88 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~ 165 (497)
--..++.++++.+.. ....+..|.++++|++|++++|.++.+.+..|.++++|++|++++|+++++.+..+. .++
T Consensus 95 ~l~~L~~L~L~~n~l---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 171 (680)
T 1ziw_A 95 FCTNLTELHLMSNSI---QKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171 (680)
T ss_dssp TCTTCSEEECCSSCC---CCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTC
T ss_pred cCCCCCEEECCCCcc---CccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccc
Confidence 123566666665521 122223566667777777777766666666666666666666666666665554432 335
Q ss_pred CCcEEeccCCCCccCCccc---------------------------------------------------ccCCcC--Cc
Q psy10289 166 NLQELYLDFNKIESIPSSV---------------------------------------------------FMHLSD--LR 192 (497)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~---------------------------------------------------~~~l~~--L~ 192 (497)
+|++|++++|.++.+++.. |.+++. |+
T Consensus 172 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~ 251 (680)
T 1ziw_A 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLT 251 (680)
T ss_dssp EESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCC
T ss_pred cccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCC
Confidence 5666666665555444433 333322 66
Q ss_pred EEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc---------ccCcccccCCCCc
Q psy10289 193 VLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE---------NINPMMYSILADL 263 (497)
Q Consensus 193 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~---------~~~~~~~~~l~~L 263 (497)
+|++++|+++.+.+..|..+++|++|++++|.+.++.+..|.++++|+.|+++++... .+....+..+++|
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L 331 (680)
T 1ziw_A 252 MLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331 (680)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTC
T ss_pred EEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCC
Confidence 6666666666555555666666666666666665555444444444444444432211 1111234445555
Q ss_pred cEEEccCCCCCccChhhhcCCccCceeeccC----------------------------CcCCCcCccccCCCCCccEEE
Q psy10289 264 IYLDLGYNQLKYLLADELEDLKKLETLLLDG----------------------------NHFPVILEKSFSSQFKLQVLC 315 (497)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~----------------------------n~~~~~~~~~~~~~~~L~~L~ 315 (497)
++|++++|.+.+..+..|.++++|++|++++ |.+.++.+..+..+++|++|+
T Consensus 332 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411 (680)
T ss_dssp CEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence 5555555555555555555554444444433 333333444555556666666
Q ss_pred ccCCcccc-cccccccCCCCCCEEECcCCCCCccCccccccccc-------------------------CCCEEEcCCCc
Q psy10289 316 LKRNRLAK-VTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN-------------------------SLRDLKISGNN 369 (497)
Q Consensus 316 l~~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~-------------------------~L~~L~ls~n~ 369 (497)
+++|.+.+ +++..+.++++|++|++++|++..+.+..+..++. +|+.|++++|.
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~ 491 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN 491 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCC
Confidence 66666543 33344555566666666665554444333333332 15555555554
Q ss_pred CCCcchhhHhhcCCCCCEEecCCCcCCcCCc--------ccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCC
Q psy10289 370 IQLSDVKNVLDKLVKLKALSIADMNYTDIPK--------GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441 (497)
Q Consensus 370 i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~--------~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 441 (497)
++. ..+..+..+++|+.|++++|+++.++. ..|..+++|+.|++++|+++.+++..|.++++|++|++++|
T Consensus 492 l~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 492 IAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp CCC-CCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCc-CChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCC
Confidence 441 112334455555555555555554322 12455566666666666666666666677777777777777
Q ss_pred ccccccCCCcccCCchhHHHHhhhhhH
Q psy10289 442 KFKGFDEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 442 ~l~~~~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
+++.+|+..+......+.+++++|.++
T Consensus 571 ~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 571 NLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred CCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 777777665532222333466666554
No 8
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.2e-41 Score=342.98 Aligned_cols=383 Identities=20% Similarity=0.288 Sum_probs=324.9
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCC-ccC
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP-AIG 133 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~~~ 133 (497)
.||..|.|... .+.|...++..+|. ++..+++|+++.+. .....+..|.++++|++|++++|.+. .++
T Consensus 3 p~~~~c~~~~~-----~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~ 71 (455)
T 3v47_A 3 PGTSECSVIGY-----NAICINRGLHQVPE---LPAHVNYVDLSLNS---IAELNETSFSRLQDLQFLKVEQQTPGLVIR 71 (455)
T ss_dssp ----CCEEETT-----EEECCSSCCSSCCC---CCTTCCEEECCSSC---CCEECTTTTSSCTTCCEEECCCCSTTCEEC
T ss_pred CccceeEEEcc-----ccCcCCCCcccCCC---CCCccCEEEecCCc---cCcCChhHhccCccccEEECcCCcccceEC
Confidence 47888888643 68999999888874 67899999998873 23334568999999999999999986 777
Q ss_pred CCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCcc--CCcccccCCcCCcEEeccCCCCCCCChhh-hc
Q psy10289 134 FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES--IPSSVFMHLSDLRVLSLAHNRISKLAPRL-FL 210 (497)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~~~-~~ 210 (497)
+..|.++++|++|++++|+++++.+..|.++++|++|++++|.++. .+...|..+++|++|++++|.++++.+.. +.
T Consensus 72 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 151 (455)
T 3v47_A 72 NNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFL 151 (455)
T ss_dssp TTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGG
T ss_pred cccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccC
Confidence 8889999999999999999999988999999999999999999986 33345889999999999999999886655 88
Q ss_pred CCCCCCEEeccCCCCCccChhhhcCC--ccccEEEcCCCCCcccCcccc--------cCCCCccEEEccCCCCCccChhh
Q psy10289 211 KLSKLKSLDLSYNDIVEINPEIFKDI--QELKTFKCRSCGLENINPMMY--------SILADLIYLDLGYNQLKYLLADE 280 (497)
Q Consensus 211 ~l~~L~~L~l~~n~i~~~~~~~~~~~--~~L~~L~l~~~~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~ 280 (497)
++++|++|++++|.+.++.+..+..+ .+|+.|++++|.+..+++..+ ..+++|++|++++|.+.+..+..
T Consensus 152 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 231 (455)
T 3v47_A 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKR 231 (455)
T ss_dssp GCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHH
T ss_pred CCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhh
Confidence 99999999999999999888777765 689999999999998765432 35689999999999999877776
Q ss_pred hcCC---ccCceeeccCCcCCCcC----------ccccC--CCCCccEEEccCCcccccccccccCCCCCCEEECcCCCC
Q psy10289 281 LEDL---KKLETLLLDGNHFPVIL----------EKSFS--SQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345 (497)
Q Consensus 281 ~~~l---~~L~~L~l~~n~~~~~~----------~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 345 (497)
+... ++++.|++++|...+.. ...+. ..++|++|++++|.+.++.+..+..+++|++|++++|++
T Consensus 232 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 311 (455)
T 3v47_A 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311 (455)
T ss_dssp HHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred hhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcc
Confidence 6544 88999999988544321 11122 236899999999999999888899999999999999999
Q ss_pred CccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchh
Q psy10289 346 DRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL 425 (497)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 425 (497)
.++.+..+..++. |+.|++++|.++ ...+..+..+++|+.|++++|+++.+++..|..+++|+.|++++|+++++++.
T Consensus 312 ~~~~~~~~~~l~~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 312 NKIDDNAFWGLTH-LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CEECTTTTTTCTT-CCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccChhHhcCccc-CCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 9998889988887 999999999986 33467788999999999999999999877889999999999999999999998
Q ss_pred hhccCCCCCEEECCCCccccccCCC
Q psy10289 426 LYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 426 ~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
.+..+++|++|++++|++++-.+..
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred HhccCCcccEEEccCCCcccCCCcc
Confidence 8999999999999999999876653
No 9
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1e-41 Score=358.21 Aligned_cols=415 Identities=23% Similarity=0.258 Sum_probs=319.5
Q ss_pred CCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCC
Q psy10289 57 PYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHP 136 (497)
Q Consensus 57 p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~ 136 (497)
...|.|.... ..++|...++..+| ..+|.+++.|+++.+. .....+.+|.++++|++|++++|.|+.+++++
T Consensus 24 ~~~c~~~~~~---~~~~c~~~~l~~vP--~~lp~~~~~LdLs~N~---i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~ 95 (635)
T 4g8a_A 24 WEPCVEVVPN---ITYQCMELNFYKIP--DNLPFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA 95 (635)
T ss_dssp -CCSEEEETT---TEEECTTSCCSSCC--SSSCTTCCEEECTTSC---CCEECTTTTTTCTTCCEEECTTCCCCEECTTT
T ss_pred CCCccccCCC---CEEECCCCCcCccC--CCCCcCCCEEEeeCCC---CCCCCHHHHhCCCCCCEEECCCCcCCCcChhH
Confidence 3446665433 26899999999988 4788999999998872 22233458999999999999999999999999
Q ss_pred CCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCC-ChhhhcCCCCC
Q psy10289 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFLKLSKL 215 (497)
Q Consensus 137 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L 215 (497)
|.++++|++|+|++|+++++++.+|.++++|++|++++|.++.+++..|+++++|++|++++|.++.+ .+..+..+++|
T Consensus 96 f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 96 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred hcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 99999999999999999999999999999999999999999999998899999999999999999865 35778889999
Q ss_pred CEEeccCCCCCccChhhhcCCcccc----EEEcCCCCCcccCcc------------------------------------
Q psy10289 216 KSLDLSYNDIVEINPEIFKDIQELK----TFKCRSCGLENINPM------------------------------------ 255 (497)
Q Consensus 216 ~~L~l~~n~i~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~------------------------------------ 255 (497)
++|++++|.+.++.+..+..+.+++ .++++.|.+..+++.
T Consensus 176 ~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~ 255 (635)
T 4g8a_A 176 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 255 (635)
T ss_dssp CEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEE
T ss_pred hhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccc
Confidence 9999999999887766554333221 233333322211110
Q ss_pred -------------------------------------------------------------------cccCCCCccEEEc
Q psy10289 256 -------------------------------------------------------------------MYSILADLIYLDL 268 (497)
Q Consensus 256 -------------------------------------------------------------------~~~~l~~L~~L~l 268 (497)
.+.....++.|++
T Consensus 256 l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l 335 (635)
T 4g8a_A 256 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLEL 335 (635)
T ss_dssp EEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhc
Confidence 0111233444444
Q ss_pred cCCCCCccChh-------------------hhcCCccCceeeccCCcCCCc-------------------------Cccc
Q psy10289 269 GYNQLKYLLAD-------------------ELEDLKKLETLLLDGNHFPVI-------------------------LEKS 304 (497)
Q Consensus 269 ~~n~l~~~~~~-------------------~~~~l~~L~~L~l~~n~~~~~-------------------------~~~~ 304 (497)
.++.+...... ....+++|+.++++.|.+... .+..
T Consensus 336 ~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 336 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp ESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred ccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccccccc
Confidence 44433222111 122456677777776655322 1223
Q ss_pred cCCCCCccEEEccCCccccc-ccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCC
Q psy10289 305 FSSQFKLQVLCLKRNRLAKV-TTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLV 383 (497)
Q Consensus 305 ~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~ 383 (497)
+..+++|+.++++++..... ....+..+++++.++++.|.+....+..+...+. ++.|++++|.+.....+..+..++
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~-L~~L~Ls~N~~~~~~~~~~~~~l~ 494 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELR 494 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTT-CCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccccccchhhhhccccccccccccccccccccccccccccccccccccccchh-hhhhhhhhcccccccCchhhhhcc
Confidence 45567777778777665543 3356788899999999999999888888888776 999999999865444567788999
Q ss_pred CCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcc-cCCchhHHHH
Q psy10289 384 KLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYI-MSEPKNIHKA 462 (497)
Q Consensus 384 ~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~~~~ 462 (497)
+|+.|++++|+++.+++..|.++++|++|+|++|+++++++..|..+++|++||+++|+++++++..+. +....+.+++
T Consensus 495 ~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L 574 (635)
T 4g8a_A 495 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 574 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred ccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence 999999999999999998899999999999999999999999999999999999999999999887664 3233444699
Q ss_pred hhhhhHhhhhccCCCceE
Q psy10289 463 AKNSFALQSSMGKNAEYA 480 (497)
Q Consensus 463 ~~n~~~~~~~~~~~~~~~ 480 (497)
++|||+|+|.+.+...|.
T Consensus 575 ~~Np~~C~C~~~~~~~wl 592 (635)
T 4g8a_A 575 TQNDFACTCEHQSFLQWI 592 (635)
T ss_dssp TTCCBCCSGGGHHHHHHH
T ss_pred eCCCCcccCCcHHHHHHH
Confidence 999999999988766553
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-43 Score=378.74 Aligned_cols=427 Identities=21% Similarity=0.249 Sum_probs=299.5
Q ss_pred ccccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCC
Q psy10289 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQ 87 (497)
Q Consensus 8 ~~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~ 87 (497)
.++|++||||+|.|+.+.+..|.++++|++|+ +..+......+ +..+..
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~Ld-------Ls~n~~~~~i~------------------------~~~f~~ 71 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLE-------LGSQYTPLTID------------------------KEAFRN 71 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEE-------ECTTCCCCEEC------------------------TTTTSS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEe-------CCCCCCccccC------------------------HHHhcC
Confidence 47899999999999999999999999998774 10000000000 001112
Q ss_pred CCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC--CCCCCCCCCCCEEeccCCcCccCCc-cccCCC
Q psy10289 88 MDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG--FHPFWGVPSLRYLNLTHNNITSLLD-YNFKGM 164 (497)
Q Consensus 88 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l 164 (497)
+ ..++.|+++.+ ......+..|.++++|++|++++|.++... ...|.++++|++|++++|.++++.+ ..|+++
T Consensus 72 L-~~L~~L~Ls~N---~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 72 L-PNLRILDLGSS---KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp C-TTCCEEECTTC---CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred C-CCCCEEECCCC---cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 2 26788888776 223334568889999999999999887632 3348888999999999998887754 468889
Q ss_pred CCCcEEeccCCCCccCCcccccCC--cCCcEEeccCCCCCCCChhhhcCCCC------CCEEeccCCCCCccChhh----
Q psy10289 165 MNLQELYLDFNKIESIPSSVFMHL--SDLRVLSLAHNRISKLAPRLFLKLSK------LKSLDLSYNDIVEINPEI---- 232 (497)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~------L~~L~l~~n~i~~~~~~~---- 232 (497)
++|++|++++|.+..+.+..|..+ ++|+.|++++|.+....+..+..+.+ |++|++++|.+....+..
T Consensus 148 ~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 227 (844)
T 3j0a_A 148 NSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA 227 (844)
T ss_dssp SSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT
T ss_pred CCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhh
Confidence 999999999998887776667666 78999999999888766665555554 999999999765432222
Q ss_pred --------------------------------hcC--CccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccCh
Q psy10289 233 --------------------------------FKD--IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA 278 (497)
Q Consensus 233 --------------------------------~~~--~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 278 (497)
|.+ .++|+.|++++|.+..+.+..+..+++|+.|++++|.+.+..+
T Consensus 228 l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 228 ISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp SCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred cCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 222 2679999999999999999999999999999999999999989
Q ss_pred hhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcc-------
Q psy10289 279 DELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVA------- 351 (497)
Q Consensus 279 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~------- 351 (497)
.+|.++++|++|++++|.+.+..+..|..+++|++|++++|.+..+++..|..+++|++|++++|.++.++..
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~ 387 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEE
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhc
Confidence 9999999999999999999998888999999999999999999999988899999999999999987764310
Q ss_pred -------c--------------------------ccccccCCCEEEcCCCcCCCcchh----------------------
Q psy10289 352 -------S--------------------------FDPIENSLRDLKISGNNIQLSDVK---------------------- 376 (497)
Q Consensus 352 -------~--------------------------~~~~~~~L~~L~ls~n~i~~~~~~---------------------- 376 (497)
. +..++. |+.|++++|.++.....
T Consensus 388 l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ 466 (844)
T 3j0a_A 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPH-LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466 (844)
T ss_dssp EESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTT-CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSS
T ss_pred cCCCCcccccccccccceeecccCccccCchhhhhhcCCc-cceeeCCCCcccccccccccccCCccccccCCCCccccc
Confidence 0 012222 55555555554311111
Q ss_pred -------hHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCC
Q psy10289 377 -------NVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEK 449 (497)
Q Consensus 377 -------~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 449 (497)
..+..+++|+.|++++|+++.+++..|..+++|+.|+|++|+++++++..+. ++|+.|++++|+++++++.
T Consensus 467 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~ 544 (844)
T 3j0a_A 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPD 544 (844)
T ss_dssp CCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSC
T ss_pred cccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChh
Confidence 1223334444444444444444444444445555555555555554444332 4455555555555554444
Q ss_pred CcccCCchhHHHHhhhhhHhhhhccC
Q psy10289 450 SYIMSEPKNIHKAAKNSFALQSSMGK 475 (497)
Q Consensus 450 ~~~~~~~~~~~~~~~n~~~~~~~~~~ 475 (497)
.+. .+ ..+++++|||.|+|.+.+
T Consensus 545 ~~~--~L-~~l~l~~Np~~C~c~~~~ 567 (844)
T 3j0a_A 545 VFV--SL-SVLDITHNKFICECELST 567 (844)
T ss_dssp CCS--SC-CEEEEEEECCCCSSSCCS
T ss_pred HhC--Cc-CEEEecCCCcccccccHH
Confidence 332 22 235889999999998654
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.4e-41 Score=347.14 Aligned_cols=395 Identities=23% Similarity=0.264 Sum_probs=314.3
Q ss_pred EEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccC
Q psy10289 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTH 150 (497)
Q Consensus 71 ~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 150 (497)
.+.|...++..+|. .++..++.++++.+. .....+..|.++++|++|++++|.++.+++.+|.++++|++|++++
T Consensus 11 ~~~c~~~~l~~ip~--~l~~~l~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 85 (570)
T 2z63_A 11 TYQCMELNFYKIPD--NLPFSTKNLDLSFNP---LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG 85 (570)
T ss_dssp EEECCSSCCSSCCS--SSCSSCCEEECCSCC---CCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred EEEeCCCCccccCC--CccccccEEEccCCc---cCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcC
Confidence 68999988888874 677889999998873 2223345899999999999999999999999999999999999999
Q ss_pred CcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCC-ChhhhcCCCCCCEEeccCCCCCccC
Q psy10289 151 NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFLKLSKLKSLDLSYNDIVEIN 229 (497)
Q Consensus 151 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~ 229 (497)
|+++.+.+.+|.++++|++|++++|.++.+++..|+++++|++|++++|.++.+ .|..|.++++|++|++++|.+.+++
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 999999889999999999999999999999887789999999999999999874 3788999999999999999998887
Q ss_pred hhhhcCCccc----cEEEcCCCCCcccCcccc------------------------------------------------
Q psy10289 230 PEIFKDIQEL----KTFKCRSCGLENINPMMY------------------------------------------------ 257 (497)
Q Consensus 230 ~~~~~~~~~L----~~L~l~~~~l~~~~~~~~------------------------------------------------ 257 (497)
+..++.+++| +.+++++|.++.+++..+
T Consensus 166 ~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~ 245 (570)
T 2z63_A 166 CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245 (570)
T ss_dssp GGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEE
T ss_pred HHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhh
Confidence 7766666666 666666665554433221
Q ss_pred ---------------------------------cCCCCccEEEccCCCCCcc----------------------Chhhh-
Q psy10289 258 ---------------------------------SILADLIYLDLGYNQLKYL----------------------LADEL- 281 (497)
Q Consensus 258 ---------------------------------~~l~~L~~L~l~~n~l~~~----------------------~~~~~- 281 (497)
..+++|++|++++|.+.++ +...+
T Consensus 246 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~ 325 (570)
T 2z63_A 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLK 325 (570)
T ss_dssp CCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCS
T ss_pred cchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCccccc
Confidence 2223444444444333221 11111
Q ss_pred ------------------cCCccCceeeccCCcCCCcC--ccccCCCCCccEEEccCCcccccccccccCCCCCCEEECc
Q psy10289 282 ------------------EDLKKLETLLLDGNHFPVIL--EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341 (497)
Q Consensus 282 ------------------~~l~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~ 341 (497)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.++++. +..+++|++|+++
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~ 404 (570)
T 2z63_A 326 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQ 404 (570)
T ss_dssp SCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECT
T ss_pred ccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEcc
Confidence 45678888999988887654 55677889999999999999888776 8889999999999
Q ss_pred CCCCCccCc-ccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCC--cCCcccccCCCcCcEEeCcCCC
Q psy10289 342 YNKLDRLEV-ASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT--DIPKGLFKMNPHLQFLNLSGNN 418 (497)
Q Consensus 342 ~n~l~~~~~-~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~--~l~~~~~~~~~~L~~L~Ls~n~ 418 (497)
+|.+....+ ..+..++. |+.|++++|.+. ...+..+..+++|+.|++++|.++ .+|. .|..+++|+.|++++|+
T Consensus 405 ~n~l~~~~~~~~~~~l~~-L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~-~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 405 HSNLKQMSEFSVFLSLRN-LIYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPD-IFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp TSEEESCTTSCTTTTCTT-CCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECS-CCTTCTTCCEEECTTSC
T ss_pred CCccccccchhhhhcCCC-CCEEeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchh-hhhcccCCCEEECCCCc
Confidence 998887654 45667766 999999999876 344667888999999999999886 4664 46888999999999999
Q ss_pred CcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHhhhhcc
Q psy10289 419 LQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSSMG 474 (497)
Q Consensus 419 l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~ 474 (497)
++++.+..|..+++|++|++++|+++++++..+......+.+++++|+++|+|...
T Consensus 482 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 482 LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99998888999999999999999999998776543333334588999999888654
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.5e-41 Score=350.52 Aligned_cols=402 Identities=20% Similarity=0.189 Sum_probs=320.8
Q ss_pred cccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCCC-CCC
Q psy10289 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIP-IGQ 87 (497)
Q Consensus 9 ~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~-~~~ 87 (497)
++|++||+++|.++.+.+..|+++++|+.|+ .....+...++ ...
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~----------------------------------Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLD----------------------------------LSRCEIETIEDKAWH 77 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEE----------------------------------CTTCCCCEECTTTTT
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEe----------------------------------CCCCcccccCHHHhh
Confidence 6799999999999999999999999988763 11111111111 011
Q ss_pred CCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCC-ccccCCCCC
Q psy10289 88 MDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLL-DYNFKGMMN 166 (497)
Q Consensus 88 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 166 (497)
--..++.|+++.+ ......+..|.++++|++|++++|.++.+++..|.++++|++|++++|+++++. |..|.++++
T Consensus 78 ~l~~L~~L~Ls~n---~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~ 154 (606)
T 3vq2_A 78 GLHHLSNLILTGN---PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154 (606)
T ss_dssp TCTTCCEEECTTC---CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTT
T ss_pred chhhcCEeECCCC---cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCC
Confidence 1236889998877 223334568999999999999999999998888999999999999999998743 778999999
Q ss_pred CcEEeccCCCCccCCcccccCCcCCc----EEeccCCCCCCCChhhhc--------------------------------
Q psy10289 167 LQELYLDFNKIESIPSSVFMHLSDLR----VLSLAHNRISKLAPRLFL-------------------------------- 210 (497)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~----~L~l~~n~i~~~~~~~~~-------------------------------- 210 (497)
|++|++++|.++.+++..|+.+.+|+ +|++++|.++.+.+..+.
T Consensus 155 L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l 234 (606)
T 3vq2_A 155 LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234 (606)
T ss_dssp CCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEE
T ss_pred CCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccc
Confidence 99999999999998887777776665 899999988765443322
Q ss_pred ----------------------------------------------------------------------CCCCCCEEec
Q psy10289 211 ----------------------------------------------------------------------KLSKLKSLDL 220 (497)
Q Consensus 211 ----------------------------------------------------------------------~l~~L~~L~l 220 (497)
.+++|++|++
T Consensus 235 ~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l 314 (606)
T 3vq2_A 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSI 314 (606)
T ss_dssp EEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEE
T ss_pred cccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEc
Confidence 2223444444
Q ss_pred cCCCCCccC-------------------hhhhcCCccccEEEcCCCCCcccC--cccccCCCCccEEEccCCCCCccChh
Q psy10289 221 SYNDIVEIN-------------------PEIFKDIQELKTFKCRSCGLENIN--PMMYSILADLIYLDLGYNQLKYLLAD 279 (497)
Q Consensus 221 ~~n~i~~~~-------------------~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~ 279 (497)
++|.+..++ ...+..+++|+.|++++|.++.+. +..+..+++|++|++++|.+.+.. .
T Consensus 315 ~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~ 393 (606)
T 3vq2_A 315 IRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-A 393 (606)
T ss_dssp ESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-C
T ss_pred ccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-h
Confidence 444443332 112334566777777777777653 567788999999999999988755 7
Q ss_pred hhcCCccCceeeccCCcCCCcCc-cccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCc-cCcccccccc
Q psy10289 280 ELEDLKKLETLLLDGNHFPVILE-KSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR-LEVASFDPIE 357 (497)
Q Consensus 280 ~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~ 357 (497)
.+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 88999999999999999998877 678899999999999999999888889999999999999999987 4677788887
Q ss_pred cCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCC-CCCEE
Q psy10289 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI-KLTHL 436 (497)
Q Consensus 358 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~-~L~~L 436 (497)
. |+.|++++|.++ ...+..+..+++|+.|++++|+++.+++..|..+++|+.|++++|+++.+++. +..++ +|++|
T Consensus 474 ~-L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l 550 (606)
T 3vq2_A 474 N-LTFLDLSKCQLE-QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFF 550 (606)
T ss_dssp T-CCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEE
T ss_pred C-CCEEECCCCcCC-ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEE
Confidence 7 999999999987 34467788999999999999999999777789999999999999999988876 77776 69999
Q ss_pred ECCCCccccccCCCc
Q psy10289 437 DLSRNKFKGFDEKSY 451 (497)
Q Consensus 437 ~l~~n~l~~~~~~~~ 451 (497)
++++|++.+-.+..+
T Consensus 551 ~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 551 NLTNNSVACICEHQK 565 (606)
T ss_dssp ECCSCCCCCSSTTHH
T ss_pred EccCCCcccCCccHH
Confidence 999999998666543
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.7e-42 Score=352.83 Aligned_cols=391 Identities=22% Similarity=0.249 Sum_probs=262.9
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCC
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGF 134 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 134 (497)
.||..|.|. |...++..+|. .++..++.++++.+. .....+..|.++++|++|++++|.++.+.+
T Consensus 3 ~C~~~~~c~----------~~~~~l~~ip~--~~~~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 67 (549)
T 2z81_A 3 SCDASGVCD----------GRSRSFTSIPS--GLTAAMKSLDLSFNK---ITYIGHGDLRACANLQVLILKSSRINTIEG 67 (549)
T ss_dssp EECTTSEEE----------CTTSCCSSCCS--CCCTTCCEEECCSSC---CCEECSSTTSSCTTCCEEECTTSCCCEECT
T ss_pred cCCCCceEE----------CCCCccccccc--cCCCCccEEECcCCc---cCccChhhhhcCCcccEEECCCCCcCccCh
Confidence 477776664 34455666653 455789999998872 223335679999999999999999999998
Q ss_pred CCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCC-cccccCCcCCcEEeccCCC-CCCCChhhhcCC
Q psy10289 135 HPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIP-SSVFMHLSDLRVLSLAHNR-ISKLAPRLFLKL 212 (497)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l 212 (497)
.+|.++++|++|++++|+++++.+..|+++++|++|++++|.++.++ +..|+++++|++|++++|. +..+.+..|.++
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 99999999999999999999998888999999999999999998653 3457899999999999998 566655678889
Q ss_pred CCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCC-------------------
Q psy10289 213 SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL------------------- 273 (497)
Q Consensus 213 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l------------------- 273 (497)
++|++|++++|.+.+..+..+..+++|+.|++++|.+..++...+..+++|++|++++|.+
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999988877666666655555555544444333322222333333333333333
Q ss_pred --------------------------------------------------------------------------------
Q psy10289 274 -------------------------------------------------------------------------------- 273 (497)
Q Consensus 274 -------------------------------------------------------------------------------- 273 (497)
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence
Q ss_pred ---------------CccChhhhcCCccCceeeccCCcCCCcCc---cccCCCCCccEEEccCCccccccc--ccccCCC
Q psy10289 274 ---------------KYLLADELEDLKKLETLLLDGNHFPVILE---KSFSSQFKLQVLCLKRNRLAKVTT--TAFTNLT 333 (497)
Q Consensus 274 ---------------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~ 333 (497)
..++...+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++++++ ..+..++
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 32222222345555555555555554332 124445556666666655555432 3355556
Q ss_pred CCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEe
Q psy10289 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLN 413 (497)
Q Consensus 334 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~ 413 (497)
+|++|++++|+++.++. .+..++. |++|++++|.++ .++..+ .++|+.|++++|+++.++ ..+++|++|+
T Consensus 388 ~L~~L~Ls~N~l~~lp~-~~~~~~~-L~~L~Ls~N~l~--~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPD-SCQWPEK-MRFLNLSSTGIR--VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTCCCCCCCS-CCCCCTT-CCEEECTTSCCS--CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEE
T ss_pred CCCEEECCCCCCccCCh-hhccccc-ccEEECCCCCcc--cccchh--cCCceEEECCCCChhhhc----ccCChhcEEE
Confidence 66666666665554432 2333333 666666666554 122111 145666666666655543 3678999999
Q ss_pred CcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHhhhh
Q psy10289 414 LSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSS 472 (497)
Q Consensus 414 Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 472 (497)
+++|+++.++.. ..+++|++|++++|+++++++..+......+.+++++|+|.|+|.
T Consensus 458 Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 458 ISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999988763 458999999999999999988755433333445899999999987
No 14
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.9e-40 Score=332.09 Aligned_cols=334 Identities=24% Similarity=0.367 Sum_probs=268.0
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCC
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGF 134 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 134 (497)
.||..|.|.... ..+.|...++..+|. .++ +++++|++++|.++.+.+
T Consensus 2 ~Cp~~C~C~~~~---~~v~c~~~~l~~ip~--~~~---------------------------~~l~~L~L~~n~l~~~~~ 49 (477)
T 2id5_A 2 GCPPRCECSAQD---RAVLCHRKRFVAVPE--GIP---------------------------TETRLLDLGKNRIKTLNQ 49 (477)
T ss_dssp CCSTTCEEETTT---TEEECCSCCCSSCCS--CCC---------------------------TTCSEEECCSSCCCEECT
T ss_pred cccCCCeECCCC---CEEEeCCCCcCcCCC--CCC---------------------------CCCcEEECCCCccceECH
Confidence 699999997542 268998887776652 111 467788888888888877
Q ss_pred CCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCC
Q psy10289 135 HPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214 (497)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 214 (497)
..|.++++|++|++++|.++++.+.+|.++++|++|++++|.++.+++..|.++++|++|++++|++..+.+..|..+++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 78888888888888888888887788888888888888888888888777888888888888888888777777888888
Q ss_pred CCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccC
Q psy10289 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294 (497)
Q Consensus 215 L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 294 (497)
|++|++++|.+..+.+..|.++++|+.|++++|.++.+++..+..+++|+.|++++|.+.+..+..|..+++|+.|++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 209 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEEC
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCC
Confidence 88888888888888777788888888888888888888777778888888888888888877777788888888888888
Q ss_pred CcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcc
Q psy10289 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSD 374 (497)
Q Consensus 295 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~ 374 (497)
|...+..+.......+|++|++++|.++.++...+..+++|++|++++|.++.++...+..++. |+.|++++|.++. .
T Consensus 210 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~-~ 287 (477)
T 2id5_A 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR-LQEIQLVGGQLAV-V 287 (477)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTT-CCEEECCSSCCSE-E
T ss_pred CccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccccc-CCEEECCCCccce-E
Confidence 7765555544445558888888888888887777888888888888888888888877877776 8888888888763 3
Q ss_pred hhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCccc
Q psy10289 375 VKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422 (497)
Q Consensus 375 ~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 422 (497)
.+..+..+++|+.|++++|+++.++...|..+++|+.|++++|++...
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 356677888888888888888888888888888888888888887754
No 15
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-40 Score=336.32 Aligned_cols=354 Identities=20% Similarity=0.256 Sum_probs=304.5
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCc-cCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEe
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNIT-SLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 195 (497)
++|++|++++|.++.+.+..|.++++|++|++++|.+. .+.+..|.++++|++|++++|.++.+++..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999998899999999999999999987 56678899999999999999999998888899999999999
Q ss_pred ccCCCCCCCChh--hhcCCCCCCEEeccCCCCCccChhh-hcCCccccEEEcCCCCCcccCcccccCC--CCccEEEccC
Q psy10289 196 LAHNRISKLAPR--LFLKLSKLKSLDLSYNDIVEINPEI-FKDIQELKTFKCRSCGLENINPMMYSIL--ADLIYLDLGY 270 (497)
Q Consensus 196 l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~~~l--~~L~~L~l~~ 270 (497)
+++|.+++..+. .|..+++|++|++++|.+.++.+.. +.++++|+.|++++|.++.+.+..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 999999874344 3889999999999999999986654 8899999999999999999888777665 7899999999
Q ss_pred CCCCccChhh--------hcCCccCceeeccCCcCCCcCccccCC---CCCccEEEccCCccccc----------ccccc
Q psy10289 271 NQLKYLLADE--------LEDLKKLETLLLDGNHFPVILEKSFSS---QFKLQVLCLKRNRLAKV----------TTTAF 329 (497)
Q Consensus 271 n~l~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~~L~~L~l~~n~l~~~----------~~~~~ 329 (497)
|.+.+..+.. +..+++|++|++++|.+.+..+..+.. .++|+.|++++|...+. ....+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 9998765443 336689999999999998876665543 37899999998864432 11112
Q ss_pred c--CCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCC
Q psy10289 330 T--NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407 (497)
Q Consensus 330 ~--~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~ 407 (497)
. ..++|++|++++|.+.+..+..+..++. |+.|++++|.++ ...+..+..+++|+.|++++|+++.+++..|..++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTT-CCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccCceEEEecCccccccchhhcccCCC-CCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 2 2368999999999999998888988887 999999999987 33456788999999999999999999888899999
Q ss_pred cCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhHhhhh
Q psy10289 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFALQSS 472 (497)
Q Consensus 408 ~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~ 472 (497)
+|++|++++|+++++.+..|..+++|++|++++|+++++|+..+......+.+++++|+++|+|.
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 99999999999999999999999999999999999999998876533334446899999999886
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.4e-40 Score=345.86 Aligned_cols=348 Identities=15% Similarity=0.229 Sum_probs=301.6
Q ss_pred cCccccCCCCCcEEEccCCCCCcc-----------------CCCCCC--CCCCCCEEeccCCcCccCCccccCCCCCCcE
Q psy10289 109 IGPIFQQFQHLEELHITNSFIPAI-----------------GFHPFW--GVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169 (497)
Q Consensus 109 ~~~~~~~~~~L~~L~l~~~~i~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 169 (497)
++..+.++++|++|++++|.++.. -+..+. ++++|++|++++|++.+..|..+.++++|++
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 667899999999999999999982 346677 9999999999999999888899999999999
Q ss_pred EeccCCC-Ccc--CCcccccCC------cCCcEEeccCCCCCCCChh--hhcCCCCCCEEeccCCCCC-ccChhhhcCCc
Q psy10289 170 LYLDFNK-IES--IPSSVFMHL------SDLRVLSLAHNRISKLAPR--LFLKLSKLKSLDLSYNDIV-EINPEIFKDIQ 237 (497)
Q Consensus 170 L~L~~n~-~~~--~~~~~~~~l------~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~-~~~~~~~~~~~ 237 (497)
|++++|. ++. +|.. +..+ ++|++|++++|+++.+ |. .+..+++|++|++++|.+. .++ .+..++
T Consensus 278 L~Ls~n~~l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n~l~~i-p~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~ 353 (636)
T 4eco_A 278 INVACNRGISGEQLKDD-WQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEI 353 (636)
T ss_dssp EECTTCTTSCHHHHHHH-HHHHHHSGGGGTCCEEECCSSCCSSC-CCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEE
T ss_pred EECcCCCCCccccchHH-HHhhhccccCCCCCEEECCCCcCCcc-CchhhhccCCCCCEEeCcCCcCccchh--hhCCCC
Confidence 9999998 885 6654 4454 8999999999999966 55 8999999999999999999 565 788999
Q ss_pred cccEEEcCCCCCcccCcccccCCCC-ccEEEccCCCCCccChhhhcCCc--cCceeeccCCcCCCcCccccC-------C
Q psy10289 238 ELKTFKCRSCGLENINPMMYSILAD-LIYLDLGYNQLKYLLADELEDLK--KLETLLLDGNHFPVILEKSFS-------S 307 (497)
Q Consensus 238 ~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~-------~ 307 (497)
+|+.|++++|.++.++.. +..+++ |++|++++|.+.. .|..+..++ +|++|++++|.+.+..|..+. .
T Consensus 354 ~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 354 KLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EESEEECCSSEEEECCTT-SEEECTTCCEEECCSSCCSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCEEECCCCccccccHh-hhhhcccCcEEEccCCcCcc-cchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 999999999999966554 777888 9999999999995 456666654 899999999999998888887 7
Q ss_pred CCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccccccc------CCCEEEcCCCcCCCcchhhHhh-
Q psy10289 308 QFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN------SLRDLKISGNNIQLSDVKNVLD- 380 (497)
Q Consensus 308 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~------~L~~L~ls~n~i~~~~~~~~~~- 380 (497)
+++|++|++++|.++.++...+..+++|++|++++|+++.++...+..... +|+.|++++|.++ .++..+.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT--KLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC--BCCGGGST
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC--ccChhhhh
Confidence 789999999999999998887888999999999999999888777665431 3999999999988 5677776
Q ss_pred -cCCCCCEEecCCCcCCcCCcccccCCCcCcEEeC------cCCCCcccchhhhccCCCCCEEECCCCccccccCCCccc
Q psy10289 381 -KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNL------SGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIM 453 (497)
Q Consensus 381 -~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~L------s~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 453 (497)
.+++|+.|++++|+++.+|..+ ..+++|+.|++ ++|++.+..+..+..+++|++|++++|+++.+|..++
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~-- 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQP-LNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT-- 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGG-GGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--
T ss_pred ccCCCcCEEECCCCCCCCcChhh-hcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh--
Confidence 8999999999999999998875 57899999999 5677888888889999999999999999999998855
Q ss_pred CCchhHHHHhhhhhH
Q psy10289 454 SEPKNIHKAAKNSFA 468 (497)
Q Consensus 454 ~~~~~~~~~~~n~~~ 468 (497)
.. .+.+++++|++.
T Consensus 587 ~~-L~~L~Ls~N~l~ 600 (636)
T 4eco_A 587 PN-ISVLDIKDNPNI 600 (636)
T ss_dssp TT-CCEEECCSCTTC
T ss_pred Cc-CCEEECcCCCCc
Confidence 33 344589999887
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-40 Score=352.89 Aligned_cols=390 Identities=23% Similarity=0.276 Sum_probs=311.7
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCC-CCCccCCCCCCCCCCCCEEec
Q psy10289 70 YEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS-FIPAIGFHPFWGVPSLRYLNL 148 (497)
Q Consensus 70 ~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~i~~~~~~~~~~l~~L~~L~l 148 (497)
..++|...++..+|. ++..++.|+++.+. .....+..|.++++|++|++++| .+..+++.+|.++++|++|++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~---i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNY---IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCC---CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCc---CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC
Confidence 479999999999885 88899999999872 33344568999999999999999 567788889999999999999
Q ss_pred cCCcCccCCccccCCCCCCcEEeccCCCCcc--CCcccccCCcCCcEEeccCCCCCCCCh-hhhcCCCCCCEEeccCCCC
Q psy10289 149 THNNITSLLDYNFKGMMNLQELYLDFNKIES--IPSSVFMHLSDLRVLSLAHNRISKLAP-RLFLKLSKLKSLDLSYNDI 225 (497)
Q Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i 225 (497)
++|+++++.+.+|.++++|++|++++|.++. .+...|.++++|++|++++|.+++..+ ..|.++++|++|++++|.+
T Consensus 81 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 81 GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp TTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred CCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 9999999999999999999999999999986 233458899999999999999988754 5789999999999999998
Q ss_pred CccChhhhcCC--cc------------------------------ccEEEcCCCCCcccCccc-----------------
Q psy10289 226 VEINPEIFKDI--QE------------------------------LKTFKCRSCGLENINPMM----------------- 256 (497)
Q Consensus 226 ~~~~~~~~~~~--~~------------------------------L~~L~l~~~~l~~~~~~~----------------- 256 (497)
.++.+..+..+ ++ |+.|++++|.++...+..
T Consensus 161 ~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 161 FLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred CeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 87666555433 33 566666666443221111
Q ss_pred -------------------ccC--CCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEE
Q psy10289 257 -------------------YSI--LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLC 315 (497)
Q Consensus 257 -------------------~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 315 (497)
|.+ .++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|+
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 320 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLN 320 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEE
Confidence 111 25788888888888888888889999999999999999998888899999999999
Q ss_pred ccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcc---------------------
Q psy10289 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSD--------------------- 374 (497)
Q Consensus 316 l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~--------------------- 374 (497)
+++|.+..+.+..+..+++|++|++++|.+..+++..|..+++ |+.|++++|.++...
T Consensus 321 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~-L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 321 LSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK-LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp EESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC-CCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCC
T ss_pred CCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC-CCEEECCCCCCCcccCCCCcchhccCCCCccccccc
Confidence 9999999888888999999999999999999998888888877 999999999865211
Q ss_pred ------------------hhhHhhcCCCCCEEecCCCcCCcCCc------------------------------ccccCC
Q psy10289 375 ------------------VKNVLDKLVKLKALSIADMNYTDIPK------------------------------GLFKMN 406 (497)
Q Consensus 375 ------------------~~~~~~~~~~L~~L~l~~n~i~~l~~------------------------------~~~~~~ 406 (497)
....+..+++|+.|++++|+++.++. ..|..+
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l 479 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCB
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCc
Confidence 11223467778888888877764322 235566
Q ss_pred CcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhH
Q psy10289 407 PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 407 ~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
++|+.|+|++|+++++++..|..+++|+.|++++|+++++|+..+. . ..+.+++++|.++
T Consensus 480 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~-~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-A-NLEILDISRNQLL 539 (844)
T ss_dssp CCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-S-CCCEEEEEEECCC
T ss_pred ccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-c-cccEEECCCCcCC
Confidence 7788888888888888888888888899999999988888887665 3 3334578888887
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.5e-40 Score=337.52 Aligned_cols=390 Identities=18% Similarity=0.226 Sum_probs=309.1
Q ss_pred cccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCC--CCC
Q psy10289 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPI--PIG 86 (497)
Q Consensus 9 ~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~--~~~ 86 (497)
++|++||+++|.|+.+.+..|.++++|++|+ .. ...+...+ .+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~--------Ls--------------------------~n~i~~~~~~~~~ 71 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLI--------LK--------------------------SSRINTIEGDAFY 71 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEE--------CT--------------------------TSCCCEECTTTTT
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEE--------CC--------------------------CCCcCccChhhcc
Confidence 6899999999999999999999999988763 11 11111111 111
Q ss_pred CCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC-CCCCCCCCCCCEEeccCCc-CccCCccccCCC
Q psy10289 87 QMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG-FHPFWGVPSLRYLNLTHNN-ITSLLDYNFKGM 164 (497)
Q Consensus 87 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 164 (497)
. -..+++|+++.+. .....+..|.++++|++|++++|.++.++ +..|.++++|++|++++|+ +..+++..|.++
T Consensus 72 ~-l~~L~~L~Ls~n~---l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 72 S-LGSLEHLDLSDNH---LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp T-CTTCCEEECTTSC---CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred c-cccCCEEECCCCc---cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 1 2368889888772 22223335899999999999999998764 3578899999999999998 667766789999
Q ss_pred CCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccCh---hh---------
Q psy10289 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP---EI--------- 232 (497)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~---~~--------- 232 (497)
++|++|++++|.++...+..+..+++|++|++++|.+..+....+..+++|++|++++|.+.+... ..
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred cccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 999999999999998777778899999999999999887755555678999999999998776410 00
Q ss_pred ------------------------------------------------------------------------------hc
Q psy10289 233 ------------------------------------------------------------------------------FK 234 (497)
Q Consensus 233 ------------------------------------------------------------------------------~~ 234 (497)
+.
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 01
Q ss_pred CCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccCh---hhhcCCccCceeeccCCcCCCcCc--cccCCCC
Q psy10289 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA---DELEDLKKLETLLLDGNHFPVILE--KSFSSQF 309 (497)
Q Consensus 235 ~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~--~~~~~~~ 309 (497)
...+|+.|++++|.+..++...+..+++|++|++++|.+.+..+ ..++.+++|++|++++|.+++..+ ..+..++
T Consensus 308 ~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~ 387 (549)
T 2z81_A 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLK 387 (549)
T ss_dssp HSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCT
T ss_pred hcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCC
Confidence 11345666666666666665555678999999999999987553 337889999999999999988643 4578899
Q ss_pred CccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEe
Q psy10289 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALS 389 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~ 389 (497)
+|++|++++|+++.++. .+..+++|++|++++|+++.++... +.+|+.|++++|.++.. ...+++|+.|+
T Consensus 388 ~L~~L~Ls~N~l~~lp~-~~~~~~~L~~L~Ls~N~l~~l~~~~----~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~ 457 (549)
T 2z81_A 388 NLTSLDISRNTFHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSF-----SLFLPRLQELY 457 (549)
T ss_dssp TCCEEECTTCCCCCCCS-CCCCCTTCCEEECTTSCCSCCCTTS----CTTCSEEECCSSCCSCC-----CCCCTTCCEEE
T ss_pred CCCEEECCCCCCccCCh-hhcccccccEEECCCCCcccccchh----cCCceEEECCCCChhhh-----cccCChhcEEE
Confidence 99999999999997755 5788999999999999998775433 23599999999998732 25789999999
Q ss_pred cCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccC
Q psy10289 390 IADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448 (497)
Q Consensus 390 l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 448 (497)
+++|+++.||.. ..+++|+.|++++|+++++++..+..+++|+.|++++|++++-.+
T Consensus 458 Ls~N~l~~ip~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 458 ISRNKLKTLPDA--SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCSSCCCG--GGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccCcCCCc--ccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 999999999974 467999999999999999999999999999999999999987544
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.2e-40 Score=339.28 Aligned_cols=349 Identities=22% Similarity=0.318 Sum_probs=292.7
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
+++++|++++|.++.+++.+|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccC-hhhhcCCccccEEEcCCCCCcccCcccccCCCCc----cEEEccCC
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFKDIQELKTFKCRSCGLENINPMMYSILADL----IYLDLGYN 271 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L----~~L~l~~n 271 (497)
++|+++.+.+..|.++++|++|++++|.+..+. +..|+++++|+.|++++|.++.+++..+..+.+| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 999999987767999999999999999998853 6779999999999999999999888877777777 78888888
Q ss_pred CCCccChhh-----------------------------------------------------------------------
Q psy10289 272 QLKYLLADE----------------------------------------------------------------------- 280 (497)
Q Consensus 272 ~l~~~~~~~----------------------------------------------------------------------- 280 (497)
.+.+..+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 776544332
Q ss_pred ----------hcCCccCceeeccCCcCCCcCcc----------------------cc-------------------CCCC
Q psy10289 281 ----------LEDLKKLETLLLDGNHFPVILEK----------------------SF-------------------SSQF 309 (497)
Q Consensus 281 ----------~~~l~~L~~L~l~~n~~~~~~~~----------------------~~-------------------~~~~ 309 (497)
+..+++|++|++++|.+.++.+. .+ ..++
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 33345666666666554432211 00 3567
Q ss_pred CccEEEccCCcccccc--cccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCE
Q psy10289 310 KLQVLCLKRNRLAKVT--TTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKA 387 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 387 (497)
+|++|++++|.+.... +..+..+++|++|++++|.+..++.. +..++. |+.|++++|.++.......+..+++|+.
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT-CCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC-CCEEEccCCccccccchhhhhcCCCCCE
Confidence 8999999999988765 55688899999999999999988766 777776 9999999999874333356789999999
Q ss_pred EecCCCcCCcCCcccccCCCcCcEEeCcCCCCc-ccchhhhccCCCCCEEECCCCccccccCCCcc-cCCchhHHHHhhh
Q psy10289 388 LSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ-DIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYI-MSEPKNIHKAAKN 465 (497)
Q Consensus 388 L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~~~~~~~~~n 465 (497)
|++++|.++.+++..|..+++|+.|++++|+++ +..+..+..+++|++|++++|+++++++..+. ...++ .+++++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ-VLNMASN 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEECCSS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCC-EEeCCCC
Confidence 999999999888888899999999999999998 45567789999999999999999999665444 44443 3488888
Q ss_pred hhH
Q psy10289 466 SFA 468 (497)
Q Consensus 466 ~~~ 468 (497)
+++
T Consensus 505 ~l~ 507 (570)
T 2z63_A 505 QLK 507 (570)
T ss_dssp CCS
T ss_pred cCC
Confidence 887
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5e-39 Score=335.95 Aligned_cols=351 Identities=18% Similarity=0.285 Sum_probs=293.2
Q ss_pred CCCceEEeecCCCCCCcc--------------ccCcccc--CCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCc-
Q psy10289 90 LGTEVLKIVPSEENPNHL--------------TIGPIFQ--QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN- 152 (497)
Q Consensus 90 ~~~~~l~l~~~~~~~~~~--------------~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~- 152 (497)
..++.|+++.+....... .++..+. ++++|++|++++|.+...-+..|.++++|++|++++|+
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 478999999883221000 0677777 99999999999999877667889999999999999998
Q ss_pred Ccc-CCccccCCC------CCCcEEeccCCCCccCCc-ccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCC
Q psy10289 153 ITS-LLDYNFKGM------MNLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224 (497)
Q Consensus 153 l~~-~~~~~~~~l------~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~ 224 (497)
+++ ..|..+..+ ++|++|++++|.++.+|. ..|+++++|++|++++|.+++..| .|..+++|++|++++|.
T Consensus 286 l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~ 364 (636)
T 4eco_A 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ 364 (636)
T ss_dssp SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE
T ss_pred CccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc
Confidence 887 456666665 999999999999998886 358899999999999999994445 88999999999999999
Q ss_pred CCccChhhhcCCcc-ccEEEcCCCCCcccCcccccCCC--CccEEEccCCCCCccChhhhc-------CCccCceeeccC
Q psy10289 225 IVEINPEIFKDIQE-LKTFKCRSCGLENINPMMYSILA--DLIYLDLGYNQLKYLLADELE-------DLKKLETLLLDG 294 (497)
Q Consensus 225 i~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~l~~ 294 (497)
+..++. .+.++++ |+.|++++|.++.++. .+.... +|++|++++|.+.+..|..+. .+++|++|++++
T Consensus 365 l~~lp~-~l~~l~~~L~~L~Ls~N~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 365 ITEIPA-NFCGFTEQVENLSFAHNKLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EEECCT-TSEEECTTCCEEECCSSCCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred cccccH-hhhhhcccCcEEEccCCcCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 997754 4888999 9999999999997654 445444 899999999999998888888 788999999999
Q ss_pred CcCCCcCccccCCCCCccEEEccCCcccccccccccCCC-------CCCEEECcCCCCCccCcccc-cccccCCCEEEcC
Q psy10289 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLT-------NLIELDISYNKLDRLEVASF-DPIENSLRDLKIS 366 (497)
Q Consensus 295 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~-------~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~ls 366 (497)
|.+..+.+..+..+++|++|++++|.++.++...+.... +|++|++++|+++.++...+ ..++. |+.|+++
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~-L~~L~Ls 521 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY-LVGIDLS 521 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT-CCEEECC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC-cCEEECC
Confidence 999987776777889999999999999988776665443 99999999999998765444 36666 9999999
Q ss_pred CCcCCCcchhhHhhcCCCCCEEecCC------CcCC-cCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECC
Q psy10289 367 GNNIQLSDVKNVLDKLVKLKALSIAD------MNYT-DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439 (497)
Q Consensus 367 ~n~i~~~~~~~~~~~~~~L~~L~l~~------n~i~-~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 439 (497)
+|.++. +|..+..+++|+.|++++ |++. .+|.. +..+++|+.|++++|+++.++.. + .++|+.|+++
T Consensus 522 ~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~l~~ip~~-~--~~~L~~L~Ls 595 (636)
T 4eco_A 522 YNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSNDIRKVNEK-I--TPNISVLDIK 595 (636)
T ss_dssp SSCCSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSCCCBCCSC-C--CTTCCEEECC
T ss_pred CCCCCC--cChhhhcCCCCCEEECCCCcccccCcccccChHH-HhcCCCCCEEECCCCcCCccCHh-H--hCcCCEEECc
Confidence 999983 788889999999999954 5554 55554 67899999999999999877765 3 3799999999
Q ss_pred CCccccccCCC
Q psy10289 440 RNKFKGFDEKS 450 (497)
Q Consensus 440 ~n~l~~~~~~~ 450 (497)
+|++.+++...
T Consensus 596 ~N~l~~~~~~~ 606 (636)
T 4eco_A 596 DNPNISIDLSY 606 (636)
T ss_dssp SCTTCEEECTT
T ss_pred CCCCccccHHh
Confidence 99999987643
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-38 Score=319.06 Aligned_cols=326 Identities=25% Similarity=0.282 Sum_probs=295.2
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
+.++.+++.++.++.. + .++++.|++++|+++++.+..|.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 5788888889988753 3 258999999999999999999999999999999999999998888999999999999999
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChh
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLAD 279 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 279 (497)
+++.+.+..|.++++|++|++++|.+..+.+..|.++++|+.|++++|.+..+.+..|..+++|++|++++|.+++..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99999878899999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred hhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccC
Q psy10289 280 ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359 (497)
Q Consensus 280 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~ 359 (497)
.+..+++|+.|++++|.+.+..+..|..+++|++|++++|...+..+.......+|++|++++|.++.++...+..++.
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~- 249 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY- 249 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT-
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc-
Confidence 9999999999999999999988889999999999999998765444434445569999999999999988888888877
Q ss_pred CCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECC
Q psy10289 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439 (497)
Q Consensus 360 L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~ 439 (497)
|+.|++++|.++. ..+..+..+++|+.|++++|+++.+++..|..+++|+.|++++|+++++++..|..+++|++|+++
T Consensus 250 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 250 LRFLNLSYNPIST-IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp CCEEECCSSCCCE-ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred cCeeECCCCcCCc-cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 9999999999873 234567889999999999999999988889999999999999999999999999999999999999
Q ss_pred CCccccccCCC
Q psy10289 440 RNKFKGFDEKS 450 (497)
Q Consensus 440 ~n~l~~~~~~~ 450 (497)
+|++++-+...
T Consensus 329 ~N~l~c~c~~~ 339 (477)
T 2id5_A 329 SNPLACDCRLL 339 (477)
T ss_dssp SSCEECSGGGH
T ss_pred CCCccCccchH
Confidence 99998755433
No 22
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-38 Score=337.48 Aligned_cols=348 Identities=17% Similarity=0.200 Sum_probs=295.0
Q ss_pred cCccccCCCCCcEEEccCCCCCc------------------cCCCCCC--CCCCCCEEeccCCcCccCCccccCCCCCCc
Q psy10289 109 IGPIFQQFQHLEELHITNSFIPA------------------IGFHPFW--GVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168 (497)
Q Consensus 109 ~~~~~~~~~~L~~L~l~~~~i~~------------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 168 (497)
+|..|.++++|++|++++|.++. ++ ..+. ++++|++|++++|++.+..|..|.++++|+
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP-~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~ 518 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN-EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT-SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCC
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC-hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCC
Confidence 66789999999999999999998 54 4555 999999999999999888889999999999
Q ss_pred EEeccCCC-Ccc--CCcc------cccCCcCCcEEeccCCCCCCCChh--hhcCCCCCCEEeccCCCCCccChhhhcCCc
Q psy10289 169 ELYLDFNK-IES--IPSS------VFMHLSDLRVLSLAHNRISKLAPR--LFLKLSKLKSLDLSYNDIVEINPEIFKDIQ 237 (497)
Q Consensus 169 ~L~L~~n~-~~~--~~~~------~~~~l~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~ 237 (497)
+|++++|. ++. +|.. .+..+++|++|++++|.++.+ |. .|.++++|++|++++|.+..++ .|..++
T Consensus 519 ~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~i-p~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~ 595 (876)
T 4ecn_A 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEF-PASASLQKMVKLGLLDCVHNKVRHLE--AFGTNV 595 (876)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBC-CCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTS
T ss_pred EEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCcc-CChhhhhcCCCCCEEECCCCCcccch--hhcCCC
Confidence 99999998 875 6543 233456999999999999966 55 8999999999999999999776 799999
Q ss_pred cccEEEcCCCCCcccCcccccCCCC-ccEEEccCCCCCccChhhhcCCcc--CceeeccCCcCCCcCcccc---C--CCC
Q psy10289 238 ELKTFKCRSCGLENINPMMYSILAD-LIYLDLGYNQLKYLLADELEDLKK--LETLLLDGNHFPVILEKSF---S--SQF 309 (497)
Q Consensus 238 ~L~~L~l~~~~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~~~~~~~~~~---~--~~~ 309 (497)
+|+.|++++|.++.++. .+..+++ |+.|++++|.+.. .|..+..++. |+.|++++|.+.+..+... . .++
T Consensus 596 ~L~~L~Ls~N~l~~lp~-~l~~l~~~L~~L~Ls~N~L~~-lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~ 673 (876)
T 4ecn_A 596 KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI 673 (876)
T ss_dssp EESEEECCSSCCSCCCT-TSCEECTTCCEEECCSSCCCS-CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCC
T ss_pred cceEEECcCCccccchH-HHhhccccCCEEECcCCCCCc-CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCC
Confidence 99999999999996654 4677888 9999999999985 4566766654 9999999999987655322 2 345
Q ss_pred CccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccc------cCCCEEEcCCCcCCCcchhhHhh--c
Q psy10289 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE------NSLRDLKISGNNIQLSDVKNVLD--K 381 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~------~~L~~L~ls~n~i~~~~~~~~~~--~ 381 (497)
+|++|++++|.+..++...+..+++|+.|++++|++..++...+.... ++|+.|++++|.++ .++..+. .
T Consensus 674 ~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~ 751 (876)
T 4ecn_A 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATT 751 (876)
T ss_dssp CEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTT
T ss_pred CcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhcc
Confidence 899999999999988887777899999999999999988776665432 13999999999988 5677776 8
Q ss_pred CCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcC------CCCcccchhhhccCCCCCEEECCCCccccccCCCcccCC
Q psy10289 382 LVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG------NNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSE 455 (497)
Q Consensus 382 ~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~------n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 455 (497)
+++|+.|++++|+++.+|..+ ..+++|+.|+|++ |++.+..+..+..+++|+.|++++|+++.+|...+ .
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~--~- 827 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT--P- 827 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC--S-
T ss_pred CCCcCEEEeCCCCCCccchhh-hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc--C-
Confidence 999999999999999998775 5789999999976 77888888889999999999999999999998854 3
Q ss_pred chhHHHHhhhhhH
Q psy10289 456 PKNIHKAAKNSFA 468 (497)
Q Consensus 456 ~~~~~~~~~n~~~ 468 (497)
..+.+++++|++.
T Consensus 828 ~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 828 QLYILDIADNPNI 840 (876)
T ss_dssp SSCEEECCSCTTC
T ss_pred CCCEEECCCCCCC
Confidence 3344588999875
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2e-37 Score=320.21 Aligned_cols=385 Identities=16% Similarity=0.200 Sum_probs=227.8
Q ss_pred EEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEecc
Q psy10289 70 YEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLT 149 (497)
Q Consensus 70 ~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~ 149 (497)
..++|...++..+|. .++..++.|+++.+. .....+..|.++++|++|++++|.++.+.+.+|.++++|++|+++
T Consensus 34 ~~l~ls~~~L~~ip~--~~~~~L~~L~Ls~N~---i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK--DLPPRTKALSLSQNS---ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp CEEECTTSCCCSCCT--TSCTTCCEEECCSSC---CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred cEEEcCCCCCccCCC--CCCCCcCEEECCCCC---ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 478999999988773 456899999998873 222334589999999999999999999999999999999999999
Q ss_pred CCcCccCCccccCCCCCCcEEeccCCCCccCC-cccccCCcCCcEEeccCCCCCCCChhhhcCCCCC--CEEeccCCCC-
Q psy10289 150 HNNITSLLDYNFKGMMNLQELYLDFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL--KSLDLSYNDI- 225 (497)
Q Consensus 150 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~~n~i- 225 (497)
+|+++.++.. .+++|++|++++|.++.++ +..|+++++|++|++++|+++... +..+++| ++|++++|.+
T Consensus 109 ~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 109 HNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp TSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSCC
T ss_pred CCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeeccccc
Confidence 9999988654 7999999999999999876 367899999999999999998643 4445555 9999999987
Q ss_pred -CccChhhhcC--------------------------CccccEEEcCCCCC----------------------------c
Q psy10289 226 -VEINPEIFKD--------------------------IQELKTFKCRSCGL----------------------------E 250 (497)
Q Consensus 226 -~~~~~~~~~~--------------------------~~~L~~L~l~~~~l----------------------------~ 250 (497)
.+..+..+.. +++|+.+++++|.. .
T Consensus 183 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~ 262 (562)
T 3a79_B 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT 262 (562)
T ss_dssp CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence 5544444433 22333343333310 0
Q ss_pred -----ccCcccccCCCCccEEEccCCCCCccChhhh-----cCC--------------------------ccCceeeccC
Q psy10289 251 -----NINPMMYSILADLIYLDLGYNQLKYLLADEL-----EDL--------------------------KKLETLLLDG 294 (497)
Q Consensus 251 -----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l--------------------------~~L~~L~l~~ 294 (497)
.+++ .....+|++|++++|.+.+..|..+ ..+ .++++|++++
T Consensus 263 ~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 263 WKCSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHH--HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHH--hhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 0000 0001244444444444443222222 111 2244444444
Q ss_pred CcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCc--ccccccccCCCEEEcCCCcCCC
Q psy10289 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV--ASFDPIENSLRDLKISGNNIQL 372 (497)
Q Consensus 295 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~ls~n~i~~ 372 (497)
|.+.... ....+++|++|++++|.+++..+..+..+++|++|++++|++++++. ..+..++. |+.|++++|.++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~-L~~L~l~~N~l~~ 417 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS-LETLDVSLNSLNS 417 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT-CCEEECTTSCCBS
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC-CCEEECCCCcCCC
Confidence 4433221 11344555555555555555444445555555555555555554432 23444444 5555555555542
Q ss_pred cchhhHhhcCCCCCEEecCCCcCCcCCcccccCC-CcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCc
Q psy10289 373 SDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN-PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451 (497)
Q Consensus 373 ~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 451 (497)
......+..+++|+.|++++|+++... +..+ ++|+.|++++|+++.+++..+ .+++|++|++++|+++.+|+..+
T Consensus 418 ~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~~L~~L~L~~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~~ 493 (562)
T 3a79_B 418 HAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDLHNNRIMSIPKDVT-HLQALQELNVASNQLKSVPDGVF 493 (562)
T ss_dssp CCSSCCCCCCTTCCEEECCSSCCCGGG---GSSCCTTCSEEECCSSCCCCCCTTTT-SSCCCSEEECCSSCCCCCCTTST
T ss_pred ccChhhhcCcccCCEEECCCCCCCcch---hhhhcCcCCEEECCCCcCcccChhhc-CCCCCCEEECCCCCCCCCCHHHH
Confidence 111123444555555555555554211 1122 455555555555555554433 55555555555555555555522
Q ss_pred ccCCchhHHHHhhhhhHhhhhcc
Q psy10289 452 IMSEPKNIHKAAKNSFALQSSMG 474 (497)
Q Consensus 452 ~~~~~~~~~~~~~n~~~~~~~~~ 474 (497)
......+.+++++|+|.|+|.+.
T Consensus 494 ~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 494 DRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTCTTCCCEECCSCCBCCCHHHH
T ss_pred hcCCCCCEEEecCCCcCCCcchH
Confidence 21111222355555555555443
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=319.10 Aligned_cols=385 Identities=19% Similarity=0.235 Sum_probs=269.1
Q ss_pred EEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccC
Q psy10289 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTH 150 (497)
Q Consensus 71 ~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 150 (497)
.++|+..++..+|. .++..++.++++.+. .....+..|.++++|++|++++|.++.+.+..|.++++|++|++++
T Consensus 4 ~l~ls~n~l~~ip~--~~~~~L~~L~Ls~n~---i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 4 LVDRSKNGLIHVPK--DLSQKTTILNISQNY---ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp EEECTTSCCSSCCC--SCCTTCSEEECCSSC---CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred eEecCCCCcccccc--cccccccEEECCCCc---ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 57788888877663 455789999998873 2222335799999999999999999999888999999999999999
Q ss_pred CcCccCCccccCCCCCCcEEeccCCCCccCC-cccccCCcCCcEEeccCCCCCCCChhhhcCCCCC--CEEeccCCCC--
Q psy10289 151 NNITSLLDYNFKGMMNLQELYLDFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL--KSLDLSYNDI-- 225 (497)
Q Consensus 151 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L--~~L~l~~n~i-- 225 (497)
|+++.++.. .+++|++|++++|.++.++ +..|+++++|++|++++|.++. ..+..+++| ++|++++|.+
T Consensus 79 N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~ 152 (520)
T 2z7x_B 79 NKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG 152 (520)
T ss_dssp SCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT
T ss_pred CceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc
Confidence 999987554 7899999999999999754 3568999999999999999876 346667777 9999998887
Q ss_pred CccChhhhcC--------------------------Cc------------------------------------------
Q psy10289 226 VEINPEIFKD--------------------------IQ------------------------------------------ 237 (497)
Q Consensus 226 ~~~~~~~~~~--------------------------~~------------------------------------------ 237 (497)
.+..+..+.. ++
T Consensus 153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEE
T ss_pred cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhcccccccc
Confidence 4443433333 22
Q ss_pred ---------------cccEEEcCCCCCcccCcccc-----cCCCCccEEEccCCCCCccChhhhcCC---ccCceeeccC
Q psy10289 238 ---------------ELKTFKCRSCGLENINPMMY-----SILADLIYLDLGYNQLKYLLADELEDL---KKLETLLLDG 294 (497)
Q Consensus 238 ---------------~L~~L~l~~~~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~ 294 (497)
+|+.|++++|.+++..+..+ ..+++|+.+++++|.+ ..+...+..+ .+|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 34445555555443223333 4555566666665555 2222223222 3466666666
Q ss_pred CcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCc--ccccccccCCCEEEcCCCcCCC
Q psy10289 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV--ASFDPIENSLRDLKISGNNIQL 372 (497)
Q Consensus 295 n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~L~~L~ls~n~i~~ 372 (497)
|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++++. ..+..++. |+.|++++|.++.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~-L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS-LQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT-CCEEECCSSCCBC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC-CCEEECCCCcCCc
Confidence 6554432 12567788888888888887666677888888888888888876432 44666665 8888888888763
Q ss_pred cchhh-HhhcCCCCCEEecCCCcCCc-CCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCC
Q psy10289 373 SDVKN-VLDKLVKLKALSIADMNYTD-IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 373 ~~~~~-~~~~~~~L~~L~l~~n~i~~-l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
.++. .+..+++|+.|++++|+++. +|.. +. ++|+.|++++|+++.++...+ .+++|++|++++|+++.+|+..
T Consensus 389 -~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-l~--~~L~~L~Ls~N~l~~ip~~~~-~l~~L~~L~L~~N~l~~l~~~~ 463 (520)
T 2z7x_B 389 -DEKKGDCSWTKSLLSLNMSSNILTDTIFRC-LP--PRIKVLDLHSNKIKSIPKQVV-KLEALQELNVASNQLKSVPDGI 463 (520)
T ss_dssp -CGGGCSCCCCTTCCEEECCSSCCCGGGGGS-CC--TTCCEEECCSSCCCCCCGGGG-GCTTCCEEECCSSCCCCCCTTT
T ss_pred -ccccchhccCccCCEEECcCCCCCcchhhh-hc--ccCCEEECCCCcccccchhhh-cCCCCCEEECCCCcCCccCHHH
Confidence 1333 36677888888888887753 3322 21 688888888888887766544 7888888888888888888773
Q ss_pred cc-cCCchhHHHHhhhhhHhhhhccCC
Q psy10289 451 YI-MSEPKNIHKAAKNSFALQSSMGKN 476 (497)
Q Consensus 451 ~~-~~~~~~~~~~~~n~~~~~~~~~~~ 476 (497)
+. +..++ .+++++|+++|+|.+.+.
T Consensus 464 ~~~l~~L~-~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 464 FDRLTSLQ-KIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp TTTCTTCC-EEECCSSCBCCCHHHHHH
T ss_pred hccCCccc-EEECcCCCCcccCCchHH
Confidence 33 33333 347788888888876543
No 25
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.2e-39 Score=328.27 Aligned_cols=357 Identities=20% Similarity=0.203 Sum_probs=277.4
Q ss_pred ceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEec
Q psy10289 93 EVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172 (497)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 172 (497)
+.++++.+.. ..++..+. ++|++|++++|.++.+.+..|.++++|++|++++|+++++.+.+|.++++|++|++
T Consensus 3 ~~l~ls~n~l----~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGL----IHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCC----SSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCc----cccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 3556655522 13444444 89999999999999998888999999999999999999998899999999999999
Q ss_pred cCCCCccCCcccccCCcCCcEEeccCCCCCCC-ChhhhcCCCCCCEEeccCCCCCccChhhhcCCccc--cEEEcCCCCC
Q psy10289 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL--KTFKCRSCGL 249 (497)
Q Consensus 173 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~~~~l 249 (497)
++|.++.+|.. .+++|++|++++|.++++ .|..|.++++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 77 s~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 77 SHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred CCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 99999998875 789999999999999875 46789999999999999999876 346777778 9999999988
Q ss_pred --cccCccccc--------------------------CCCCccEEEccCCC-------CCccChhhhcC-----------
Q psy10289 250 --ENINPMMYS--------------------------ILADLIYLDLGYNQ-------LKYLLADELED----------- 283 (497)
Q Consensus 250 --~~~~~~~~~--------------------------~l~~L~~L~l~~n~-------l~~~~~~~~~~----------- 283 (497)
....+..+. .+++|+.+++++|. +.+..+ .+..
T Consensus 151 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~ 229 (520)
T 2z7x_B 151 YGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNN 229 (520)
T ss_dssp TTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEE
T ss_pred cccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccc
Confidence 443333333 34455555555543 111111 1111
Q ss_pred ----------------CccCceeeccCCcCCCcCcccc-----CCCCCccEEEccCCcc---------------------
Q psy10289 284 ----------------LKKLETLLLDGNHFPVILEKSF-----SSQFKLQVLCLKRNRL--------------------- 321 (497)
Q Consensus 284 ----------------l~~L~~L~l~~n~~~~~~~~~~-----~~~~~L~~L~l~~n~l--------------------- 321 (497)
.++|++|++++|.+.+..|..+ ..+++|+.+++++|.+
T Consensus 230 ~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l 309 (520)
T 2z7x_B 230 IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309 (520)
T ss_dssp EEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEE
T ss_pred cccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEc
Confidence 2356777777777665555555 5566665555555554
Q ss_pred -----cccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCc-chhhHhhcCCCCCEEecCCCcC
Q psy10289 322 -----AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLS-DVKNVLDKLVKLKALSIADMNY 395 (497)
Q Consensus 322 -----~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~~L~~L~l~~n~i 395 (497)
..... +..+++|++|++++|++.+..+..+..++. |+.|++++|.++.. .++..+..+++|+.|++++|++
T Consensus 310 ~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l 386 (520)
T 2z7x_B 310 SGTRMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTE-LETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386 (520)
T ss_dssp ESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSS-CCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC
T ss_pred CCCccccccc--hhhCCcccEEEeECCccChhhhhhhccCCC-CCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC
Confidence 22211 267899999999999999977788888887 99999999998732 4567789999999999999999
Q ss_pred Cc-CCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhH
Q psy10289 396 TD-IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 396 ~~-l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
+. +|...|..+++|+.|++++|++++..+..+. ++|++|++++|+++.+|+..+.+..++.+ ++++|+++
T Consensus 387 ~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L-~L~~N~l~ 457 (520)
T 2z7x_B 387 SYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQEL-NVASNQLK 457 (520)
T ss_dssp BCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEE-ECCSSCCC
T ss_pred CcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEE-ECCCCcCC
Confidence 98 9988889999999999999999876665542 79999999999999999988866665554 88999888
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.1e-36 Score=305.25 Aligned_cols=326 Identities=24% Similarity=0.362 Sum_probs=279.8
Q ss_pred CCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEE
Q psy10289 91 GTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170 (497)
Q Consensus 91 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 170 (497)
.++.|+++.+.. ..++ .+.++++|++|++++|.++.+.+ +.++++|++|++++|+++++.+ +..+++|++|
T Consensus 69 ~L~~L~Ls~n~l----~~~~-~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 139 (466)
T 1o6v_A 69 NLTQINFSNNQL----TDIT-PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRL 139 (466)
T ss_dssp TCCEEECCSSCC----CCCG-GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEE
T ss_pred CCCEEECCCCcc----CCch-hhhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEE
Confidence 456666665521 1122 28899999999999999998865 8899999999999999998854 8899999999
Q ss_pred eccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 171 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++++|.+..++. +..+++|++|+++ +.+.... .+..+++|++|++++|.+..++ .+..+++|+.|++++|.+.
T Consensus 140 ~l~~n~l~~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~ 212 (466)
T 1o6v_A 140 ELSSNTISDISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQIS 212 (466)
T ss_dssp EEEEEEECCCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCC
T ss_pred ECCCCccCCChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccc
Confidence 999999988764 7899999999997 4555553 3889999999999999998874 3888999999999999999
Q ss_pred ccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccccc
Q psy10289 251 NINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT 330 (497)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 330 (497)
.+.+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.++++ +.
T Consensus 213 ~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~ 284 (466)
T 1o6v_A 213 DITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LA 284 (466)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GT
T ss_pred cccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--cc
Confidence 8766 66789999999999999875 468899999999999999988755 7889999999999999998866 88
Q ss_pred CCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCc
Q psy10289 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQ 410 (497)
Q Consensus 331 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~ 410 (497)
.+++|++|++++|++.++++ +..++. |+.|++++|.++.. +. +..+++|+.|++++|+++.++. +..+++|+
T Consensus 285 ~l~~L~~L~L~~n~l~~~~~--~~~l~~-L~~L~L~~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 356 (466)
T 1o6v_A 285 GLTALTNLELNENQLEDISP--ISNLKN-LTYLTLYFNNISDI--SP-VSSLTKLQRLFFYNNKVSDVSS--LANLTNIN 356 (466)
T ss_dssp TCTTCSEEECCSSCCSCCGG--GGGCTT-CSEEECCSSCCSCC--GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred CCCccCeEEcCCCcccCchh--hcCCCC-CCEEECcCCcCCCc--hh-hccCccCCEeECCCCccCCchh--hccCCCCC
Confidence 99999999999999998765 666776 99999999998733 22 7889999999999999998853 78899999
Q ss_pred EEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCC
Q psy10289 411 FLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 411 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
.|++++|++++..+ +..+++|+.|++++|+++++|...
T Consensus 357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCCBCC
T ss_pred EEeCCCCccCccch--hhcCCCCCEEeccCCcccCCchhh
Confidence 99999999999887 788999999999999999977654
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=322.11 Aligned_cols=358 Identities=17% Similarity=0.186 Sum_probs=277.6
Q ss_pred ceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEec
Q psy10289 93 EVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172 (497)
Q Consensus 93 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 172 (497)
+.++++.+.. ..++..+. +++++|++++|.++.+++..|.++++|++|++++|+++++.+.+|.++++|++|++
T Consensus 34 ~~l~ls~~~L----~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNL----THVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCC----CSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCC----ccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 6777766522 12333332 89999999999999998889999999999999999999999999999999999999
Q ss_pred cCCCCccCCcccccCCcCCcEEeccCCCCCCCC-hhhhcCCCCCCEEeccCCCCCccChhhhcCCccc--cEEEcCCCCC
Q psy10289 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA-PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL--KTFKCRSCGL 249 (497)
Q Consensus 173 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L--~~L~l~~~~l 249 (497)
++|.++.+|.. .+++|++|++++|+++.+. |..|.++++|++|++++|.+.... +..+++| +.|++++|.+
T Consensus 108 s~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 108 SHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---TGGGTTSCEEEEEEEESSC
T ss_pred CCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---hhhhhhceeeEEEeecccc
Confidence 99999999875 7899999999999999864 478999999999999999887643 4445555 9999999988
Q ss_pred --cccCcccccC--------------------------CCCccEEEccCCCCCc----cChhhhc---------------
Q psy10289 250 --ENINPMMYSI--------------------------LADLIYLDLGYNQLKY----LLADELE--------------- 282 (497)
Q Consensus 250 --~~~~~~~~~~--------------------------l~~L~~L~l~~n~l~~----~~~~~~~--------------- 282 (497)
+...+..+.. +++|+.+++++|...- .....+.
T Consensus 182 ~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l 261 (562)
T 3a79_B 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIET 261 (562)
T ss_dssp CCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEE
T ss_pred cccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcC
Confidence 5555544443 4456666666653110 0000111
Q ss_pred ------------CCccCceeeccCCcCCCcCcccc-----CCCC--------------------------CccEEEccCC
Q psy10289 283 ------------DLKKLETLLLDGNHFPVILEKSF-----SSQF--------------------------KLQVLCLKRN 319 (497)
Q Consensus 283 ------------~l~~L~~L~l~~n~~~~~~~~~~-----~~~~--------------------------~L~~L~l~~n 319 (497)
..++|++|++++|.+.+..|..+ ..++ +|++|++++|
T Consensus 262 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 262 TWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred cHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 12367788888887775555443 2222 3555555555
Q ss_pred cccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCc-chhhHhhcCCCCCEEecCCCcCCc-
Q psy10289 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLS-DVKNVLDKLVKLKALSIADMNYTD- 397 (497)
Q Consensus 320 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~-~~~~~~~~~~~L~~L~l~~n~i~~- 397 (497)
.+..... ...+++|++|++++|++++..+..+..++. |+.|++++|.++.. ..+..+..+++|+.|++++|+++.
T Consensus 342 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 342 PFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSS-CCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CcccccC--ccCCCCceEEECCCCccccchhhhhcccCC-CCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 5443321 267899999999999999987888888887 99999999998732 345678899999999999999987
Q ss_pred CCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhH
Q psy10289 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 398 l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
+|...|..+++|+.|++++|++++..+..+. ++|++|++++|+++.+|+..+.+..++.+ ++++|+++
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L-~L~~N~l~ 486 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQEL-NVASNQLK 486 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEE-ECCSSCCC
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEE-ECCCCCCC
Confidence 9998899999999999999999876554432 79999999999999999998866665544 88899888
No 28
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.5e-38 Score=332.29 Aligned_cols=352 Identities=19% Similarity=0.256 Sum_probs=286.0
Q ss_pred CCCceEEeecCCCCCCcc--------------ccCcccc--CCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCc-
Q psy10289 90 LGTEVLKIVPSEENPNHL--------------TIGPIFQ--QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN- 152 (497)
Q Consensus 90 ~~~~~l~l~~~~~~~~~~--------------~~~~~~~--~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~- 152 (497)
..++.|+++.+......+ .+++.+. ++++|++|++++|.+...-+..|.++++|++|++++|+
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~ 527 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC
Confidence 378999999884322000 2666666 99999999999998776667889999999999999998
Q ss_pred Ccc-CCccc-------cCCCCCCcEEeccCCCCccCCc-ccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCC
Q psy10289 153 ITS-LLDYN-------FKGMMNLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223 (497)
Q Consensus 153 l~~-~~~~~-------~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 223 (497)
+++ ..|.. +..+++|++|++++|.+..+|. ..|.++++|+.|++++|+++.+ | .|..+++|+.|++++|
T Consensus 528 lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~l-p-~~~~L~~L~~L~Ls~N 605 (876)
T 4ecn_A 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL-E-AFGTNVKLTDLKLDYN 605 (876)
T ss_dssp SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBC-C-CCCTTSEESEEECCSS
T ss_pred cccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccc-h-hhcCCCcceEEECcCC
Confidence 886 33443 3455699999999999998886 3588999999999999999966 4 7899999999999999
Q ss_pred CCCccChhhhcCCcc-ccEEEcCCCCCcccCcccccCCC--CccEEEccCCCCCccChhh---hc--CCccCceeeccCC
Q psy10289 224 DIVEINPEIFKDIQE-LKTFKCRSCGLENINPMMYSILA--DLIYLDLGYNQLKYLLADE---LE--DLKKLETLLLDGN 295 (497)
Q Consensus 224 ~i~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~---~~--~l~~L~~L~l~~n 295 (497)
.+..++ ..+.++++ |+.|++++|.++.++ ..+..+. +|+.|++++|.+.+..+.. +. .+++|+.|++++|
T Consensus 606 ~l~~lp-~~l~~l~~~L~~L~Ls~N~L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 606 QIEEIP-EDFCAFTDQVEGLGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp CCSCCC-TTSCEECTTCCEEECCSSCCCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred ccccch-HHHhhccccCCEEECcCCCCCcCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 999765 44788888 999999999999765 4555554 4999999999998754422 22 3458999999999
Q ss_pred cCCCcCccccCCCCCccEEEccCCcccccccccccCC-------CCCCEEECcCCCCCccCcccc-cccccCCCEEEcCC
Q psy10289 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNL-------TNLIELDISYNKLDRLEVASF-DPIENSLRDLKISG 367 (497)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~-------~~L~~L~l~~n~l~~~~~~~~-~~~~~~L~~L~ls~ 367 (497)
.+..+.+..+..+++|++|++++|.+..++...+... ++|++|++++|+++.++.... ..++. |+.|++++
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~-L~~L~Ls~ 762 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY-LSNMDVSY 762 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTT-CCEEECCS
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCC-cCEEEeCC
Confidence 9998766666788999999999999998877655533 399999999999997765443 26666 99999999
Q ss_pred CcCCCcchhhHhhcCCCCCEEecCC------CcCC-cCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCC
Q psy10289 368 NNIQLSDVKNVLDKLVKLKALSIAD------MNYT-DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSR 440 (497)
Q Consensus 368 n~i~~~~~~~~~~~~~~L~~L~l~~------n~i~-~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 440 (497)
|.++ .+|..+..+++|+.|++++ |.+. .+|. .|..+++|+.|+|++|++..++.. + .++|+.|||++
T Consensus 763 N~L~--~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-~l~~L~~L~~L~Ls~N~L~~Ip~~-l--~~~L~~LdLs~ 836 (876)
T 4ecn_A 763 NCFS--SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEK-L--TPQLYILDIAD 836 (876)
T ss_dssp SCCS--SCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCT-TGGGCSSCCEEECCSSCCCBCCSC-C--CSSSCEEECCS
T ss_pred CCCC--ccchhhhcCCCCCEEECCCCCCcccccccccChH-HHhcCCCCCEEECCCCCCCccCHh-h--cCCCCEEECCC
Confidence 9998 3688888999999999987 5555 4454 468899999999999999777665 4 37999999999
Q ss_pred CccccccCCCcc
Q psy10289 441 NKFKGFDEKSYI 452 (497)
Q Consensus 441 n~l~~~~~~~~~ 452 (497)
|++..++...+.
T Consensus 837 N~l~~i~~~~~~ 848 (876)
T 4ecn_A 837 NPNISIDVTSVC 848 (876)
T ss_dssp CTTCEEECGGGH
T ss_pred CCCCccChHHcc
Confidence 999998866544
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.9e-36 Score=289.55 Aligned_cols=309 Identities=24% Similarity=0.377 Sum_probs=268.0
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+..+++|++|+++++.++.++ .+..+++|++|++++|+++++.+ +.++++|++|++++|.++.++. |..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred cchhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCchH--HcCCCcC
Confidence 4567899999999999998875 48889999999999999998865 8999999999999999998863 8899999
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|++++|.++.+.+ +..+++|++|++++|......+. +..+++|+.|++++|.+..+++ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 999999999998844 88999999999999965444333 8889999999999999988765 778999999999999
Q ss_pred CCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcc
Q psy10289 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVA 351 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 351 (497)
.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++.+++ +..+++|++|++++|.++.+ .
T Consensus 188 ~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~ 259 (347)
T 4fmz_A 188 QIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--N 259 (347)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--G
T ss_pred ccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--h
Confidence 9987644 8889999999999999988654 7788999999999999988876 88999999999999999886 3
Q ss_pred cccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCC
Q psy10289 352 SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431 (497)
Q Consensus 352 ~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~ 431 (497)
.+..+++ |+.|++++|.++.. ..+..+++|+.|++++|+++.++...|..+++|+.|++++|+++++++ +..++
T Consensus 260 ~~~~l~~-L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 260 AVKDLTK-LKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp GGTTCTT-CCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred hHhcCCC-cCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 5666766 99999999998743 457889999999999999998888888999999999999999999877 77899
Q ss_pred CCCEEECCCCcccc
Q psy10289 432 KLTHLDLSRNKFKG 445 (497)
Q Consensus 432 ~L~~L~l~~n~l~~ 445 (497)
+|++|++++|+++.
T Consensus 334 ~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 334 KMDSADFANQVIKK 347 (347)
T ss_dssp TCSEESSSCC----
T ss_pred ccceeehhhhcccC
Confidence 99999999999863
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-36 Score=300.03 Aligned_cols=313 Identities=24% Similarity=0.368 Sum_probs=256.2
Q ss_pred CCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEE
Q psy10289 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVL 194 (497)
Q Consensus 115 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 194 (497)
.+++++.|+++++.++.++...|.++++|++|++++|+++.+.+..|.++++|++|++++|.++.+++..|+++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 35788888998888888887778888889999999888888887888888899999999988888888888888889999
Q ss_pred eccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC
Q psy10289 195 SLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274 (497)
Q Consensus 195 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (497)
++++|+++.+.+..|..+++|++|++++|.+..+++..+.++++|+.|++++|.++.++ +..+++|+.+++++|.+.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~ 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccccc
Confidence 99998888886666788888999999998888888888888888999999888888764 345678888898888876
Q ss_pred ccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccc
Q psy10289 275 YLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354 (497)
Q Consensus 275 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 354 (497)
+. ...++|++|++++|.+..... ...++|++|++++|.+++. ..+..+++|++|++++|.+.++.+..+.
T Consensus 200 ~~-----~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (390)
T 3o6n_A 200 TL-----AIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV 269 (390)
T ss_dssp EE-----ECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGT
T ss_pred cc-----CCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcc
Confidence 53 344678888998888877633 2346888999999888776 3477888999999999988888778888
Q ss_pred ccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCC
Q psy10289 355 PIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLT 434 (497)
Q Consensus 355 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~ 434 (497)
.++. |+.|++++|.++ .++..+..+++|+.|++++|+++.+|..+ ..+++|+.|++++|+++.++ +..+++|+
T Consensus 270 ~l~~-L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~---~~~~~~L~ 342 (390)
T 3o6n_A 270 KMQR-LERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK---LSTHHTLK 342 (390)
T ss_dssp TCSS-CCEEECCSSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC---CCTTCCCS
T ss_pred cccc-CCEEECCCCcCc--ccCcccCCCCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC---chhhccCC
Confidence 8776 999999998876 34555667888999999999888888764 56788999999999988875 55678899
Q ss_pred EEECCCCcccccc
Q psy10289 435 HLDLSRNKFKGFD 447 (497)
Q Consensus 435 ~L~l~~n~l~~~~ 447 (497)
+|++++|++++-.
T Consensus 343 ~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 343 NLTLSHNDWDCNS 355 (390)
T ss_dssp EEECCSSCEEHHH
T ss_pred EEEcCCCCccchh
Confidence 9999999888744
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3e-36 Score=316.46 Aligned_cols=399 Identities=21% Similarity=0.249 Sum_probs=258.8
Q ss_pred ccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCCC--CCC
Q psy10289 10 KLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIP--IGQ 87 (497)
Q Consensus 10 ~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~--~~~ 87 (497)
++++||||+|+|+.+++.+|.++++|++|+ .....+..+++ +..
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~----------------------------------Ls~N~i~~i~~~~f~~ 98 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLD----------------------------------LSRCEIQTIEDGAYQS 98 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEE----------------------------------CTTCCCCEECTTTTTT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEE----------------------------------CCCCcCCCcChhHhcC
Confidence 799999999999999999999999888763 11111111110 111
Q ss_pred CCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCC-ccccCCCCC
Q psy10289 88 MDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLL-DYNFKGMMN 166 (497)
Q Consensus 88 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~ 166 (497)
+ ..+++|+++.+. .....+.+|.++++|++|++++|.++.+++.+|+++++|++|++++|.++.+. +..+..+++
T Consensus 99 L-~~L~~L~Ls~N~---l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 174 (635)
T 4g8a_A 99 L-SHLSTLILTGNP---IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 174 (635)
T ss_dssp C-TTCCEEECTTCC---CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTT
T ss_pred C-CCCCEEEccCCc---CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchh
Confidence 1 245566655541 11112235666666666666666666666556666666666666666665432 344555666
Q ss_pred CcEEeccCCCCccCCcccccCCcCC----cEEeccCCCCCCCChhhh------------------------cCCCCCCEE
Q psy10289 167 LQELYLDFNKIESIPSSVFMHLSDL----RVLSLAHNRISKLAPRLF------------------------LKLSKLKSL 218 (497)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L----~~L~l~~n~i~~~~~~~~------------------------~~l~~L~~L 218 (497)
|++|++++|.++.+++..|..+.++ ..++++.|.+..+.+..+ ..+..++..
T Consensus 175 L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~ 254 (635)
T 4g8a_A 175 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVH 254 (635)
T ss_dssp CCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEE
T ss_pred hhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccc
Confidence 6666666666666555544443332 245555554443322111 111111111
Q ss_pred e---------------------------------------------------------ccCCCCCccChhhhcCCccccE
Q psy10289 219 D---------------------------------------------------------LSYNDIVEINPEIFKDIQELKT 241 (497)
Q Consensus 219 ~---------------------------------------------------------l~~n~i~~~~~~~~~~~~~L~~ 241 (497)
. +..+.+..+ ..+.....++.
T Consensus 255 ~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~ 332 (635)
T 4g8a_A 255 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQH 332 (635)
T ss_dssp EEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSE
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhh
Confidence 1 111100000 01222334555
Q ss_pred EEcCCCCCcccCcc-------------------cccCCCCccEEEccCCCCCcc--Ch----------------------
Q psy10289 242 FKCRSCGLENINPM-------------------MYSILADLIYLDLGYNQLKYL--LA---------------------- 278 (497)
Q Consensus 242 L~l~~~~l~~~~~~-------------------~~~~l~~L~~L~l~~n~l~~~--~~---------------------- 278 (497)
|++.++.+..+... ....+++|+.+++++|.+... .+
T Consensus 333 L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~ 412 (635)
T 4g8a_A 333 LELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM 412 (635)
T ss_dssp EEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE
T ss_pred hhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc
Confidence 55555544332221 122356777777777766421 11
Q ss_pred -hhhcCCccCceeeccCCcCCCcC-ccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCC-CccCcccccc
Q psy10289 279 -DELEDLKKLETLLLDGNHFPVIL-EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL-DRLEVASFDP 355 (497)
Q Consensus 279 -~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~~ 355 (497)
..+..+++|+.+++..+...... ...+..+++++.+++++|.+....+..+..+++++.|++++|.+ ..+.+..+..
T Consensus 413 ~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~ 492 (635)
T 4g8a_A 413 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 492 (635)
T ss_dssp CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh
Confidence 23445667777777766554433 34577889999999999999999888899999999999999974 4566777888
Q ss_pred cccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccC-CCCC
Q psy10289 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN-IKLT 434 (497)
Q Consensus 356 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~-~~L~ 434 (497)
++. |+.|++++|.++ ...+..+..+++|+.|++++|+++.+++..|..+++|++|++++|+++++++..+..+ ++|+
T Consensus 493 l~~-L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~ 570 (635)
T 4g8a_A 493 LRN-LTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA 570 (635)
T ss_dssp CTT-CCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCC
T ss_pred ccc-cCEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCC
Confidence 876 999999999987 3346788999999999999999999999999999999999999999999999999887 6899
Q ss_pred EEECCCCccccccCCC
Q psy10289 435 HLDLSRNKFKGFDEKS 450 (497)
Q Consensus 435 ~L~l~~n~l~~~~~~~ 450 (497)
+|++++|++++-.+..
T Consensus 571 ~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 571 FLNLTQNDFACTCEHQ 586 (635)
T ss_dssp EEECTTCCBCCSGGGH
T ss_pred EEEeeCCCCcccCCcH
Confidence 9999999999866543
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.2e-35 Score=297.83 Aligned_cols=342 Identities=20% Similarity=0.297 Sum_probs=291.1
Q ss_pred CCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEE
Q psy10289 91 GTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170 (497)
Q Consensus 91 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 170 (497)
.++.+++..+.. ...+.+..+++|++|++++|.++.+++ +.++++|++|++++|+++++.+ +.++++|++|
T Consensus 47 ~l~~L~l~~~~i-----~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 47 QVTTLQADRLGI-----KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp TCCEEECCSSCC-----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred cccEEecCCCCC-----ccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 466777665521 112357889999999999999999875 8899999999999999998865 8999999999
Q ss_pred eccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 171 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++++|.++.+++ +..+++|++|++++|.+..+. .+..+++|++|+++ +.+..+.+ +.++++|+.|++++|.++
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCC
Confidence 999999999876 789999999999999998873 48899999999997 45555543 889999999999999998
Q ss_pred ccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccccc
Q psy10289 251 NINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT 330 (497)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 330 (497)
.++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +.
T Consensus 191 ~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~ 262 (466)
T 1o6v_A 191 DIS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LS 262 (466)
T ss_dssp CCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCh--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hh
Confidence 774 37789999999999999987655 77899999999999999875 357789999999999999988766 88
Q ss_pred CCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCc
Q psy10289 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQ 410 (497)
Q Consensus 331 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~ 410 (497)
.+++|++|++++|.+.++++ +..++. |+.|++++|.++. ++. +..+++|+.|++++|+++.+++ +..+++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~L~~n~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP--LAGLTA-LTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG--GTTCTT-CSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred cCCCCCEEECCCCccCcccc--ccCCCc-cCeEEcCCCcccC--chh-hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 99999999999999998765 667776 9999999999873 333 7889999999999999998876 67889999
Q ss_pred EEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchhHHHHhhhhhH
Q psy10289 411 FLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIHKAAKNSFA 468 (497)
Q Consensus 411 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~n~~~ 468 (497)
.|++++|+++++. .+..+++|++|++++|+++++++ ...+..++. +++++|+++
T Consensus 335 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~-L~l~~n~~~ 388 (466)
T 1o6v_A 335 RLFFYNNKVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQ-LGLNDQAWT 388 (466)
T ss_dssp EEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCE-EECCCEEEE
T ss_pred EeECCCCccCCch--hhccCCCCCEEeCCCCccCccch-hhcCCCCCE-EeccCCccc
Confidence 9999999999983 57889999999999999999877 444444433 477777776
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.4e-35 Score=287.72 Aligned_cols=313 Identities=21% Similarity=0.252 Sum_probs=273.5
Q ss_pred CCCceEEeecCCCCCCccccC-ccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCc
Q psy10289 90 LGTEVLKIVPSEENPNHLTIG-PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168 (497)
Q Consensus 90 ~~~~~l~l~~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 168 (497)
..++.+++..+. ...++ ..|.++++|++|++++|.++.+++..|.++++|++|++++|+++++.+..|.++++|+
T Consensus 45 ~~l~~l~l~~~~----l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 45 NNQKIVTFKNST----MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp CCCSEEEEESCE----ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCceEEEecCCc----hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 468888887762 22233 3588999999999999999999988999999999999999999999999999999999
Q ss_pred EEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCC
Q psy10289 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCG 248 (497)
Q Consensus 169 ~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~ 248 (497)
+|++++|.++.+|+..|.++++|++|++++|+++.+.+..|..+++|++|++++|.++.++ +..+++|+.+++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 9999999999999998999999999999999999998888999999999999999999875 4567899999999998
Q ss_pred CcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccc
Q psy10289 249 LENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA 328 (497)
Q Consensus 249 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 328 (497)
++.+. ..++|++|++++|.+..... ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.++.+..
T Consensus 198 l~~~~-----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LSTLA-----IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSEEE-----CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccccC-----CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 88653 35689999999999987633 2357899999999999875 46788999999999999999998888
Q ss_pred ccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCc
Q psy10289 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408 (497)
Q Consensus 329 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~ 408 (497)
+..+++|++|++++|+++.++.. +..++. |+.|++++|.++ .++..+..+++|+.|++++|+++.++ +..+++
T Consensus 268 ~~~l~~L~~L~L~~n~l~~~~~~-~~~l~~-L~~L~L~~n~l~--~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~ 340 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVALNLY-GQPIPT-LKVLDLSHNHLL--HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT 340 (390)
T ss_dssp GTTCSSCCEEECCSSCCCEEECS-SSCCTT-CCEEECCSSCCC--CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC
T ss_pred ccccccCCEEECCCCcCcccCcc-cCCCCC-CCEEECCCCcce--ecCccccccCcCCEEECCCCccceeC---chhhcc
Confidence 99999999999999999987543 345665 999999999987 56677888999999999999999887 467799
Q ss_pred CcEEeCcCCCCcccchhh
Q psy10289 409 LQFLNLSGNNLQDIHNLL 426 (497)
Q Consensus 409 L~~L~Ls~n~l~~~~~~~ 426 (497)
|+.|++++|+++......
T Consensus 341 L~~L~l~~N~~~~~~~~~ 358 (390)
T 3o6n_A 341 LKNLTLSHNDWDCNSLRA 358 (390)
T ss_dssp CSEEECCSSCEEHHHHHH
T ss_pred CCEEEcCCCCccchhHHH
Confidence 999999999998755433
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-35 Score=306.90 Aligned_cols=310 Identities=25% Similarity=0.373 Sum_probs=180.0
Q ss_pred CCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEe
Q psy10289 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 195 (497)
+++++.++++++.++.+++..|.++++|++|++++|.++++.+..|.++++|++|++++|.++.+++..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 34556666666666666555555566666666666666665555566666666666666666666655556666666666
Q ss_pred ccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCc
Q psy10289 196 LAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275 (497)
Q Consensus 196 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (497)
+++|.++.+++..|..+++|++|++++|.+.++++..|.++++|+.|++++|.++.++ +..+++|+.|++++|.+.+
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc
Confidence 6666666555555556666666666666666665555666666666666666655543 2334556666666665543
Q ss_pred cChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccc
Q psy10289 276 LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355 (497)
Q Consensus 276 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 355 (497)
. ...++|+.|++++|.+..+.+.. .++|+.|++++|.+++. ..+..+++|++|++++|.+.++.+..+..
T Consensus 207 l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 207 L-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp E-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred c-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 2 23345666666666555443222 24566666666665543 23555666666666666666665555555
Q ss_pred cccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCE
Q psy10289 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTH 435 (497)
Q Consensus 356 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~ 435 (497)
++. |+.|++++|.++ .++..+..+++|+.|++++|.++.+|..+ ..+++|+.|++++|++++++ +..+++|+.
T Consensus 277 l~~-L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~ 349 (597)
T 3oja_B 277 MQR-LERLYISNNRLV--ALNLYGQPIPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK---LSTHHTLKN 349 (597)
T ss_dssp CSS-CCEEECTTSCCC--EEECSSSCCTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC---CCTTCCCSE
T ss_pred ccC-CCEEECCCCCCC--CCCcccccCCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC---hhhcCCCCE
Confidence 554 666666666555 23444445566666666666666665543 44566666666666666554 334556666
Q ss_pred EECCCCcccc
Q psy10289 436 LDLSRNKFKG 445 (497)
Q Consensus 436 L~l~~n~l~~ 445 (497)
|++++|++++
T Consensus 350 L~l~~N~~~~ 359 (597)
T 3oja_B 350 LTLSHNDWDC 359 (597)
T ss_dssp EECCSSCEEH
T ss_pred EEeeCCCCCC
Confidence 6666666554
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-33 Score=282.66 Aligned_cols=383 Identities=19% Similarity=0.189 Sum_probs=243.7
Q ss_pred eccccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCC-----ceeccCCCCcEEEEecCCCCCC
Q psy10289 7 FMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYM-----CECALDDRGRYEIVCRRGDMAN 81 (497)
Q Consensus 7 ~~~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~-----~~c~~~~~~~~~~~c~~~~~~~ 81 (497)
..++|++|++++|.++.+ |..|+++++|++|+.....+..........+... ..|.. .....+++...++..
T Consensus 9 ~~~~L~~L~l~~n~l~~i-P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~--~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD--RQAHELELNNLGLSS 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH--HTCSEEECTTSCCSC
T ss_pred ccccchhhhcccCchhhC-ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc--cCCCEEEecCCcccc
Confidence 357899999999999777 5568999999988744433322111111111110 01211 112356777777766
Q ss_pred CCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCcccc
Q psy10289 82 PIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNF 161 (497)
Q Consensus 82 ~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 161 (497)
.+. ++..++.++++.+.... ++. ..++|++|++++|.++.++.. .++|++|++++|++++++ .|
T Consensus 86 lp~---~~~~L~~L~l~~n~l~~----lp~---~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~lp--~~ 149 (454)
T 1jl5_A 86 LPE---LPPHLESLVASCNSLTE----LPE---LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEKLP--EL 149 (454)
T ss_dssp CCS---CCTTCSEEECCSSCCSS----CCC---CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSSCC--CC
T ss_pred CCC---CcCCCCEEEccCCcCCc----ccc---ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCCCc--cc
Confidence 553 46788888887763211 222 247899999999988876532 268999999999998864 48
Q ss_pred CCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccE
Q psy10289 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241 (497)
Q Consensus 162 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~ 241 (497)
.++++|++|++++|.++.+|.. ..+|++|++++|+++++ + .+..+++|++|++++|.+.+++.. .++|+.
T Consensus 150 ~~l~~L~~L~l~~N~l~~lp~~----~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLPDL----PLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCE
T ss_pred CCCCCCCEEECCCCcCcccCCC----cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCCCC----cCcccE
Confidence 8899999999999988887753 25899999999998886 3 588889999999999988876542 358899
Q ss_pred EEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcc
Q psy10289 242 FKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321 (497)
Q Consensus 242 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 321 (497)
|++++|.++.++. +..+++|++|++++|.+.+++. ..++|++|++++|.+.++.. .+++|++|++++|.+
T Consensus 220 L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred EECcCCcCCcccc--cCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCc----ccCcCCEEECcCCcc
Confidence 9999998887663 7788899999999998887532 24788999999998887432 246889999999988
Q ss_pred cccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcc
Q psy10289 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKG 401 (497)
Q Consensus 322 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~ 401 (497)
++++.. .++|++|++++|++++++ ..+.+|+.|++++|.++. ++. .+++|+.|++++|+++.+|.
T Consensus 290 ~~l~~~----~~~L~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~--lp~---~~~~L~~L~L~~N~l~~lp~- 354 (454)
T 1jl5_A 290 SGLSEL----PPNLYYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE--LPA---LPPRLERLIASFNHLAEVPE- 354 (454)
T ss_dssp SEESCC----CTTCCEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC--CCC---CCTTCCEEECCSSCCSCCCC-
T ss_pred CcccCc----CCcCCEEECcCCcCCccc-----CCcCcCCEEECCCCcccc--ccc---cCCcCCEEECCCCccccccc-
Confidence 876431 268899999999888654 233358999999998772 343 25789999999999888887
Q ss_pred cccCCCcCcEEeCcCCCCccc--chhhhccC-------------CCCCEEECCCCccccc
Q psy10289 402 LFKMNPHLQFLNLSGNNLQDI--HNLLYQSN-------------IKLTHLDLSRNKFKGF 446 (497)
Q Consensus 402 ~~~~~~~L~~L~Ls~n~l~~~--~~~~~~~~-------------~~L~~L~l~~n~l~~~ 446 (497)
.+++|+.|++++|+++++ .+..+..+ ++|+.|++++|+++++
T Consensus 355 ---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~ 411 (454)
T 1jl5_A 355 ---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF 411 (454)
T ss_dssp ---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-------------------------
T ss_pred ---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence 357899999999998883 34555555 7889999999988864
No 36
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-33 Score=271.57 Aligned_cols=302 Identities=19% Similarity=0.321 Sum_probs=261.5
Q ss_pred CCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEE
Q psy10289 91 GTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170 (497)
Q Consensus 91 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 170 (497)
.++.+++.++.. ...+.+..+++|++|++++|.++++++ +.++++|++|++++|.++.+ .++.++++|++|
T Consensus 45 ~L~~L~l~~~~i-----~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 45 SITKLVVAGEKV-----ASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp TCSEEECCSSCC-----CCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccEEEEeCCcc-----ccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 577888876622 222358889999999999999998865 88999999999999999987 368999999999
Q ss_pred eccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 171 ~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++++|.+..+++ +..+++|++|++++|...... ..+..+++|++|++++|.+..+++ +..+++|+.|++++|.+.
T Consensus 116 ~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 999999999876 789999999999999655443 348899999999999999988865 888999999999999999
Q ss_pred ccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccccc
Q psy10289 251 NINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT 330 (497)
Q Consensus 251 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 330 (497)
.+++ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++.++ .+.
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~ 262 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVK 262 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGT
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHh
Confidence 8766 7789999999999999987644 8899999999999999988755 888999999999999998873 488
Q ss_pred CCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCc
Q psy10289 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQ 410 (497)
Q Consensus 331 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~ 410 (497)
.+++|++|++++|.+++++ .+..++. |+.|++++|.++ ...+..+..+++|+.|++++|.++.+++ +..+++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~--~~~~l~~-L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS--VLNNLSQ-LNSLFLNNNQLG-NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG--GGGGCTT-CSEEECCSSCCC-GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred cCCCcCEEEccCCccCCCh--hhcCCCC-CCEEECcCCcCC-CcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 9999999999999999873 4667776 999999999987 3456778999999999999999999887 67889999
Q ss_pred EEeCcCCCCc
Q psy10289 411 FLNLSGNNLQ 420 (497)
Q Consensus 411 ~L~Ls~n~l~ 420 (497)
.|++++|+++
T Consensus 337 ~L~l~~N~i~ 346 (347)
T 4fmz_A 337 SADFANQVIK 346 (347)
T ss_dssp EESSSCC---
T ss_pred eeehhhhccc
Confidence 9999999886
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.3e-34 Score=273.78 Aligned_cols=287 Identities=21% Similarity=0.287 Sum_probs=188.5
Q ss_pred CCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccC
Q psy10289 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222 (497)
Q Consensus 143 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 222 (497)
++.++++++.++.++... .++|++|++++|.++.+++..|.++++|++|++++|+++.+.+..|..+++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 444444444444443221 13444555555555444444444555555555555555544444455555555555555
Q ss_pred CCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC--ccChhhhcCCccCceeeccCCcCCCc
Q psy10289 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK--YLLADELEDLKKLETLLLDGNHFPVI 300 (497)
Q Consensus 223 n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~ 300 (497)
|.++.++...+ ++|+.|++++|.++.+++..+..+++|++|++++|.++ +..+..+..+ +|++|++++|.+.++
T Consensus 112 n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 NHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp SCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred CcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 55554443322 45555555555555555555555666666666666654 2445556666 777777777777664
Q ss_pred CccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhh
Q psy10289 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380 (497)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 380 (497)
.... .++|++|++++|.+..+.+..+..+++|++|++++|++.++++..+..++. |+.|++++|.++ .++..+.
T Consensus 188 ~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~--~lp~~l~ 261 (332)
T 2ft3_A 188 PKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPT-LRELHLDNNKLS--RVPAGLP 261 (332)
T ss_dssp CSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTT-CCEEECCSSCCC--BCCTTGG
T ss_pred Cccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCC-CCEEECCCCcCe--ecChhhh
Confidence 3322 257888888888888887777888888888888888888887777777776 889999988877 5677788
Q ss_pred cCCCCCEEecCCCcCCcCCcccccC------CCcCcEEeCcCCCCc--ccchhhhccCCCCCEEECCCCc
Q psy10289 381 KLVKLKALSIADMNYTDIPKGLFKM------NPHLQFLNLSGNNLQ--DIHNLLYQSNIKLTHLDLSRNK 442 (497)
Q Consensus 381 ~~~~L~~L~l~~n~i~~l~~~~~~~------~~~L~~L~Ls~n~l~--~~~~~~~~~~~~L~~L~l~~n~ 442 (497)
.+++|+.|++++|+++.++...|.. .++|+.|++++|++. ++.+..|..+++|+.+++++|+
T Consensus 262 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 262 DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 8899999999999999888877765 367999999999988 6788889999999999999884
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=3.8e-33 Score=268.63 Aligned_cols=306 Identities=21% Similarity=0.301 Sum_probs=243.4
Q ss_pred cCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCc
Q psy10289 52 ASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPA 131 (497)
Q Consensus 52 ~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 131 (497)
....||..|.|... .+.|....+..+|. .+ .+++++|++++|.++.
T Consensus 21 ~~~~cp~~c~c~l~-----~l~~~~~~l~~lp~---------------------------~~--~~~l~~L~L~~n~i~~ 66 (330)
T 1xku_A 21 MGPVCPFRCQCHLR-----VVQCSDLGLEKVPK---------------------------DL--PPDTALLDLQNNKITE 66 (330)
T ss_dssp -CCCCCTTCEEETT-----EEECTTSCCCSCCC---------------------------SC--CTTCCEEECCSSCCCC
T ss_pred ccCCCCCCCcCCCe-----EEEecCCCccccCc---------------------------cC--CCCCeEEECCCCcCCE
Confidence 34679999999764 57777666554431 11 1578999999999999
Q ss_pred cCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcC
Q psy10289 132 IGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK 211 (497)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 211 (497)
+++..|.++++|++|++++|+++++.+..|.++++|++|++++|.++.+|...+ ++|++|++++|.++.+.+..|..
T Consensus 67 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~ 143 (330)
T 1xku_A 67 IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNG 143 (330)
T ss_dssp BCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTT
T ss_pred eChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcC
Confidence 988889999999999999999999988899999999999999999999987654 78999999999999998888999
Q ss_pred CCCCCEEeccCCCCCc--cChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCce
Q psy10289 212 LSKLKSLDLSYNDIVE--INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLET 289 (497)
Q Consensus 212 l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 289 (497)
+++|++|++++|.+.. +.+..+.++++|+.|++++|.++.++...+ ++|++|++++|.+.+..+..+..+++|++
T Consensus 144 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 220 (330)
T 1xku_A 144 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAK 220 (330)
T ss_dssp CTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCE
T ss_pred CccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCE
Confidence 9999999999999864 667788899999999999999998776543 78999999999999888888999999999
Q ss_pred eeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCc
Q psy10289 290 LLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369 (497)
Q Consensus 290 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~ 369 (497)
|++++|.+.+..+..+..+++|++|++++|.++.++. .+..+++|++|++++|+++.++...|.....
T Consensus 221 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~-~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~----------- 288 (330)
T 1xku_A 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGY----------- 288 (330)
T ss_dssp EECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSC-----------
T ss_pred EECCCCcCceeChhhccCCCCCCEEECCCCcCccCCh-hhccCCCcCEEECCCCcCCccChhhcCCccc-----------
Confidence 9999999988877778888899999999999887654 4778899999999999988887776643310
Q ss_pred CCCcchhhHhhcCCCCCEEecCCCcCC--cCCcccccCCCcCcEEeCcCCC
Q psy10289 370 IQLSDVKNVLDKLVKLKALSIADMNYT--DIPKGLFKMNPHLQFLNLSGNN 418 (497)
Q Consensus 370 i~~~~~~~~~~~~~~L~~L~l~~n~i~--~l~~~~~~~~~~L~~L~Ls~n~ 418 (497)
....+.++.|++++|.+. .+++..|..+++++.+++++|+
T Consensus 289 ---------~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 289 ---------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---------CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---------ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 001234445555555443 3555567777777777777764
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.9e-33 Score=270.62 Aligned_cols=289 Identities=24% Similarity=0.356 Sum_probs=189.5
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
+++.++++++.++.++.. + .+++++|++++|+++++.+..|.++++|++|++++|.++.+++..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 455555555555554422 1 1345555555555555544455555555555555555555544445555555555555
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCc--
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY-- 275 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-- 275 (497)
+|.++.+... +. ++|++|++++|.+.++++. .+..+++|++|++++|.+..
T Consensus 109 ~n~l~~l~~~-~~--~~L~~L~l~~n~l~~~~~~------------------------~~~~l~~L~~L~l~~n~l~~~~ 161 (330)
T 1xku_A 109 KNQLKELPEK-MP--KTLQELRVHENEITKVRKS------------------------VFNGLNQMIVVELGTNPLKSSG 161 (330)
T ss_dssp SSCCSBCCSS-CC--TTCCEEECCSSCCCBBCHH------------------------HHTTCTTCCEEECCSSCCCGGG
T ss_pred CCcCCccChh-hc--ccccEEECCCCcccccCHh------------------------HhcCCccccEEECCCCcCCccC
Confidence 5555444221 11 3444555555444444444 44445555555555555532
Q ss_pred cChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccc
Q psy10289 276 LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355 (497)
Q Consensus 276 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 355 (497)
..+..+.++++|++|++++|.+..+.... .++|++|++++|.+.++.+..+..+++|++|++++|.++++++..+..
T Consensus 162 ~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 162 IENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp BCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred cChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 44455666677777777777666543322 267888888888888887777888889999999999888888777877
Q ss_pred cccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccC------CCcCcEEeCcCCCCcc--cchhhh
Q psy10289 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKM------NPHLQFLNLSGNNLQD--IHNLLY 427 (497)
Q Consensus 356 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~------~~~L~~L~Ls~n~l~~--~~~~~~ 427 (497)
++. |+.|++++|.++ .++..+..+++|+.|++++|+++.++...|.. .+.++.|++++|++.. +.+..|
T Consensus 239 l~~-L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 239 TPH-LRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp STT-CCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred CCC-CCEEECCCCcCc--cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 776 999999999887 56777888899999999999999998877754 3789999999999875 667889
Q ss_pred ccCCCCCEEECCCCc
Q psy10289 428 QSNIKLTHLDLSRNK 442 (497)
Q Consensus 428 ~~~~~L~~L~l~~n~ 442 (497)
..+++++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 889999999999985
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=299.53 Aligned_cols=317 Identities=20% Similarity=0.221 Sum_probs=278.6
Q ss_pred CCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEE
Q psy10289 139 GVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSL 218 (497)
Q Consensus 139 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L 218 (497)
.+++++.+++++|.+..+++..|.++++|++|++++|.+..+++..|..+++|++|++++|.++++.+..|.++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 35789999999999999988889999999999999999999998889999999999999999999988889999999999
Q ss_pred eccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCC
Q psy10289 219 DLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298 (497)
Q Consensus 219 ~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 298 (497)
++++|.++.+++..|.++++|+.|++++|.++.+++..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+.
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 99999999999998999999999999999999999999999999999999999999864 556788999999999887
Q ss_pred CcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhH
Q psy10289 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378 (497)
Q Consensus 299 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~ 378 (497)
+. ...++|++|++++|.+..++... .++|+.|++++|.+++. ..+..++. |+.|++++|.++ ...+..
T Consensus 206 ~l-----~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~-L~~L~Ls~N~l~-~~~~~~ 273 (597)
T 3oja_B 206 TL-----AIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPG-LVEVDLSYNELE-KIMYHP 273 (597)
T ss_dssp EE-----ECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTT-CSEEECCSSCCC-EEESGG
T ss_pred cc-----cCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCC-CCEEECCCCccC-CCCHHH
Confidence 64 34568999999999998876543 37899999999999874 56677776 999999999987 344678
Q ss_pred hhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCCcccCCchh
Q psy10289 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKN 458 (497)
Q Consensus 379 ~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~ 458 (497)
+..+++|+.|++++|.++.+|... ..+++|+.|+|++|+++.+++. +..+++|+.|++++|+++.++... +..+..
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~i~~~-~~~l~~L~~L~L~~N~l~~~~~~~--~~~L~~ 349 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERN-QPQFDRLENLYLDHNSIVTLKLST--HHTLKN 349 (597)
T ss_dssp GTTCSSCCEEECTTSCCCEEECSS-SCCTTCCEEECCSSCCCCCGGG-HHHHTTCSEEECCSSCCCCCCCCT--TCCCSE
T ss_pred hcCccCCCEEECCCCCCCCCCccc-ccCCCCcEEECCCCCCCccCcc-cccCCCCCEEECCCCCCCCcChhh--cCCCCE
Confidence 899999999999999999988754 6789999999999999987654 678899999999999999987443 334433
Q ss_pred HHHHhhhhhHhhhhccC
Q psy10289 459 IHKAAKNSFALQSSMGK 475 (497)
Q Consensus 459 ~~~~~~n~~~~~~~~~~ 475 (497)
+++++|+|.|+|..++
T Consensus 350 -L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 350 -LTLSHNDWDCNSLRAL 365 (597)
T ss_dssp -EECCSSCEEHHHHHHH
T ss_pred -EEeeCCCCCChhHHHH
Confidence 5899999999885543
No 41
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-33 Score=279.61 Aligned_cols=190 Identities=21% Similarity=0.244 Sum_probs=98.6
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+..+++|++|++++|.++.++ +..+++|++|++++|++++++ +.++++|++|++++|.++.++ ++.+++|
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L 129 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLL 129 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTC
T ss_pred hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec---CCCCCcC
Confidence 4555555555555555555542 445555555555555555541 455555555555555555543 4455555
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCC-CCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND-IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 270 (497)
++|++++|+++++ + +..+++|++|++++|. +..+ .+..+++|+.|++++|.++.++ +..+++|+.|++++
T Consensus 130 ~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 130 TYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDT 200 (457)
T ss_dssp CEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCS
T ss_pred CEEECCCCcccee-c--cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcC
Confidence 5555555555554 1 4455555555555552 2222 1444555555555555555543 34455555555555
Q ss_pred CCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccc
Q psy10289 271 NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325 (497)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 325 (497)
|.+++. .+..+++|+.|++++|.+.++ | +..+++|++|++++|++++++
T Consensus 201 N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 201 NNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELD 249 (457)
T ss_dssp SCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC
T ss_pred CcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcC
Confidence 555543 244555555555555555553 2 445555555555555555543
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=7.4e-33 Score=266.76 Aligned_cols=306 Identities=23% Similarity=0.338 Sum_probs=235.1
Q ss_pred ccCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCC
Q psy10289 51 SASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130 (497)
Q Consensus 51 ~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 130 (497)
.....||..|.|... .+.|....+..+| ..+ .+++++|++++|.++
T Consensus 22 ~~~~~cp~~c~c~l~-----~l~~~~~~l~~ip---------------------------~~~--~~~l~~L~l~~n~i~ 67 (332)
T 2ft3_A 22 TYSAMCPFGCHCHLR-----VVQCSDLGLKAVP---------------------------KEI--SPDTTLLDLQNNDIS 67 (332)
T ss_dssp ---CCCCSSCEEETT-----EEECCSSCCSSCC---------------------------SCC--CTTCCEEECCSSCCC
T ss_pred cccCCCCCCCcccCC-----EEECCCCCccccC---------------------------CCC--CCCCeEEECCCCcCC
Confidence 445679998988754 5677666554433 111 257899999999999
Q ss_pred ccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhc
Q psy10289 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFL 210 (497)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 210 (497)
.+++..|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+|...+ ++|++|++++|+++.+.+..|.
T Consensus 68 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~ 144 (332)
T 2ft3_A 68 ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFS 144 (332)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGS
T ss_pred ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhC
Confidence 9988889999999999999999999988899999999999999999999987654 7899999999999988777889
Q ss_pred CCCCCCEEeccCCCCCc--cChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCc
Q psy10289 211 KLSKLKSLDLSYNDIVE--INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE 288 (497)
Q Consensus 211 ~l~~L~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 288 (497)
.+++|++|++++|.++. +.+..+..+ +|+.|++++|.++.++...+ ++|++|++++|.+.+..+..+..+++|+
T Consensus 145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~ 220 (332)
T 2ft3_A 145 GLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLY 220 (332)
T ss_dssp SCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred CCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence 99999999999999864 666777777 89999999999888766443 6888889999988888778888888889
Q ss_pred eeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCC
Q psy10289 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368 (497)
Q Consensus 289 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 368 (497)
+|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|++|++++|+++.++...|.....
T Consensus 221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~---------- 289 (332)
T 2ft3_A 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCPVGF---------- 289 (332)
T ss_dssp CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSCSSC----------
T ss_pred EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHcccccc----------
Confidence 999988888887777788888888888888888866553 777888888888888888877766654310
Q ss_pred cCCCcchhhHhhcCCCCCEEecCCCcCC--cCCcccccCCCcCcEEeCcCCC
Q psy10289 369 NIQLSDVKNVLDKLVKLKALSIADMNYT--DIPKGLFKMNPHLQFLNLSGNN 418 (497)
Q Consensus 369 ~i~~~~~~~~~~~~~~L~~L~l~~n~i~--~l~~~~~~~~~~L~~L~Ls~n~ 418 (497)
. ....+|+.|++++|.+. .+++..|..+++|+.+++++|+
T Consensus 290 --~--------~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 290 --G--------VKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp --C--------SSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred --c--------cccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 0 01234455555555444 4555556666777777776653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.9e-33 Score=278.00 Aligned_cols=342 Identities=20% Similarity=0.207 Sum_probs=212.1
Q ss_pred eeeeccccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHHHhccccCCCCCCCceeccCCCCcEEEEecCCCCCCCC
Q psy10289 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPI 83 (497)
Q Consensus 4 ~~~~~~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~ 83 (497)
+++.+++|++||+++|.|+.++ .|..+++|+.|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L--------------------------------------------- 69 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKL--------------------------------------------- 69 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEE---------------------------------------------
T ss_pred ChhHcCCCCEEEccCCCcccCh--hhcccCCCCEE---------------------------------------------
Confidence 4567899999999999998874 46666655543
Q ss_pred CCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCC
Q psy10289 84 PIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKG 163 (497)
Q Consensus 84 ~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 163 (497)
+++.+... . + .+.++++|++|++++|.++.++ +.++++|++|++++|++++++ +..
T Consensus 70 ------------~Ls~n~l~--~--~--~~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~ 125 (457)
T 3bz5_A 70 ------------ICTSNNIT--T--L--DLSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQ 125 (457)
T ss_dssp ------------ECCSSCCS--C--C--CCTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC---CTT
T ss_pred ------------EccCCcCC--e--E--ccccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec---CCC
Confidence 33322110 0 1 1566777888888888777763 667778888888888777762 677
Q ss_pred CCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCC-CCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEE
Q psy10289 164 MMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR-ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242 (497)
Q Consensus 164 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L 242 (497)
+++|++|++++|.++.++ ++.+++|++|++++|. +..+ .+..+++|++|++++|.+++++ +..+++|+.|
T Consensus 126 l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L 196 (457)
T 3bz5_A 126 NPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRL 196 (457)
T ss_dssp CTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEE
T ss_pred CCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEECCCCccceec---cccCCCCCEE
Confidence 778888888888777764 5677778888888774 3333 3566777888888888777764 6667778888
Q ss_pred EcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccc
Q psy10289 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLA 322 (497)
Q Consensus 243 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 322 (497)
++++|.++.+ .+..+++|++|++++|++++++ +..+++|+.|++++|.+.+..+ ..+++|+.|++++|.+.
T Consensus 197 ~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~ 267 (457)
T 3bz5_A 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLL 267 (457)
T ss_dssp ECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCS
T ss_pred ECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCC
Confidence 8888877776 2566777888888888877742 6677778888888887777543 33444555444444332
Q ss_pred ccc--------cccccCCCCCCEEECcCCCCCccCcc--------cccccccCCCEEEcCCCcCCCcchhhHhhcCCCCC
Q psy10289 323 KVT--------TTAFTNLTNLIELDISYNKLDRLEVA--------SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLK 386 (497)
Q Consensus 323 ~~~--------~~~~~~~~~L~~L~l~~n~l~~~~~~--------~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~ 386 (497)
.+. .-.+..+++|+.|++++|...+..+. .+..++. |+.|++++|.++. + .+..+++|+
T Consensus 268 ~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~-L~~L~L~~N~l~~--l--~l~~l~~L~ 342 (457)
T 3bz5_A 268 EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK-LVYLYLNNTELTE--L--DVSHNTKLK 342 (457)
T ss_dssp CCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT-CCEEECTTCCCSC--C--CCTTCTTCS
T ss_pred EEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc-CCEEECCCCcccc--c--ccccCCcCc
Confidence 211 01145667777777777753321111 1222222 4444444444442 1 134444444
Q ss_pred EEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcccc-ccCCCcc
Q psy10289 387 ALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG-FDEKSYI 452 (497)
Q Consensus 387 ~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~ 452 (497)
.|++++|+++.+ +.|..|++++|.+.+. ..+..|+.+++++|++++ +|+..+.
T Consensus 343 ~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 343 SLSCVNAHIQDF--------SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEECCSSCCCBC--------TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred EEECCCCCCCCc--------cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 444444444332 2233334444444433 234567888999999985 5665443
No 44
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.2e-30 Score=260.94 Aligned_cols=382 Identities=17% Similarity=0.144 Sum_probs=258.4
Q ss_pred eeeeccccceecCCCCcccccCchhhhhhHHHHHHHHHHHHHH-----HhccccCCCCCCCceeccCCCCcEEEEecCCC
Q psy10289 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLY-----LLHSSASVMCPYMCECALDDRGRYEIVCRRGD 78 (497)
Q Consensus 4 ~~~~~~~L~~Ldls~n~i~~i~~~~f~~l~~L~~l~~~~~~~~-----~~~~~~~~~~p~~~~c~~~~~~~~~~~c~~~~ 78 (497)
+++++++|++||+++|.+....+..|+++.+|+.+....-... ....+.....|.. ......++.....
T Consensus 29 ~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~------~~~L~~L~l~~n~ 102 (454)
T 1jl5_A 29 EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL------PPHLESLVASCNS 102 (454)
T ss_dssp -----CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC------CTTCSEEECCSSC
T ss_pred hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC------cCCCCEEEccCCc
Confidence 4788999999999999999888999999999887653221110 0111112222221 1223355566666
Q ss_pred CCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCc
Q psy10289 79 MANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLD 158 (497)
Q Consensus 79 ~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 158 (497)
+...+ .....++.++++.+... .++. ..++|++|++++|.++.++ .|.++++|++|++++|++++++.
T Consensus 103 l~~lp---~~~~~L~~L~l~~n~l~----~l~~---~~~~L~~L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~ 170 (454)
T 1jl5_A 103 LTELP---ELPQSLKSLLVDNNNLK----ALSD---LPPLLEYLGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD 170 (454)
T ss_dssp CSSCC---CCCTTCCEEECCSSCCS----CCCS---CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC
T ss_pred CCccc---cccCCCcEEECCCCccC----cccC---CCCCCCEEECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC
Confidence 65544 33468999999876321 1111 1269999999999999876 59999999999999999998743
Q ss_pred cccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCcc
Q psy10289 159 YNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE 238 (497)
Q Consensus 159 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~ 238 (497)
..++|++|++++|.++.+|. |+++++|++|++++|+++++.. ..++|++|++++|.+..++. +..+++
T Consensus 171 ----~~~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~n~l~~lp~--~~~l~~ 238 (454)
T 1jl5_A 171 ----LPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPD----LPLSLESIVAGNNILEELPE--LQNLPF 238 (454)
T ss_dssp ----CCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSSCCC--CTTCTT
T ss_pred ----CcccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCC----CcCcccEEECcCCcCCcccc--cCCCCC
Confidence 23589999999999999873 7899999999999999988632 23689999999999998863 889999
Q ss_pred ccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccC
Q psy10289 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318 (497)
Q Consensus 239 L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (497)
|+.|++++|.+++++.. +++|++|++++|.+.+++. ..++|++|++++|.+.++.. ..++|++|++++
T Consensus 239 L~~L~l~~N~l~~l~~~----~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l~~l~~----~~~~L~~L~l~~ 306 (454)
T 1jl5_A 239 LTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIFSGLSE----LPPNLYYLNASS 306 (454)
T ss_dssp CCEEECCSSCCSSCCSC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSEESC----CCTTCCEEECCS
T ss_pred CCEEECCCCcCCccccc----ccccCEEECCCCcccccCc----ccCcCCEEECcCCccCcccC----cCCcCCEEECcC
Confidence 99999999999987642 4799999999999987532 24789999999999887432 136899999999
Q ss_pred CcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcC
Q psy10289 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI 398 (497)
Q Consensus 319 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l 398 (497)
|.+++++. ..++|++|++++|++++++.. ++ +|+.|++++|.++ .++. .+++|+.|++++|+++.+
T Consensus 307 N~l~~i~~----~~~~L~~L~Ls~N~l~~lp~~----~~-~L~~L~L~~N~l~--~lp~---~l~~L~~L~L~~N~l~~l 372 (454)
T 1jl5_A 307 NEIRSLCD----LPPSLEELNVSNNKLIELPAL----PP-RLERLIASFNHLA--EVPE---LPQNLKQLHVEYNPLREF 372 (454)
T ss_dssp SCCSEECC----CCTTCCEEECCSSCCSCCCCC----CT-TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCSSC
T ss_pred CcCCcccC----CcCcCCEEECCCCcccccccc----CC-cCCEEECCCCccc--cccc---hhhhccEEECCCCCCCcC
Confidence 99987643 126999999999999986542 23 4999999999987 4454 478999999999998874
Q ss_pred ---CcccccCC-------------CcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccc
Q psy10289 399 ---PKGLFKMN-------------PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446 (497)
Q Consensus 399 ---~~~~~~~~-------------~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 446 (497)
|.. +..+ ++|+.|++++|++++++. + .++++.|.+.+|.+.+.
T Consensus 373 ~~ip~~-l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~--i--P~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 373 PDIPES-VEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPD--I--PESVEDLRMNSERVVDP 431 (454)
T ss_dssp CCCCTT-CCEEECCC-------------------------------------------------
T ss_pred CCChHH-HHhhhhcccccccccccCcCCEEECCCCcCCcccc--c--hhhHhheeCcCcccCCc
Confidence 433 3444 789999999999998532 2 35688888888877663
No 45
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=257.62 Aligned_cols=262 Identities=25% Similarity=0.394 Sum_probs=211.8
Q ss_pred ccCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCC
Q psy10289 51 SASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130 (497)
Q Consensus 51 ~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 130 (497)
.....||..|.|.... ..+.|...++..+|. .+ .++++.|++++|.++
T Consensus 30 ~~~~~Cp~~C~C~~~~---~~v~c~~~~l~~iP~--~~---------------------------~~~l~~L~L~~n~i~ 77 (440)
T 3zyj_A 30 GSAQTCPSVCSCSNQF---SKVICVRKNLREVPD--GI---------------------------STNTRLLNLHENQIQ 77 (440)
T ss_dssp ---CCCCSSSEECTTS---CEEECCSCCCSSCCS--CC---------------------------CTTCSEEECCSCCCC
T ss_pred cccccCCCCCEeCCCC---CEEEeCCCCcCcCCC--CC---------------------------CCCCcEEEccCCcCC
Confidence 3457899999997432 368898888776652 11 157788899999998
Q ss_pred ccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhc
Q psy10289 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFL 210 (497)
Q Consensus 131 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~ 210 (497)
.+....|.++++|++|++++|+++.+.+.+|.++++|++|++++|.++.+++..|..+++|++|++++|+++.+.+..|.
T Consensus 78 ~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~ 157 (440)
T 3zyj_A 78 IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFN 157 (440)
T ss_dssp EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTT
T ss_pred eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhh
Confidence 88888888899999999999999888888888999999999999999888888888889999999999998888777888
Q ss_pred CCCCCCEEeccC-CCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCce
Q psy10289 211 KLSKLKSLDLSY-NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLET 289 (497)
Q Consensus 211 ~l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 289 (497)
.+++|++|++++ +.+..+++..|.++++|+.|++++|.++.++. +..+++|++|++++|.+.+..+..|.++++|+.
T Consensus 158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC--CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc--cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 889999999988 45677777778888888888888888887753 566788888888888888777778888888888
Q ss_pred eeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCC
Q psy10289 290 LLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346 (497)
Q Consensus 290 L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 346 (497)
|++++|.+.++.+..|..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 888888888777777777888888888888888777777777788888888887654
No 46
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=255.10 Aligned_cols=283 Identities=20% Similarity=0.259 Sum_probs=168.0
Q ss_pred CCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEE
Q psy10289 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVL 194 (497)
Q Consensus 115 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 194 (497)
.|+.....+.+++.++.++...+ ++|++|++++|+++++.+..|.++++|++|++++|.++.+++..|.++++|++|
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCeEeeCCCCCccccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34445556677777776654322 367777777777766666566666667777776666666665556666666666
Q ss_pred eccCCCCCCCChhhhcCCCCCCEEeccCCCCCccCh-hhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCC
Q psy10289 195 SLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP-EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273 (497)
Q Consensus 195 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l 273 (497)
++++|+++.+.+..|.++++|++|++++|.+..++. ..+.++++|+.|++++|. .+
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-----------------------~~ 162 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-----------------------TF 162 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------SC
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-----------------------cc
Confidence 666666666655556666666666666666555544 344444444444444441 24
Q ss_pred CccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccc
Q psy10289 274 KYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353 (497)
Q Consensus 274 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 353 (497)
.+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+..++...+..+++|++|++++|.+++.+...+
T Consensus 163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence 44444455555556666666655555555556666666666666666655555444556667777777776665543332
Q ss_pred cc--cccCCCEEEcCCCcCCCc---chhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccc
Q psy10289 354 DP--IENSLRDLKISGNNIQLS---DVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIH 423 (497)
Q Consensus 354 ~~--~~~~L~~L~ls~n~i~~~---~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~ 423 (497)
.. ....++.++++++.++.. .++..+..+++|+.|++++|+++.+|..+|..+++|+.|++++|++....
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 21 112366777777766522 24455666667777777777777776666666667777777776666543
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.97 E-value=5.3e-30 Score=257.36 Aligned_cols=261 Identities=25% Similarity=0.370 Sum_probs=214.0
Q ss_pred cCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCc
Q psy10289 52 ASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPA 131 (497)
Q Consensus 52 ~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~ 131 (497)
....||..|.|... ...+.|...++..+|. .++ +++++|++++|.++.
T Consensus 42 ~~~~Cp~~C~C~~~---~~~v~c~~~~l~~iP~--~~~---------------------------~~l~~L~L~~n~i~~ 89 (452)
T 3zyi_A 42 GPQNCPSVCSCSNQ---FSKVVCTRRGLSEVPQ--GIP---------------------------SNTRYLNLMENNIQM 89 (452)
T ss_dssp --CCCCTTSEECSS---SCEEECCSSCCSSCCS--CCC---------------------------TTCSEEECCSSCCCE
T ss_pred CcCCCCCCCEECCC---CcEEEECCCCcCccCC--CCC---------------------------CCccEEECcCCcCce
Confidence 45689999999743 2368898887766551 111 478888898888888
Q ss_pred cCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcC
Q psy10289 132 IGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK 211 (497)
Q Consensus 132 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 211 (497)
+.+..|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|..+++|++|++++|+++.+.+..|..
T Consensus 90 ~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 169 (452)
T 3zyi_A 90 IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTT
T ss_pred ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhc
Confidence 88888888999999999999998888888888999999999999988888888888899999999999988887778888
Q ss_pred CCCCCEEeccC-CCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCcee
Q psy10289 212 LSKLKSLDLSY-NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETL 290 (497)
Q Consensus 212 l~~L~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (497)
+++|++|++++ +.+..+++..|.++++|+.|++++|.++.++ .+..+++|++|++++|.+.+..+..|.++++|+.|
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 247 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKL 247 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEE
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEE
Confidence 88999999988 5677777777888888888888888888774 35677888888888888888888888888888888
Q ss_pred eccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCC
Q psy10289 291 LLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346 (497)
Q Consensus 291 ~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 346 (497)
++++|.+.++.+..|..+++|++|++++|+++.+++..+..+++|+.|++++|.+.
T Consensus 248 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 248 WVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 88888888877777888888888888888888887777788888888888888654
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=2.9e-33 Score=282.29 Aligned_cols=355 Identities=17% Similarity=0.169 Sum_probs=270.2
Q ss_pred CCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC----CCCCCCCCCCCEEeccCCcCccCCcccc-CCC
Q psy10289 90 LGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG----FHPFWGVPSLRYLNLTHNNITSLLDYNF-KGM 164 (497)
Q Consensus 90 ~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l 164 (497)
+.++.|+++.+. .........+..+++|++|++++|.++... +..+..+++|++|++++|+++......+ ..+
T Consensus 3 ~~l~~L~Ls~~~--l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEE--LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCC--CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTT
T ss_pred ccceehhhhhcc--cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHH
Confidence 457788887662 122223335788999999999999988543 2346678999999999999876433333 334
Q ss_pred C----CCcEEeccCCCCccC----CcccccCCcCCcEEeccCCCCCCCChhhh-----cCCCCCCEEeccCCCCCccC--
Q psy10289 165 M----NLQELYLDFNKIESI----PSSVFMHLSDLRVLSLAHNRISKLAPRLF-----LKLSKLKSLDLSYNDIVEIN-- 229 (497)
Q Consensus 165 ~----~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~i~~~~-- 229 (497)
+ +|++|++++|.++.. .+..+..+++|++|++++|.++...+..+ ...++|++|++++|.++...
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 160 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH
Confidence 4 799999999998843 24568899999999999999876544333 23568999999999988754
Q ss_pred --hhhhcCCccccEEEcCCCCCcccCccccc-----CCCCccEEEccCCCCCcc----ChhhhcCCccCceeeccCCcCC
Q psy10289 230 --PEIFKDIQELKTFKCRSCGLENINPMMYS-----ILADLIYLDLGYNQLKYL----LADELEDLKKLETLLLDGNHFP 298 (497)
Q Consensus 230 --~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 298 (497)
+..+..+++|+.|++++|.++......+. ..++|++|++++|.+++. .+..+..+++|++|++++|.+.
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 240 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG 240 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence 45566789999999999998764443332 356999999999999864 3566778899999999999887
Q ss_pred CcC-----ccccCCCCCccEEEccCCcccccc----cccccCCCCCCEEECcCCCCCccCccccccc----ccCCCEEEc
Q psy10289 299 VIL-----EKSFSSQFKLQVLCLKRNRLAKVT----TTAFTNLTNLIELDISYNKLDRLEVASFDPI----ENSLRDLKI 365 (497)
Q Consensus 299 ~~~-----~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~----~~~L~~L~l 365 (497)
+.. +..+..+++|++|++++|.++... +..+..+++|++|++++|.+.+.....+... ..+|+.|++
T Consensus 241 ~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 643 333446889999999999988742 3456779999999999999876655444432 124999999
Q ss_pred CCCcCCCcc---hhhHhhcCCCCCEEecCCCcCCcCCccccc-----CCCcCcEEeCcCCCCcc----cchhhhccCCCC
Q psy10289 366 SGNNIQLSD---VKNVLDKLVKLKALSIADMNYTDIPKGLFK-----MNPHLQFLNLSGNNLQD----IHNLLYQSNIKL 433 (497)
Q Consensus 366 s~n~i~~~~---~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~-----~~~~L~~L~Ls~n~l~~----~~~~~~~~~~~L 433 (497)
++|.++... ++..+..+++|+.|++++|.++......+. ..++|+.|++++|++++ ..+..+..+++|
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L 400 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSL 400 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCc
Confidence 999987443 566778889999999999998755332222 26799999999999996 445667789999
Q ss_pred CEEECCCCccccc
Q psy10289 434 THLDLSRNKFKGF 446 (497)
Q Consensus 434 ~~L~l~~n~l~~~ 446 (497)
++|++++|+++..
T Consensus 401 ~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 401 RELDLSNNCLGDA 413 (461)
T ss_dssp CEEECCSSSCCHH
T ss_pred cEEECCCCCCCHH
Confidence 9999999998864
No 49
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=2.1e-30 Score=244.02 Aligned_cols=237 Identities=22% Similarity=0.304 Sum_probs=170.1
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCC
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGF 134 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 134 (497)
.||..|.|.... ...++|...++..+|. .-.+++++|++++|.++.+++
T Consensus 1 ~CP~~C~C~~~~--~~~~~c~~~~l~~ip~-----------------------------~~~~~l~~L~l~~n~i~~~~~ 49 (285)
T 1ozn_A 1 PCPGACVCYNEP--KVTTSCPQQGLQAVPV-----------------------------GIPAASQRIFLHGNRISHVPA 49 (285)
T ss_dssp CCCTTCEEECSS--SCEEECCSSCCSSCCT-----------------------------TCCTTCSEEECTTSCCCEECT
T ss_pred CcCCCceECCCC--CeEEEcCcCCcccCCc-----------------------------CCCCCceEEEeeCCcCCccCH
Confidence 599999997543 2467887777665541 112578888888888888887
Q ss_pred CCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCC-CccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCC
Q psy10289 135 HPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK-IESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLS 213 (497)
Q Consensus 135 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 213 (497)
..|.++++|++|++++|.++++.+.+|.++++|++|++++|. +..+++..|..+++|++|++++|.++.+.+..|..++
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 788888888888888888888877888888888888888886 7777777778888888888888888877777777788
Q ss_pred CCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeecc
Q psy10289 214 KLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293 (497)
Q Consensus 214 ~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 293 (497)
+|++|++++|.+..+++..|..+++|+.|++++|.++.+++..+..+++|++|++++|.+.+..+..+..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 88888888888777777667777777777777777766666556666666666666666665555555555555555555
Q ss_pred CCcCCCcCccccCCCCCccEEEccCCccc
Q psy10289 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLA 322 (497)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 322 (497)
+|.+.+..+..+..+++|++|++++|.+.
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 55555554444555555555555555443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=7.1e-30 Score=243.02 Aligned_cols=257 Identities=23% Similarity=0.344 Sum_probs=178.1
Q ss_pred CCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCC
Q psy10289 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFH 135 (497)
Q Consensus 56 ~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 135 (497)
||..|.|... .+.|...++..+|. .+ .+++++|++++|.++.++..
T Consensus 1 CP~~C~C~~~-----~l~c~~~~l~~ip~---------------------------~~--~~~l~~L~L~~n~l~~i~~~ 46 (306)
T 2z66_A 1 CPSRCSCSGT-----EIRCNSKGLTSVPT---------------------------GI--PSSATRLELESNKLQSLPHG 46 (306)
T ss_dssp CCTTCEEETT-----EEECCSSCCSSCCS---------------------------CC--CTTCCEEECCSSCCCCCCTT
T ss_pred CcCCCeeCCC-----EEEcCCCCcccCCC---------------------------CC--CCCCCEEECCCCccCccCHh
Confidence 8999999743 68888777665541 01 15788999999999988888
Q ss_pred CCCCCCCCCEEeccCCcCccCC--ccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCCh-hhhcCC
Q psy10289 136 PFWGVPSLRYLNLTHNNITSLL--DYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP-RLFLKL 212 (497)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l 212 (497)
.|.++++|++|++++|+++.+. +..+.++++|++|++++|.+..++.. |..+++|++|++++|+++.+.+ ..+..+
T Consensus 47 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 125 (306)
T 2z66_A 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSL 125 (306)
T ss_dssp TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESSTTTTTTTTC
T ss_pred HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh-cCCCCCCCEEECCCCcccccccchhhhhc
Confidence 8889999999999999887553 45566788899999988888887765 6778888888888888877654 467777
Q ss_pred CCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcc-cCcccccCCCCccEEEccCCCCCccChhhhcCCccCceee
Q psy10289 213 SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLEN-INPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291 (497)
Q Consensus 213 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 291 (497)
++|++|++++|.+....+..+.++++|+.|++++|.+.. ..+.. +..+++|++|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------~~~l~~L~~L~ 181 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------------------------FTELRNLTFLD 181 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC------------------------CTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH------------------------HhhCcCCCEEE
Confidence 778888887777776666666666666666666665554 23333 44444555555
Q ss_pred ccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCC
Q psy10289 292 LDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371 (497)
Q Consensus 292 l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~ 371 (497)
+++|.+.+..+..+..+++|++|++++|.++++++..+..+++|++|++++|++.+..+..+..++.+|+.|++++|+++
T Consensus 182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 55555554444455555566666666666665555556666677777777777666666666666534777777777765
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.4e-32 Score=274.49 Aligned_cols=335 Identities=22% Similarity=0.220 Sum_probs=252.1
Q ss_pred CccccCCCCCcEEEccCCCCCccCCCCC-CCCC----CCCEEeccCCcCccC----CccccCCCCCCcEEeccCCCCccC
Q psy10289 110 GPIFQQFQHLEELHITNSFIPAIGFHPF-WGVP----SLRYLNLTHNNITSL----LDYNFKGMMNLQELYLDFNKIESI 180 (497)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~l~----~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~ 180 (497)
+..+..+++|++|++++|.+++.+...+ ..++ +|++|++++|+++.. .+..+..+++|++|++++|.+...
T Consensus 49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 128 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA 128 (461)
T ss_dssp HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence 4567888999999999999877544333 2344 799999999999853 367788999999999999998743
Q ss_pred Cc-----ccccCCcCCcEEeccCCCCCCCC----hhhhcCCCCCCEEeccCCCCCccChhhhc-----CCccccEEEcCC
Q psy10289 181 PS-----SVFMHLSDLRVLSLAHNRISKLA----PRLFLKLSKLKSLDLSYNDIVEINPEIFK-----DIQELKTFKCRS 246 (497)
Q Consensus 181 ~~-----~~~~~l~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~i~~~~~~~~~-----~~~~L~~L~l~~ 246 (497)
.. ..+...++|++|++++|+++... +..+..+++|++|++++|.+.+.....+. ..++|+.|++++
T Consensus 129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 22 22334568999999999998754 45567789999999999998765444443 366999999999
Q ss_pred CCCcccC----cccccCCCCccEEEccCCCCCccC-----hhhhcCCccCceeeccCCcCCCc----CccccCCCCCccE
Q psy10289 247 CGLENIN----PMMYSILADLIYLDLGYNQLKYLL-----ADELEDLKKLETLLLDGNHFPVI----LEKSFSSQFKLQV 313 (497)
Q Consensus 247 ~~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~~~L~~ 313 (497)
|.++... +..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. .+..+..+++|++
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 288 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCE
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcce
Confidence 9998642 445667899999999999887543 22334689999999999998875 3445666899999
Q ss_pred EEccCCcccccccccc-----cCCCCCCEEECcCCCCCccCcc----cccccccCCCEEEcCCCcCCCcchh---hHhhc
Q psy10289 314 LCLKRNRLAKVTTTAF-----TNLTNLIELDISYNKLDRLEVA----SFDPIENSLRDLKISGNNIQLSDVK---NVLDK 381 (497)
Q Consensus 314 L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~----~~~~~~~~L~~L~ls~n~i~~~~~~---~~~~~ 381 (497)
|++++|.+.......+ ...++|++|++++|.++..... .+..++. |+.|++++|.++..... ..+..
T Consensus 289 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF-LLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS-CCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred EECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC-ccEEEccCCccccccHHHHHHHHcC
Confidence 9999999875443322 2347999999999999876433 3334455 99999999998743322 22222
Q ss_pred -CCCCCEEecCCCcCC-----cCCcccccCCCcCcEEeCcCCCCcccchhhhc-----cCCCCCEEECCCCccccc
Q psy10289 382 -LVKLKALSIADMNYT-----DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQ-----SNIKLTHLDLSRNKFKGF 446 (497)
Q Consensus 382 -~~~L~~L~l~~n~i~-----~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-----~~~~L~~L~l~~n~l~~~ 446 (497)
.++|+.|++++|.++ .++.. +..+++|++|++++|++++.....+. ....|+.|++.++.+...
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~-l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~ 442 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAAT-LLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHH-HHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHH
T ss_pred CCCceEEEECCCCCCChhhHHHHHHH-HHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHH
Confidence 679999999999998 45554 46689999999999999886544333 234799999988876653
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=246.08 Aligned_cols=255 Identities=22% Similarity=0.302 Sum_probs=219.2
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
++|++|++++|.++.++...|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|.++++|++|++
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 47899999999999998888999999999999999999988888999999999999999999999888899999999999
Q ss_pred cCCCCCCCCh-hhhcCCCCCCEEeccCC-CCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC
Q psy10289 197 AHNRISKLAP-RLFLKLSKLKSLDLSYN-DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274 (497)
Q Consensus 197 ~~n~i~~~~~-~~~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (497)
++|+++.+.. ..|..+++|++|++++| .+..+++..|.++++|+.|++++|.++.+.+..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 9999998865 57888999999999998 588888888999999999999999999988888999999999999999998
Q ss_pred ccChhhhcCCccCceeeccCCcCCCcCccccC---CCCCccEEEccCCccccc----ccccccCCCCCCEEECcCCCCCc
Q psy10289 275 YLLADELEDLKKLETLLLDGNHFPVILEKSFS---SQFKLQVLCLKRNRLAKV----TTTAFTNLTNLIELDISYNKLDR 347 (497)
Q Consensus 275 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~L~~L~l~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~ 347 (497)
......+..+++|+.|++++|.+.+..+..+. ....++.++++++.+.+. .+..+..+++|++|++++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 76666667789999999999998876544332 356788888888877642 23457889999999999999998
Q ss_pred cCcccccccccCCCEEEcCCCcCCC
Q psy10289 348 LEVASFDPIENSLRDLKISGNNIQL 372 (497)
Q Consensus 348 ~~~~~~~~~~~~L~~L~ls~n~i~~ 372 (497)
++...+..++. |+.|++++|++..
T Consensus 292 i~~~~~~~l~~-L~~L~L~~N~~~~ 315 (353)
T 2z80_A 292 VPDGIFDRLTS-LQKIWLHTNPWDC 315 (353)
T ss_dssp CCTTTTTTCTT-CCEEECCSSCBCC
T ss_pred cCHHHHhcCCC-CCEEEeeCCCccC
Confidence 88777777876 9999999998873
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.9e-29 Score=240.06 Aligned_cols=261 Identities=25% Similarity=0.359 Sum_probs=181.0
Q ss_pred CCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCC--hhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEE
Q psy10289 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA--PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFK 243 (497)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~ 243 (497)
+|++|++++|.++.+++.+|.++++|++|++++|.++... +..+..+++|++|++++|.+..++. .+.++++|+.|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEE-EEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChh-hcCCCCCCCEEE
Confidence 4444444444444444444445555555555555544321 2334445556666666655555433 255566666666
Q ss_pred cCCCCCcccCc-ccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCC-cCccccCCCCCccEEEccCCcc
Q psy10289 244 CRSCGLENINP-MMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV-ILEKSFSSQFKLQVLCLKRNRL 321 (497)
Q Consensus 244 l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~l~~n~l 321 (497)
+++|.++.+++ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66666665554 456667788888888888877777778888899999999988876 5677889999999999999999
Q ss_pred cccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcC-CCCCEEecCCCcCCcCCc
Q psy10289 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKL-VKLKALSIADMNYTDIPK 400 (497)
Q Consensus 322 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~-~~L~~L~l~~n~i~~l~~ 400 (497)
+++.+..+..+++|++|++++|++++++...+..++. |+.|++++|.++. ..+..+..+ ++|+.|++++|.++.-..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~-~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-LQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT-CCEEECTTSCCCB-CSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc-CCEeECCCCCCcc-cCHHHHHhhhccCCEEEccCCCeecccC
Confidence 9998888999999999999999999998888888877 9999999999873 345566777 499999999998864322
Q ss_pred --ccccCCCcCcEEeCcCCCCcccchhhhcc
Q psy10289 401 --GLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429 (497)
Q Consensus 401 --~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 429 (497)
.+...+...+.+.+..+.+.-..|..+.+
T Consensus 266 ~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 266 HQSFLQWIKDQRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp GHHHHHHHHHTGGGBSCGGGCBEEESGGGTT
T ss_pred hHHHHHHHHhhhhhhccccccccCCchhhCC
Confidence 11122334445555566666555555544
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.6e-28 Score=245.77 Aligned_cols=249 Identities=29% Similarity=0.392 Sum_probs=230.3
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
..+.++.++..++.++.... ++++.|++++|+++.+.+..|.++++|++|++++|.++.+++..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 45688999999999875432 589999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCC-CCCcccCcccccCCCCccEEEccCCCCCcc
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS-CGLENINPMMYSILADLIYLDLGYNQLKYL 276 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (497)
+|+++.+.+..|..+++|++|++++|.+..+++..|.++++|+.|++++ +.+..+++..|.++++|++|++++|.++.+
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9999999888899999999999999999999999999999999999998 567778888899999999999999999976
Q ss_pred ChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccccc
Q psy10289 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI 356 (497)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 356 (497)
+ .+..+++|++|++++|.+.++.+..|..+++|++|++++|.++.+.+..|..+++|++|++++|+++.++...+..+
T Consensus 201 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 201 P--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp C--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred c--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 4 48899999999999999999989999999999999999999999999999999999999999999999999888888
Q ss_pred ccCCCEEEcCCCcCCC
Q psy10289 357 ENSLRDLKISGNNIQL 372 (497)
Q Consensus 357 ~~~L~~L~ls~n~i~~ 372 (497)
+. |+.|++++|++..
T Consensus 279 ~~-L~~L~L~~Np~~C 293 (440)
T 3zyj_A 279 HH-LERIHLHHNPWNC 293 (440)
T ss_dssp TT-CCEEECCSSCEEC
T ss_pred cC-CCEEEcCCCCccC
Confidence 87 9999999999763
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=2.1e-28 Score=245.75 Aligned_cols=249 Identities=29% Similarity=0.400 Sum_probs=230.0
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
....++.++..++.++.. + .+++++|++++|+++.+.+..|.++++|++|++++|.++.+++..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-I--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCC-C--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456788888899988753 2 2589999999999999999999999999999999999999998899999999999999
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCC-CCCcccCcccccCCCCccEEEccCCCCCcc
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS-CGLENINPMMYSILADLIYLDLGYNQLKYL 276 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (497)
+|+++.+.+..|..+++|++|++++|.+..+++..|.++++|+.|++++ +.+..+++..|..+++|++|++++|.+.+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9999999888899999999999999999999999999999999999998 577788888899999999999999999976
Q ss_pred ChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccccc
Q psy10289 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI 356 (497)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 356 (497)
. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+..+.+..|..+++|++|++++|+++.++...+..+
T Consensus 212 ~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 P--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp C--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred c--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 58899999999999999999999999999999999999999999999899999999999999999999999888888
Q ss_pred ccCCCEEEcCCCcCCC
Q psy10289 357 ENSLRDLKISGNNIQL 372 (497)
Q Consensus 357 ~~~L~~L~ls~n~i~~ 372 (497)
+. |+.|++++|++..
T Consensus 290 ~~-L~~L~L~~Np~~C 304 (452)
T 3zyi_A 290 RY-LVELHLHHNPWNC 304 (452)
T ss_dssp TT-CCEEECCSSCEEC
T ss_pred cC-CCEEEccCCCcCC
Confidence 87 9999999999763
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=9.4e-30 Score=242.55 Aligned_cols=249 Identities=18% Similarity=0.236 Sum_probs=154.8
Q ss_pred CCCcEEEccCCCCCc--cCCCCCCCCCCCCEEeccC-CcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcE
Q psy10289 117 QHLEELHITNSFIPA--IGFHPFWGVPSLRYLNLTH-NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 193 (497)
.++++|+++++.++. .-+..|.++++|++|++++ |.+.+..+..|.++++|++|++++|.++...+..|.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 366777777777765 3445677777777777774 7777666667777777777777777777444445667777777
Q ss_pred EeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCc-cccEEEcCCCCCcccCcccccCCCCccEEEccCCC
Q psy10289 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQ-ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272 (497)
Q Consensus 194 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 272 (497)
|++++|.+++..|..+..+++|++|++++|.+++..+..+..++ .|+.|++++|.+++..+..+..++ |++|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 77777777765566677777777777777777654455566665 666666666666655555555554 6666666666
Q ss_pred CCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccc
Q psy10289 273 LKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352 (497)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 352 (497)
+.+..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 6655555566666666666666655544433 445555666666666555444445555555555555555555333322
Q ss_pred ccccccCCCEEEcCCCc
Q psy10289 353 FDPIENSLRDLKISGNN 369 (497)
Q Consensus 353 ~~~~~~~L~~L~ls~n~ 369 (497)
..++. |+.+++++|+
T Consensus 288 -~~l~~-L~~l~l~~N~ 302 (313)
T 1ogq_A 288 -GNLQR-FDVSAYANNK 302 (313)
T ss_dssp -TTGGG-SCGGGTCSSS
T ss_pred -ccccc-cChHHhcCCC
Confidence 33333 5555555554
No 57
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=9.1e-30 Score=242.63 Aligned_cols=248 Identities=20% Similarity=0.231 Sum_probs=137.2
Q ss_pred CCCcEEeccCCCCcc---CCcccccCCcCCcEEeccC-CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCcccc
Q psy10289 165 MNLQELYLDFNKIES---IPSSVFMHLSDLRVLSLAH-NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELK 240 (497)
Q Consensus 165 ~~L~~L~L~~n~~~~---~~~~~~~~l~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~ 240 (497)
.+++.|++++|.+.. +| ..|.++++|++|++++ |.+.+..|..|..+++|++|++++|.+.+..+..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~-~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccC-hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 356777777776664 33 3456667777777764 666655566666666666666666666655555566666666
Q ss_pred EEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCc-cCceeeccCCcCCCcCccccCCCCCccEEEccCC
Q psy10289 241 TFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK-KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319 (497)
Q Consensus 241 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 319 (497)
+|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-------------- 194 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-------------- 194 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGG--------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHH--------------
Confidence 666666655544444455555555555555555544444444444 44555554444444444444
Q ss_pred cccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCC
Q psy10289 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIP 399 (497)
Q Consensus 320 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~ 399 (497)
..++ |++|++++|.+.+..+..+..++. |+.|++++|.++. . ...+..+++|++|++++|+++...
T Consensus 195 ----------~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~N~l~~-~-~~~~~~l~~L~~L~Ls~N~l~~~~ 260 (313)
T 1ogq_A 195 ----------ANLN-LAFVDLSRNMLEGDASVLFGSDKN-TQKIHLAKNSLAF-D-LGKVGLSKNLNGLDLRNNRIYGTL 260 (313)
T ss_dssp ----------GGCC-CSEEECCSSEEEECCGGGCCTTSC-CSEEECCSSEECC-B-GGGCCCCTTCCEEECCSSCCEECC
T ss_pred ----------hCCc-ccEEECcCCcccCcCCHHHhcCCC-CCEEECCCCceee-e-cCcccccCCCCEEECcCCcccCcC
Confidence 4443 444444444444444444444443 5555555554431 1 112444556666666666665222
Q ss_pred cccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCc
Q psy10289 400 KGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442 (497)
Q Consensus 400 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~ 442 (497)
+..|..+++|+.|++++|++++..+.. ..+++|+.+++++|+
T Consensus 261 p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 261 PQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 233456666777777777666554443 556666677777665
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.5e-28 Score=231.33 Aligned_cols=224 Identities=23% Similarity=0.297 Sum_probs=175.0
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
++++.+++.++.++.. -.++|++|++++|+++.+.+..|..+++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 6788888888887643 2358899999999998888788888889999999988888887777888888888998888
Q ss_pred C-CCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccCh
Q psy10289 200 R-ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA 278 (497)
Q Consensus 200 ~-i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 278 (497)
. ++.+.+..|..+++|++|++++|.+.++++..+.++++|+.|++++|.++.+++..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 777777778888888888888888888877778888888888888888887777777777777777777777777666
Q ss_pred hhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCC
Q psy10289 279 DELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346 (497)
Q Consensus 279 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 346 (497)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++++++..+..+++|++|++++|.+.
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 66777777777777777777766666667777777777777777666666666677777777776654
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.4e-26 Score=238.55 Aligned_cols=266 Identities=23% Similarity=0.183 Sum_probs=201.8
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
++++|+++++.++.++...+ ++|++|++++|.++.++. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~---~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC---TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCccChhhC---CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECc
Confidence 57888888888888765332 688888888888887754 56788888888888888876 56888888888
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccC
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL 277 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 277 (497)
+|.++.+.. .+++|++|++++|.++.++.. +++|+.|++++|.++.++. .+.+|+.|++++|.+++++
T Consensus 110 ~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~ 177 (622)
T 3g06_A 110 SNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP 177 (622)
T ss_dssp SCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC
T ss_pred CCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc
Confidence 888887743 467888888888888887652 4788888888888887654 2467888888888888754
Q ss_pred hhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccc
Q psy10289 278 ADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357 (497)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~ 357 (497)
..+++|+.|++++|.+.++.. .+++|+.|++++|.++.++. .+++|+.|++++|.++.++ ..++
T Consensus 178 ----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~ 241 (622)
T 3g06_A 178 ----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPS 241 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCT
T ss_pred ----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCC
Confidence 456788888888888876432 24678888888888877654 2478888888888888765 2223
Q ss_pred cCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhcc
Q psy10289 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429 (497)
Q Consensus 358 ~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 429 (497)
+|+.|++++|.++ .++. .+++|+.|++++|+++.+|.. +..+++|+.|+|++|++++..+..+..
T Consensus 242 -~L~~L~Ls~N~L~--~lp~---~~~~L~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 242 -ELKELMVSGNRLT--SLPM---LPSGLLSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp -TCCEEECCSSCCS--CCCC---CCTTCCEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred -cCcEEECCCCCCC--cCCc---ccccCcEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCCcCHHHHHh
Confidence 4888888888876 3443 567888888888888888765 567788888888888888877665543
No 60
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.2e-26 Score=237.07 Aligned_cols=262 Identities=22% Similarity=0.225 Sum_probs=224.1
Q ss_pred CCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEec
Q psy10289 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDL 220 (497)
Q Consensus 141 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 220 (497)
.+++.|++++|.++.++.. +. ++|++|++++|.++.+|. .+++|++|++++|+++.+.. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~-l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDC-LP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV----LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCSCCCSC-CC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC----CCTTCCEEEE
T ss_pred CCCcEEEecCCCcCccChh-hC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC----CCCCCCEEEC
Confidence 3699999999999988553 33 799999999999999987 46899999999999998744 6799999999
Q ss_pred cCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCc
Q psy10289 221 SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVI 300 (497)
Q Consensus 221 ~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 300 (497)
++|.++.++. .+++|+.|++++|.++.++.. +++|++|++++|.+++++. ..++|+.|++++|.++++
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~~----l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCCC----CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC
Confidence 9999999866 578899999999999988763 5899999999999987542 457899999999999885
Q ss_pred CccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhh
Q psy10289 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380 (497)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 380 (497)
. ..+++|+.|++++|.+++++.. +++|+.|++++|.++.++.. ..+|+.|++++|.++. ++ .
T Consensus 177 ~----~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~N~l~~l~~~-----~~~L~~L~Ls~N~L~~--lp---~ 238 (622)
T 3g06_A 177 P----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTS--LP---V 238 (622)
T ss_dssp C----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSC--CC---C
T ss_pred c----ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcCCcccccCCC-----CCCCCEEEccCCccCc--CC---C
Confidence 4 4568999999999999987652 48999999999999987632 2349999999999873 44 5
Q ss_pred cCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccC
Q psy10289 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448 (497)
Q Consensus 381 ~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 448 (497)
.+++|+.|++++|+++.+|. .+++|+.|++++|+++.+++ .+..+++|+.|++++|++++.++
T Consensus 239 ~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~-~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 239 LPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPE-SLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCG-GGGGSCTTCEEECCSCCCCHHHH
T ss_pred CCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCH-HHhhccccCEEEecCCCCCCcCH
Confidence 66899999999999999987 45899999999999998864 58899999999999999987543
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=7.1e-29 Score=237.09 Aligned_cols=261 Identities=16% Similarity=0.227 Sum_probs=152.0
Q ss_pred EeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCC
Q psy10289 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGL 249 (497)
Q Consensus 170 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l 249 (497)
.+++.+.+...+...+..+++|++|++++|+++.+.+..|..+++|++|++++|.+.++.+ +..+++|+.|++++|.+
T Consensus 15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence 3444444444444444445555555555555555555555555555555555555554433 55555555555555555
Q ss_pred cccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccc
Q psy10289 250 ENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAF 329 (497)
Q Consensus 250 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 329 (497)
+++++ .++|++|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+..+.+..+
T Consensus 93 ~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 164 (317)
T 3o53_A 93 QELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164 (317)
T ss_dssp EEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGG
T ss_pred ccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHH
Confidence 54432 25666666666666554332 24556666666666666655566666667777777776666555444
Q ss_pred -cCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCc
Q psy10289 330 -TNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408 (497)
Q Consensus 330 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~ 408 (497)
..+++|++|++++|.++.++... .++. |+.|++++|.++ .++..+..+++|+.|++++|+++.+|.. +..+++
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~~~~~--~l~~-L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~ 238 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDVKGQV--VFAK-LKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQN 238 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEEECCC--CCTT-CCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTT
T ss_pred hhccCcCCEEECCCCcCccccccc--cccc-CCEEECCCCcCC--cchhhhcccCcccEEECcCCcccchhhH-hhcCCC
Confidence 35677777777777766653322 2333 677777777665 3344466666777777777777666654 456677
Q ss_pred CcEEeCcCCCCc-ccchhhhccCCCCCEEECCCC-ccccc
Q psy10289 409 LQFLNLSGNNLQ-DIHNLLYQSNIKLTHLDLSRN-KFKGF 446 (497)
Q Consensus 409 L~~L~Ls~n~l~-~~~~~~~~~~~~L~~L~l~~n-~l~~~ 446 (497)
|+.|++++|+++ +..+..+..+++|+.++++++ .+++.
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 777777777776 445555666666666666633 34443
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=235.61 Aligned_cols=261 Identities=20% Similarity=0.211 Sum_probs=184.2
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
+++..+++.+.+.......+..+++|++|++++|+++++.+..|..+++|++|++++|.++.+++ |..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34555666666655544455566677777777777777776777777777777777777776654 6777777777777
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccC
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL 277 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 277 (497)
+|.++++. ..++|++|++++|.+.++++.. +++|+.|++++|.++.+++..+..+++|++|++++|.+.+..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 77776552 2367777888777777765433 456777777777777777767777778888888888777766
Q ss_pred hhhh-cCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccccc
Q psy10289 278 ADEL-EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI 356 (497)
Q Consensus 278 ~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 356 (497)
+..+ ..+++|++|++++|.+++... ...+++|++|++++|.++++++. +..+++|++|++++|+++.++. .+..+
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~-~~~~l 236 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFS 236 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCC
T ss_pred HHHHhhccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhh-HhhcC
Confidence 5555 367778888888887776532 23467788888888888777665 7777888888888888877643 35555
Q ss_pred ccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCC
Q psy10289 357 ENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADM 393 (497)
Q Consensus 357 ~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n 393 (497)
+. |+.|++++|.+.....+..+..+++|+.+++.++
T Consensus 237 ~~-L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 237 QN-LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TT-CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CC-CCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 55 8888888887775566667777777777776644
No 63
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.94 E-value=8.9e-26 Score=206.55 Aligned_cols=226 Identities=14% Similarity=0.245 Sum_probs=170.2
Q ss_pred CCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC
Q psy10289 54 VMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG 133 (497)
Q Consensus 54 ~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 133 (497)
+.||..|.|... ....+.|.. +..+|. + .+++++|++++|.++.++
T Consensus 2 ~~cp~~C~C~~~--~~~~v~c~~--l~~ip~---~---------------------------~~~l~~L~l~~n~l~~i~ 47 (239)
T 2xwt_C 2 GCSSPPCECHQE--EDFRVTCKD--IQRIPS---L---------------------------PPSTQTLKLIETHLRTIP 47 (239)
T ss_dssp -CCSSSCSEEEC--STTEEEECS--CSSCCC---C---------------------------CTTCCEEEEESCCCSEEC
T ss_pred CCCCCCCeeCCC--CcceeEccC--ccccCC---C---------------------------CCcccEEEEeCCcceEEC
Confidence 469999999751 233677865 333331 1 137888999999999988
Q ss_pred CCCCCCCCCCCEEeccCCc-CccCCccccCCCCCCcEEeccC-CCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcC
Q psy10289 134 FHPFWGVPSLRYLNLTHNN-ITSLLDYNFKGMMNLQELYLDF-NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK 211 (497)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 211 (497)
+.+|.++++|++|++++|+ ++.+.+.+|.++++|++|++++ |.++.+++..|.++++|++|++++|+++.+. . |..
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~-~~~ 125 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-D-LTK 125 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-C-CTT
T ss_pred HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-c-ccc
Confidence 8888899999999999996 8888888888899999999998 8898888888888899999999999888863 3 777
Q ss_pred CCCCC---EEeccCC-CCCccChhhhcCCcccc-EEEcCCCCCcccCcccccCCCCccEEEccCCC-CCccChhhhcCC-
Q psy10289 212 LSKLK---SLDLSYN-DIVEINPEIFKDIQELK-TFKCRSCGLENINPMMYSILADLIYLDLGYNQ-LKYLLADELEDL- 284 (497)
Q Consensus 212 l~~L~---~L~l~~n-~i~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l- 284 (497)
+++|+ +|++++| .++.+++..|.++++|+ .|++++|.++.+++..+.. ++|++|++++|. ++++.+..|.++
T Consensus 126 l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~ 204 (239)
T 2xwt_C 126 VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVY 204 (239)
T ss_dssp CCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCS
T ss_pred ccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccc
Confidence 78887 8888888 88888877788888888 8888888887777666665 677777777774 766666666666
Q ss_pred ccCceeeccCCcCCCcCccccCCCCCccEEEccCC
Q psy10289 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319 (497)
Q Consensus 285 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n 319 (497)
++|+.|++++|.++++.+. .+++|+.|+++++
T Consensus 205 ~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 205 SGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp BCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred cCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6677777776666654433 3445666666543
No 64
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=6.1e-26 Score=217.48 Aligned_cols=225 Identities=19% Similarity=0.188 Sum_probs=151.8
Q ss_pred CCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEe
Q psy10289 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 195 (497)
.+++++|++++|.++.++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+|.. |.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCCCCC-CSCGGGGTTCSEEEEESCCCCCCCGG-GGGCTTCCEEE
T ss_pred ccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCccch-hHHHhccCCCCEEECCCCccccCcHH-HhcCcCCCEEE
Confidence 4688888998888888764 456688899999998888855 56778888899999988888888754 67888888888
Q ss_pred ccCCCCCCCChhhhc---------CCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEE
Q psy10289 196 LAHNRISKLAPRLFL---------KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266 (497)
Q Consensus 196 l~~n~i~~~~~~~~~---------~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L 266 (497)
+++|.+.+..|..+. ++++|++|++++|.++.++ ..+..+++|+.|++++|.++++++ .+..+++|++|
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L 234 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEEL 234 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEE
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEE
Confidence 888776655455443 3666777777777666553 336666666666666666665544 35556666666
Q ss_pred EccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCC
Q psy10289 267 DLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345 (497)
Q Consensus 267 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 345 (497)
++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.+++..+.+
T Consensus 235 ~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 235 DLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp ECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred ECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 6666666555555566666666666666655555555555566666666666555555555556666666666555443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.2e-27 Score=227.96 Aligned_cols=253 Identities=20% Similarity=0.161 Sum_probs=152.3
Q ss_pred cCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCC-Chhhhc-------CCCCCCEEeccCCCCCccChhh
Q psy10289 161 FKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFL-------KLSKLKSLDLSYNDIVEINPEI 232 (497)
Q Consensus 161 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~-------~l~~L~~L~l~~n~i~~~~~~~ 232 (497)
+++.++|+++++++|.+ .+|..... .|+.|++++|.+... .+..+. ++++|++|++++|.+++..+..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34455666666666666 55544322 266666666655321 122221 3445555555555444322222
Q ss_pred hcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCC-----ccCceeeccCCcCCCcCccccCC
Q psy10289 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL-----KKLETLLLDGNHFPVILEKSFSS 307 (497)
Q Consensus 233 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~l~~n~~~~~~~~~~~~ 307 (497)
+ .+..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..
T Consensus 115 ~----------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 115 L----------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp S----------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred H----------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 2 014455555555555555554 3444444 56666666666666666566666
Q ss_pred CCCccEEEccCCccccc---cc-ccccCCCCCCEEECcCCCCCccC---cccccccccCCCEEEcCCCcCCCcchhhHhh
Q psy10289 308 QFKLQVLCLKRNRLAKV---TT-TAFTNLTNLIELDISYNKLDRLE---VASFDPIENSLRDLKISGNNIQLSDVKNVLD 380 (497)
Q Consensus 308 ~~~L~~L~l~~n~l~~~---~~-~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 380 (497)
+++|++|++++|++.+. ++ ..+..+++|++|++++|+++.++ ...+..++. |+.|++++|.++.......+.
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ-LQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCC-CSEEECTTSCCCSSCCCSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCC-CCEEECCCCcCCcccchhhhh
Confidence 66677777776665432 11 11256677777777777766332 222233344 777777777766322113345
Q ss_pred cCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccc
Q psy10289 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446 (497)
Q Consensus 381 ~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 446 (497)
.+++|+.|++++|+++.+|..++ ++|+.|++++|++++++. +..+++|++|++++|++++.
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred hcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 56788888888888888888764 789999999999998843 78889999999999988764
No 66
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.94 E-value=2.7e-25 Score=208.07 Aligned_cols=204 Identities=27% Similarity=0.366 Sum_probs=104.2
Q ss_pred CCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEecc
Q psy10289 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221 (497)
Q Consensus 142 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 221 (497)
+|++|++++|+++++.+..|.++++|++|++++|.+..+++..|.++++|++|++++|.++.+.+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444444455555555555555554444444455555555555555554444444555555555555
Q ss_pred CCCCCccChhhhcCCccccEEEcCCCCCcccC-cccccCCCCccEEEccCCCCCccChhhhcCCccCc----eeeccCCc
Q psy10289 222 YNDIVEINPEIFKDIQELKTFKCRSCGLENIN-PMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE----TLLLDGNH 296 (497)
Q Consensus 222 ~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~~n~ 296 (497)
+|.+..+++..+..+++|+.|++++|.++.+. +..+..+++|++|++++|.+++..+..+..+++|+ .+++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 55554444444444555555555555554432 34445555566666666655555555555544444 45555555
Q ss_pred CCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCC
Q psy10289 297 FPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346 (497)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 346 (497)
+.++.+..+.. .+|++|++++|.++.+++..+..+++|++|++++|.+.
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 55544433332 24555555555555555544555555555555555544
No 67
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=9.5e-25 Score=203.50 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=120.0
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
..+.++++++.++.++.. +. +++++|++++|+++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~-~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSN-IP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSC-CC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCC-CC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 456677777777766532 21 467777777777777766667777777777777777777766666666777777777
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccC
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL 277 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 277 (497)
+|+++.+.+..|..+++|++|++++|.++.+++..|..+++|+.|++++|.++.+++..+..+++|++|++++|.+.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~- 172 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV- 172 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe-
Confidence 7766666555566666666666666666666555555555555555555555555444444444444444444444444
Q ss_pred hhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCC
Q psy10289 278 ADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346 (497)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 346 (497)
.+..|..+++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 173 -----------------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 173 -----------------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -----------------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred -----------------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 3334444445555555555555544444555555555555555443
No 68
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=9.1e-25 Score=204.45 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=128.8
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
++++|++++|.++.+++..|.++++|++|++++|+++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666666665566666666666666666666655566666666666666666666665556666666666666
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccC-hhhhcCCccccEEEcCCCCCcccCcccccCCCCcc----EEEccCCC
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFKDIQELKTFKCRSCGLENINPMMYSILADLI----YLDLGYNQ 272 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~----~L~l~~n~ 272 (497)
+|.+..+.+..+..+++|++|++++|.+.++. +..+.++++|+.|++++|.++.+++..+..+.+|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 66666655545666666666666666666543 45566666666666666666666555554444444 66677776
Q ss_pred CCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccc
Q psy10289 273 LKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLA 322 (497)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 322 (497)
+.++.+..+.. .+|++|++++|.++++.+..+..+++|++|++++|.+.
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66655544433 36777777777776666656666777777777777664
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.5e-27 Score=227.32 Aligned_cols=252 Identities=23% Similarity=0.234 Sum_probs=169.0
Q ss_pred CCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCcc--CCcccc------cCCcCCcEEeccCCCCCCCChhh
Q psy10289 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES--IPSSVF------MHLSDLRVLSLAHNRISKLAPRL 208 (497)
Q Consensus 137 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~--~~~~~~------~~l~~L~~L~l~~n~i~~~~~~~ 208 (497)
+.+.++|+.|++++|.+ .++ ..+... |+.|++++|.+.. ++...+ .++++|++|++++|++++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p-~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADL-GQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCC-HHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc-ccH-HHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 45667899999999999 554 333332 9999999998864 443321 16899999999999999766765
Q ss_pred h--cCCCCCCEEeccCCCCCccChhhhcCC-----ccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccC--hh
Q psy10289 209 F--LKLSKLKSLDLSYNDIVEINPEIFKDI-----QELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL--AD 279 (497)
Q Consensus 209 ~--~~l~~L~~L~l~~n~i~~~~~~~~~~~-----~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~ 279 (497)
+ ..+++|++|++++|.++++ +..+..+ ++|+.|++++|.++.+++..+..+++|++|++++|.+.+.. +.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8899999999999999988 5656655 56666666666666666555555666666666666544321 11
Q ss_pred hhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccc---cccccccCCCCCCEEECcCCCCCccCc-ccccc
Q psy10289 280 ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAK---VTTTAFTNLTNLIELDISYNKLDRLEV-ASFDP 355 (497)
Q Consensus 280 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~ 355 (497)
.+ .+..+++|++|++++|.++. +....+..+++|++|++++|++.+..+ ..+..
T Consensus 194 ~~----------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 194 AL----------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp HS----------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred HH----------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 11 12445556666666665552 222334456677777777776666442 33333
Q ss_pred cccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCccc
Q psy10289 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422 (497)
Q Consensus 356 ~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~ 422 (497)
++. |+.|++++|.++ .++..+. ++|+.|++++|+++.+|. +..+++|+.|++++|++++.
T Consensus 252 l~~-L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 252 PSQ-LNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CTT-CCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTCC
T ss_pred cCC-CCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCCC
Confidence 443 777777777766 3444433 678888888888887765 67788889999998888764
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=5e-28 Score=251.83 Aligned_cols=352 Identities=13% Similarity=0.061 Sum_probs=245.7
Q ss_pred CCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCC----CCCCCCCCCEEeccCCcCccCCc----cccC
Q psy10289 91 GTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFH----PFWGVPSLRYLNLTHNNITSLLD----YNFK 162 (497)
Q Consensus 91 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~ 162 (497)
.++.|++..+.. .....+.....++++|++|++++|.+++.+.. .+.++++|++|++++|.++++.. ..+.
T Consensus 139 ~L~~L~L~~~~~-~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSG-FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEE-EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCC-cCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 478888876520 00111222345789999999999987655422 23467899999999998874433 3345
Q ss_pred CCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCC---CCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccc
Q psy10289 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRIS---KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239 (497)
Q Consensus 163 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~---~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 239 (497)
++++|++|++++|.+..++ ..+..+++|++|++++.... ......+..+++|+.++++++....+ +..+..+++|
T Consensus 218 ~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L 295 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQI 295 (592)
T ss_dssp HCTTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGC
T ss_pred hCCCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCC
Confidence 7889999999999888876 45788899999999854322 11234567788999999988654444 4567778999
Q ss_pred cEEEcCCCCCcccCc-ccccCCCCccEEEccCCCCC-ccChhhhcCCccCceeeccC-----------CcCCCcCcc-cc
Q psy10289 240 KTFKCRSCGLENINP-MMYSILADLIYLDLGYNQLK-YLLADELEDLKKLETLLLDG-----------NHFPVILEK-SF 305 (497)
Q Consensus 240 ~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~-----------n~~~~~~~~-~~ 305 (497)
+.|++++|.++.... ..+..+++|++|+++ +.+. ...+..+..+++|++|++++ +.+++.... ..
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 999999998664332 335778999999998 3333 22334446788999999993 445443222 23
Q ss_pred CCCCCccEEEccCCcccccccccccC-CCCCCEEECc----CCCCCccCcc-----cccccccCCCEEEcCCCc--CCCc
Q psy10289 306 SSQFKLQVLCLKRNRLAKVTTTAFTN-LTNLIELDIS----YNKLDRLEVA-----SFDPIENSLRDLKISGNN--IQLS 373 (497)
Q Consensus 306 ~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~~~~-----~~~~~~~~L~~L~ls~n~--i~~~ 373 (497)
..+++|++|+++.+.++......+.. +++|++|+++ .|.+++.+.. .+..+++ |+.|++++|. ++..
T Consensus 375 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~-L~~L~L~~~~~~l~~~ 453 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK-LRRFAFYLRQGGLTDL 453 (592)
T ss_dssp HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTT-CCEEEEECCGGGCCHH
T ss_pred hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCC-CCEEEEecCCCCccHH
Confidence 45789999999888887655444544 8899999997 5567654221 2344555 9999998654 5544
Q ss_pred chhhHhhcCCCCCEEecCCCcCCcCC-cccccCCCcCcEEeCcCCCCcccc-hhhhccCCCCCEEECCCCcccccc
Q psy10289 374 DVKNVLDKLVKLKALSIADMNYTDIP-KGLFKMNPHLQFLNLSGNNLQDIH-NLLYQSNIKLTHLDLSRNKFKGFD 447 (497)
Q Consensus 374 ~~~~~~~~~~~L~~L~l~~n~i~~l~-~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~ 447 (497)
.+......+++|+.|++++|+++... ...+..+++|++|++++|++++.. +.....+++|++|++++|+++...
T Consensus 454 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~ 529 (592)
T 3ogk_B 454 GLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTG 529 (592)
T ss_dssp HHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTC
T ss_pred HHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHH
Confidence 44444456899999999999987532 234577899999999999987643 334467899999999999987653
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.8e-24 Score=201.60 Aligned_cols=202 Identities=30% Similarity=0.423 Sum_probs=148.9
Q ss_pred CcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCC
Q psy10289 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS 246 (497)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~ 246 (497)
.++++++++.++.+|... .+++++|++++|+++.+.+..|..+++|++|++++|.++.+++..|.++++|+.|++++
T Consensus 18 ~~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCEEEccCCCCCccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 445555555555555432 13455555555555555444555556666666666666555555555666666666666
Q ss_pred CCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccc
Q psy10289 247 CGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT 326 (497)
Q Consensus 247 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 326 (497)
|.++.+++..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.++.+..|..+++|++|++++|.++.+++
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 66666666666667777777777777777777777888888888888888888777778889999999999999999988
Q ss_pred ccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCC
Q psy10289 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQL 372 (497)
Q Consensus 327 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~ 372 (497)
..|..+++|++|++++|+++.++...+..++. |+.|++++|++..
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~l~~N~~~c 219 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEK-LKMLQLQENPWDC 219 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT-CCEEECCSSCBCC
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccC-CCEEEecCCCeeC
Confidence 88999999999999999999998888888877 9999999999763
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-26 Score=231.71 Aligned_cols=235 Identities=21% Similarity=0.255 Sum_probs=146.6
Q ss_pred CCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEecc
Q psy10289 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221 (497)
Q Consensus 142 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 221 (497)
+|++|++++|.++++.+..|..+++|++|++++|.++.+++ |..+++|++|++++|.++++.+ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44555555555444444444445555555555554444333 4445555555555554444321 1455555555
Q ss_pred CCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhc-CCccCceeeccCCcCCCc
Q psy10289 222 YNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE-DLKKLETLLLDGNHFPVI 300 (497)
Q Consensus 222 ~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~ 300 (497)
+|.+.++++. .+++|+.|++++|.++++.+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+.+.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555554432 234566666666666665555566666777777777777766565554 577777777777777765
Q ss_pred CccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhh
Q psy10289 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380 (497)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~ 380 (497)
.+ ...+++|++|++++|.++++++. +..+++|+.|++++|.+.+++. .+..++. |+.|++++|.+....++..+.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~-~l~~l~~-L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEK-ALRFSQN-LEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECT-TCCCCTT-CCEEECTTCCBCHHHHHHHHT
T ss_pred cc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccch-hhccCCC-CCEEEcCCCCCcCcchHHHHH
Confidence 32 33577888888888888877665 7778888888888888887654 3555555 888888888887666667777
Q ss_pred cCCCCCEEecC
Q psy10289 381 KLVKLKALSIA 391 (497)
Q Consensus 381 ~~~~L~~L~l~ 391 (497)
.++.|+.+++.
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 77777777664
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=9.1e-26 Score=227.87 Aligned_cols=234 Identities=17% Similarity=0.256 Sum_probs=120.3
Q ss_pred CCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEcc
Q psy10289 190 DLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLG 269 (497)
Q Consensus 190 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 269 (497)
+|++|++++|.++.+.+..|..+++|++|++++|.+++.++ +..+++|+.|++++|.++.+++ .++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECc
Confidence 44444444444444444444444444444444444443332 4444444444444444443322 1455555555
Q ss_pred CCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccccc-CCCCCCEEECcCCCCCcc
Q psy10289 270 YNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT-NLTNLIELDISYNKLDRL 348 (497)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~~~~L~~L~l~~n~l~~~ 348 (497)
+|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.++++.+..+. .+++|+.|++++|.++++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 5555544332 234555555555555555555555555666666666666554444443 456666666666666555
Q ss_pred CcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCc-ccchhhh
Q psy10289 349 EVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ-DIHNLLY 427 (497)
Q Consensus 349 ~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~ 427 (497)
+... .++. |+.|++++|.++ .++..+..+++|+.|++++|.++.+|.. +..+++|+.|++++|++. +..+..+
T Consensus 185 ~~~~--~l~~-L~~L~Ls~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~ 258 (487)
T 3oja_A 185 KGQV--VFAK-LKTLDLSSNKLA--FMGPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFF 258 (487)
T ss_dssp ECCC--CCTT-CCEEECCSSCCC--EECGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHH
T ss_pred cccc--cCCC-CCEEECCCCCCC--CCCHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHH
Confidence 3222 2333 666666666555 2333455556666666666666666554 355566666666666665 3333445
Q ss_pred ccCCCCCEEECC
Q psy10289 428 QSNIKLTHLDLS 439 (497)
Q Consensus 428 ~~~~~L~~L~l~ 439 (497)
..++.|+.++++
T Consensus 259 ~~l~~L~~l~~~ 270 (487)
T 3oja_A 259 SKNQRVQTVAKQ 270 (487)
T ss_dssp TTCHHHHHHHHH
T ss_pred HhCCCCcEEecc
Confidence 555555555553
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.5e-24 Score=207.88 Aligned_cols=84 Identities=20% Similarity=0.321 Sum_probs=52.9
Q ss_pred CCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEec
Q psy10289 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDL 220 (497)
Q Consensus 141 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 220 (497)
++++.|++++|.++.++ ..+..+++|++|++++|.++.+|.. |..+++|++|++++|.++.+ |..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~~-~~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGLMELPDT-MQQFAGLETLTLARNPLRAL-PASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCC-SCGGGGTTCSEEEEESSCCCCCCSC-GGGGTTCSEEEEESCCCCCC-CGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcC-hhhhhCCCCCEEECCCCCccchhHH-HhccCCCCEEECCCCccccC-cHHHhcCcCCCEEEC
Confidence 56677777777776553 3355566777777777766666543 46666677777776666644 455666666666666
Q ss_pred cCCCCCc
Q psy10289 221 SYNDIVE 227 (497)
Q Consensus 221 ~~n~i~~ 227 (497)
++|.+.+
T Consensus 158 ~~n~~~~ 164 (328)
T 4fcg_A 158 RACPELT 164 (328)
T ss_dssp EEETTCC
T ss_pred CCCCCcc
Confidence 6654433
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=6.8e-25 Score=206.27 Aligned_cols=206 Identities=24% Similarity=0.296 Sum_probs=180.1
Q ss_pred hcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCcc
Q psy10289 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQ 312 (497)
Q Consensus 233 ~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 312 (497)
+.++++++.++++++.++.+++.. .+.++.|++++|.+.+..+..|.++++|++|++++|.++++.+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 667889999999999999887654 36899999999999998888999999999999999999886543 6789999
Q ss_pred EEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCC
Q psy10289 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIAD 392 (497)
Q Consensus 313 ~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~ 392 (497)
+|++++|.+..++. .+..+++|++|++++|+++.+++..|..+++ |+.|++++|.++. -.+..+..+++|+.|++++
T Consensus 81 ~L~Ls~N~l~~l~~-~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~-L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 81 TLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGE-LQELYLKGNELKT-LPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp EEECCSSCCSSCCC-CTTTCTTCCEEECCSSCCCCCCSSTTTTCTT-CCEEECTTSCCCC-CCTTTTTTCTTCCEEECTT
T ss_pred EEECCCCcCCcCch-hhccCCCCCEEECCCCcCcccCHHHHcCCCC-CCEEECCCCCCCc-cChhhcccccCCCEEECCC
Confidence 99999999987754 5788999999999999999998888988887 9999999999873 2345678889999999999
Q ss_pred CcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcccccc
Q psy10289 393 MNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447 (497)
Q Consensus 393 n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 447 (497)
|+++.+|..+|..+++|+.|++++|+++.++...+ ..++|+.|++++|++.+-.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~-~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBCCSG
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhc-ccccCCeEEeCCCCccCcC
Confidence 99999999999999999999999999998877654 5679999999999998754
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=2.9e-24 Score=200.40 Aligned_cols=208 Identities=24% Similarity=0.355 Sum_probs=146.8
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
....+++|++|+++++.++.++ .+..+++|++|++++|+++++ ..+..+++|++|++++|.++.+++..|..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 3556677888888888777654 466777888888888887775 357777788888888888877777777777788
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|++++|+++.+.+..|..+++|++|++++|.++++++..+..+++|+.|++++|.++.+++..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 88888888777776666777777777777777777777766777777777777777777766666666777777777777
Q ss_pred CCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccccccccc
Q psy10289 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT 330 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 330 (497)
.+.+..+..+..+++|+.|++++|.+.+ .+++++.++++.|.+.+..+..+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCccc
Confidence 7776666666666677777776665543 234566666666665554443333
No 77
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.92 E-value=3.3e-24 Score=207.57 Aligned_cols=248 Identities=19% Similarity=0.269 Sum_probs=180.7
Q ss_pred CCCCC-ceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC
Q psy10289 55 MCPYM-CECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG 133 (497)
Q Consensus 55 ~~p~~-~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 133 (497)
.||.. |.|... .+.|...+++.+|. .+ .+++++|++++|+|+.++
T Consensus 1 gCp~~~C~C~~~-----~v~C~~~~Lt~iP~--~l---------------------------~~~l~~L~Ls~N~i~~i~ 46 (350)
T 4ay9_X 1 GCHHRICHCSNR-----VFLCQESKVTEIPS--DL---------------------------PRNAIELRFVLTKLRVIQ 46 (350)
T ss_dssp -CCCSSSEEETT-----EEEEESTTCCSCCT--TC---------------------------CTTCSEEEEESCCCSEEC
T ss_pred CCCCCccEeeCC-----EEEecCCCCCccCc--Cc---------------------------CCCCCEEEccCCcCCCcC
Confidence 48864 999743 68999888877662 11 146788888888999888
Q ss_pred CCCCCCCCCCCEEeccCCcCc-cCCccccCCCCCCcE-EeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcC
Q psy10289 134 FHPFWGVPSLRYLNLTHNNIT-SLLDYNFKGMMNLQE-LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK 211 (497)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~-L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 211 (497)
..+|.++++|++|+|++|++. .+++.+|.+++++++ +.+.+|.++.+++++|..+++|++|++++|++..+.+..+..
T Consensus 47 ~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~ 126 (350)
T 4ay9_X 47 KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 126 (350)
T ss_dssp TTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCC
T ss_pred HHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcc
Confidence 888888999999999988874 466677888888765 556678888888888888889999999998888887666667
Q ss_pred CCCCCEEeccC-CCCCccChhhhcCCc-cccEEEcCCCCCcccCcccccCCCCccEEEcc-CCCCCccChhhhcCCccCc
Q psy10289 212 LSKLKSLDLSY-NDIVEINPEIFKDIQ-ELKTFKCRSCGLENINPMMYSILADLIYLDLG-YNQLKYLLADELEDLKKLE 288 (497)
Q Consensus 212 l~~L~~L~l~~-n~i~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~ 288 (497)
..++..+++.+ +.+..+++..|..+. .++.|++++|.++.+++..|. ..+|++++++ +|.++.+++++|.++++|+
T Consensus 127 ~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~ 205 (350)
T 4ay9_X 127 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPV 205 (350)
T ss_dssp BSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCS
T ss_pred cchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccc
Confidence 77788888855 567777777776664 577788888888887776665 4567777776 4667676667777788888
Q ss_pred eeeccCCcCCCcCccccCCCCCccEEEccCC-cccccccccccCCCCCCEEECcC
Q psy10289 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRN-RLAKVTTTAFTNLTNLIELDISY 342 (497)
Q Consensus 289 ~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~l~~ 342 (497)
+|++++|.++.+.+..+. +|+.|.+.++ .+..+++ +..+++|+.+++++
T Consensus 206 ~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 206 ILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT--LEKLVALMEASLTY 255 (350)
T ss_dssp EEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred hhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence 888888877776554444 3444444332 3444442 56677777777764
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.92 E-value=1.9e-24 Score=197.69 Aligned_cols=208 Identities=20% Similarity=0.333 Sum_probs=125.8
Q ss_pred CCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCC-CccCCcccccCCcCCcEEeccC-CCCCCCCh
Q psy10289 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK-IESIPSSVFMHLSDLRVLSLAH-NRISKLAP 206 (497)
Q Consensus 129 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~i~~~~~ 206 (497)
+++++. +. ++|++|++++|+++++++.+|.++++|++|++++|. ++.+++..|.++++|++|++++ |+++.+.+
T Consensus 23 l~~ip~--~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555543 32 267777777777777766677777777777777775 7777766677777777777776 67776666
Q ss_pred hhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC-CCCccChhhhcCCc
Q psy10289 207 RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN-QLKYLLADELEDLK 285 (497)
Q Consensus 207 ~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 285 (497)
..|.++++|++|++++|.+++++. |..+++|+ .|++|++++| .+.++.+..|.+++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~ 155 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD--LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLC 155 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC--CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTB
T ss_pred HHhCCCCCCCEEeCCCCCCccccc--cccccccc---------------------cccEEECCCCcchhhcCcccccchh
Confidence 666667777777777776666543 44444444 0114555555 44444444455555
Q ss_pred cCc-eeeccCCcCCCcCccccCCCCCccEEEccCCc-ccccccccccCC-CCCCEEECcCCCCCccCcccccccccCCCE
Q psy10289 286 KLE-TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR-LAKVTTTAFTNL-TNLIELDISYNKLDRLEVASFDPIENSLRD 362 (497)
Q Consensus 286 ~L~-~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~ 362 (497)
+|+ +|++++|.+..+.+..|.. ++|++|++++|+ ++.+++..|..+ ++|++|++++|+++.++... ++. |+.
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~---~~~-L~~ 230 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG---LEH-LKE 230 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT---CTT-CSE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH---hcc-Cce
Confidence 555 5555555555444444444 556666666663 666655556666 66666666666666555442 222 666
Q ss_pred EEcCCC
Q psy10289 363 LKISGN 368 (497)
Q Consensus 363 L~ls~n 368 (497)
|+++++
T Consensus 231 L~l~~~ 236 (239)
T 2xwt_C 231 LIARNT 236 (239)
T ss_dssp EECTTC
T ss_pred eeccCc
Confidence 666554
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2e-23 Score=196.27 Aligned_cols=182 Identities=24% Similarity=0.286 Sum_probs=122.7
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+.+++++++++++++.++.++.... ++++.|++++|+++++.+..|.++++|++|++++|.++.++.. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSSCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCCcCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 35667788888888888887765432 5788888888888887777788888888888888888777653 567778
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|++++|+++.+ +..+..+++|++|++++|+++.+++..|.++++|+.|++++|.++.+++..|..+++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 8888888777766 445666777777777777777666666666666666666666666655555555555555555555
Q ss_pred CCCccChhhhcCCccCceeeccCCcCCC
Q psy10289 272 QLKYLLADELEDLKKLETLLLDGNHFPV 299 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~ 299 (497)
+++++++..|..+++|+.|++++|.+..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 5555444444445555555555544443
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.2e-24 Score=203.04 Aligned_cols=227 Identities=22% Similarity=0.275 Sum_probs=173.7
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
.++..+++..+.+.+.. ....+++|+.|++++|.++.+. .+..+++|++|++++|.++.++ .+..+++|++|++
T Consensus 19 ~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L 92 (272)
T 3rfs_A 19 AETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEEC
T ss_pred HHHHHHHhcCccccccc--ccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEEC
Confidence 45556666666666542 3456788899999888887763 4778888889999888888764 3678888888888
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCcc
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (497)
++|.++.+.+..|..+++|++|++++|.++++++..|.++++|+.|++++|.++.+++..+..+++|++|++++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCcc
Confidence 88888888777778888888888888888888887788888888888888888888777777788888888888888877
Q ss_pred ChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccccc
Q psy10289 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI 356 (497)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 356 (497)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+++|+.+++..|.+.+..+..+..+
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 7777777888888888888887777766777778888888877654 235667777777777766555554444
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.2e-24 Score=208.72 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=138.0
Q ss_pred EeccCCCCccCCcccccCCcCCcEEeccCCCCCCCCh----hhhcCCC-CCCEEeccCCCCCccChhhhcCC-----ccc
Q psy10289 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP----RLFLKLS-KLKSLDLSYNDIVEINPEIFKDI-----QEL 239 (497)
Q Consensus 170 L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~~-----~~L 239 (497)
+++++|.++...+..+...++|++|++++|.++...+ ..|..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666665444444444446666666666666555 4555565 66666666666666555444432 455
Q ss_pred cEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCC-ccCceeeccCCcCCCcCcccc----CC-CCCccE
Q psy10289 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL-KKLETLLLDGNHFPVILEKSF----SS-QFKLQV 313 (497)
Q Consensus 240 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~ 313 (497)
+.|++++|.++...+..+.. .+..+ ++|++|++++|.+.+..+..+ .. +++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~--------------------~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVK--------------------TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHH--------------------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHH--------------------HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 55555555544433321111 12222 455555555555544433222 22 245666
Q ss_pred EEccCCccccccc----ccccCCC-CCCEEECcCCCCCccCcccccc----cccCCCEEEcCCCcCCCcc---hhhHhhc
Q psy10289 314 LCLKRNRLAKVTT----TAFTNLT-NLIELDISYNKLDRLEVASFDP----IENSLRDLKISGNNIQLSD---VKNVLDK 381 (497)
Q Consensus 314 L~l~~n~l~~~~~----~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~----~~~~L~~L~ls~n~i~~~~---~~~~~~~ 381 (497)
|++++|.++.... ..+..++ +|++|++++|++++.....+.. .+.+|+.|++++|.++... ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 6666665553222 1223333 6666666666666555433322 2223677777777665321 3344444
Q ss_pred -CCCCCEEecCCCcCCcCCc----ccccCCCcCcEEeCcCCCCcccchh-------hhccCCCCCEEECCCCccccc
Q psy10289 382 -LVKLKALSIADMNYTDIPK----GLFKMNPHLQFLNLSGNNLQDIHNL-------LYQSNIKLTHLDLSRNKFKGF 446 (497)
Q Consensus 382 -~~~L~~L~l~~n~i~~l~~----~~~~~~~~L~~L~Ls~n~l~~~~~~-------~~~~~~~L~~L~l~~n~l~~~ 446 (497)
.++|+.|++++|.++..+. ..+..+++|+.|++++|++.++.+. .+..+++|++||+++|++...
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3467777777777766544 2345567777777777775554432 344566777777777776654
No 82
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=4.1e-25 Score=229.85 Aligned_cols=327 Identities=14% Similarity=0.086 Sum_probs=229.8
Q ss_pred cccCCCCCcEEEccCCCCCccCCC----CCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCc---cCCccc
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFH----PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE---SIPSSV 184 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~ 184 (497)
.+.++++|++|++++|.++.+... .+.++++|++|++++|.+.++ +..+.++++|++|+++..... .-....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 265 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMN 265 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-HHHHHHCTTCCEEEECBCCCCTTCTTSSSC
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-HHHHhhhhHHHhhcccccccccchHHHHHH
Confidence 456788999999999988744322 235788999999999988876 466788899999999753221 111123
Q ss_pred ccCCcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccCh-hhhcCCccccEEEcCCCCCcc-cCcccccCCCC
Q psy10289 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP-EIFKDIQELKTFKCRSCGLEN-INPMMYSILAD 262 (497)
Q Consensus 185 ~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~l~~ 262 (497)
+..+++|+.|+++++....+ +..+..+++|++|++++|.++.... ..+..+++|+.|++. +.+.. ..+.....+++
T Consensus 266 l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~ 343 (592)
T 3ogk_B 266 LVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQ 343 (592)
T ss_dssp CCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTT
T ss_pred hhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCC
Confidence 56778899999988655444 5667778899999999998665333 346788999999998 33332 22233355788
Q ss_pred ccEEEccC-----------CCCCccCh-hhhcCCccCceeeccCCcCCCcCccccCC-CCCccEEEcc----CCcccccc
Q psy10289 263 LIYLDLGY-----------NQLKYLLA-DELEDLKKLETLLLDGNHFPVILEKSFSS-QFKLQVLCLK----RNRLAKVT 325 (497)
Q Consensus 263 L~~L~l~~-----------n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~l~~~~ 325 (497)
|++|++++ +.+++... .....+++|++|++..+.+++.....+.. +++|++|+++ .|.+++.+
T Consensus 344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p 423 (592)
T 3ogk_B 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLP 423 (592)
T ss_dssp CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCC
T ss_pred CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCch
Confidence 99999993 55554322 22456889999999888887765555544 7889999996 56666542
Q ss_pred -----cccccCCCCCCEEECcCCC--CCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcC
Q psy10289 326 -----TTAFTNLTNLIELDISYNK--LDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI 398 (497)
Q Consensus 326 -----~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l 398 (497)
+..+.++++|++|++++|. +++.....+....++|+.|++++|.++...++..+..+++|+.|++++|.++.-
T Consensus 424 ~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 424 LDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp CHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred HHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 2235678999999997653 555444444442334999999999988666777778899999999999987632
Q ss_pred -CcccccCCCcCcEEeCcCCCCcccchhhh-ccCCCCCEEECCCC
Q psy10289 399 -PKGLFKMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRN 441 (497)
Q Consensus 399 -~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n 441 (497)
.......+++|+.|++++|++++.....+ ..+|.++...+..+
T Consensus 504 ~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 504 AIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 22334567999999999999887654433 35677766665554
No 83
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=6.8e-26 Score=235.85 Aligned_cols=325 Identities=16% Similarity=0.095 Sum_probs=163.0
Q ss_pred ccCCCCCcEEEccCCCCCccCCCCC----CCCCCCCEEeccCCcCccCCcccc----CCCCCCcEEeccCC-CCccCCcc
Q psy10289 113 FQQFQHLEELHITNSFIPAIGFHPF----WGVPSLRYLNLTHNNITSLLDYNF----KGMMNLQELYLDFN-KIESIPSS 183 (497)
Q Consensus 113 ~~~~~~L~~L~l~~~~i~~~~~~~~----~~l~~L~~L~l~~n~l~~~~~~~~----~~l~~L~~L~L~~n-~~~~~~~~ 183 (497)
+.++++|++|++++|.+++.+...+ ..+++|++|++++|. ..+....+ ..+++|++|++++| .+..++ .
T Consensus 152 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~ 229 (594)
T 2p1m_B 152 AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-T 229 (594)
T ss_dssp HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-H
T ss_pred HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-H
Confidence 3356666666666666554332222 245566666666654 22211111 23466666666665 333322 2
Q ss_pred cccCCcCCcEEeccCCCC-------CCCChhhhcCCCCCCEE-eccCCCCCccChhhhcCCccccEEEcCCCCCcccC-c
Q psy10289 184 VFMHLSDLRVLSLAHNRI-------SKLAPRLFLKLSKLKSL-DLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN-P 254 (497)
Q Consensus 184 ~~~~l~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L-~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~ 254 (497)
.+..+++|++|+++.+.. .++ +..+.++++|+.+ .+.+.....+ +..+..+++|+.|++++|.++... .
T Consensus 230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~~~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~ 307 (594)
T 2p1m_B 230 LLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAVPAYL-PAVYSVCSRLTTLNLSYATVQSYDLV 307 (594)
T ss_dssp HHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCCGGGG-GGGHHHHTTCCEEECTTCCCCHHHHH
T ss_pred HHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccchhhH-HHHHHhhCCCCEEEccCCCCCHHHHH
Confidence 344556666666544321 111 1234455555555 2322221111 222334566777777776654321 1
Q ss_pred ccccCCCCccEEEccCCCCCcc-ChhhhcCCccCceeeccC---------CcCCCcCccccC-CCCCccEEEccCCcccc
Q psy10289 255 MMYSILADLIYLDLGYNQLKYL-LADELEDLKKLETLLLDG---------NHFPVILEKSFS-SQFKLQVLCLKRNRLAK 323 (497)
Q Consensus 255 ~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~~~~~~~~~~~-~~~~L~~L~l~~n~l~~ 323 (497)
..+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+. .+++|++|.+..+.++.
T Consensus 308 ~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~ 386 (594)
T 2p1m_B 308 KLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN 386 (594)
T ss_dssp HHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH
T ss_pred HHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH
Confidence 22345667777777665 3211 111223466677776632 223322211222 35667777666666654
Q ss_pred ccccccc-CCCCCCEEECc--C----CCCCccCcc-----cccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecC
Q psy10289 324 VTTTAFT-NLTNLIELDIS--Y----NKLDRLEVA-----SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIA 391 (497)
Q Consensus 324 ~~~~~~~-~~~~L~~L~l~--~----n~l~~~~~~-----~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~ 391 (497)
.....+. .+++|+.|+++ + +.++..+.. .+..+++ |+.|++++ .++...+......+++|+.|+++
T Consensus 387 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~-L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 387 AALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD-LRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT-CCEEECCS-SCCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC-ccEEeecC-cccHHHHHHHHHhchhccEeecc
Confidence 4333332 46777777777 3 344432211 1233443 77777766 45533333333346777777777
Q ss_pred CCcCCcCCccc-ccCCCcCcEEeCcCCCCcccchh-hhccCCCCCEEECCCCccc
Q psy10289 392 DMNYTDIPKGL-FKMNPHLQFLNLSGNNLQDIHNL-LYQSNIKLTHLDLSRNKFK 444 (497)
Q Consensus 392 ~n~i~~l~~~~-~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~ 444 (497)
+|.++...... ...+++|+.|++++|++++.... ....+++|++|++++|+++
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 77765332221 24567777777777777544332 3344677777777777663
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=1e-22 Score=193.22 Aligned_cols=197 Identities=20% Similarity=0.312 Sum_probs=132.8
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+..+++|++|+++++.++.++ .+..+++|++|++++|+++++.+ +..+++|++|++++|.++.++ .+..+++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L 109 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS--AIAGLQSI 109 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG--GGTTCTTC
T ss_pred cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch--hhcCCCCC
Confidence 3456778888888888877764 46777888888888888877754 777888888888888877765 36777888
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|++++|+++.+. .+..+++|++|++++|.+.++++ +..+++|+.|++++|.++.+++ +..+++|++|++++|
T Consensus 110 ~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 88888888777763 26777778888887777777654 6666777777777776665544 555666666666666
Q ss_pred CCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCccccc
Q psy10289 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV 324 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 324 (497)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.++..
T Consensus 184 ~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred ccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 6655432 5555555555555555554432 44555555555555555443
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.3e-22 Score=185.17 Aligned_cols=159 Identities=28% Similarity=0.405 Sum_probs=125.2
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
+++++|++++|.++.+.+..|.++++|++|++++|+++++.+..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 46788888888888887777888888888888888888887777888888888888888888888777778888888888
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCc
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (497)
++|+++.+.+..|..+++|++|++++|.++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8888887766667777888888888888877777777777777777777777777777667777777777777777654
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.8e-24 Score=206.44 Aligned_cols=260 Identities=19% Similarity=0.213 Sum_probs=166.6
Q ss_pred EEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCc----ccccCCc-CCcEEeccCCCCCCCChhhhcCC-----CC
Q psy10289 145 YLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS----SVFMHLS-DLRVLSLAHNRISKLAPRLFLKL-----SK 214 (497)
Q Consensus 145 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~-~L~~L~l~~n~i~~~~~~~~~~l-----~~ 214 (497)
++.+++|.+++..+..+...++|++|++++|.+...+. ..|..++ +|++|++++|.++...+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998877777777779999999999999887 6788888 99999999999998877777664 89
Q ss_pred CCEEeccCCCCCccChhhhcC----C-ccccEEEcCCCCCcccCccccc----C-CCCccEEEccCCCCCccChhhhcCC
Q psy10289 215 LKSLDLSYNDIVEINPEIFKD----I-QELKTFKCRSCGLENINPMMYS----I-LADLIYLDLGYNQLKYLLADELEDL 284 (497)
Q Consensus 215 L~~L~l~~n~i~~~~~~~~~~----~-~~L~~L~l~~~~l~~~~~~~~~----~-l~~L~~L~l~~n~l~~~~~~~~~~l 284 (497)
|++|++++|.+++..+..+.. . ++|+.|++++|.++......+. . .++|++|++++|.+.+.....+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-- 159 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-- 159 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH--
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH--
Confidence 999999999999887764443 3 6778888887777766553322 2 24566666666665543322221
Q ss_pred ccCceeeccCCcCCCcCccccCCCC-CccEEEccCCcccccccc----cccCC-CCCCEEECcCCCCCccCcc----ccc
Q psy10289 285 KKLETLLLDGNHFPVILEKSFSSQF-KLQVLCLKRNRLAKVTTT----AFTNL-TNLIELDISYNKLDRLEVA----SFD 354 (497)
Q Consensus 285 ~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~----~~~~~-~~L~~L~l~~n~l~~~~~~----~~~ 354 (497)
..+...+ +|++|++++|.++...+. .+..+ ++|++|++++|.+++.... .+.
T Consensus 160 ------------------~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 160 ------------------QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp ------------------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred ------------------HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 1111122 455555555555443332 22233 3566666666655543222 122
Q ss_pred ccccCCCEEEcCCCcCCCcch---hhHhhcCCCCCEEecCCCcCCcCCcc-------cccCCCcCcEEeCcCCCCcccch
Q psy10289 355 PIENSLRDLKISGNNIQLSDV---KNVLDKLVKLKALSIADMNYTDIPKG-------LFKMNPHLQFLNLSGNNLQDIHN 424 (497)
Q Consensus 355 ~~~~~L~~L~ls~n~i~~~~~---~~~~~~~~~L~~L~l~~n~i~~l~~~-------~~~~~~~L~~L~Ls~n~l~~~~~ 424 (497)
..+.+|+.|++++|.++.... ...+..+++|+.|++++|.+..+... .+..+++|+.|++++|++....+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 222236666666666654222 33345566677777777764444332 35667788888888888876543
No 87
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=5.4e-22 Score=182.70 Aligned_cols=180 Identities=26% Similarity=0.425 Sum_probs=143.1
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
+..++++++++.++.++.. +. ++++.|++++|+++++.+..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 3567888888888888653 22 57889999999998888888888889999999998888888887888888888888
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCcc
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (497)
++|+++.+.+..|..+++|++|++++|.++.+++..|.++++|+.|++++|.++.+++..+..+++|++|++++|.+.+.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 88888888777788888888888888888888777777778888888888877777776677777777777777777776
Q ss_pred ChhhhcCCccCceeeccCCcCCC
Q psy10289 277 LADELEDLKKLETLLLDGNHFPV 299 (497)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~~~~ 299 (497)
.+..+..+++|+.|++++|.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CHHHHhCCCCCCEEEeeCCceeC
Confidence 66667777777777777776654
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.6e-22 Score=190.47 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=170.1
Q ss_pred EEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCC
Q psy10289 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201 (497)
Q Consensus 122 L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i 201 (497)
+.+..+.++++. .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.+++ +..+++|++|++++|++
T Consensus 24 ~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC
Confidence 344445555432 3446789999999999998874 57889999999999999998887 78999999999999999
Q ss_pred CCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhh
Q psy10289 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADEL 281 (497)
Q Consensus 202 ~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 281 (497)
+.+ ..+..+++|++|++++|.++++++ +..+++|+.|++++|.++.+++ +..+++|++|++++|.+.+..+ +
T Consensus 98 ~~~--~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 98 KNV--SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp SCC--GGGTTCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred CCc--hhhcCCCCCCEEECCCCCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--h
Confidence 887 358889999999999999988754 8888999999999998887765 6778888999998888887544 7
Q ss_pred cCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCc
Q psy10289 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350 (497)
Q Consensus 282 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 350 (497)
..+++|+.|++++|.+.+..+ +..+++|++|++++|.+.++++ +..+++|++|++++|.++..+.
T Consensus 170 ~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred cCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 888888888888888877654 6777888888888888887764 7788888888888888776543
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=193.81 Aligned_cols=200 Identities=18% Similarity=0.132 Sum_probs=126.6
Q ss_pred ccEEEcCCCCCcccCcccc--cCCCCccEEEccCCCCCccCh----hhhcCCccCceeeccCCcCCCcCccccCCCCCcc
Q psy10289 239 LKTFKCRSCGLENINPMMY--SILADLIYLDLGYNQLKYLLA----DELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQ 312 (497)
Q Consensus 239 L~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 312 (497)
|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444443333333 444555555555555543221 2344566677777777777666666666777777
Q ss_pred EEEccCCcccc---ccc-ccccCCCCCCEEECcCCCCCccCcc---cccccccCCCEEEcCCCcCCCcchhhHhhcC---
Q psy10289 313 VLCLKRNRLAK---VTT-TAFTNLTNLIELDISYNKLDRLEVA---SFDPIENSLRDLKISGNNIQLSDVKNVLDKL--- 382 (497)
Q Consensus 313 ~L~l~~n~l~~---~~~-~~~~~~~~L~~L~l~~n~l~~~~~~---~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~--- 382 (497)
+|++++|++.+ +.. ..+..+++|++|++++|+++.++.. .+..++. |++|++++|.++.. .|..+..+
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~-L~~L~Ls~N~l~~~-~p~~~~~~~~~ 250 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQ-PHSLDLSHNSLRAT-VNPSAPRCMWS 250 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCC-CSSEECTTSCCCCC-CCSCCSSCCCC
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCC-CCEEECCCCCCCcc-chhhHHhccCc
Confidence 77777776543 221 2235667777777777777654322 1233444 77777777776632 23333444
Q ss_pred CCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcccc
Q psy10289 383 VKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445 (497)
Q Consensus 383 ~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 445 (497)
++|+.|++++|+++.+|..++ ++|+.|++++|++++++. +..+++|+.|++++|++++
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 688888898888888887653 789999999999998744 5678899999999998875
No 90
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2.3e-22 Score=194.68 Aligned_cols=239 Identities=16% Similarity=0.203 Sum_probs=183.6
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCc-cCCcccccCCcCCcE-Eecc
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRV-LSLA 197 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~-L~l~ 197 (497)
++++.+++++++++... .+++++|+|++|+|+.+++.+|.++++|++|+|++|.+. .++.++|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57888889999987543 257999999999999998889999999999999999875 578888899988775 5666
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCC-CCCcccCcccccCCC-CccEEEccCCCCCc
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS-CGLENINPMMYSILA-DLIYLDLGYNQLKY 275 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 275 (497)
+|+++.+.+..|..+++|++|++++|.+..+++..+....++..+++.+ +.+..++...|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7889998888899999999999999999988877777777788888855 567777777776664 57888888888887
Q ss_pred cChhhhcCCccCceeeccC-CcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCC-CCCccCcccc
Q psy10289 276 LLADELEDLKKLETLLLDG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN-KLDRLEVASF 353 (497)
Q Consensus 276 ~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~ 353 (497)
+.+.++. ..+++++++.+ |.+..+.+..|..+++|++|++++|+++.+++..+. +|+.|.+.++ .++.++ .+
T Consensus 169 i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP--~l 242 (350)
T 4ay9_X 169 IHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLP--TL 242 (350)
T ss_dssp ECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCC--CT
T ss_pred CChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCC--Cc
Confidence 7666554 45788888864 667776667788888888888888888888766544 4444444433 355554 35
Q ss_pred cccccCCCEEEcCCC
Q psy10289 354 DPIENSLRDLKISGN 368 (497)
Q Consensus 354 ~~~~~~L~~L~ls~n 368 (497)
..+++ |+.++++++
T Consensus 243 ~~l~~-L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVA-LMEASLTYP 256 (350)
T ss_dssp TTCCS-CCEEECSCH
T ss_pred hhCcC-hhhCcCCCC
Confidence 55555 888887654
No 91
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.5e-22 Score=176.72 Aligned_cols=188 Identities=22% Similarity=0.329 Sum_probs=139.7
Q ss_pred CCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCC
Q psy10289 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFH 135 (497)
Q Consensus 56 ~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 135 (497)
||..|.|... .+.|...++..++. .-.+++++|++++|.++.++..
T Consensus 1 Cp~~C~C~~~-----~v~c~~~~l~~~p~-----------------------------~~~~~l~~L~l~~n~l~~~~~~ 46 (208)
T 2o6s_A 1 CPSRCSCSGT-----TVECYSQGRTSVPT-----------------------------GIPAQTTYLDLETNSLKSLPNG 46 (208)
T ss_dssp CCTTCEEETT-----EEECCSSCCSSCCS-----------------------------CCCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCCEECCC-----EEEecCCCccCCCC-----------------------------CCCCCCcEEEcCCCccCcCChh
Confidence 8899999633 57777766554431 1124788888888888888877
Q ss_pred CCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCC
Q psy10289 136 PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL 215 (497)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 215 (497)
.|.++++|++|++++|+++.+.+..|.++++|++|++++|.++.+++..|..+++|++|++++|+++.+.+..|..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 126 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcC
Confidence 78888888888888888888877778888888888888888888887777888888888888888887766667778888
Q ss_pred CEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCC
Q psy10289 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284 (497)
Q Consensus 216 ~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 284 (497)
++|++++|.++++++..+..+++|+.|++++|.+.. .+++|+.|+++.|.+.+..|..++.+
T Consensus 127 ~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 127 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 888888888877777667777777777777775442 24456666666666665555554443
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.88 E-value=3.6e-24 Score=222.78 Aligned_cols=327 Identities=15% Similarity=0.150 Sum_probs=193.1
Q ss_pred CCCCCcEEEccCCCCCccCCCCCC-CCCCCCEEeccCC-cCccC-CccccCCCCCCcEEeccCCCCccCCcccc----cC
Q psy10289 115 QFQHLEELHITNSFIPAIGFHPFW-GVPSLRYLNLTHN-NITSL-LDYNFKGMMNLQELYLDFNKIESIPSSVF----MH 187 (497)
Q Consensus 115 ~~~~L~~L~l~~~~i~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~~~~----~~ 187 (497)
.+++|++|+++++.+++.....+. .+++|++|++++| .++.. .+..+.++++|++|++++|.++......+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 455666666666655544333332 4556666666665 33321 11222345666666666665443322212 24
Q ss_pred CcCCcEEeccCCCCCCCChhh----hcCCCCCCEEeccCC-CCCccChhhhcCCccccEEEcCCCC--------------
Q psy10289 188 LSDLRVLSLAHNRISKLAPRL----FLKLSKLKSLDLSYN-DIVEINPEIFKDIQELKTFKCRSCG-------------- 248 (497)
Q Consensus 188 l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~~~-------------- 248 (497)
+++|++|++++|. ..+.... +..+++|++|++++| .+.+ .+..+..+++|+.|++..+.
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 4566666666654 2221111 133466666666655 2222 23334445555555543321
Q ss_pred ------------CcccC----cccccCCCCccEEEccCCCCCccC-hhhhcCCccCceeeccCCcCCCcC-ccccCCCCC
Q psy10289 249 ------------LENIN----PMMYSILADLIYLDLGYNQLKYLL-ADELEDLKKLETLLLDGNHFPVIL-EKSFSSQFK 310 (497)
Q Consensus 249 ------------l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~ 310 (497)
+.... +..+..+++|++|++++|.+++.. ...+..+++|++|++++| +.... +.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 11111 122234688999999999876432 233568899999999987 33221 222234788
Q ss_pred ccEEEccC---------Ccccccccccc-cCCCCCCEEECcCCCCCccCcccccc-cccCCCEEEcC--C----CcCC--
Q psy10289 311 LQVLCLKR---------NRLAKVTTTAF-TNLTNLIELDISYNKLDRLEVASFDP-IENSLRDLKIS--G----NNIQ-- 371 (497)
Q Consensus 311 L~~L~l~~---------n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~L~~L~ls--~----n~i~-- 371 (497)
|++|++++ +.++......+ ..+++|++|.++.+.+++.....+.. +++ |+.|+++ + +.++
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~-L~~L~L~~~~~~~~~~l~~~ 418 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPN-MTRFRLCIIEPKAPDYLTLE 418 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTT-CCEEEEEESSTTCCCTTTCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCC-cceeEeecccCCCcccccCC
Confidence 99998843 34443222222 34889999999888888766555543 555 9999999 4 4455
Q ss_pred --CcchhhHhhcCCCCCEEecCCCcCCcCCcccc-cCCCcCcEEeCcCCCCcccchhhh-ccCCCCCEEECCCCccccc
Q psy10289 372 --LSDVKNVLDKLVKLKALSIADMNYTDIPKGLF-KMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRNKFKGF 446 (497)
Q Consensus 372 --~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~-~~~~~L~~L~Ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~l~~~ 446 (497)
...++..+..+++|+.|++++ .++......+ ..+++|+.|++++|.+++.....+ ..+++|++|++++|+++..
T Consensus 419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 234455578889999999987 5553322222 237899999999999987665555 6799999999999998653
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=193.16 Aligned_cols=200 Identities=18% Similarity=0.112 Sum_probs=108.6
Q ss_pred CCcEEeccCCCCccCCcccc--cCCcCCcEEeccCCCCCCCCh----hhhcCCCCCCEEeccCCCCCccChhhhcCCccc
Q psy10289 166 NLQELYLDFNKIESIPSSVF--MHLSDLRVLSLAHNRISKLAP----RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239 (497)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~l~~n~i~~~~~----~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L 239 (497)
+|++|++++|.+....+..+ ..+++|++|++++|.++...+ ..+..+++|++|++++|.+..+++..|..+++|
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L 171 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL 171 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence 34444444444443333323 444445555555554443211 222344555555555555555554455555555
Q ss_pred cEEEcCCCCCcc---cC-cccccCCCCccEEEccCCCCCccChh---hhcCCccCceeeccCCcCCCcCccccCCC---C
Q psy10289 240 KTFKCRSCGLEN---IN-PMMYSILADLIYLDLGYNQLKYLLAD---ELEDLKKLETLLLDGNHFPVILEKSFSSQ---F 309 (497)
Q Consensus 240 ~~L~l~~~~l~~---~~-~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l~~n~~~~~~~~~~~~~---~ 309 (497)
+.|++++|.+.+ ++ ...+..+++|++|++++|.++..... .+..+++|++|++++|.+.+..|..+..+ +
T Consensus 172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred CEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 555555555432 11 11223456666666666666532211 24556677777777777766655444444 5
Q ss_pred CccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCC
Q psy10289 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~ 371 (497)
+|++|++++|+++.++.. + .++|++|++++|++++++. +..++. |+.|++++|+++
T Consensus 252 ~L~~L~Ls~N~l~~lp~~-~--~~~L~~L~Ls~N~l~~~~~--~~~l~~-L~~L~L~~N~l~ 307 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKG-L--PAKLRVLDLSSNRLNRAPQ--PDELPE-VDNLTLDGNPFL 307 (310)
T ss_dssp TCCCEECCSSCCCSCCSC-C--CSCCSCEECCSCCCCSCCC--TTSCCC-CSCEECSSTTTS
T ss_pred cCCEEECCCCCCCchhhh-h--cCCCCEEECCCCcCCCCch--hhhCCC-ccEEECcCCCCC
Confidence 777777777777766443 2 2677777777777776532 445554 777777777765
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.5e-23 Score=204.45 Aligned_cols=243 Identities=19% Similarity=0.238 Sum_probs=108.4
Q ss_pred ccCCCCCCcEEeccCCCCccCCc----ccccCCcCCcEEeccCCCCCCC---Chhhh-------cCCCCCCEEeccCCCC
Q psy10289 160 NFKGMMNLQELYLDFNKIESIPS----SVFMHLSDLRVLSLAHNRISKL---APRLF-------LKLSKLKSLDLSYNDI 225 (497)
Q Consensus 160 ~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~~L~~L~l~~n~i~~~---~~~~~-------~~l~~L~~L~l~~n~i 225 (497)
.+..+++|++|++++|.+..... ..|..+++|++|++++|.+..+ .|..+ ..+++|++|++++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 34455666666666665554321 1244556666666666543322 12222 4455555555555555
Q ss_pred Ccc----ChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCC---------ccCceeec
Q psy10289 226 VEI----NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL---------KKLETLLL 292 (497)
Q Consensus 226 ~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---------~~L~~L~l 292 (497)
... .+..+..+++|+.|++++|.++...+..+. ..+..+ ++|++|++
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~--------------------~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA--------------------RALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHH--------------------HHHHHHHHHHHHHTCCCCCEEEC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHH--------------------HHHHHHhhhhhcccCCCCcEEEC
Confidence 441 222334444444444444444322111111 111111 34444444
Q ss_pred cCCcCCCc-Cc---cccCCCCCccEEEccCCcccc-----cccccccCCCCCCEEECcCCCCCc----cCcccccccccC
Q psy10289 293 DGNHFPVI-LE---KSFSSQFKLQVLCLKRNRLAK-----VTTTAFTNLTNLIELDISYNKLDR----LEVASFDPIENS 359 (497)
Q Consensus 293 ~~n~~~~~-~~---~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~ 359 (497)
++|.+... .+ ..+..+++|++|++++|.+.. +.+..+..+++|++|++++|.++. ..+..+..++.
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~- 245 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN- 245 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT-
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC-
Confidence 44444311 11 122334444455555444431 112234445555555555555431 11223333333
Q ss_pred CCEEEcCCCcCCCc---chhhHhhc--CCCCCEEecCCCcCCc-----CCcccccCCCcCcEEeCcCCCCcccc
Q psy10289 360 LRDLKISGNNIQLS---DVKNVLDK--LVKLKALSIADMNYTD-----IPKGLFKMNPHLQFLNLSGNNLQDIH 423 (497)
Q Consensus 360 L~~L~ls~n~i~~~---~~~~~~~~--~~~L~~L~l~~n~i~~-----l~~~~~~~~~~L~~L~Ls~n~l~~~~ 423 (497)
|+.|++++|.++.. .++..+.. +++|+.|++++|.++. +|..++.++++|+.|++++|++++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555554421 12233322 5556666666665554 55544455566666666666666554
No 95
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.86 E-value=1.6e-20 Score=183.99 Aligned_cols=265 Identities=15% Similarity=0.265 Sum_probs=156.1
Q ss_pred CCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEE
Q psy10289 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVL 194 (497)
Q Consensus 115 ~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 194 (497)
.+..++.+.+. +.++.|+..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.++..+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip-~~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILP-NSVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECC-TTCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEEC-CccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 34556666664 34566666666654 5666666544 666666666663 466666664 4666666666666666666
Q ss_pred eccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC
Q psy10289 195 SLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274 (497)
Q Consensus 195 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (497)
++++|+++.+...+|. +.+|+.+.+..+ +..+...+|.++++|+.+.+.. +++.+...+|.+ .+|+.+.+. +.++
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeC-CCcc
Confidence 6666666666555555 456666666533 5666666666666666666665 355566666665 566666663 3455
Q ss_pred ccChhhhcCCccCceeeccCCcCC-----CcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccC
Q psy10289 275 YLLADELEDLKKLETLLLDGNHFP-----VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349 (497)
Q Consensus 275 ~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 349 (497)
.+...+|.+|++|+.+.+.++.+. .+.+.+|.+|++|+.+++. +.++.+...+|.+|++|+.+.+..+ ++.++
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 555566666666666666655443 3455566666666666666 3466666666666666666666433 56666
Q ss_pred cccccccccCCCEEEcCCCcCCCcchhhHhhcCC-CCCEEecCCCc
Q psy10289 350 VASFDPIENSLRDLKISGNNIQLSDVKNVLDKLV-KLKALSIADMN 394 (497)
Q Consensus 350 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~-~L~~L~l~~n~ 394 (497)
..+|..+ + |+.+++.+|..... ....|..++ +++.|++..+.
T Consensus 339 ~~aF~~~-~-L~~l~l~~n~~~~l-~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 339 FSAFNNT-G-IKEVKVEGTTPPQV-FEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp TTSSSSS-C-CCEEEECCSSCCBC-CCSSCCCSCTTCCEEEECGGG
T ss_pred HHhCCCC-C-CCEEEEcCCCCccc-ccccccCCCCCccEEEeCHHH
Confidence 6666666 4 66666666654311 123344442 45566665554
No 96
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.86 E-value=1.9e-20 Score=183.42 Aligned_cols=265 Identities=13% Similarity=0.211 Sum_probs=196.7
Q ss_pred CCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCE
Q psy10289 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKS 217 (497)
Q Consensus 138 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 217 (497)
..+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++.++..+|.++ +|+.+.+.. .++.+...+|.+|++|+.
T Consensus 110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCe
Confidence 4457788888864 5888888888885 7999998776 888888888885 699998886 678887888888999999
Q ss_pred EeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcC
Q psy10289 218 LDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297 (497)
Q Consensus 218 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 297 (497)
++++.|.++.++..+|. ..+|+.+.+.. .++.+...+|.++++|+.+++..+ ++.+...+|.+ .+|+.+.+. +.+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 99998888888888887 57899998884 488888888988999999998864 66677788887 688888885 457
Q ss_pred CCcCccccCCCCCccEEEccCCccc-----ccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCC
Q psy10289 298 PVILEKSFSSQFKLQVLCLKRNRLA-----KVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQL 372 (497)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~ 372 (497)
..+...+|.++++|+.+++.++.+. .+...+|.+|++|+.+++. +.++.++..+|..+.. |+.+.+..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~-L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRK-VTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCS-CCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCC-ccEEEECcc-ccE
Confidence 7777888888999999998887665 5777888899999999998 4588888888887766 777777554 221
Q ss_pred cchhhHhhcCCCCCEEecCCCcCCcCCcccccCCC-cCcEEeCcCC
Q psy10289 373 SDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP-HLQFLNLSGN 417 (497)
Q Consensus 373 ~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~-~L~~L~Ls~n 417 (497)
.. ..+|..+ +|+.+++.+|.+..++...|.+++ +++.|.+..+
T Consensus 337 I~-~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 337 IN-FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp EC-TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred Ec-HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 00 2334444 455555555444444444444442 3444444443
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.3e-23 Score=201.10 Aligned_cols=245 Identities=20% Similarity=0.193 Sum_probs=169.7
Q ss_pred ccCCcCCcEEeccCCCCCCCChhh----hcCCCCCCEEeccCCCCCccC---hhhhcCCccccEEEcCCCCCcccCcccc
Q psy10289 185 FMHLSDLRVLSLAHNRISKLAPRL----FLKLSKLKSLDLSYNDIVEIN---PEIFKDIQELKTFKCRSCGLENINPMMY 257 (497)
Q Consensus 185 ~~~l~~L~~L~l~~n~i~~~~~~~----~~~l~~L~~L~l~~n~i~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 257 (497)
+..+++|++|++++|.++...+.. +..+++|++|++++|.+..+. +..+..+ ...+
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l-----------------~~~l 90 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL-----------------LQAL 90 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH-----------------HHHH
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH-----------------HHHH
Confidence 455666777777777666543322 445666666666665443321 1111100 0123
Q ss_pred cCCCCccEEEccCCCCCc----cChhhhcCCccCceeeccCCcCCCcCccccC----CC---------CCccEEEccCCc
Q psy10289 258 SILADLIYLDLGYNQLKY----LLADELEDLKKLETLLLDGNHFPVILEKSFS----SQ---------FKLQVLCLKRNR 320 (497)
Q Consensus 258 ~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~----~~---------~~L~~L~l~~n~ 320 (497)
..+++|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456777777777777765 3455677778888888888877654333332 22 799999999999
Q ss_pred ccccc-c---ccccCCCCCCEEECcCCCCCcc-----CcccccccccCCCEEEcCCCcCCC---cchhhHhhcCCCCCEE
Q psy10289 321 LAKVT-T---TAFTNLTNLIELDISYNKLDRL-----EVASFDPIENSLRDLKISGNNIQL---SDVKNVLDKLVKLKAL 388 (497)
Q Consensus 321 l~~~~-~---~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~~L~~L~ls~n~i~~---~~~~~~~~~~~~L~~L 388 (497)
++... + ..+..+++|++|++++|++... .+..+..++. |+.|++++|.++. ..++..+..+++|+.|
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~-L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE-LKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT-CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC-ccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 87322 2 3567889999999999998842 2335666666 9999999999852 3567788899999999
Q ss_pred ecCCCcCCcC-----Ccccc-cCCCcCcEEeCcCCCCcc-----cchhhhccCCCCCEEECCCCcccccc
Q psy10289 389 SIADMNYTDI-----PKGLF-KMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKFKGFD 447 (497)
Q Consensus 389 ~l~~n~i~~l-----~~~~~-~~~~~L~~L~Ls~n~l~~-----~~~~~~~~~~~L~~L~l~~n~l~~~~ 447 (497)
++++|.++.. +..+- ..+++|+.|+|++|++++ ++...+.++++|++|++++|++++..
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 9999998854 33221 337999999999999998 44444477899999999999998755
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.4e-22 Score=190.63 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=70.9
Q ss_pred CCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCC-ChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEc
Q psy10289 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244 (497)
Q Consensus 166 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l 244 (497)
+++.+++++|.+...++.. ..+++|++|++++|.++.. .+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 71 ~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred cceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 3444444444433333322 2344444444444443322 2333444444444444444444333333444444444444
Q ss_pred CCC-CCccc-CcccccCCCCccEEEccCC-CCCcc-ChhhhcCCc-cCceeeccCCc--CC-CcCccccCCCCCccEEEc
Q psy10289 245 RSC-GLENI-NPMMYSILADLIYLDLGYN-QLKYL-LADELEDLK-KLETLLLDGNH--FP-VILEKSFSSQFKLQVLCL 316 (497)
Q Consensus 245 ~~~-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~~~~~~L~~L~l 316 (497)
++| .++.. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++++|. ++ +..+..+..+++|++|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 444 23211 1122233444444444444 44422 233344444 55555555442 22 111222333444444444
Q ss_pred cCCc-ccccccccccCCCCCCEEECcCC
Q psy10289 317 KRNR-LAKVTTTAFTNLTNLIELDISYN 343 (497)
Q Consensus 317 ~~n~-l~~~~~~~~~~~~~L~~L~l~~n 343 (497)
++|. ++......+..+++|++|++++|
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 4444 33222233444445555555544
No 99
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=1e-20 Score=170.23 Aligned_cols=164 Identities=27% Similarity=0.410 Sum_probs=137.9
Q ss_pred CCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCcc
Q psy10289 53 SVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAI 132 (497)
Q Consensus 53 ~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 132 (497)
...||..|.|... .+.|...++..+|. .+ .+++++|++++|.++.+
T Consensus 2 ~~~CP~~C~C~~~-----~v~c~~~~l~~iP~---------------------------~l--~~~l~~L~l~~n~i~~i 47 (220)
T 2v9t_B 2 SLHCPAACTCSNN-----IVDCRGKGLTEIPT---------------------------NL--PETITEIRLEQNTIKVI 47 (220)
T ss_dssp CCCSCTTSEEETT-----EEECTTSCCSSCCS---------------------------SC--CTTCCEEECCSSCCCEE
T ss_pred CCCCCCCCEECCC-----EEEcCCCCcCcCCC---------------------------cc--CcCCCEEECCCCcCCCc
Confidence 3579999999743 68888777765541 11 15788999999999999
Q ss_pred CCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCC
Q psy10289 133 GFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKL 212 (497)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 212 (497)
++..|.++++|++|++++|+++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++++|+++.+.+..|..+
T Consensus 48 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 127 (220)
T 2v9t_B 48 PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL 127 (220)
T ss_dssp CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC
Confidence 88889999999999999999999888889999999999999999999998888889999999999999998888888888
Q ss_pred CCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 213 SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 213 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++|++|++++|.++.+++..|..+++|+.|++++|.+.
T Consensus 128 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 128 HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88999999988888888777877777887777777654
No 100
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.9e-22 Score=193.49 Aligned_cols=287 Identities=17% Similarity=0.197 Sum_probs=155.5
Q ss_pred CCCCcEEEccCCCCCccCCCCCCC-CCCCCEEeccCCcCc--cCCccccCCCCCCcEEeccCCCCccCCcccccC-----
Q psy10289 116 FQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNIT--SLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH----- 187 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~~~~~~~~~~-l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~----- 187 (497)
++++++|.++++ +.......+.. +++|+.|||++|++. ...... ++.++.+.+..+ .+|+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~---~I~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN---FVPAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT---EECTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccc---ccCHHHhccccccc
Confidence 445666666653 21111112222 567777777777766 222211 222334444443 456666666
Q ss_pred ---CcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCC----CCcccCcccccCC
Q psy10289 188 ---LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSC----GLENINPMMYSIL 260 (497)
Q Consensus 188 ---l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~----~l~~~~~~~~~~l 260 (497)
+++|+.|++.+ .++.+.+.+|.+|++|+.++++.|.+..+++.+|.++.++..+..... ....+...+|.++
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77777777776 666666667777777777777777766776666666655555554432 1223334444444
Q ss_pred CCcc-EEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccc-cCCCCCCEE
Q psy10289 261 ADLI-YLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAF-TNLTNLIEL 338 (497)
Q Consensus 261 ~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L 338 (497)
..|+ .+.+.... ......+.. -....+++.+.+.++- .......+ ..|++|+.+
T Consensus 176 ~~L~~~i~~~~~~--~l~~~~~~~---------------------~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 176 EPLETTIQVGAMG--KLEDEIMKA---------------------GLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp CCCEEEEEECTTC--CHHHHHHHT---------------------TCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEE
T ss_pred cccceeEEecCCC--cHHHHHhhc---------------------ccCccccceEEEeeee-cHHHHHHHHHhcCCCeEE
Confidence 5554 33332211 010111110 0012233333333221 11111111 124555555
Q ss_pred ECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCC-EEecCCCcCCcCCcccccCCCcCcEEeCcCC
Q psy10289 339 DISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLK-ALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417 (497)
Q Consensus 339 ~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~-~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n 417 (497)
++++|+++.++..+|..+.. |+.+++++| ++.. -..+|..+++|+ .+++.+ .++.|+..+|.+|++|+.+++++|
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~-L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n 307 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKY-LLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD 307 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTT-CCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS
T ss_pred ECCCCCcceecHhhhhCCCC-CCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC
Confidence 55555555555555555554 555555554 2211 124455666666 677766 667888888888889999998888
Q ss_pred CCcccchhhhccCCCCCEEEC
Q psy10289 418 NLQDIHNLLYQSNIKLTHLDL 438 (497)
Q Consensus 418 ~l~~~~~~~~~~~~~L~~L~l 438 (497)
+++.+++.+|.+|++|+.|+.
T Consensus 308 ~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 308 KITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CCCEECTTTTCTTCCCCEEEC
T ss_pred ccCccchhhhcCCcchhhhcc
Confidence 888888888888888888864
No 101
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.85 E-value=2.2e-20 Score=183.72 Aligned_cols=316 Identities=16% Similarity=0.252 Sum_probs=237.4
Q ss_pred ccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcC
Q psy10289 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190 (497)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 190 (497)
.+|.++.+|+++.+.. .++.|+..+|.+|++|+.+++.++ ++.+...+|.++.+|+.+.+..+ +..+...+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 3789999999999974 588899999999999999999754 78888889999999998877754 77777788887765
Q ss_pred CcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccC
Q psy10289 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270 (497)
Q Consensus 191 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 270 (497)
++..... ....+...+|.++++|+.+.+.++ +..+...+|.++.+|+.+.+..+ ++.+...+|.++..|+.+.+..
T Consensus 142 ~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~ 217 (394)
T 4fs7_A 142 KEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPN 217 (394)
T ss_dssp SEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred cccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCC
Confidence 4443332 344555678889999999998765 56788888988999999888765 7778888888888888888766
Q ss_pred CCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCc
Q psy10289 271 NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350 (497)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 350 (497)
+... +. ........|+.+.+... +..+....|..+..++.+.+..+ ...+....|..+..++.+...... ++.
T Consensus 218 ~~~~-i~-~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~~ 290 (394)
T 4fs7_A 218 SLYY-LG-DFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VPE 290 (394)
T ss_dssp TCCE-EC-TTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---ECT
T ss_pred CceE-ee-hhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ecc
Confidence 5432 22 23344567888888653 45556667888888888888765 445666778888888888776543 445
Q ss_pred ccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccC
Q psy10289 351 ASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430 (497)
Q Consensus 351 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 430 (497)
.+|..+.. |+.+.+..+ ++..+ ..+|..|.+|+.+++.++ ++.|+..+|.+|++|+.+++..+ ++.+...+|.+|
T Consensus 291 ~~F~~~~~-L~~i~l~~~-i~~I~-~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGCSS-LTEVKLLDS-VKFIG-EEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp TTTTTCTT-CCEEEECTT-CCEEC-TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred cccccccc-ccccccccc-cceec-hhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 56777766 888888765 22111 356778888998888754 77888888888899999998876 888888889999
Q ss_pred CCCCEEECCCCccccc
Q psy10289 431 IKLTHLDLSRNKFKGF 446 (497)
Q Consensus 431 ~~L~~L~l~~n~l~~~ 446 (497)
++|+.+++..+ ++.+
T Consensus 366 ~~L~~i~lp~~-~~~~ 380 (394)
T 4fs7_A 366 INLKKVELPKR-LEQY 380 (394)
T ss_dssp TTCCEEEEEGG-GGGG
T ss_pred CCCCEEEECCC-CEEh
Confidence 99999888653 4433
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=5.8e-21 Score=185.49 Aligned_cols=191 Identities=23% Similarity=0.296 Sum_probs=139.3
Q ss_pred cccCCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCC
Q psy10289 50 SSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFI 129 (497)
Q Consensus 50 ~~~~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 129 (497)
......||..|.|... .+.|...++..+|. .++ +.++.|++++|.+
T Consensus 6 ~~~~~~Cp~~C~C~~~-----~l~c~~~~l~~iP~--~~~---------------------------~~l~~L~Ls~N~l 51 (361)
T 2xot_A 6 GRSVVSCPANCLCASN-----ILSCSKQQLPNVPQ--SLP---------------------------SYTALLDLSHNNL 51 (361)
T ss_dssp -CCCTTCCTTCEEETT-----EEECCSSCCSSCCS--SCC---------------------------TTCSEEECCSSCC
T ss_pred CCcCCCCCCCCEECCC-----EEEeCCCCcCccCc--cCC---------------------------CCCCEEECCCCCC
Confidence 3456789999999743 68888877766551 111 3467788888888
Q ss_pred CccCCCCCC-CCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhh
Q psy10289 130 PAIGFHPFW-GVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRL 208 (497)
Q Consensus 130 ~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~ 208 (497)
+.+....|. ++++|++|++++|+++.+.+.+|.++++|++|++++|.++.+++..|.++++|++|++++|+++.+.+..
T Consensus 52 ~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 52 SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp CEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred CccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH
Confidence 888777776 7888888888888888887777888888888888888888887777788888888888888888777777
Q ss_pred hcCCCCCCEEeccCCCCCccChhhh---cCCccccEEEcCCCCCcccCcccccCCCC--ccEEEccCCCCC
Q psy10289 209 FLKLSKLKSLDLSYNDIVEINPEIF---KDIQELKTFKCRSCGLENINPMMYSILAD--LIYLDLGYNQLK 274 (497)
Q Consensus 209 ~~~l~~L~~L~l~~n~i~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~~~~~~l~~--L~~L~l~~n~l~ 274 (497)
|..+++|++|++++|.++.++...| ..+++|+.|++++|.++.++...+..++. ++.|++++|.+.
T Consensus 132 ~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7788888888888888877777666 44666677777776666666555555554 356666666554
No 103
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=2.6e-22 Score=193.35 Aligned_cols=251 Identities=18% Similarity=0.155 Sum_probs=123.7
Q ss_pred CcEEeccCCCCccCCcccccCC--cCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCcc-ChhhhcCCccccEEE
Q psy10289 167 LQELYLDFNKIESIPSSVFMHL--SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEI-NPEIFKDIQELKTFK 243 (497)
Q Consensus 167 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~-~~~~~~~~~~L~~L~ 243 (497)
++.++++++.+. +..+..+ +.++.|++++|.+.+..+. +..+++|++|++++|.+.+. .+..+..+++|+.|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555443 2233444 6677777777777666443 44567777777777765543 344556666666666
Q ss_pred cCCCCCcccCcccccCCCCccEEEccCC-CCCcc-ChhhhcCCccCceeeccCC-cCCCc-CccccCCCC-CccEEEccC
Q psy10289 244 CRSCGLENINPMMYSILADLIYLDLGYN-QLKYL-LADELEDLKKLETLLLDGN-HFPVI-LEKSFSSQF-KLQVLCLKR 318 (497)
Q Consensus 244 l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~l~~ 318 (497)
+++|.++...+..+..+++|++|++++| .+++. .+..+.++++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666655444444455556666666655 34431 2333445555555555555 44432 122333444 455555554
Q ss_pred Cc--cc-ccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCc-CCCcchhhHhhcCCCCCEEecCCCc
Q psy10289 319 NR--LA-KVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN-IQLSDVKNVLDKLVKLKALSIADMN 394 (497)
Q Consensus 319 n~--l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~-i~~~~~~~~~~~~~~L~~L~l~~n~ 394 (497)
|. ++ ...+..+..+++ |+.|++++|. ++. ..+..+..+++|+.|++++|.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~-------------------------L~~L~l~~~~~l~~-~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPN-------------------------LVHLDLSDSVMLKN-DCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTT-------------------------CSEEECTTCTTCCG-GGGGGGGGCTTCCEEECTTCT
T ss_pred CcccCCHHHHHHHHhhCCC-------------------------CCEEeCCCCCcCCH-HHHHHHhCCCCCCEeeCCCCC
Confidence 42 21 111122333444 5555555554 331 222344445555555555553
Q ss_pred -CCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCccccccCCC
Q psy10289 395 -YTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 395 -i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
++.-....+..+++|+.|++++| ++......+. ..++.|++++|+++++.+..
T Consensus 259 ~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 259 DIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSS
T ss_pred CCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCc
Confidence 11111112445566666666666 3332212221 22444456666666654443
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=2.7e-20 Score=166.13 Aligned_cols=180 Identities=24% Similarity=0.327 Sum_probs=144.0
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
+.++.+++.++.++... .++|++|++++|+++.+.+..|.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 56778888888876432 358999999999999888888888999999999999999888888888899999999999
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChh
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLAD 279 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 279 (497)
+++.+.+..|..+++|++|++++|.++++++..|..+++|+.|++++|.++.+++..+..+++|+.|++++|.+.+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~---- 162 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC---- 162 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----
Confidence 9888877778888889999999888888888778888888888888888888777777777888888888876543
Q ss_pred hhcCCccCceeeccCCcCCCcCccccCCCC
Q psy10289 280 ELEDLKKLETLLLDGNHFPVILEKSFSSQF 309 (497)
Q Consensus 280 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 309 (497)
.++.|+.|++..|.+++..|..++.++
T Consensus 163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 163 ---TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp ---CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred ---CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 345677777777777776666555443
No 105
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=1.5e-20 Score=180.37 Aligned_cols=243 Identities=17% Similarity=0.164 Sum_probs=143.4
Q ss_pred CCCCcEEEccCCCCC--------------------ccCCCCCCC--------CCCCCEEeccCCcCccCCccccCCCCCC
Q psy10289 116 FQHLEELHITNSFIP--------------------AIGFHPFWG--------VPSLRYLNLTHNNITSLLDYNFKGMMNL 167 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~--------------------~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L 167 (497)
+++|++|||++|.+. .++..+|.+ |++|+.|++++ .++.+.+.+|.++++|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L 126 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL 126 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence 667777777777776 445555555 66666666665 5666666666666666
Q ss_pred cEEeccCCCCccCCcccccCCcCCcEEeccCC----CCCCCChhhhcCCCCCC-EEeccCCCCCccChhhhcC---Cccc
Q psy10289 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHN----RISKLAPRLFLKLSKLK-SLDLSYNDIVEINPEIFKD---IQEL 239 (497)
Q Consensus 168 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n----~i~~~~~~~~~~l~~L~-~L~l~~n~i~~~~~~~~~~---~~~L 239 (497)
+++++++|.+..+++.+|.++.++..+....+ ....+...+|.++..|+ .+.+... ..++...+.. ..++
T Consensus 127 ~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~--~~l~~~~~~~~~~~~~~ 204 (329)
T 3sb4_A 127 KICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAM--GKLEDEIMKAGLQPRDI 204 (329)
T ss_dssp CEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTT--CCHHHHHHHTTCCGGGC
T ss_pred ceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCC--CcHHHHHhhcccCcccc
Confidence 66666666666666666666555555554432 12223334444455554 3333221 1121111111 2223
Q ss_pred cEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCcc-EEEccC
Q psy10289 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQ-VLCLKR 318 (497)
Q Consensus 240 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~-~L~l~~ 318 (497)
+.+.+.++-...........+++|+.+++++|.++.+...+|.+|++|+++++++| +..+.+.+|.++++|+ .+++.+
T Consensus 205 ~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 205 NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence 33333322110000001112567777777777777777777777777777777776 6667777777777777 777776
Q ss_pred CcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEE
Q psy10289 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLK 364 (497)
Q Consensus 319 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ 364 (497)
.++.+.+.+|.+|++|+.+++++|.++.++..+|..+++ |+.+.
T Consensus 284 -~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~-L~~ly 327 (329)
T 3sb4_A 284 -SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP-SKLIY 327 (329)
T ss_dssp -TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC-CCEEE
T ss_pred -cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc-hhhhc
Confidence 677777777777777777777777777777777777766 77664
No 106
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.84 E-value=1.5e-19 Score=177.75 Aligned_cols=307 Identities=13% Similarity=0.190 Sum_probs=253.4
Q ss_pred CCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChh
Q psy10289 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207 (497)
Q Consensus 128 ~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~ 207 (497)
.++.|+..+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++.++..+|.++.+|+.+.+..+ +..+...
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 48889999999999999999975 599999999999999999999865 88999999999999999888754 6777778
Q ss_pred hhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccC
Q psy10289 208 LFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKL 287 (497)
Q Consensus 208 ~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 287 (497)
+|.++..++.... .....+...+|.++.+|+.+.+.++ +..+...+|.++.+|+.+++..+ ++.+...+|.++..|
T Consensus 135 aF~~~~~~~~~~~--~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L 210 (394)
T 4fs7_A 135 AFKGCDFKEITIP--EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILL 210 (394)
T ss_dssp TTTTCCCSEEECC--TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTC
T ss_pred eeecccccccccC--ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhcccccc
Confidence 8888765443332 2345677888999999999999764 56788899999999999999876 666778899999999
Q ss_pred ceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCC
Q psy10289 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISG 367 (497)
Q Consensus 288 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~ 367 (497)
+.+.+..+.. .+.. .+.....|+.+.+.. .++.+...+|..+..++.+.+..+ ...+....|..+.. ++.+....
T Consensus 211 ~~i~~~~~~~-~i~~-~~~~~~~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~-l~~~~~~~ 285 (394)
T 4fs7_A 211 ENMEFPNSLY-YLGD-FALSKTGVKNIIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSG-LKKVIYGS 285 (394)
T ss_dssp CBCCCCTTCC-EECT-TTTTTCCCCEEEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTT-CCEEEECS
T ss_pred ceeecCCCce-Eeeh-hhcccCCCceEEECC-CceecccccccccccceeEEcCCC-cceeeccccccccc-cceeccCc
Confidence 9999887532 2222 333456899998875 456677788999999999999876 55677788888876 88888876
Q ss_pred CcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcccccc
Q psy10289 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447 (497)
Q Consensus 368 n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 447 (497)
..+. ...+..+.+|+.+.+.++ ++.|+..+|.+|++|+.+++.++ ++.+...+|.+|.+|+.+++..+ ++.|+
T Consensus 286 ~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 286 VIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp SEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred eeec----cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 6544 346778899999999865 78999999999999999999854 99999999999999999999877 99999
Q ss_pred CCCccc
Q psy10289 448 EKSYIM 453 (497)
Q Consensus 448 ~~~~~~ 453 (497)
+..|.-
T Consensus 359 ~~aF~~ 364 (394)
T 4fs7_A 359 ANAFQG 364 (394)
T ss_dssp TTTBTT
T ss_pred HHHhhC
Confidence 888875
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=7.9e-20 Score=164.35 Aligned_cols=163 Identities=26% Similarity=0.455 Sum_probs=114.3
Q ss_pred CCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC
Q psy10289 54 VMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG 133 (497)
Q Consensus 54 ~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 133 (497)
..||..|.|... .++|....+..+|. .+ .+.+++|++++|.++.+.
T Consensus 3 ~~CP~~C~C~~~-----~l~~s~n~l~~iP~--~~---------------------------~~~~~~L~L~~N~l~~~~ 48 (220)
T 2v70_A 3 LACPEKCRCEGT-----TVDCSNQKLNKIPE--HI---------------------------PQYTAELRLNNNEFTVLE 48 (220)
T ss_dssp -CCCTTCEEETT-----EEECCSSCCSSCCS--CC---------------------------CTTCSEEECCSSCCCEEC
T ss_pred CCCCCCCEECCC-----EeEeCCCCcccCcc--CC---------------------------CCCCCEEEcCCCcCCccC
Confidence 579999999743 67777776655441 11 124567777777777774
Q ss_pred -CCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCC
Q psy10289 134 -FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKL 212 (497)
Q Consensus 134 -~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l 212 (497)
...|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|..+++|++|++++|+++.+.+..|..+
T Consensus 49 ~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 128 (220)
T 2v70_A 49 ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128 (220)
T ss_dssp CCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC
T ss_pred chhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC
Confidence 3456777777777777777777777677777777777777777777777777777777777777777777766667777
Q ss_pred CCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 213 SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 213 ~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++|++|++++|.++++.+..|..+++|+.|++++|.+.
T Consensus 129 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 129 SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77777777777777776666666666666666666554
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.7e-19 Score=169.58 Aligned_cols=171 Identities=29% Similarity=0.407 Sum_probs=98.5
Q ss_pred ccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCc
Q psy10289 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLR 192 (497)
Q Consensus 113 ~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~ 192 (497)
+..+++|++|++++|.++.++ .+..+++|++|++++|+++++.+ +..+++|++|++++|.++.++. +..+++|+
T Consensus 42 ~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCC
T ss_pred hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCC
Confidence 445666777777777666653 35566677777777776666644 6666667777776666666543 55666666
Q ss_pred EEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCC
Q psy10289 193 VLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272 (497)
Q Consensus 193 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 272 (497)
+|++++|+++.+ ..+..+++|++|++++|.++++ ..+..+++|+.|++++|.++.+++ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 666666666655 2355666666666666666555 235555555555555555554433 4444555555555554
Q ss_pred CCccChhhhcCCccCceeeccCCcC
Q psy10289 273 LKYLLADELEDLKKLETLLLDGNHF 297 (497)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~l~~n~~ 297 (497)
++++ ..+..+++|+.|++++|.+
T Consensus 190 i~~l--~~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL--RALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC--GGGTTCTTCSEEEEEEEEE
T ss_pred CCCC--hhhccCCCCCEEECcCCcc
Confidence 4433 1244444444444444443
No 109
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=2e-19 Score=169.07 Aligned_cols=189 Identities=24% Similarity=0.304 Sum_probs=115.1
Q ss_pred CcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 119 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
+..+.+..+.++++. .+..+++|+.|++++|.++.+. .+..+++|++|++++|.++.+++ +..+++|++|++++
T Consensus 26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~ 99 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE 99 (291)
T ss_dssp HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence 344455555555542 2345677888888888877763 36677788888888887777765 67777888888888
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccCh
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA 278 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 278 (497)
|.++.+ ..+..+++|++|++++|.+.++ ..+..+++|+.|++++|.++.+ ..+..+++|++|++++|.+.+..+
T Consensus 100 n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 100 NKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp SCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence 777765 2367777777777777777765 2355566666666666666554 234445555555555555554332
Q ss_pred hhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccc
Q psy10289 279 DELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAK 323 (497)
Q Consensus 279 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 323 (497)
+..+++|+.|++++|.++++. .+..+++|+.|++++|.+..
T Consensus 174 --l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred --hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence 445555555555555544431 24444444444444444433
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.81 E-value=2e-19 Score=174.68 Aligned_cols=177 Identities=27% Similarity=0.382 Sum_probs=158.0
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccC-CCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK-GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
+.++++++.++.++.. + .+.++.|++++|+++.+.+..|. ++++|++|++++|.++.+++..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 6799999999998753 2 24689999999999999888887 999999999999999999988899999999999999
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccc---cCCCCccEEEccCCCCCc
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY---SILADLIYLDLGYNQLKY 275 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~l~~L~~L~l~~n~l~~ 275 (497)
|+++.+.+..|..+++|++|++++|.+..+.+..|.++++|+.|++++|.++.++...| ..+++|+.|++++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99999988889999999999999999999999999999999999999999999988877 568999999999999999
Q ss_pred cChhhhcCCcc--CceeeccCCcCCC
Q psy10289 276 LLADELEDLKK--LETLLLDGNHFPV 299 (497)
Q Consensus 276 ~~~~~~~~l~~--L~~L~l~~n~~~~ 299 (497)
+.+..+..++. ++.|++.+|.+..
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred cCHHHhhhccHhhcceEEecCCCccC
Confidence 88888888877 4889999987654
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=2.4e-19 Score=182.41 Aligned_cols=168 Identities=21% Similarity=0.216 Sum_probs=95.0
Q ss_pred cccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEcc
Q psy10289 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLK 317 (497)
Q Consensus 238 ~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (497)
+|+.|++++|.++.++ ..+++|++|++++|.+++++. +.. +|++|++++|.++++.+ .+++|++|+++
T Consensus 81 ~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls 148 (571)
T 3cvr_A 81 QITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINAD 148 (571)
T ss_dssp TCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECC
T ss_pred CCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeCC
Confidence 3444444444444333 123444555555554444222 322 55555555555554322 34556666666
Q ss_pred CCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhc-----CCCCCEEecCC
Q psy10289 318 RNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDK-----LVKLKALSIAD 392 (497)
Q Consensus 318 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~-----~~~L~~L~l~~ 392 (497)
+|.+++++. .+++|++|++++|+++.++. +. .+|+.|++++|.++ .++. +.. .+.|+.|++++
T Consensus 149 ~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~---~~L~~L~Ls~N~L~--~lp~-~~~~L~~~~~~L~~L~Ls~ 216 (571)
T 3cvr_A 149 NNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP---ESLEALDVSTNLLE--SLPA-VPVRNHHSEETEIFFRCRE 216 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC---TTCCEEECCSSCCS--SCCC-CC--------CCEEEECCS
T ss_pred CCccCcCCC----cCCCcCEEECCCCCCCCcch--hh---CCCCEEECcCCCCC--chhh-HHHhhhcccccceEEecCC
Confidence 666655443 34566666666666665544 32 23666666666655 3333 222 12238888888
Q ss_pred CcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccC
Q psy10289 393 MNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430 (497)
Q Consensus 393 n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 430 (497)
|+|+.||..++. +++|+.|+|++|++++..+..+..+
T Consensus 217 N~l~~lp~~l~~-l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 217 NRITHIPENILS-LDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp SCCCCCCGGGGG-SCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred CcceecCHHHhc-CCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 888888887765 7899999999999888777666553
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=7.7e-19 Score=157.89 Aligned_cols=152 Identities=22% Similarity=0.271 Sum_probs=118.4
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
+.++++++.++.++.... ++|+.|++++|+++.+.+..|.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 567888888888764322 57888888888888887778888888888888888888887777888888888888888
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (497)
+++.+.+..|..+++|++|++++|.+..+++..|.++++|+.|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888776667777888888888888888877777777777777777777777777766777777777777777654
No 113
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.80 E-value=7e-18 Score=165.86 Aligned_cols=307 Identities=16% Similarity=0.251 Sum_probs=165.7
Q ss_pred cccCCC-CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCC---cCccCCccccCCCCCCcEEeccCCCCccCCcccccC
Q psy10289 112 IFQQFQ-HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHN---NITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187 (497)
Q Consensus 112 ~~~~~~-~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n---~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 187 (497)
+|.+++ .|+++.+.. .++.|+..+|.+|.+|+.+.+..+ .++.+...+|.++.+|+.+.+..+ ++.++..+|..
T Consensus 58 aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~ 135 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHH 135 (394)
T ss_dssp TTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTT
T ss_pred hccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhh
Confidence 566653 466666653 366666666666666666666544 255566666666666666665543 55666666666
Q ss_pred CcCCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEE
Q psy10289 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLD 267 (497)
Q Consensus 188 l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~ 267 (497)
+.+|+.+.+..+ +..+...+|..+..|+.+.+..+ +..+...+|.+ ..|+.+.+..+ +..+...+|..+..++...
T Consensus 136 c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 136 CEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred hcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceec
Confidence 666666666532 44455556666666666666543 55555555543 34666655532 3344445555555555555
Q ss_pred ccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCc
Q psy10289 268 LGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347 (497)
Q Consensus 268 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 347 (497)
.............+.... ........+.....+..+.+.. .+..+...+|.+|..|+.+.+..+ +..
T Consensus 212 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~-~~~ 278 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSA-----------NGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS-VVS 278 (394)
T ss_dssp ECCSSSCBSSSCEEEECT-----------TSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT-CCE
T ss_pred ccccccccccceeecccc-----------cccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc-cce
Confidence 443332211110000000 0000000111222333444432 344455555666666666666543 344
Q ss_pred cCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhh
Q psy10289 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427 (497)
Q Consensus 348 ~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 427 (497)
+...+|..+.. |+.+.+...--... ...|..|.+|+.+++.++ ++.|+..+|.+|.+|+.+.+..+ ++.+...+|
T Consensus 279 I~~~aF~~c~~-L~~i~l~~~i~~I~--~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 279 IGTGAFMNCPA-LQDIEFSSRITELP--ESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp ECTTTTTTCTT-CCEEECCTTCCEEC--TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred ecCcccccccc-cccccCCCcccccC--ceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 55556666555 66666653221111 244566666666666543 55666666777777777777543 666666777
Q ss_pred ccCCCCCEEECCCCc
Q psy10289 428 QSNIKLTHLDLSRNK 442 (497)
Q Consensus 428 ~~~~~L~~L~l~~n~ 442 (497)
.+|.+|+.+++.++.
T Consensus 354 ~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 354 SNCTALNNIEYSGSR 368 (394)
T ss_dssp TTCTTCCEEEESSCH
T ss_pred hCCCCCCEEEECCce
Confidence 777777777776654
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=1.8e-18 Score=176.09 Aligned_cols=191 Identities=18% Similarity=0.211 Sum_probs=109.0
Q ss_pred CCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEecc
Q psy10289 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197 (497)
Q Consensus 118 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~ 197 (497)
+++.|++++|.++.++...+ ++|++|++++|+++.++ ..+++|++|++++|.++.+|. |.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch--hhc--CCCEEECC
Confidence 77777777777777654332 56777777777777664 345677777777777777665 333 67777777
Q ss_pred CCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccC
Q psy10289 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL 277 (497)
Q Consensus 198 ~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 277 (497)
+|+++++.+ .+++|++|++++|.+++++. .+++|+.|++++|.++.++. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 777766533 45667777777776666544 34556666666666655444 32 55555555555555332
Q ss_pred hhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccc
Q psy10289 278 ADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353 (497)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 353 (497)
. +.. +| +...+.|+.|++++|.++.++.. +..+++|+.|++++|.+++..+..+
T Consensus 197 ~--~~~--~L-----------------~~~~~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 197 A--VPV--RN-----------------HHSEETEIFFRCRENRITHIPEN-ILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp C--CC---------------------------CCEEEECCSSCCCCCCGG-GGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred h--HHH--hh-----------------hcccccceEEecCCCcceecCHH-HhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 2 221 22 00011225555555555555443 3335556666666665555444433
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.6e-18 Score=155.72 Aligned_cols=152 Identities=23% Similarity=0.305 Sum_probs=112.2
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCc-cccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLD-YNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
++++++++.++.++.. + .+.+++|++++|+++.+.+ ..|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~~-~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEH-I--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccC-C--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4788888888877643 2 2356788888888877743 4567778888888888888877777777778888888888
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCC
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~ 274 (497)
|+++.+.+..|..+++|++|++++|.+.++.+..|.++++|+.|++++|.++.+.+..|..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 8877777777777777777777777777777777777777777777777777776666666777777777777655
No 116
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=8.9e-19 Score=180.25 Aligned_cols=176 Identities=28% Similarity=0.381 Sum_probs=138.0
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+..+++|+.|++++|.++.++ .+..+++|+.|+|++|+++++.+ +..+++|+.|+|++|.+..++. +..+++|
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~--l~~l~~L 111 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKL 111 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTT--STTCTTC
T ss_pred chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChh--hccCCCC
Confidence 3556778888888888888774 47778888888888888888755 7788888888888888887763 6788888
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
+.|++++|++..+ ..+..+++|+.|++++|.+.++ ..+..+++|+.|++++|.+..+++ +..+++|+.|++++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 8888888888876 3477788888888888888877 457778888888888888887765 677888888888888
Q ss_pred CCCccChhhhcCCccCceeeccCCcCCCcC
Q psy10289 272 QLKYLLADELEDLKKLETLLLDGNHFPVIL 301 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 301 (497)
.+.++ ..+..+++|+.|++++|.+....
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCCc
Confidence 88765 35777888888888888776643
No 117
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.78 E-value=1.7e-17 Score=163.14 Aligned_cols=318 Identities=13% Similarity=0.230 Sum_probs=235.8
Q ss_pred CCCccCCCCCCCCC-CCCEEeccCCcCccCCccccCCCCCCcEEeccCC---CCccCCcccccCCcCCcEEeccCCCCCC
Q psy10289 128 FIPAIGFHPFWGVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN---KIESIPSSVFMHLSDLRVLSLAHNRISK 203 (497)
Q Consensus 128 ~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n---~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 203 (497)
.++.|+..+|.++. .|+.+.+.. .++.+...+|.++.+|+.+.+..+ .++.++..+|.++.+|+.+.+..+ ++.
T Consensus 50 ~Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~ 127 (394)
T 4gt6_A 50 PVSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE 127 (394)
T ss_dssp EEEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred eeeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence 47889999999885 699999976 489999999999999999999865 488899999999999999888764 677
Q ss_pred CChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcC
Q psy10289 204 LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283 (497)
Q Consensus 204 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 283 (497)
+...+|..+.+|+.+.+..+ +..+...+|.++..|+.+.+..+ ++.+...+|.+ ..|+.+.+..+ +..+...+|.+
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhh
Confidence 77788999999999999754 67788888999999999988754 66777777764 56888887654 33445567777
Q ss_pred CccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEE
Q psy10289 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDL 363 (497)
Q Consensus 284 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L 363 (497)
+..++................+... .........+.....+..+.+.. .+..+...+|..+.. |+.+
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~-L~~i 270 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKS-----------ANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAY-LASV 270 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEEC-----------TTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSS-CCEE
T ss_pred ccccceecccccccccccceeeccc-----------ccccccccccccccccceEEcCC-cceEcccceeeeccc-ccEE
Confidence 7777777666543332211111111 00111111133345566666653 466777888988887 9999
Q ss_pred EcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcc
Q psy10289 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443 (497)
Q Consensus 364 ~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 443 (497)
.+..+....+ ...+..+++|+.+.+. +.++.|+..+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.. .+
T Consensus 271 ~lp~~~~~I~--~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~-sv 345 (394)
T 4gt6_A 271 KMPDSVVSIG--TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS-SV 345 (394)
T ss_dssp ECCTTCCEEC--TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT-TC
T ss_pred ecccccceec--CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc-cc
Confidence 9987654422 3567889999999996 4678999999999999999999865 9999999999999999999965 48
Q ss_pred ccccCCCcccCCchhHHHHhhhhhHh
Q psy10289 444 KGFDEKSYIMSEPKNIHKAAKNSFAL 469 (497)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~n~~~~ 469 (497)
+.|++..|.-....+-+.+.++....
T Consensus 346 ~~I~~~aF~~C~~L~~i~~~~~~~~~ 371 (394)
T 4gt6_A 346 TKIPESAFSNCTALNNIEYSGSRSQW 371 (394)
T ss_dssp CBCCGGGGTTCTTCCEEEESSCHHHH
T ss_pred CEEhHhHhhCCCCCCEEEECCceeeh
Confidence 99988887753332233555554443
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=7.2e-18 Score=152.56 Aligned_cols=133 Identities=24% Similarity=0.307 Sum_probs=83.9
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
++|++|++++|.++.+.+..|.++++|++|++++|+++.+++..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
++|+++.+ |..+..+++|++|++++|.+..+++..|..+++|+.|++.+|.+.
T Consensus 120 s~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCCSC-CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccccc-CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 66666655 444555666666666666666655555555555555555555443
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=5.6e-18 Score=153.29 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=130.7
Q ss_pred CcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 119 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
-+.++.+++.++.++... .++|++|++++|+++++.+..|.++++|++|++++|.+..+++..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 467888888888887543 27899999999999999888899999999999999999999988889999999999999
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCc
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (497)
|+++.+.+..|..+++|++|++++|.+..++. .+..+++|+.|++++|.++.+++..+..+++|+.|++++|.+..
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CcCCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 99998877778889999999999999987754 46778888888888888888877777778888888888887664
No 120
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.3e-18 Score=178.93 Aligned_cols=195 Identities=25% Similarity=0.309 Sum_probs=153.0
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
..+..+.+..+.+.++. .+..+++|+.|++++|.+..++ .+..+++|+.|+|++|.+..+++ +..+++|+.|++
T Consensus 21 ~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 34556667777776654 3457788999999999998874 57889999999999999988876 788999999999
Q ss_pred cCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCcc
Q psy10289 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276 (497)
Q Consensus 197 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 276 (497)
++|.+..+. .+..+++|++|++++|.+..++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+.+.
T Consensus 95 s~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 999988763 5788899999999999888763 377788888888888888876 4567788888888888888776
Q ss_pred ChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccc
Q psy10289 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327 (497)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 327 (497)
.+ +..+++|+.|++++|.+.++ ..+..+++|+.|++++|.+...+..
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~ 215 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPIN 215 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred hh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCccc
Confidence 55 77788888888888877765 3467777888888888877665443
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=1.3e-18 Score=160.95 Aligned_cols=168 Identities=24% Similarity=0.322 Sum_probs=100.7
Q ss_pred CCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEe
Q psy10289 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 195 (497)
+.++..++++++.++++. .+..+++|++|++++|+++.+. .+..+++|++|++++|.++.+++ |..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 455666677777777665 4566777777777777777663 46667777777777777777665 66777777777
Q ss_pred ccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCc
Q psy10289 196 LAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275 (497)
Q Consensus 196 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 275 (497)
+++|+++.+.+ +.. ++|++|++++|.+++++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.+.+
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcc
Confidence 77777766532 222 66666666666666652 2555555555555555555442 24444555555555555544
Q ss_pred cChhhhcCCccCceeeccCCcCC
Q psy10289 276 LLADELEDLKKLETLLLDGNHFP 298 (497)
Q Consensus 276 ~~~~~~~~l~~L~~L~l~~n~~~ 298 (497)
. ..+..+++|+.|++++|.+.
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 33444444444444444443
No 122
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=5.7e-18 Score=149.57 Aligned_cols=153 Identities=20% Similarity=0.235 Sum_probs=109.6
Q ss_pred cCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcE
Q psy10289 114 QQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193 (497)
Q Consensus 114 ~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 193 (497)
..+++|++|++++|.+++++ .+..+++|++|++++|.++.+ ..+..+++|++|++++|.++...+..|+.+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 56678888888888888765 577788888888888877665 35777888888888888887644445777888888
Q ss_pred EeccCCCCCCCChhhhcCCCCCCEEeccCCC-CCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCC
Q psy10289 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYND-IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQ 272 (497)
Q Consensus 194 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 272 (497)
|++++|+++...+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.++.++ .+..+++|++|++++|.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 8888888877666777778888888888886 66663 3666777777777777666554 34555666666666665
Q ss_pred CC
Q psy10289 273 LK 274 (497)
Q Consensus 273 l~ 274 (497)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 53
No 123
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.74 E-value=1.9e-16 Score=154.93 Aligned_cols=318 Identities=14% Similarity=0.172 Sum_probs=205.6
Q ss_pred CccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCc
Q psy10289 110 GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLS 189 (497)
Q Consensus 110 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 189 (497)
.+++....+|+++.+. ..++.|+..+|.+|.+|+.+++.. .++.+...+|.++ +|+.+.+..+ ++.++..+|..+
T Consensus 39 ~~~~~~~~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~- 113 (379)
T 4h09_A 39 IPWYKDRDRISEVRVN-SGITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT- 113 (379)
T ss_dssp STTGGGGGGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-
T ss_pred ccccccccCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-
Confidence 3567778899999996 468999999999999999999975 4888989999987 6888888754 888888888775
Q ss_pred CCcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEcc
Q psy10289 190 DLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLG 269 (497)
Q Consensus 190 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~ 269 (497)
+|+.+.+..+ +..+...+|.++ +++.+.+..+ ++.+...+|..+..++.+.+.............. ..
T Consensus 114 ~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~---------~~ 181 (379)
T 4h09_A 114 DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL---------YN 181 (379)
T ss_dssp CCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE---------EE
T ss_pred CcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee---------cc
Confidence 7999999765 555666677665 5777666543 6667777788888888777665443321111000 00
Q ss_pred CCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccC
Q psy10289 270 YNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349 (497)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~ 349 (497)
. .......+..+..+..+.+... ........+..+..++.+.+..+ +..+...+|.++..|+.+.+..+ ++.+.
T Consensus 182 ~---~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 182 K---NKTILESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp T---TSSEEEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c---ccceeccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 0 0001122333344444444332 22233344555666666666543 44555566666777777776654 56666
Q ss_pred cccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhcc
Q psy10289 350 VASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429 (497)
Q Consensus 350 ~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 429 (497)
..+|..+.. |+.+.+..+--.. -...|..|.+|+.+.+.++.++.|+..+|.+|.+|+.+.+..+ ++.+...+|.+
T Consensus 256 ~~aF~~~~~-l~~i~l~~~i~~i--~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~ 331 (379)
T 4h09_A 256 SFLLQNCTA-LKTLNFYAKVKTV--PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKN 331 (379)
T ss_dssp TTTTTTCTT-CCEEEECCCCSEE--CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ccccceeeh-hccccccccceec--cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhC
Confidence 666666655 6666665432111 1245666777777777777777777777777777777777643 77777777777
Q ss_pred CCCCCEEECCCCccccccCCCcccCC
Q psy10289 430 NIKLTHLDLSRNKFKGFDEKSYIMSE 455 (497)
Q Consensus 430 ~~~L~~L~l~~n~l~~~~~~~~~~~~ 455 (497)
|.+|+.+.+..+ ++.|.+..|.-..
T Consensus 332 C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 332 CKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCCCEEEECCc-cCEEchhHhhCCC
Confidence 777777777543 6677666665443
No 124
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=8.8e-18 Score=148.35 Aligned_cols=153 Identities=18% Similarity=0.225 Sum_probs=110.3
Q ss_pred CCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCCCE
Q psy10289 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKS 217 (497)
Q Consensus 138 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~ 217 (497)
..+++|++|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|+++...+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 45678888888888888764 4777888888888888776664 3677888888888888887755667778888888
Q ss_pred EeccCCCCCccChhhhcCCccccEEEcCCCC-CcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCc
Q psy10289 218 LDLSYNDIVEINPEIFKDIQELKTFKCRSCG-LENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNH 296 (497)
Q Consensus 218 L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (497)
|++++|.+++..+..+..+++|+.|++++|. ++.++ .+..+++|++|++++|.+.+.. .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcc
Confidence 8888888877666777777778877777776 66553 3556667777777777666543 45666666666666665
Q ss_pred CC
Q psy10289 297 FP 298 (497)
Q Consensus 297 ~~ 298 (497)
+.
T Consensus 193 i~ 194 (197)
T 4ezg_A 193 IG 194 (197)
T ss_dssp --
T ss_pred cC
Confidence 53
No 125
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.5e-17 Score=153.65 Aligned_cols=153 Identities=19% Similarity=0.257 Sum_probs=137.1
Q ss_pred cccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 112 ~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
.+..+++|++|++++|.++.++ .+..+++|++|++++|+++++.+ +.++++|++|++++|.++.++.. .. ++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~--~~-~~L 108 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI--PS-ACL 108 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTC--CC-SSC
T ss_pred chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCcc--cc-Ccc
Confidence 5778899999999999999886 68889999999999999999866 89999999999999999998863 33 899
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|++++|+++.+ ..+..+++|++|++++|++++++ .+..+++|+.|++++|.++.+ ..+..+++|+.|++++|
T Consensus 109 ~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 109 SRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG--GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEE
T ss_pred cEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh--HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCC
Confidence 9999999999987 35889999999999999999984 588899999999999999988 56788999999999999
Q ss_pred CCCccC
Q psy10289 272 QLKYLL 277 (497)
Q Consensus 272 ~l~~~~ 277 (497)
.+...+
T Consensus 183 ~~~~~~ 188 (263)
T 1xeu_A 183 KCVNEP 188 (263)
T ss_dssp EEECCC
T ss_pred cccCCc
Confidence 887654
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.70 E-value=1.8e-16 Score=139.20 Aligned_cols=139 Identities=31% Similarity=0.460 Sum_probs=109.9
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCC
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGF 134 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~ 134 (497)
+||..|.|... .++|...++..+|. .+. +++++|++++|.++.+.+
T Consensus 1 ~CP~~C~C~~~-----~l~~s~~~l~~ip~---------------------------~~~--~~l~~L~l~~n~i~~~~~ 46 (192)
T 1w8a_A 1 DCPAMCHCEGT-----TVDCTGRGLKEIPR---------------------------DIP--LHTTELLLNDNELGRISS 46 (192)
T ss_dssp CCCTTSEEETT-----EEECTTSCCSSCCS---------------------------CCC--TTCSEEECCSCCCCSBCC
T ss_pred CcCCCCEECCC-----EEEcCCCCcCcCcc---------------------------CCC--CCCCEEECCCCcCCccCC
Confidence 59999999742 57777766655441 111 277888888888888876
Q ss_pred C-CCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCC
Q psy10289 135 H-PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLS 213 (497)
Q Consensus 135 ~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 213 (497)
. .|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|.++++|++|++++|+++++.+..|..++
T Consensus 47 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (192)
T 1w8a_A 47 DGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126 (192)
T ss_dssp SCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCT
T ss_pred ccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCC
Confidence 4 478888888888888888888888888888888888888888888887788888888888888888887777788888
Q ss_pred CCCEEeccCCCCCc
Q psy10289 214 KLKSLDLSYNDIVE 227 (497)
Q Consensus 214 ~L~~L~l~~n~i~~ 227 (497)
+|++|++++|.+..
T Consensus 127 ~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 127 SLTSLNLASNPFNC 140 (192)
T ss_dssp TCCEEECTTCCBCC
T ss_pred CCCEEEeCCCCccC
Confidence 88888888887664
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.70 E-value=3.1e-16 Score=135.81 Aligned_cols=139 Identities=27% Similarity=0.423 Sum_probs=106.7
Q ss_pred CCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccCCC
Q psy10289 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFH 135 (497)
Q Consensus 56 ~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~ 135 (497)
||..|.|... .+.|...++..++. .-.++|++|++++|.++.+++.
T Consensus 1 Cp~~C~C~~~-----~l~~~~~~l~~~p~-----------------------------~~~~~l~~L~l~~n~l~~~~~~ 46 (177)
T 2o6r_A 1 CPSRCSCSGT-----EIRCNSKGLTSVPT-----------------------------GIPSSATRLELESNKLQSLPHG 46 (177)
T ss_dssp CCTTCEEETT-----EEECCSSCCSSCCT-----------------------------TCCTTCSEEECCSSCCCCCCTT
T ss_pred CcCCCEeCCC-----EEEecCCCCccCCC-----------------------------CCCCCCcEEEeCCCcccEeCHH
Confidence 8888999643 56776665544331 1125778888888888888777
Q ss_pred CCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCC
Q psy10289 136 PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL 215 (497)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 215 (497)
.|.++++|++|++++|+++.+.+..|.++++|++|++++|.++.+++..|..+++|++|++++|.++.+.+..|..+++|
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 126 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126 (177)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred HhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCccc
Confidence 78888888888888888888877777888888888888888888887777788888888888888887766667778888
Q ss_pred CEEeccCCCCCcc
Q psy10289 216 KSLDLSYNDIVEI 228 (497)
Q Consensus 216 ~~L~l~~n~i~~~ 228 (497)
++|++++|.+...
T Consensus 127 ~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 127 QKIWLHTNPWDCS 139 (177)
T ss_dssp CEEECCSSCBCCC
T ss_pred CEEEecCCCeecc
Confidence 8888888876654
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.69 E-value=4.5e-16 Score=136.62 Aligned_cols=138 Identities=26% Similarity=0.436 Sum_probs=106.3
Q ss_pred CCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCccC
Q psy10289 54 VMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIG 133 (497)
Q Consensus 54 ~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~ 133 (497)
..||..|.|... .+.|...++..+|. .++ +++++|++++|.++.++
T Consensus 2 ~~CP~~C~C~~~-----~l~~~~~~l~~ip~--~~~---------------------------~~l~~L~L~~n~i~~ip 47 (193)
T 2wfh_A 2 SRCPTECTCLDT-----VVRCSNKGLKVLPK--GIP---------------------------RDVTELYLDGNQFTLVP 47 (193)
T ss_dssp --CCTTCEEETT-----EEECTTSCCSSCCS--CCC---------------------------TTCCEEECCSSCCCSCC
T ss_pred CCCCCCCEeCCC-----EEEcCCCCCCcCCC--CCC---------------------------CCCCEEECCCCcCchhH
Confidence 469999999642 67888777665541 111 46788888888888776
Q ss_pred CCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCC
Q psy10289 134 FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLS 213 (497)
Q Consensus 134 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~ 213 (497)
..|.++++|++|++++|+++++.+.+|.++++|++|++++|.++.+++..|..+++|++|++++|.++.+.+..|..++
T Consensus 48 -~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 126 (193)
T 2wfh_A 48 -KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126 (193)
T ss_dssp -GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred -HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCc
Confidence 5777888888888888888888777888888888888888888888877788888888888888888887767778888
Q ss_pred CCCEEeccCCCCC
Q psy10289 214 KLKSLDLSYNDIV 226 (497)
Q Consensus 214 ~L~~L~l~~n~i~ 226 (497)
+|++|++++|.+.
T Consensus 127 ~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 127 ALSHLAIGANPLY 139 (193)
T ss_dssp TCCEEECCSSCEE
T ss_pred cccEEEeCCCCee
Confidence 8888888888754
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=3.3e-16 Score=134.43 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=113.6
Q ss_pred CCCccEEEccCCccc--ccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCC
Q psy10289 308 QFKLQVLCLKRNRLA--KVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKL 385 (497)
Q Consensus 308 ~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L 385 (497)
.++|++|++++|.+. .+ +..+..+++|++|++++|.++.+ ..+..++. |+.|++++|.++. .++..+..+++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i-~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~N~l~~-~~~~~~~~l~~L 97 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISV--SNLPKLPK-LKKLELSENRIFG-GLDMLAEKLPNL 97 (168)
T ss_dssp TTSCSEEECCSCBCBTTBC-SSCCGGGGGCCEEEEESSCCCCC--SSCCCCSS-CCEEEEESCCCCS-CCCHHHHHCTTC
T ss_pred cccCCEEECCCCCCChhhH-HHHHHhCCCCCEEeCcCCCCCCh--hhhccCCC-CCEEECcCCcCch-HHHHHHhhCCCC
Confidence 367888888888887 44 34467788888888888888876 56667766 8999999998873 266777789999
Q ss_pred CEEecCCCcCCcCCc-ccccCCCcCcEEeCcCCCCcccch---hhhccCCCCCEEECCCCccccccCCC
Q psy10289 386 KALSIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDIHN---LLYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 386 ~~L~l~~n~i~~l~~-~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
+.|++++|.++.++. ..+..+++|+.|++++|+++++++ ..+..+++|++|++++|.++.+|+..
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 166 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDSD 166 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccccc
Confidence 999999999998864 557889999999999999999887 67889999999999999999988753
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=4.6e-16 Score=133.50 Aligned_cols=135 Identities=23% Similarity=0.247 Sum_probs=88.6
Q ss_pred CCCCcEEEccCCCCC--ccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcE
Q psy10289 116 FQHLEELHITNSFIP--AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 193 (497)
.++|++|++++|.++ .++ ..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+....+..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIE-GLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCS-SCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHH-HHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 443 3456677777777777777766 55667777777777777777644445555677777
Q ss_pred EeccCCCCCCCCh-hhhcCCCCCCEEeccCCCCCccCh---hhhcCCccccEEEcCCCCCcccC
Q psy10289 194 LSLAHNRISKLAP-RLFLKLSKLKSLDLSYNDIVEINP---EIFKDIQELKTFKCRSCGLENIN 253 (497)
Q Consensus 194 L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~~~~l~~~~ 253 (497)
|++++|.++.+.. ..+..+++|++|++++|.++++++ ..+..+++|+.|++++|.+..++
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777777766532 556666777777777776666655 45666666666666666655543
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=8.3e-17 Score=169.77 Aligned_cols=218 Identities=19% Similarity=0.160 Sum_probs=116.0
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCC-----EEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLR-----YLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~-----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
++++.|++.++.+..++...+ ....|+ .++++.|++. +.+..+..++.|+.|+|++|.+..++...| .+++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSC
T ss_pred CccceEEeeCCCCCcchhhHh-hcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCC
Confidence 567778887777776543322 112222 2333334443 446778889999999999999999988765 78999
Q ss_pred cEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCC
Q psy10289 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271 (497)
Q Consensus 192 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n 271 (497)
++|+|++|.++.+ |..|..+++|++|+|++|.++.+ |..|.++++|+.|++++|.++.++.. |..+++|++|++++|
T Consensus 250 ~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~L~~N~l~~lp~~-~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 250 TRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSL-PAELGSCFQLKYFYFFDNMVTTLPWE-FGNLCNLQFLGVEGN 326 (727)
T ss_dssp SCCBCTTSCCSCC-CGGGGGGTTCCEEECTTSCCSSC-CSSGGGGTTCSEEECCSSCCCCCCSS-TTSCTTCCCEECTTS
T ss_pred CEEEeeCCcCccc-ChhhhCCCCCCEEeCcCCcCCcc-ChhhcCCCCCCEEECCCCCCCccChh-hhcCCCccEEeCCCC
Confidence 9999999999866 67788999999999999999977 45588899999999999999887655 888999999999999
Q ss_pred CCCccChhhhcCCcc-CceeeccCCcCCCcCccccCCCCCccEEEccCC--------cccccccccccCCCCCCEEECcC
Q psy10289 272 QLKYLLADELEDLKK-LETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN--------RLAKVTTTAFTNLTNLIELDISY 342 (497)
Q Consensus 272 ~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~~~~L~~L~l~~ 342 (497)
.+.+..+..+..+.. ...+++++|.+.+..|. .|+.|++++| .+....+..+..+..+....+++
T Consensus 327 ~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~ 400 (727)
T 4b8c_D 327 PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSY 400 (727)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----------------------------------------
T ss_pred ccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeec
Confidence 999888877755432 23477888888776553 4566677666 23333333345556666677777
Q ss_pred CCCC
Q psy10289 343 NKLD 346 (497)
Q Consensus 343 n~l~ 346 (497)
|.+.
T Consensus 401 Nil~ 404 (727)
T 4b8c_D 401 NTLC 404 (727)
T ss_dssp -CCC
T ss_pred cccc
Confidence 7654
No 132
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.65 E-value=1.7e-14 Score=140.89 Aligned_cols=296 Identities=14% Similarity=0.193 Sum_probs=196.0
Q ss_pred ccccCCCCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcC
Q psy10289 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190 (497)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 190 (497)
.+|.+|.+|+++++.. .++.|+..+|.++ +|+.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +
T Consensus 63 ~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~ 136 (379)
T 4h09_A 63 ANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-S 136 (379)
T ss_dssp TTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-C
T ss_pred HHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-CcccccCCCc-cccccccccccc-e
Confidence 4899999999999974 5899999999998 788888865 5888888899875 7999999875 677888888776 6
Q ss_pred CcEEeccCCCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccC
Q psy10289 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270 (497)
Q Consensus 191 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~ 270 (497)
++.+.+..+ ++.+...+|..+.+++.+.+............+. .... ......+.....+..+.+..
T Consensus 137 l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~-----------~~~~~~~~~~~~~~~~~~~~ 203 (379)
T 4h09_A 137 VKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNKN-----------KTILESYPAAKTGTEFTIPS 203 (379)
T ss_dssp CCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EETT-----------SSEEEECCTTCCCSEEECCT
T ss_pred eeeeeccce-eeccccchhcccccccccccccccceeeccccee-cccc-----------cceecccccccccccccccc
Confidence 777777653 6667678888999999998876543322111110 0000 00011222334444444433
Q ss_pred CCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCc
Q psy10289 271 NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350 (497)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 350 (497)
. .......++..+.+++.+.+..+ +..+....|..+..|+.+.+..+ ++.+...+|.++.+|+.+.+.. .+..++.
T Consensus 204 ~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~ 279 (379)
T 4h09_A 204 T-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPY 279 (379)
T ss_dssp T-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECT
T ss_pred c-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccc
Confidence 2 22233445566666666666543 44455556666667777776654 5566666677777777777654 3666666
Q ss_pred ccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccC
Q psy10289 351 ASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430 (497)
Q Consensus 351 ~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 430 (497)
.+|..+.+ |+.+.+.++.++..+ ...|..|.+|+.+.+.++ ++.|+..+|.+|++|+.+.+..+ ++.+...+|.+|
T Consensus 280 ~aF~~c~~-L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 280 LLCSGCSN-LTKVVMDNSAIETLE-PRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTTTCTT-CCEEEECCTTCCEEC-TTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred cccccccc-cccccccccccceeh-hhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 66766665 777777666554111 345667777777777653 66788888888888888888754 777888888777
Q ss_pred CCC
Q psy10289 431 IKL 433 (497)
Q Consensus 431 ~~L 433 (497)
+.+
T Consensus 356 ~~~ 358 (379)
T 4h09_A 356 SIT 358 (379)
T ss_dssp SCC
T ss_pred CCC
Confidence 544
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=3.1e-15 Score=129.52 Aligned_cols=129 Identities=26% Similarity=0.369 Sum_probs=84.0
Q ss_pred CcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 119 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
.+.+++++++++.++... .++|++|++++|+++++.+..|..+++|++|++++|.++.+++..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356777777777665332 24677777777777776666667777777777777777777666666667777777777
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCc
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~ 250 (497)
|+++.+.+..|..+++|++|++++|.++.+++..+..+++|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 7766665555666666666666666666665555555555555555555444
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.4e-15 Score=133.47 Aligned_cols=126 Identities=24% Similarity=0.305 Sum_probs=63.3
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCcc-ccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDY-NFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
++++++++.+++++...+ ++|++|++++|+++.+.+. .|..+++|++|++++|.++.+++..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 455666666655543221 1555666666655555442 245555555555555555555444455555555555555
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCC
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCG 248 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~ 248 (497)
|+++++.+..|.++++|++|++++|.++++.+..|..+++|+.|++++|.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCC
Confidence 55555444444445555555555555444444444444444444444433
No 135
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=132.37 Aligned_cols=126 Identities=23% Similarity=0.283 Sum_probs=78.7
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
+.++++++.++.++...+ ++|++|++++|+++.++ ..|.++++|++|++++|.++.+++..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~~---~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP---RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCCC---TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCCC---CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 456666666666654322 36667777777666554 45666666666666666666666666666666666666666
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCC
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGL 249 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l 249 (497)
+++.+.+..|..+++|++|++++|.++.+++..|..+++|+.|++++|.+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 66666555666666666666666666666555555555555555555544
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=5.6e-18 Score=173.30 Aligned_cols=110 Identities=22% Similarity=0.199 Sum_probs=97.0
Q ss_pred CCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCcccccCCCcCcEEe
Q psy10289 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLN 413 (497)
Q Consensus 334 ~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~~~~~~~~~L~~L~ 413 (497)
.|+.|++++|.+++++. +..++. |+.|++++|.++ .+|..+..+++|+.|++++|+++.+| .+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~~lp~--~~~l~~-L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH--LEQLLL-VTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCSSCCC--GGGGTT-CCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEE
T ss_pred CceEEEecCCCCCCCcC--cccccc-CcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc--ccCCCCCCcEEE
Confidence 58899999999998753 777776 999999999988 66788999999999999999999988 478899999999
Q ss_pred CcCCCCcccc-hhhhccCCCCCEEECCCCccccccCCC
Q psy10289 414 LSGNNLQDIH-NLLYQSNIKLTHLDLSRNKFKGFDEKS 450 (497)
Q Consensus 414 Ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~ 450 (497)
|++|+++++. +..+..+++|+.|++++|+++++|+..
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 9999999987 778899999999999999999988754
No 137
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=3.1e-18 Score=175.18 Aligned_cols=190 Identities=21% Similarity=0.204 Sum_probs=99.8
Q ss_pred CCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCC-------------CccCCcccccCCcCCcEEe-ccCCCCCC
Q psy10289 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK-------------IESIPSSVFMHLSDLRVLS-LAHNRISK 203 (497)
Q Consensus 138 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------~~~~~~~~~~~l~~L~~L~-l~~n~i~~ 203 (497)
..+++|+.|++++|+++.+ |..++.+++|+.|++++|. ....++..++.+++|+.|+ ++.|.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~L-p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVL-QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHHhh-HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 4456677777777766655 4556666667776665542 2222233344444455444 33332211
Q ss_pred CChhhhcCCCCCCEEeccCCCCCccChhhhcCCccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcC
Q psy10289 204 LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283 (497)
Q Consensus 204 ~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 283 (497)
+ +.+.+++|.+..+++ ..|+.|++++|.+++++. +..+++|+.|++++|.++. .|..+++
T Consensus 425 L-----------~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~-lp~~~~~ 484 (567)
T 1dce_A 425 L-----------RSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRA-LPPALAA 484 (567)
T ss_dssp H-----------HHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCC-CCGGGGG
T ss_pred h-----------hhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccc-cchhhhc
Confidence 1 011111111111111 135556666666655543 5555666666666666653 3445666
Q ss_pred CccCceeeccCCcCCCcCccccCCCCCccEEEccCCcccccc-cccccCCCCCCEEECcCCCCCccCc
Q psy10289 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT-TTAFTNLTNLIELDISYNKLDRLEV 350 (497)
Q Consensus 284 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~ 350 (497)
+++|+.|++++|.++++ | .+..+++|++|++++|.++++. +..+..+++|+.|++++|.+++.++
T Consensus 485 l~~L~~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 485 LRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCEEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 66666666666666653 3 5556666666666666666654 4556666666666666666665543
No 138
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.7e-15 Score=125.87 Aligned_cols=128 Identities=18% Similarity=0.219 Sum_probs=95.7
Q ss_pred CCccEEEccCCccc-ccccccccCCCCCCEEECcCCCCCccCcccccccccCCCEEEcCCCcCCCcchhhHhhcCCCCCE
Q psy10289 309 FKLQVLCLKRNRLA-KVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKA 387 (497)
Q Consensus 309 ~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~ 387 (497)
+++++|++++|.+. +..+..+..+++|++|++++|.++.+ ..+..++. |+.|++++|.++. .++..+..+++|+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~-L~~L~Ls~n~i~~-~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNK-LKKLELSDNRVSG-GLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTT-CCEEECCSSCCCS-CTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCC-CCEEECCCCcccc-hHHHHhhhCCCCCE
Confidence 56777777777776 23334567777788888887777766 55666665 8888888888763 26677777888888
Q ss_pred EecCCCcCCcCCc-ccccCCCcCcEEeCcCCCCcccch---hhhccCCCCCEEECCC
Q psy10289 388 LSIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDIHN---LLYQSNIKLTHLDLSR 440 (497)
Q Consensus 388 L~l~~n~i~~l~~-~~~~~~~~L~~L~Ls~n~l~~~~~---~~~~~~~~L~~L~l~~ 440 (497)
|++++|+++.++. ..+..+++|+.|++++|+++++++ ..+..+++|+.||+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888887652 456788899999999999888876 5788889999998864
No 139
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=2.3e-15 Score=126.38 Aligned_cols=127 Identities=24% Similarity=0.283 Sum_probs=82.1
Q ss_pred CCCCcEEEccCCCCC--ccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcE
Q psy10289 116 FQHLEELHITNSFIP--AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193 (497)
Q Consensus 116 ~~~L~~L~l~~~~i~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~ 193 (497)
.+++++|++++|.++ .++ ..+..+++|++|++++|.++++ ..+..+++|++|++++|.++...+..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLE-GLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCC-SCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHH-HHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356777777777776 443 4566777777777777777766 55666777777777777776644444555667777
Q ss_pred EeccCCCCCCCC-hhhhcCCCCCCEEeccCCCCCccCh---hhhcCCccccEEEcC
Q psy10289 194 LSLAHNRISKLA-PRLFLKLSKLKSLDLSYNDIVEINP---EIFKDIQELKTFKCR 245 (497)
Q Consensus 194 L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~n~i~~~~~---~~~~~~~~L~~L~l~ 245 (497)
|++++|+++++. +..+..+++|++|++++|.++++++ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777766642 2556666667777776666666654 455666666666543
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.60 E-value=1.7e-15 Score=130.95 Aligned_cols=136 Identities=19% Similarity=0.263 Sum_probs=102.8
Q ss_pred ccccCCCCCcEEEccCCCCCccCCCCCCCCC-CCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCc
Q psy10289 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLS 189 (497)
Q Consensus 111 ~~~~~~~~L~~L~l~~~~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 189 (497)
+.+..+++|++|++++|.++.++ .+..+. +|++|++++|.++++ ..+..+++|++|++++|.++.+++..|..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i~--~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSCC--CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchhH--HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCC
Confidence 35677888899999998888773 244444 889999998888877 5678888888888888888888877777888
Q ss_pred CCcEEeccCCCCCCCCh-hhhcCCCCCCEEeccCCCCCccChh---hhcCCccccEEEcCCCCCc
Q psy10289 190 DLRVLSLAHNRISKLAP-RLFLKLSKLKSLDLSYNDIVEINPE---IFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 190 ~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~~~~~---~~~~~~~L~~L~l~~~~l~ 250 (497)
+|++|++++|+++.+.+ ..+..+++|++|++++|.+..++.. .+..+++|+.|++++|...
T Consensus 89 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888888877633 2677788888888888887766543 4666666666666666544
No 141
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=7.5e-16 Score=162.49 Aligned_cols=187 Identities=20% Similarity=0.178 Sum_probs=82.9
Q ss_pred CCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCC---------CChhhhcCCCCCCEEeccCCCCCccChhhhcC
Q psy10289 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK---------LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD 235 (497)
Q Consensus 165 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~ 235 (497)
+.++.|++.+|.+..++... ++.++|+.+.+.. +.+..|..++.|+.|++++|.+..+++..+ .
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~------l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL------LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-K 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-G
T ss_pred CccceEEeeCCCCCcchhhH------hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-C
Confidence 45777788777777655433 2333333333222 224556667777777777777776655544 5
Q ss_pred CccccEEEcCCCCCcccCcccccCCCCccEEEccCCCCCccChhhhcCCccCceeeccCCcCCCcCccccCCCCCccEEE
Q psy10289 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLC 315 (497)
Q Consensus 236 ~~~L~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 315 (497)
+++|+.|++++|.++.++ ..+..+++|++|+|++|.++. .|..|.++++|++|++++|.+..+ |..|..+++|++|+
T Consensus 246 l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLTELP-AEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTL-PWEFGNLCNLQFLG 322 (727)
T ss_dssp CCSCSCCBCTTSCCSCCC-GGGGGGTTCCEEECTTSCCSS-CCSSGGGGTTCSEEECCSSCCCCC-CSSTTSCTTCCCEE
T ss_pred CCCCCEEEeeCCcCcccC-hhhhCCCCCCEEeCcCCcCCc-cChhhcCCCCCCEEECCCCCCCcc-ChhhhcCCCccEEe
Confidence 667777777777776543 345666677777777776663 355566666677777776666543 34466666677777
Q ss_pred ccCCcccccccccccCCC-CCCEEECcCCCCCccCcccccccccCCCEEEcCCC
Q psy10289 316 LKRNRLAKVTTTAFTNLT-NLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368 (497)
Q Consensus 316 l~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~L~~L~ls~n 368 (497)
|++|.+.+..+..+..+. .+..+++++|.++...+. .++.|++++|
T Consensus 323 L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 323 VEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH-------ERRFIEINTD 369 (727)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C---------
T ss_pred CCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc-------ccceeEeecc
Confidence 776666655554443221 112355666665543322 2555555555
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1e-14 Score=126.10 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=89.5
Q ss_pred CCCCCCCCCEEeccCCcCccCCccccCCC-CCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCC
Q psy10289 136 PFWGVPSLRYLNLTHNNITSLLDYNFKGM-MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214 (497)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 214 (497)
.+..+++|+.|++++|+++.+ +. +..+ ++|++|++++|.++.+ ..|..+++|++|++++|.++.+.+..|..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 355677888888888888766 22 3333 3788888888877776 23677778888888888777775555577777
Q ss_pred CCEEeccCCCCCccCh-hhhcCCccccEEEcCCCCCcccCcc---cccCCCCccEEEccCCCC
Q psy10289 215 LKSLDLSYNDIVEINP-EIFKDIQELKTFKCRSCGLENINPM---MYSILADLIYLDLGYNQL 273 (497)
Q Consensus 215 L~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~---~~~~l~~L~~L~l~~n~l 273 (497)
|++|++++|.+..++. ..+..+++|+.|++++|.+..++.. .+..+++|+.|++++|..
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777766654 3566666777777777766655443 344455555555555543
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=5.2e-14 Score=120.67 Aligned_cols=86 Identities=26% Similarity=0.309 Sum_probs=51.4
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEec
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l 196 (497)
+++++|++++|.++.+.+..|.++++|++|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|++|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 45566666666666665555666666666666666666665555555666666666666666555555555555555555
Q ss_pred cCCCCC
Q psy10289 197 AHNRIS 202 (497)
Q Consensus 197 ~~n~i~ 202 (497)
++|.+.
T Consensus 110 ~~N~~~ 115 (170)
T 3g39_A 110 LNNPWD 115 (170)
T ss_dssp CSSCBC
T ss_pred CCCCCC
Confidence 555554
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.54 E-value=7.3e-14 Score=120.18 Aligned_cols=117 Identities=24% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCCCCCceeccCCCCcEEEEecCCCCCCCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCcc
Q psy10289 53 SVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAI 132 (497)
Q Consensus 53 ~~~~p~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 132 (497)
..+||..|.|... .++|....+..+|. .+ .++|++|++++|.++.+
T Consensus 3 ~~~CP~~C~C~~~-----~l~~~~n~l~~iP~---------------------------~~--~~~L~~L~Ls~N~l~~~ 48 (174)
T 2r9u_A 3 SAGCPSQCSCDQT-----LVNCQNIRLASVPA---------------------------GI--PTDKQRLWLNNNQITKL 48 (174)
T ss_dssp CCSSCTTSEECSS-----EEECCSSCCSSCCS---------------------------CC--CTTCSEEECCSSCCCCC
T ss_pred CCCCCCCCEECCc-----EEEeCCCCCCccCC---------------------------Cc--CCCCcEEEeCCCCcccc
Confidence 4579999999532 45665555544331 11 14566666666666666
Q ss_pred CCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCC
Q psy10289 133 GFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203 (497)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~ 203 (497)
.+..|.++++|++|++++|+++++++..|.++++|++|++++|.++.+++..|..+++|++|++++|.+..
T Consensus 49 ~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 49 EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 66666666666666666666666655555666666666666666666665555566666666666665543
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=2.4e-13 Score=116.50 Aligned_cols=106 Identities=25% Similarity=0.280 Sum_probs=92.8
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
++++++++.++.++... .++|++|++++|+++++.+..|.++++|++|++++|.++.+++..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57888899998887543 268999999999999998888999999999999999999999988889999999999999
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCcc
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEI 228 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~ 228 (497)
+++.+.+..|..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 99988777788899999999999987644
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=1.2e-15 Score=134.76 Aligned_cols=156 Identities=21% Similarity=0.244 Sum_probs=115.8
Q ss_pred hcCCccCceeeccCCcCCCcCcc------ccCCCCCccEEEccCCcccccccccccCCCCCCEEECcCCCCCccCccccc
Q psy10289 281 LEDLKKLETLLLDGNHFPVILEK------SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354 (497)
Q Consensus 281 ~~~l~~L~~L~l~~n~~~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 354 (497)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. .+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhh
Confidence 34445555566666555554443 6677788888888888888765 57788888999999888886643 344
Q ss_pred ccccCCCEEEcCCCcCCCcchhhHhhcCCCCCEEecCCCcCCcCCc-ccccCCCcCcEEeCcCCCCcccchh--------
Q psy10289 355 PIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDIHNL-------- 425 (497)
Q Consensus 355 ~~~~~L~~L~ls~n~i~~~~~~~~~~~~~~L~~L~l~~n~i~~l~~-~~~~~~~~L~~L~Ls~n~l~~~~~~-------- 425 (497)
.++. |+.|++++|.++ .++ .+..+++|+.|++++|+++.++. ..+..+++|+.|++++|++++..+.
T Consensus 91 ~~~~-L~~L~L~~N~l~--~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~ 166 (198)
T 1ds9_A 91 VADT-LEELWISYNQIA--SLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYR 166 (198)
T ss_dssp HHHH-CSEEEEEEEECC--CHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHH
T ss_pred cCCc-CCEEECcCCcCC--cCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHH
Confidence 4455 999999999887 344 57788899999999999888765 4567889999999999988776443
Q ss_pred --hhccCCCCCEEECCCCcccc
Q psy10289 426 --LYQSNIKLTHLDLSRNKFKG 445 (497)
Q Consensus 426 --~~~~~~~L~~L~l~~n~l~~ 445 (497)
.+..+++|+.|| +|+++.
T Consensus 167 ~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 167 IEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHhCCCcEEEC--CcccCH
Confidence 477899999987 666654
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=5.3e-13 Score=114.76 Aligned_cols=107 Identities=27% Similarity=0.311 Sum_probs=89.5
Q ss_pred cEEEccCCCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCC
Q psy10289 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199 (497)
Q Consensus 120 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n 199 (497)
+.++++++.++.++.... ++|++|++++|+++++.+..|.++++|++|++++|.++.+|+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 678888888888865332 68899999999999888888888999999999999998888888888889999999999
Q ss_pred CCCCCChhhhcCCCCCCEEeccCCCCCccC
Q psy10289 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEIN 229 (497)
Q Consensus 200 ~i~~~~~~~~~~l~~L~~L~l~~n~i~~~~ 229 (497)
+++.+.+..|..+++|++|++++|.+....
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 888887667888888888888888876543
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=7e-16 Score=136.21 Aligned_cols=110 Identities=25% Similarity=0.285 Sum_probs=55.4
Q ss_pred CCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccCCCCCCCChhhhcCCCCC
Q psy10289 136 PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL 215 (497)
Q Consensus 136 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L 215 (497)
.|..+++|++|++++|+++.++ .+..+++|++|++++|.++.+|. .+..+++|++|++++|+++++ + .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASL-S-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCH-H-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcC-C-ccccCCCC
Confidence 4445555555655555555542 45555555555555555555543 233445555555555555544 2 34445555
Q ss_pred CEEeccCCCCCccCh-hhhcCCccccEEEcCCCCCc
Q psy10289 216 KSLDLSYNDIVEINP-EIFKDIQELKTFKCRSCGLE 250 (497)
Q Consensus 216 ~~L~l~~n~i~~~~~-~~~~~~~~L~~L~l~~~~l~ 250 (497)
++|++++|.+..++. ..+..+++|+.|++++|.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 555555555544432 23444444444444444443
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=3.4e-12 Score=122.98 Aligned_cols=91 Identities=25% Similarity=0.331 Sum_probs=76.0
Q ss_pred ccCCCCCcEEEccC-CCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCC
Q psy10289 113 FQQFQHLEELHITN-SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDL 191 (497)
Q Consensus 113 ~~~~~~L~~L~l~~-~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 191 (497)
+..+++|++|+|++ |.++.+++..|.++++|++|+|++|+++++.+.+|.++++|++|+|++|.++.+|+..|..++ |
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L 105 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-L 105 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-C
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-c
Confidence 56667888899986 888888888888888899999998888888888888888888888888888888887776665 8
Q ss_pred cEEeccCCCCCCC
Q psy10289 192 RVLSLAHNRISKL 204 (497)
Q Consensus 192 ~~L~l~~n~i~~~ 204 (497)
+.|++.+|.+...
T Consensus 106 ~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 106 QELVLSGNPLHCS 118 (347)
T ss_dssp CEEECCSSCCCCC
T ss_pred eEEEeeCCCccCC
Confidence 8888888887643
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=2.2e-13 Score=131.86 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=60.3
Q ss_pred CccEEEccCCcccccccccc-----cCCCCCCEEECcCCCCCccCcccc----cccccCCCEEEcCCCcCCCcc---hhh
Q psy10289 310 KLQVLCLKRNRLAKVTTTAF-----TNLTNLIELDISYNKLDRLEVASF----DPIENSLRDLKISGNNIQLSD---VKN 377 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~-----~~~~~L~~L~l~~n~l~~~~~~~~----~~~~~~L~~L~ls~n~i~~~~---~~~ 377 (497)
+|++|++++|.++......+ ...++|++|++++|.+++.....+ ...+. |++|++++|.++... +..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-L~~L~Ls~N~l~~~g~~~L~~ 205 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS-VTHLSLLHTGLGDEGLELLAA 205 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSS-CCEEECTTSSCHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCC-cCEEeCCCCCCCcHHHHHHHH
Confidence 45555555555443322222 234556666666665554332222 22333 666666666654221 234
Q ss_pred HhhcCCCCCEEecCCCcCCcCCccc----ccCCCcCcEEeCcCCCCcccchhhhcc
Q psy10289 378 VLDKLVKLKALSIADMNYTDIPKGL----FKMNPHLQFLNLSGNNLQDIHNLLYQS 429 (497)
Q Consensus 378 ~~~~~~~L~~L~l~~n~i~~l~~~~----~~~~~~L~~L~Ls~n~l~~~~~~~~~~ 429 (497)
.+...++|+.|++++|.|+...... +..+++|+.|+|++|.|++.....+..
T Consensus 206 ~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~ 261 (372)
T 3un9_A 206 QLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRD 261 (372)
T ss_dssp HGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHH
T ss_pred HHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHH
Confidence 4455566666666666665432211 233467777777777777655544443
No 151
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=2.6e-13 Score=131.37 Aligned_cols=162 Identities=18% Similarity=0.163 Sum_probs=113.9
Q ss_pred ccCceeeccCCcCCCcCcccc----C-CCCCccEEEccCCccccccccc-ccCCCCCCEEECcCCCCCccCcccccc---
Q psy10289 285 KKLETLLLDGNHFPVILEKSF----S-SQFKLQVLCLKRNRLAKVTTTA-FTNLTNLIELDISYNKLDRLEVASFDP--- 355 (497)
Q Consensus 285 ~~L~~L~l~~n~~~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 355 (497)
+.|+.|++++|.++......+ . ..++|++|++++|.++...... ...+++|++|++++|.+++.....+..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345555665555544322221 1 2357888888888876433322 234568999999999998766555532
Q ss_pred --cccCCCEEEcCCCcCCCc---chhhHhhcCCCCCEEecCCCcCCcCC----cccccCCCcCcEEeCcCCCCcccchh-
Q psy10289 356 --IENSLRDLKISGNNIQLS---DVKNVLDKLVKLKALSIADMNYTDIP----KGLFKMNPHLQFLNLSGNNLQDIHNL- 425 (497)
Q Consensus 356 --~~~~L~~L~ls~n~i~~~---~~~~~~~~~~~L~~L~l~~n~i~~l~----~~~~~~~~~L~~L~Ls~n~l~~~~~~- 425 (497)
.+ +|+.|++++|.++.. .+...+...++|++|++++|.|+... ...+..+++|+.|+|++|.|++....
T Consensus 152 ~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 152 HDQC-QITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp STTC-CCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred hcCC-ccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 33 499999999998742 24455678899999999999987543 22345668999999999999875543
Q ss_pred ---hhccCCCCCEEECCCCcccccc
Q psy10289 426 ---LYQSNIKLTHLDLSRNKFKGFD 447 (497)
Q Consensus 426 ---~~~~~~~L~~L~l~~n~l~~~~ 447 (497)
.+..+++|++|+|++|+|+...
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3456799999999999998643
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=4.5e-11 Score=115.08 Aligned_cols=104 Identities=21% Similarity=0.260 Sum_probs=91.3
Q ss_pred EEEccCC-CCCccCCCCCCCCCCCCEEeccC-CcCccCCccccCCCCCCcEEeccCCCCccCCcccccCCcCCcEEeccC
Q psy10289 121 ELHITNS-FIPAIGFHPFWGVPSLRYLNLTH-NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198 (497)
Q Consensus 121 ~L~l~~~-~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~l~~ 198 (497)
.++++++ .++.++. +..+++|++|+|++ |+++++.+..|.++++|++|+|++|.++.+++..|.++++|+.|+|++
T Consensus 12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4677777 8888875 88889999999996 999999888999999999999999999999988899999999999999
Q ss_pred CCCCCCChhhhcCCCCCCEEeccCCCCCc
Q psy10289 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVE 227 (497)
Q Consensus 199 n~i~~~~~~~~~~l~~L~~L~l~~n~i~~ 227 (497)
|+++.+.+..|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999988777776665 9999999998764
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.75 E-value=8.6e-09 Score=98.82 Aligned_cols=198 Identities=22% Similarity=0.182 Sum_probs=103.3
Q ss_pred cccEEEcCCCCCcc-cC-------cccccCCCCccEEEccCCCCC---------ccChhhhcCCccCceeeccCCcCCCc
Q psy10289 238 ELKTFKCRSCGLEN-IN-------PMMYSILADLIYLDLGYNQLK---------YLLADELEDLKKLETLLLDGNHFPVI 300 (497)
Q Consensus 238 ~L~~L~l~~~~l~~-~~-------~~~~~~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~~~~~ 300 (497)
.++.|.+......+ .. ..+...+++|+.|.+...... +.....+..+++|+.|.++++.-...
T Consensus 108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l 187 (362)
T 2ra8_A 108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187 (362)
T ss_dssp GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence 46677776554331 10 112334678888888654321 11334556677888888877631122
Q ss_pred CccccCCCCCccEEEccCCcccccccccc--cCCCCCCEEECcCC--CC-CccCc----cccc--ccccCCCEEEcCCCc
Q psy10289 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAF--TNLTNLIELDISYN--KL-DRLEV----ASFD--PIENSLRDLKISGNN 369 (497)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~~~~~L~~L~l~~n--~l-~~~~~----~~~~--~~~~~L~~L~ls~n~ 369 (497)
.+ + ..++|++|++..+.+.......+ ..+++|++|+++.+ .. ..... ..+. .++. |+.|++.+|.
T Consensus 188 ~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~-Lr~L~L~~~~ 263 (362)
T 2ra8_A 188 GK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPN-LKWLGIVDAE 263 (362)
T ss_dssp CS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTT-CCEEEEESCT
T ss_pred cc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCC-cCEEeCCCCC
Confidence 11 2 25678888887776643322222 25777888777531 11 11000 0111 2333 7777777776
Q ss_pred CCCcchhhHh--hcCCCCCEEecCCCcCCcC-----CcccccCCCcCcEEeCcCCCCcccchhhhcc-CCCCCEEECCCC
Q psy10289 370 IQLSDVKNVL--DKLVKLKALSIADMNYTDI-----PKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS-NIKLTHLDLSRN 441 (497)
Q Consensus 370 i~~~~~~~~~--~~~~~L~~L~l~~n~i~~l-----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-~~~L~~L~l~~n 441 (497)
++........ ..+++|+.|+++.|.++.. +.++ ..+++|+.|++++|.+++.....+.. + ...++++++
T Consensus 264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L-~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~ 340 (362)
T 2ra8_A 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHV-DKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDS 340 (362)
T ss_dssp THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTH-HHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSB
T ss_pred CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhc-ccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCC
Confidence 6522111111 2456777777777766542 2111 33567777777777666544444433 2 355677666
Q ss_pred c
Q psy10289 442 K 442 (497)
Q Consensus 442 ~ 442 (497)
+
T Consensus 341 ~ 341 (362)
T 2ra8_A 341 Q 341 (362)
T ss_dssp C
T ss_pred c
Confidence 5
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.74 E-value=1.9e-08 Score=96.36 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=26.9
Q ss_pred CCCCCEEECcCCCCCccCccccc---ccccCCCEEEcCCCcCCCcc---hhhHhhcCCCCCEEecCCCcCC
Q psy10289 332 LTNLIELDISYNKLDRLEVASFD---PIENSLRDLKISGNNIQLSD---VKNVLDKLVKLKALSIADMNYT 396 (497)
Q Consensus 332 ~~~L~~L~l~~n~l~~~~~~~~~---~~~~~L~~L~ls~n~i~~~~---~~~~~~~~~~L~~L~l~~n~i~ 396 (497)
+++|++|++.+|.+.+.....+. .++. |+.|+|+.|.++... +...+..+++|+.|++++|.|+
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~-L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQ-LETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGG-CSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCC-CCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 45555555555544432111111 1222 555555555544221 1122233455555555555444
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.52 E-value=4.5e-08 Score=84.64 Aligned_cols=115 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred ccCCCCCCEEECcCC-CCCccCcccc----cccccCCCEEEcCCCcCCCcc---hhhHhhcCCCCCEEecCCCcCCc---
Q psy10289 329 FTNLTNLIELDISYN-KLDRLEVASF----DPIENSLRDLKISGNNIQLSD---VKNVLDKLVKLKALSIADMNYTD--- 397 (497)
Q Consensus 329 ~~~~~~L~~L~l~~n-~l~~~~~~~~----~~~~~~L~~L~ls~n~i~~~~---~~~~~~~~~~L~~L~l~~n~i~~--- 397 (497)
+...++|++|++++| .+.......+ ..... |++|+|++|.++... +...+...++|++|++++|.|+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~-L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTY-VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCS-CCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCC-cCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 444555666666655 5554322222 22222 666666666655322 23444555667777777776653
Q ss_pred --CCcccccCCCcCcEEeC--cCCCCcccch----hhhccCCCCCEEECCCCcccc
Q psy10289 398 --IPKGLFKMNPHLQFLNL--SGNNLQDIHN----LLYQSNIKLTHLDLSRNKFKG 445 (497)
Q Consensus 398 --l~~~~~~~~~~L~~L~L--s~n~l~~~~~----~~~~~~~~L~~L~l~~n~l~~ 445 (497)
+... +...++|+.|+| ++|.+..... ..+...++|++|++++|.+..
T Consensus 111 ~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEA-LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHG-GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHH-HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 2222 345578888888 7788876543 345556889999999987764
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.42 E-value=1.7e-07 Score=81.03 Aligned_cols=89 Identities=16% Similarity=0.141 Sum_probs=41.1
Q ss_pred cCCCCCCEEECcCCCCCccCccccc----ccccCCCEEEcCCCcCCCcc---hhhHhhcCCCCCEEec--CCCcCCc---
Q psy10289 330 TNLTNLIELDISYNKLDRLEVASFD----PIENSLRDLKISGNNIQLSD---VKNVLDKLVKLKALSI--ADMNYTD--- 397 (497)
Q Consensus 330 ~~~~~L~~L~l~~n~l~~~~~~~~~----~~~~~L~~L~ls~n~i~~~~---~~~~~~~~~~L~~L~l--~~n~i~~--- 397 (497)
...++|++|++++|.+.+.....+. ..+ +|++|+|++|.|+... +...+...++|+.|++ ++|.|+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~-~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNN-TLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCS-SCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCC-CcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 3344555555555554433222221 112 2555555555554221 2233444455666666 5555542
Q ss_pred --CCcccccCCCcCcEEeCcCCCCc
Q psy10289 398 --IPKGLFKMNPHLQFLNLSGNNLQ 420 (497)
Q Consensus 398 --l~~~~~~~~~~L~~L~Ls~n~l~ 420 (497)
+.. .+...++|+.|+|++|.+.
T Consensus 141 ~~l~~-~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIAN-MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH-HHHHCSSCCEEECCCSSHH
T ss_pred HHHHH-HHHhCCCcCEEeccCCCCC
Confidence 111 1233466777777766654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.13 E-value=2.1e-06 Score=72.31 Aligned_cols=83 Identities=12% Similarity=0.224 Sum_probs=45.0
Q ss_pred CccEEEccCCcccccccccccCCCCCCEEECcCCC-CCccCccccccc---ccCCCEEEcCCCc-CCCcchhhHhhcCCC
Q psy10289 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK-LDRLEVASFDPI---ENSLRDLKISGNN-IQLSDVKNVLDKLVK 384 (497)
Q Consensus 310 ~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~---~~~L~~L~ls~n~-i~~~~~~~~~~~~~~ 384 (497)
.|++||++++.++...-..+..|++|++|++++|. +++.....+... .++|++|++++|. +++..+. .+..+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence 56666666666554444445666666666666663 555444444432 1136666666664 5543332 3344555
Q ss_pred CCEEecCCC
Q psy10289 385 LKALSIADM 393 (497)
Q Consensus 385 L~~L~l~~n 393 (497)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555555
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=8.2e-07 Score=74.80 Aligned_cols=38 Identities=24% Similarity=0.402 Sum_probs=24.8
Q ss_pred CCCcEEEccCCCCCccCCCCCCCCCCCCEEeccCCc-Cc
Q psy10289 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN-IT 154 (497)
Q Consensus 117 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-l~ 154 (497)
.+|++||++++.|++.+...+.++++|++|+|++|. ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It 99 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE 99 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC
Confidence 356777777777666666666666677777776663 44
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=3.4e-07 Score=83.18 Aligned_cols=64 Identities=23% Similarity=0.325 Sum_probs=36.1
Q ss_pred CCCCCcEEeccCCCCccCCc--ccccCCcCCcEEeccCCCCCCCCh-hhhcCCCCCCEEeccCCCCCc
Q psy10289 163 GMMNLQELYLDFNKIESIPS--SVFMHLSDLRVLSLAHNRISKLAP-RLFLKLSKLKSLDLSYNDIVE 227 (497)
Q Consensus 163 ~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~i~~ 227 (497)
++++|++|+|++|.++.++. ..+..+++|+.|+|++|+++++.. ..+..+ +|++|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence 45666666666666665442 234456666666666666665511 222222 66666666666553
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=1.5e-06 Score=78.95 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=48.5
Q ss_pred CCCCccEEEccCCccccccc--ccccCCCCCCEEECcCCCCCccC-cccccccccCCCEEEcCCCcCCCc------chhh
Q psy10289 307 SQFKLQVLCLKRNRLAKVTT--TAFTNLTNLIELDISYNKLDRLE-VASFDPIENSLRDLKISGNNIQLS------DVKN 377 (497)
Q Consensus 307 ~~~~L~~L~l~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~~~~~L~~L~ls~n~i~~~------~~~~ 377 (497)
.+++|+.|+|++|.+.++.. ..+..+++|+.|++++|++.+.. ...+..+ . |++|++++|++... -...
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~-L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-K-LEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-C-CSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-C-cceEEccCCcCccccCcchhHHHH
Confidence 35667777777777766542 33456777777777777777652 2222222 3 77777777776520 0113
Q ss_pred HhhcCCCCCEEe
Q psy10289 378 VLDKLVKLKALS 389 (497)
Q Consensus 378 ~~~~~~~L~~L~ 389 (497)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 455667776665
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.71 E-value=9.2e-05 Score=59.35 Aligned_cols=66 Identities=24% Similarity=0.347 Sum_probs=46.9
Q ss_pred CCCCCceeccCCCCcEEEEecCCCCC--CCCCCCCCCCCCceEEeecCCCCCCccccCccccCCCCCcEEEccCCCCCcc
Q psy10289 55 MCPYMCECALDDRGRYEIVCRRGDMA--NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAI 132 (497)
Q Consensus 55 ~~p~~~~c~~~~~~~~~~~c~~~~~~--~~~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~ 132 (497)
.||..|.|... .++|...+++ .+|. .++ +++++|+|++|.|+.+
T Consensus 1 ~CP~~C~C~~~-----~v~Cs~~~L~~~~vP~--~lp---------------------------~~l~~L~Ls~N~l~~l 46 (130)
T 3rfe_A 1 PCPAPCSCAGT-----LVDCGRRGLTWASLPT--AFP---------------------------VDTTELVLTGNNLTAL 46 (130)
T ss_dssp CCCTTCEEETT-----EEECCSSCCCTTTSCS--CCC---------------------------TTCSEEECTTSCCSSC
T ss_pred CcCCCCEEcCC-----EEEeCCCCCccccCCC--CCC---------------------------cCCCEEECCCCcCCcc
Confidence 48999999732 7889888876 5541 111 3567777888888887
Q ss_pred CCCCCCCCCCCCEEeccCCcCc
Q psy10289 133 GFHPFWGVPSLRYLNLTHNNIT 154 (497)
Q Consensus 133 ~~~~~~~l~~L~~L~l~~n~l~ 154 (497)
+...|..+++|+.|+|++|.+.
T Consensus 47 ~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 47 PPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp CTTTGGGCTTCCEEECCSSCCB
T ss_pred ChhhhhhccccCEEEecCCCee
Confidence 7777777777777777777553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.58 E-value=0.00014 Score=58.26 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=36.0
Q ss_pred EEecCCCcCC--cCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCCcccc
Q psy10289 387 ALSIADMNYT--DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445 (497)
Q Consensus 387 ~L~l~~n~i~--~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 445 (497)
.++.++++++ .+|.++ .++|+.|+|++|+|+.+++..|..+++|+.|+|++|++.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 5566666666 666543 1356677777777777766666666677777777766654
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.39 E-value=0.00026 Score=60.66 Aligned_cols=83 Identities=11% Similarity=0.171 Sum_probs=42.2
Q ss_pred CCEEEcCCCcCCCc---chhhHhhcCCCCCEEecCCCcCCc-----CCcccccCCCcCcEEeCcCCC---Ccccc----h
Q psy10289 360 LRDLKISGNNIQLS---DVKNVLDKLVKLKALSIADMNYTD-----IPKGLFKMNPHLQFLNLSGNN---LQDIH----N 424 (497)
Q Consensus 360 L~~L~ls~n~i~~~---~~~~~~~~~~~L~~L~l~~n~i~~-----l~~~~~~~~~~L~~L~Ls~n~---l~~~~----~ 424 (497)
|+.|+|++|.+.+. .+...+..-+.|+.|+|++|.|+. |-.. +...+.|+.|+|++|. +.... .
T Consensus 72 L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a-L~~N~tL~~L~L~n~~~~~ig~~g~~~ia 150 (197)
T 1pgv_A 72 IEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS-TLVTQSIVEFKADNQRQSVLGNQVEMDMM 150 (197)
T ss_dssp CCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH-TTTTCCCSEEECCCCSSCCCCHHHHHHHH
T ss_pred cCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH-HhhCCceeEEECCCCcCcCcCHHHHHHHH
Confidence 44444444444321 223334444555555555555542 1111 2333568888887653 33221 2
Q ss_pred hhhccCCCCCEEECCCCcc
Q psy10289 425 LLYQSNIKLTHLDLSRNKF 443 (497)
Q Consensus 425 ~~~~~~~~L~~L~l~~n~l 443 (497)
.++..-+.|+.|+++.|.+
T Consensus 151 ~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 151 MAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCCcCeEeccCCCc
Confidence 3455567888888876643
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00032 Score=60.11 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=28.0
Q ss_pred ccCCCCCCEEECcCCCCCccCcccccccc---cCCCEEEcCCCcCCCcch---hhHhhcCCCCCEEecCCC
Q psy10289 329 FTNLTNLIELDISYNKLDRLEVASFDPIE---NSLRDLKISGNNIQLSDV---KNVLDKLVKLKALSIADM 393 (497)
Q Consensus 329 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~---~~L~~L~ls~n~i~~~~~---~~~~~~~~~L~~L~l~~n 393 (497)
+..-+.|+.|+|++|++.+.....++... .+|+.|+|++|.|+.... .+.+..-+.|+.|+++++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 33444555555555555443333332211 125555555555542221 122333344555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=95.12 E-value=0.047 Score=40.94 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=33.2
Q ss_pred CCCCccCCCCCCCCCCCCEEeccCCcCccCCccccCCCCCCcEEeccCC
Q psy10289 127 SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175 (497)
Q Consensus 127 ~~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 175 (497)
..++.|+..+|.+|.+|+.+.|.. .++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence 456677777777777777777765 366677777777777777776554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.62 E-value=0.047 Score=40.97 Aligned_cols=49 Identities=16% Similarity=0.209 Sum_probs=43.2
Q ss_pred CCcCCcCCcccccCCCcCcEEeCcCCCCcccchhhhccCCCCCEEECCCC
Q psy10289 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441 (497)
Q Consensus 392 ~n~i~~l~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n 441 (497)
+-.++.|...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+.+.
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34678899999999999999999875 89999999999999999999774
Done!