RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10289
(497 letters)
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 76.4 bits (188), Expect = 1e-14
Identities = 86/313 (27%), Positives = 130/313 (41%), Gaps = 15/313 (4%)
Query: 139 GVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLA 197
G+ SL +L+L +NN+T + + + NLQ L+L NK+ IP S+F L L L L+
Sbjct: 234 GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLS 292
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
N +S P L ++L L+ L L N+ P + L+ + S P
Sbjct: 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL 352
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLK 317
+L LDL N L + + L L L+L N + KS + L+ + L+
Sbjct: 353 GKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ 412
Query: 318 RNRLAKVTTTAFTNLTNLIELDISYNKLD-RLEVASFDPIENSLRDL---KISGNNIQLS 373
N + + FT L + LDIS N L R+ +D + L K G
Sbjct: 413 DNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472
Query: 374 DVKNVLDKLVKLKALSIADMNYTD-IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIK 432
K L+ L ++ ++ +P+ L + L L LS N L S K
Sbjct: 473 GSKR-------LENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDELSSCKK 524
Query: 433 LTHLDLSRNKFKG 445
L LDLS N+ G
Sbjct: 525 LVSLDLSHNQLSG 537
Score = 66.8 bits (163), Expect = 1e-11
Identities = 87/314 (27%), Positives = 141/314 (44%), Gaps = 33/314 (10%)
Query: 109 IGPIFQQFQHLEELHITNSFIPA-IGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
I + +++ ++++N+ + I F SLRYLNL++NN T + + NL
Sbjct: 85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNL 142
Query: 168 QELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIV 226
+ L L N + IP+ + S L+VL L N + P L+ L+ L L+ N +V
Sbjct: 143 ETLDLSNNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV 201
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKK 286
+I +++ ++K+ K IYL GYN L + E+ L
Sbjct: 202 G---QIPRELGQMKSLK-------------------WIYL--GYNNLSGEIPYEIGGLTS 237
Query: 287 LETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
L L L N+ + S + LQ L L +N+L+ + +L LI LD+S N L
Sbjct: 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297
Query: 347 RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT-DIPKGLFKM 405
E+ +L L + NN + L L +L+ L + ++ +IPK L K
Sbjct: 298 G-EIPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKH 355
Query: 406 NPHLQFLNLSGNNL 419
N +L L+LS NNL
Sbjct: 356 N-NLTVLDLSTNNL 368
Score = 66.8 bits (163), Expect = 1e-11
Identities = 85/306 (27%), Positives = 132/306 (43%), Gaps = 31/306 (10%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNR 200
SL+++ L +NN++ + Y G+ +L L L +N + IPSS +L +L+ L L N+
Sbjct: 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNK 271
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+S P L KL SLDLS N + PE+ +Q L+
Sbjct: 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI------------------- 312
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
L L N + L L +L+ L L N F + K+ L VL L N
Sbjct: 313 -----LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNN 367
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380
L + NL +L + N L+ E+ SLR +++ N+ ++ +
Sbjct: 368 LTGEIPEGLCSSGNLFKLILFSNSLEG-EIPKSLGACRSLRRVRLQDNSFS-GELPSEFT 425
Query: 381 KLVKLKALSIADMNYT-DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
KL + L I++ N I + M P LQ L+L+ N + S +L +LDLS
Sbjct: 426 KLPLVYFLDISNNNLQGRINSRKWDM-PSLQMLSLARNKFFGGLPDSFGSK-RLENLDLS 483
Query: 440 RNKFKG 445
RN+F G
Sbjct: 484 RNQFSG 489
Score = 54.9 bits (132), Expect = 7e-08
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 25/204 (12%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
SLR + L N+ + L F + + L + N ++ +S + L++LSLA N+
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
P F +L++LDLS N P + EL
Sbjct: 465 FGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSEL---------------------- 501
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
+ L L N+L + DEL KKL +L L N + SFS L L L +N+L
Sbjct: 502 --MQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL 559
Query: 322 AKVTTTAFTNLTNLIELDISYNKL 345
+ N+ +L++++IS+N L
Sbjct: 560 SGEIPKNLGNVESLVQVNISHNHL 583
Score = 52.2 bits (125), Expect = 5e-07
Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 25/160 (15%)
Query: 138 WGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
W +PSL+ L+L N L +F G L+ L L N+ LS+L L L+
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLS 507
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
N++S P KL SLDLS+N + P F ++
Sbjct: 508 ENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP-------------------- 547
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
+L+ LDL NQL + L +++ L + + NH
Sbjct: 548 -VLSQ---LDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583
Score = 46.4 bits (110), Expect = 3e-05
Identities = 80/326 (24%), Positives = 132/326 (40%), Gaps = 68/326 (20%)
Query: 105 NHLTIGPIFQQFQHLEELH--------ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL 156
N+LT GPI +L+ L ++ P+I + + L L+L+ N+++
Sbjct: 246 NNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSI-----FSLQKLISLDLSDNSLSGE 299
Query: 157 LDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL 215
+ + NL+ L+L N IP ++ L L+VL L N+ S P+ K + L
Sbjct: 300 IPELVIQLQNLEILHLFSNNFTGKIPVAL-TSLPRLQVLQLWSNKFSGEIPKNLGKHNNL 358
Query: 216 KSLDLSYNDIVEINPE-------IFKDI-----------------QELKTFKCRSCGLEN 251
LDLS N++ PE +FK I + L+ + +
Sbjct: 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418
Query: 252 INPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKL 311
P ++ L + +LD+ N L+ + D+ L+ L L N F L SF S+ +L
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK-RL 477
Query: 312 QVLCLKRNRLAKVTTTAFTNLT------------------------NLIELDISYNKLDR 347
+ L L RN+ + +L+ L+ LD+S+N+L
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537
Query: 348 LEVASFDPIENSLRDLKISGNNIQLS 373
ASF + L L +S N QLS
Sbjct: 538 QIPASFSEMP-VLSQLDLSQN--QLS 560
Score = 30.2 bits (68), Expect = 2.8
Identities = 25/114 (21%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
P + LE L ++ + + L L L+ N ++ + L L
Sbjct: 469 PDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528
Query: 171 YLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
L N++ IP+S F + L L L+ N++S P+ + L +++S+N
Sbjct: 529 DLSHNQLSGQIPAS-FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHN 581
>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat.
Length = 60
Score = 59.5 bits (145), Expect = 1e-11
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
NL+ L L N++ IP F L +L+VL L+ N ++ ++P F L L+SLDLS N++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 58.3 bits (142), Expect = 3e-11
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
+L+ L+L++N +T + D FKG+ NL+ L L N + SI F L LR L L+ N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.5 bits (119), Expect = 4e-08
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+L+ L ++N+ + I F G+P+L+ L+L+ NN+TS+ F G+ +L+ L L N +
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 49.1 bits (118), Expect = 6e-08
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGL 249
L+ L L++NR++ + F L LK LDLS N++ I+PE F + L++ L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 46.8 bits (112), Expect = 3e-07
Identities = 25/61 (40%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
L+ L L NRL + AF L NL LD+S N L + +F + SLR L +SGNN
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLDLSGNN 59
Query: 370 I 370
+
Sbjct: 60 L 60
Score = 46.4 bits (111), Expect = 4e-07
Identities = 25/60 (41%), Positives = 33/60 (55%)
Query: 384 KLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
LK+L +++ T IP G FK P+L+ L+LSGNNL I + L LDLS N
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 41.0 bits (97), Expect = 4e-05
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
L++L L N VI + +F L+VL L N L ++ AF+ L +L LD+S N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 40.6 bits (96), Expect = 6e-05
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 214 KLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273
LKSLDLS N + I FK L +L LDL N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKG------------------------LPNLKVLDLSGNNL 36
Query: 274 KYLLADELEDLKKLETLLLDGNHF 297
+ + L L +L L GN+
Sbjct: 37 TSISPEAFSGLPSLRSLDLSGNNL 60
Score = 35.2 bits (82), Expect = 0.004
Identities = 20/59 (33%), Positives = 28/59 (47%)
Query: 263 LIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
L LDL N+L + + L L+ L L GN+ I ++FS L+ L L N L
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
Score = 34.8 bits (81), Expect = 0.006
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 26/86 (30%)
Query: 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADM 393
NL LD+S N+L + +F + N L+ L +SGNN+
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPN-LKVLDLSGNNL----------------------- 36
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNL 419
T I F P L+ L+LSGNNL
Sbjct: 37 --TSISPEAFSGLPSLRSLDLSGNNL 60
Score = 32.5 bits (75), Expect = 0.040
Identities = 13/43 (30%), Positives = 21/43 (48%)
Query: 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+L+ L+LS N L I + ++ L LDLS N ++
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEA 43
Score = 28.3 bits (64), Expect = 1.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
+ LK LDLS N++ I+PE F + L
Sbjct: 23 LPNLKVLDLSGNNLTSISPEAFSGLPSLRSLD 54
>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function
unknown].
Length = 394
Score = 50.4 bits (120), Expect = 1e-06
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 7/174 (4%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+L+EL ++++ I ++ P +P+L+ L+L+ N+++ L + NL L L NKI
Sbjct: 141 NLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFNDLSDLPKLLSN-LSNLNNLDLSGNKI 198
Query: 178 ESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQ 237
+P + LS L L L++N I +L L L L+LS N + ++ PE ++
Sbjct: 199 SDLPPEI-ELLSALEELDLSNNSIIEL-LSSLSNLKNLSGLELSNNKLEDL-PESIGNLS 255
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291
L+T + + +I+ L +L LDL N L L L LE LL
Sbjct: 256 NLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALLLLLLELLL 307
Score = 49.6 bits (118), Expect = 2e-06
Identities = 74/262 (28%), Positives = 121/262 (46%), Gaps = 19/262 (7%)
Query: 139 GVPSLRYLNLTHNNITSLLD--YNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
+ L L+L + S LD N ++ L L L+ N++ S S + L++L L L
Sbjct: 65 SLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELL-ELTNLTSLDL 123
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI--FKDIQELKTFKCRSCGLENINP 254
+N I+ + P + L S LK LDLS N I + + +++ L L +
Sbjct: 124 DNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKL-- 181
Query: 255 MMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVL 314
S L++L LDL N++ L E+E L LE L L N +L S S+ L L
Sbjct: 182 --LSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLS-SLSNLKNLSGL 237
Query: 315 CLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQL 372
L N+L + + NL+NL LD+S N++ +S + + +LR+L +SGN++
Sbjct: 238 ELSNNKLEDLPES-IGNLSNLETLDLSNNQI-----SSISSLGSLTNLRELDLSGNSLSN 291
Query: 373 SDVKNVLDKLVKLKALSIADMN 394
+ L L+ L++
Sbjct: 292 ALPLIALLLLLLELLLNLLLTL 313
Score = 46.9 bits (111), Expect = 1e-05
Identities = 49/185 (26%), Positives = 80/185 (43%), Gaps = 9/185 (4%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L +L LDL N + + L+ L L N + + L+ L L N
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFN 173
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
L+ + +NL+NL LD+S NK+ L ++L +L +S N+I + L
Sbjct: 174 DLSDLPK-LLSNLSNLNNLDLSGNKISDLPPEIELL--SALEELDLSNNSIIEL--LSSL 228
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
L L L +++ D+P+ + ++ L+ L+LS N + I +L L LDLS
Sbjct: 229 SNLKNLSGLELSNNKLEDLPESIGNLSN-LETLDLSNNQISSISSLGS--LTNLRELDLS 285
Query: 440 RNKFK 444
N
Sbjct: 286 GNSLS 290
Score = 29.2 bits (65), Expect = 5.6
Identities = 52/227 (22%), Positives = 82/227 (36%), Gaps = 43/227 (18%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
+ L SLDL N+I +I P I + L L S
Sbjct: 116 TNLTSLDLDNNNITDIPPLIGL----------LKSNLKELDLS----------------- 148
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSF 128
+I + N LK + N + + +L L ++ +
Sbjct: 149 DNKIESLPSPLRNLP----------NLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNK 197
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL 188
I + P + S NN L + + NL L L NK+E +P S+ +L
Sbjct: 198 ISDL--PPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESI-GNL 254
Query: 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD 235
S+L L L++N+IS ++ L+ L+ LDLS N + P I
Sbjct: 255 SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIALL 299
>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional.
Length = 754
Score = 48.5 bits (115), Expect = 7e-06
Identities = 61/226 (26%), Positives = 111/226 (49%), Gaps = 30/226 (13%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSD-LRVLSLAHNRISKL 204
L L +N + SL + N +G N++ LY + N++ SIP++ L D ++ + L+ NRI++L
Sbjct: 204 LILDNNELKSLPE-NLQG--NIKTLYANSNQLTSIPAT----LPDTIQEMELSINRITEL 256
Query: 205 APRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLI 264
RL S L+SLDL +N I + + ++++ L + +I + + + +
Sbjct: 257 PERL---PSALQSLDLFHNKISCLPENLPEELRYLSVYD------NSIRTLPAHLPSGIT 307
Query: 265 YLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV 324
+L++ N L L LK LE G + L S + LQVL + +N++ +
Sbjct: 308 HLNVQSNSLTALPETLPPGLKTLEA----GENALTSLPASLPPE--LQVLDVSKNQITVL 361
Query: 325 TTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
T +T LD+S N L L + + +L+ ++ S NN+
Sbjct: 362 PETLPPTIT---TLDVSRNALTNLP----ENLPAALQIMQASRNNL 400
Score = 30.8 bits (69), Expect = 2.2
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 25/107 (23%)
Query: 143 LRYLNLTHNNITSLLDYNFKGM------------------MNLQELYLDFNKIESIPSSV 184
LRYL++ N+I +L + G+ L+ L N + S+P+S+
Sbjct: 285 LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASL 344
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
+L+VL ++ N+I+ L L + +LD+S N + + PE
Sbjct: 345 ---PPELQVLDVSKNQITVLPETL---PPTITTLDVSRNALTNL-PE 384
>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies). Leucine rich
repeats are short sequence motifs present in a number of
proteins with diverse functions and cellular locations.
These repeats are usually involved in protein-protein
interactions. Each Leucine Rich Repeat is composed of a
beta-alpha unit. These units form elongated non-globular
structures. Leucine Rich Repeats are often flanked by
cysteine rich domains.
Length = 43
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS 182
+L L+L++N IT L + NL+ L L NKI +
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 36.7 bits (86), Expect = 0.001
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 407 PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+L+ L+LS N + D+ L + L LDLS NK
Sbjct: 1 TNLETLDLSNNQITDLPPL--SNLPNLETLDLSGNKITDLSP 40
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
NL+ L L N+I +P +L +L L L+ N+I+ L+P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 35.9 bits (84), Expect = 0.002
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP 230
L L L++N+I+ L P L L++LDLS N I +++P
Sbjct: 3 LETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 30.5 bits (70), Expect = 0.15
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
L+ L L N++ + +NL NL LD+S NK+ L
Sbjct: 2 NLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDLSP 40
Score = 29.8 bits (68), Expect = 0.23
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 263 LIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L LDL NQ+ L L +L LETL L GN
Sbjct: 3 LETLDLSNNQITDL--PPLSNLPNLETLDLSGNKI 35
Score = 29.4 bits (67), Expect = 0.33
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 384 KLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL 425
L+ L +++ TD+P P+L+ L+LSGN + D+ L
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSPL 41
Score = 27.8 bits (63), Expect = 1.3
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL 156
+LE L ++N+ I + P +P+L L+L+ N IT L
Sbjct: 1 TNLETLDLSNNQITDLP--PLSNLPNLETLDLSGNKITDL 38
Score = 27.1 bits (61), Expect = 2.4
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 214 KLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINP 254
L++LDLS N I ++ P ++ L+T + +++P
Sbjct: 2 NLETLDLSNNQITDLPP--LSNLPNLETLDLSGNKITDLSP 40
Score = 26.3 bits (59), Expect = 5.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)
Query: 333 TNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQ 371
TNL LD+S N++ L P+ N +L L +SGN I
Sbjct: 1 TNLETLDLSNNQITDL-----PPLSNLPNLETLDLSGNKIT 36
>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease
inhibitor (RI)-like subfamily. LRRs are 20-29 residue
sequence motifs present in many proteins that
participate in protein-protein interactions and have
different functions and cellular locations. LRRs
correspond to structural units consisting of a beta
strand (LxxLxLxxN/CxL conserved pattern) and an alpha
helix. This alignment contains 12 strands corresponding
to 11 full repeats, consistent with the extent observed
in the subfamily acting as Ran GTPase Activating
Proteins (RanGAP1).
Length = 319
Score = 41.2 bits (97), Expect = 0.001
Identities = 43/187 (22%), Positives = 68/187 (36%), Gaps = 34/187 (18%)
Query: 141 PSLRYLNLTHNNI---------TSLLDYNFKGMMNLQELYLDFNKIESIP----SSVFMH 187
SL+ L L +N + L D L++L L N++E +
Sbjct: 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLP----PALEKLVLGRNRLEGASCEALAKALRA 163
Query: 188 LSDLRVLSLAHNRIS-KLAPRLFLKL---SKLKSLDLSYNDIVEIN----PEIFKDIQEL 239
DL+ L+LA+N I L L L+ LDL+ N + + E ++ L
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223
Query: 240 KTF-----KCRSCGLENINPMMYSILADLIYLDLGYNQLKYL----LADELEDLKKLETL 290
+ G + + S L+ L L N + LA+ L + + L L
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLEL 283
Query: 291 LLDGNHF 297
L GN F
Sbjct: 284 DLRGNKF 290
Score = 40.8 bits (96), Expect = 0.001
Identities = 52/228 (22%), Positives = 81/228 (35%), Gaps = 33/228 (14%)
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQ---ELKTFKCRSCGLENINPMM 256
R + + K L+ LDLS N + + + + L+ K + GL
Sbjct: 68 RGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG---DRG 124
Query: 257 YSILA--------DLIYLDLGYNQLKYL----LADELEDLKKLETLLLDGNHFPV----I 300
+LA L L LG N+L+ LA L + L+ L L N
Sbjct: 125 LRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA 184
Query: 301 LEKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI 356
L + + L+VL L N L A +L +L L++ N L A+
Sbjct: 185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASA 244
Query: 357 ----ENSLRDLKISGNNIQLSDVKN---VLDKLVKLKALSIADMNYTD 397
SL L +S N+I K+ VL + L L + + +
Sbjct: 245 LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292
Score = 38.9 bits (91), Expect = 0.004
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 13/99 (13%)
Query: 140 VPSLRYLNLTHNNITS----LLDYNFKGMMNLQELYLDFNKIESIPSS----VFMHLSDL 191
L+ LNL +N I L K NL+ L L+ N + +S L L
Sbjct: 164 NRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSL 223
Query: 192 RVLSLAHNRI-----SKLAPRLFLKLSKLKSLDLSYNDI 225
VL+L N + + LA L L +L LS NDI
Sbjct: 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262
Score = 38.5 bits (90), Expect = 0.006
Identities = 57/260 (21%), Positives = 88/260 (33%), Gaps = 54/260 (20%)
Query: 141 PSLRYLNLTHNN------ITSLLDYNFKGMMNLQELYLDFNKI-----ESIPSSVFMHLS 189
PSL+ L L+ N L LQEL L N + + S + S
Sbjct: 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES--LLRSS 108
Query: 190 DLRVLSLAHNRISKLAPRLFLK-----LSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
L+ L L +N + RL K L+ L L N + + + +
Sbjct: 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN---RLEGASCEALAKALRANR 165
Query: 245 RSCGLENINPMMYSILADLIYLDLGYNQLKY----LLADELEDLKKLETLLLDGNHFP-- 298
DL L+L N + LA+ L+ LE L L+ N
Sbjct: 166 -----------------DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208
Query: 299 --VILEKSFSSQFKLQVLCLKRNRLAKVTTTAF-----TNLTNLIELDISYNKLDRLEVA 351
L ++ +S L+VL L N L A + +L+ L +S N +
Sbjct: 209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK 268
Query: 352 SF-DPIEN--SLRDLKISGN 368
+ + SL +L + GN
Sbjct: 269 DLAEVLAEKESLLELDLRGN 288
Score = 36.6 bits (85), Expect = 0.022
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 303 KSFSSQFKLQVLCLKRNRLAKVTT----TAFTNLT-NLIELDISYNKLDRLEVASFDPIE 357
+S LQ L L N L +L L +L + N RLE AS + +
Sbjct: 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN---RLEGASCEALA 158
Query: 358 N------SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI-PKG------LFK 404
L++L ++ N I + ++ + + L L + D+N + +G
Sbjct: 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218
Query: 405 MNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNK 442
L+ LNL NNL D + + L NI L L LS N
Sbjct: 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261
Score = 35.4 bits (82), Expect = 0.047
Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 28/192 (14%)
Query: 277 LADELEDLKKLETLLLDGNHFPVILE------KSFSSQFKLQVLCLKRNRLAKVTTTAFT 330
LA L L+ L L N I + + LQ L L N L
Sbjct: 43 LASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102
Query: 331 NLT---NLIELDISYNKLD----RLEVASFDPIENSLRDLKISGNNIQ---LSDVKNVLD 380
+L +L EL ++ N L RL + +L L + N ++ + L
Sbjct: 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR 162
Query: 381 KLVKLKALSIADMNYTD--IPKGL--FKMNPHLQFLNLSGNNLQDI------HNLLYQSN 430
LK L++A+ D I K N +L+ L+L+ N L D L S
Sbjct: 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SL 220
Query: 431 IKLTHLDLSRNK 442
L L+L N
Sbjct: 221 KSLEVLNLGDNN 232
Score = 34.6 bits (80), Expect = 0.11
Identities = 23/91 (25%), Positives = 32/91 (35%), Gaps = 10/91 (10%)
Query: 363 LKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIP-KGLFKM---NPHLQFLNLSGNN 418
L + G ++ +L KL+ L+ L + + K L P L+ L LS N
Sbjct: 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNE 62
Query: 419 LQDIHNLL------YQSNIKLTHLDLSRNKF 443
I L L LDLS N
Sbjct: 63 TGRIPRGLQSLLQGLTKGCGLQELDLSDNAL 93
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional.
Length = 623
Score = 36.7 bits (85), Expect = 0.032
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 13/106 (12%)
Query: 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
LQ + L N + + ++T+L LD+SYN + S + SLR L ++GN+
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL-TSLRILNLNGNS 501
Query: 370 IQLSDVKNVLDKLVKLKALSIADMNYTD------IPKGLFKMNPHL 409
+ + + + L A N+TD IP GL PHL
Sbjct: 502 LS-----GRVPAALGGRLLHRASFNFTDNAGLCGIP-GLRACGPHL 541
Score = 35.6 bits (82), Expect = 0.062
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKL 204
L L + + + + + +LQ + L N I +IP S ++ L VL L++N +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGS 481
Query: 205 APRLFLKLSKLKSLDLSYN 223
P +L+ L+ L+L+ N
Sbjct: 482 IPESLGQLTSLRILNLNGN 500
Score = 35.2 bits (81), Expect = 0.084
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 140 VPSLRYL---NLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLS 195
+ LR+L NL+ N+I + + + +L+ L L +N SIP S+ L+ LR+L+
Sbjct: 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILN 496
Query: 196 LAHNRISKLAP 206
L N +S P
Sbjct: 497 LNGNSLSGRVP 507
Score = 34.4 bits (79), Expect = 0.13
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445
HLQ +NLSGN+++ S L LDLS N F G
Sbjct: 443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480
Score = 31.7 bits (72), Expect = 0.96
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325
L L L+ + +++ L+ L+++ L GN + S S L+VL L N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 326 TTAFTNLTNLIELDISYNKL 345
+ LT+L L+++ N L
Sbjct: 483 PESLGQLTSLRILNLNGNSL 502
Score = 31.3 bits (71), Expect = 1.2
Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 24/85 (28%)
Query: 211 KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270
KL L+S++LS N I P + L LDL Y
Sbjct: 440 KLRHLQSINLSGNSI------------------------RGNIPPSLGSITSLEVLDLSY 475
Query: 271 NQLKYLLADELEDLKKLETLLLDGN 295
N + + L L L L L+GN
Sbjct: 476 NSFNGSIPESLGQLTSLRILNLNGN 500
Score = 29.8 bits (67), Expect = 4.2
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELK 240
L L+ ++L+ N I P ++ L+ LDLSYN PE + L+
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493
>gnl|CDD|197688 smart00370, LRR, Leucine-rich repeats, outliers.
Length = 24
Score = 30.4 bits (70), Expect = 0.091
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 166 NLQELYLDFNKIESIPSSVF 185
NL+EL L N++ S+P F
Sbjct: 3 NLRELDLSNNQLSSLPPGAF 22
Score = 28.5 bits (65), Expect = 0.59
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 LSDLRVLSLAHNRISKLAPRLF 209
L +LR L L++N++S L P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 26.9 bits (61), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 212 LSKLKSLDLSYNDIVEINPEIF 233
L L+ LDLS N + + P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 26.2 bits (59), Expect = 3.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 8 MSKLKSLDLSYNDIVEINPEIF 29
+ L+ LDLS N + + P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 25.4 bits (57), Expect = 5.9
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 141 PSLRYLNLTHNNITSL 156
P+LR L+L++N ++SL
Sbjct: 2 PNLRELDLSNNQLSSL 17
Score = 25.4 bits (57), Expect = 6.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 407 PHLQFLNLSGNNLQDIHN 424
P+L+ L+LS N L +
Sbjct: 2 PNLRELDLSNNQLSSLPP 19
>gnl|CDD|197687 smart00369, LRR_TYP, Leucine-rich repeats, typical (most populated)
subfamily.
Length = 24
Score = 30.4 bits (70), Expect = 0.091
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 166 NLQELYLDFNKIESIPSSVF 185
NL+EL L N++ S+P F
Sbjct: 3 NLRELDLSNNQLSSLPPGAF 22
Score = 28.5 bits (65), Expect = 0.59
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 188 LSDLRVLSLAHNRISKLAPRLF 209
L +LR L L++N++S L P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 26.9 bits (61), Expect = 1.5
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 212 LSKLKSLDLSYNDIVEINPEIF 233
L L+ LDLS N + + P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 26.2 bits (59), Expect = 3.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 8 MSKLKSLDLSYNDIVEINPEIF 29
+ L+ LDLS N + + P F
Sbjct: 1 LPNLRELDLSNNQLSSLPPGAF 22
Score = 25.4 bits (57), Expect = 5.9
Identities = 8/16 (50%), Positives = 14/16 (87%)
Query: 141 PSLRYLNLTHNNITSL 156
P+LR L+L++N ++SL
Sbjct: 2 PNLRELDLSNNQLSSL 17
Score = 25.4 bits (57), Expect = 6.5
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 407 PHLQFLNLSGNNLQDIHN 424
P+L+ L+LS N L +
Sbjct: 2 PNLRELDLSNNQLSSLPP 19
>gnl|CDD|205399 pfam13218, DUF4026, Protein of unknown function (DUF4026). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 450 amino acids in length.
The family is found in association with pfam10077.
Length = 323
Score = 31.6 bits (72), Expect = 0.76
Identities = 18/53 (33%), Positives = 21/53 (39%)
Query: 78 DMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130
PI IGQ G E L VP EE H+ Q + LEE+ P
Sbjct: 221 PFNEPILIGQTQSGYEYLVAVPFEEGLRHVGQSTPIDQLRPLEEMRFELQGAP 273
>gnl|CDD|130522 TIGR01455, glmM, phosphoglucosamine mutase. This model describes
GlmM, phosphoglucosamine mutase, also designated in MrsA
and YhbF E. coli, UreC in Helicobacter pylori, and
femR315 or FemD in Staphlococcus aureus. It converts
glucosamine-6-phosphate to glucosamine-1-phosphate as
part of the pathway toward UDP-N-acetylglucosamine for
peptidoglycan and lipopolysaccharides [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Central intermediary metabolism, Amino
sugars].
Length = 443
Score = 31.2 bits (71), Expect = 1.4
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLR-VLSLAHNRISKLAPRLFLKL 212
K + Y++F K ++P + LS L+ VL A+ K+AP +F +L
Sbjct: 147 KRYPDAVGRYIEFLK-STLPRG--LTLSGLKVVLDCANGAAYKVAPHVFREL 195
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 29.6 bits (67), Expect = 3.7
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 109 IGPIFQQFQHLEELH-ITNSFIPAIGFHPFW 138
IG IFQ + +E L + N +G+ P W
Sbjct: 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTW 111
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P. syringae 6; Provisional.
Length = 1153
Score = 29.8 bits (67), Expect = 4.2
Identities = 41/145 (28%), Positives = 57/145 (39%), Gaps = 29/145 (20%)
Query: 152 NITSLLDYNFKGM----------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
N+ SL N G N+ L LD IE PS+ + L +L L L +
Sbjct: 702 NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSN--LRLENLDELILCEMKS 759
Query: 202 SKLAPR------LFLKLS-KLKSLDLSYN-DIVEINPEI--FKDIQELKTFKCRSCGLEN 251
KL R L LS L L LS +VE+ I ++ L+ C N
Sbjct: 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI-----N 814
Query: 252 INPMMYSI-LADLIYLDL-GYNQLK 274
+ + I L L LDL G ++L+
Sbjct: 815 LETLPTGINLESLESLDLSGCSRLR 839
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 29.2 bits (65), Expect = 5.1
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 110 GPIFQQFQHLEELHI-TNSFIPAIGFHPFW 138
G IFQQF + L + N I A+G PFW
Sbjct: 89 GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 28.7 bits (65), Expect = 5.8
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 109 IGPIFQQFQHLEELH-ITNSFIPAIGFHPFW 138
IG IFQQF +E L + N +G W
Sbjct: 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTW 110
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 29.2 bits (66), Expect = 6.1
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 75 RRGDMANPIPIGQM-------DLGTEVLKIVPSEENPNHLTIGPI-FQ 114
+R ++PI +G M L +IV E H+ GP+ FQ
Sbjct: 445 QRSRGSHPIYLGSMHYDISYAQLKRNAQRIVYDPELQMHILRGPLHFQ 492
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of
unknown function, expressed in wheat and induced by
aluminum. Wali7 has a single domain similar to the
glutamine amidotransferase domain of
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The Wali7 domain is also somewhat
similar to the Ntn hydrolase fold of the proteasomal
alph and beta subunits.
Length = 224
Score = 28.8 bits (65), Expect = 6.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLF 209
PS+VF+HL L+ +H+ S L PRLF
Sbjct: 39 PSAVFVHLGAAGFLAYSHHNQSPLHPRLF 67
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein. This domain family
is found in eukaryotes, and is approximately 120 amino
acids in length. There are two conserved sequence
motifs: YGL and LRDR. This family is related to GATase
enzyme domains.
Length = 228
Score = 28.7 bits (65), Expect = 6.4
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLF 209
P++V ++ D L+ +H++ S L PRLF
Sbjct: 43 PNAVSVNFGDSAFLAYSHSKQSPLLPRLF 71
>gnl|CDD|237595 PRK14050, PRK14050, ferrichrome receptor precursor protein;
Provisional.
Length = 728
Score = 29.0 bits (65), Expect = 6.6
Identities = 10/38 (26%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 97 IVPS-EENPNHLTIGPIFQQFQHLEELHITNSFIPAIG 133
I+P P+ T ++ L+++H+ N F+P +G
Sbjct: 247 IMPQITYAPDDATSLTVYGYLSGLDQVHVGNGFLPYVG 284
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 29.0 bits (65), Expect = 8.2
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIP 399
N LRDL ++ + L+++ KLK SI M++ D P
Sbjct: 323 NVLRDLLAELMKKEIKNKSEWLERVKKLKKESIPRMDFDDKP 364
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0925 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,054,824
Number of extensions: 2480284
Number of successful extensions: 2449
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2354
Number of HSP's successfully gapped: 114
Length of query: 497
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 396
Effective length of database: 6,457,848
Effective search space: 2557307808
Effective search space used: 2557307808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (26.9 bits)