RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10289
(497 letters)
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 214 bits (546), Expect = 6e-64
Identities = 84/390 (21%), Positives = 148/390 (37%), Gaps = 62/390 (15%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLT-IGP-IF 113
CP CEC+ DR ++C R +P G + T +L + N + + F
Sbjct: 3 CPPRCECSAQDR---AVLCHRKRFVA-VPEG-IPTETRLLDL-----GKNRIKTLNQDEF 52
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD 173
F HLEEL + + + A+ F + +LR L L N + + F G+ NL +L +
Sbjct: 53 ASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112
Query: 174 FNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIF 233
NKI + +F L +L+ L + N + ++ R F L+ L+ L L ++ I E
Sbjct: 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 234 KDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293
L LI L L + + + + L +L+ L +
Sbjct: 173 SH------------------------LHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
+ + + L L + L V A +L L L++SYN + +E +
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML 268
Query: 354 DPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLN 413
+ L+++++ G + + F+ +L+ LN
Sbjct: 269 HELLR-LQEIQLVGGQL-------------------------AVVEPYAFRGLNYLRVLN 302
Query: 414 LSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+SGN L + ++ S L L L N
Sbjct: 303 VSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Score = 205 bits (524), Expect = 9e-61
Identities = 76/306 (24%), Positives = 127/306 (41%), Gaps = 30/306 (9%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
R L+L N I +L F +L+EL L+ N + ++ F +L +LR L L NR
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+ + +F LS L LD+S N IV + +F+D L
Sbjct: 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQD------------------------L 127
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+L L++G N L Y+ L LE L L+ + I ++ S L VL L+
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187
Query: 321 LAKVTTTAFTNLTNLIELDISYNK-LDRLEVASFDPIENSLRDLKISGNNIQ-LSDVKNV 378
+ + +F L L L+IS+ LD + + +L L I+ N+ +
Sbjct: 188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPY--LA 243
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
+ LV L+ L+++ + I + LQ + L G L + ++ L L++
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNV 303
Query: 439 SRNKFK 444
S N+
Sbjct: 304 SGNQLT 309
Score = 144 bits (364), Expect = 5e-38
Identities = 52/281 (18%), Positives = 93/281 (33%), Gaps = 53/281 (18%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVE 227
+ + + ++P + ++ R+L L NRI L F L+ L+L+ N +
Sbjct: 14 RAVLCHRKRFVAVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKL 287
+ P F + L +L L L N+LK + L L
Sbjct: 71 VEPGAFNN------------------------LFNLRTLGLRSNRLKLIPLGVFTGLSNL 106
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
L + N ++L+ F + L+ L + N L ++ AF+ L +L +L + L
Sbjct: 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS 166
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
+ + + L L++ NI I FK
Sbjct: 167 IPTEALSHLHG-LIVLRLRHLNI-------------------------NAIRDYSFKRLY 200
Query: 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
L+ L +S D + LT L ++
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY 241
Score = 104 bits (260), Expect = 5e-24
Identities = 45/219 (20%), Positives = 87/219 (39%), Gaps = 36/219 (16%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++ L+ L L ++ I E L I L L H + + + Y +
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEAL---SHLHGL----IVLRLRHLNINAIRDYSFK------ 197
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
LK++ P T+ P +L L IT+
Sbjct: 198 -----------------------RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC 234
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
+ A+ + + LR+LNL++N I+++ ++ LQE+ L ++ + F
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIV 226
L+ LRVL+++ N+++ L +F + L++L L N +
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
Score = 30.5 bits (69), Expect = 1.4
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKD 31
+ L+ L+L+ N + + P F +
Sbjct: 49 QDEFASFPHLEELELNENIVSAVEPGAFNN 78
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+S L LD+S N IV + +F+D
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQD 126
Score = 28.9 bits (65), Expect = 4.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ LKSL++ ND+V I+ F
Sbjct: 127 LYNLKSLEVGDNDLVYISHRAFSG 150
Score = 28.1 bits (63), Expect = 7.3
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L++L L N + I +F
Sbjct: 79 LFNLRTLGLRSNRLKLIPLGVFTG 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A
{Anopheles gambiae}
Length = 390
Score = 204 bits (521), Expect = 3e-61
Identities = 80/350 (22%), Positives = 143/350 (40%), Gaps = 20/350 (5%)
Query: 94 VLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNI 153
V V + + G + + + NS + + + LNL I
Sbjct: 22 VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQI 81
Query: 154 TSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLS 213
+ Y F +Q+LY+ FN I +P VF ++ L VL L N +S L +F
Sbjct: 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTP 141
Query: 214 KLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273
KL +L +S N++ I + F+ L+ + S L +++ S++ L + ++ YN L
Sbjct: 142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLL 198
Query: 274 KYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLT 333
L +E L N V+ L +L L+ N L N
Sbjct: 199 S-----TLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDT--AWLLNYP 248
Query: 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADM 393
L+E+D+SYN+L+++ F ++ L L IS N +L + + LK L ++
Sbjct: 249 GLVEVDLSYNELEKIMYHPFVKMQR-LERLYISNN--RLVALNLYGQPIPTLKVLDLSHN 305
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+ + + + L+ L L N++ + ++ L +L LS N +
Sbjct: 306 HLLHVERNQPQF-DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 351
Score = 180 bits (459), Expect = 3e-52
Identities = 66/326 (20%), Positives = 125/326 (38%), Gaps = 20/326 (6%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+ F+ +E L++ + I I + F +++ L + N I L + F+ + L L
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
L+ N + S+P +F + L LS+++N + ++ F + L++L LS N + ++
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 183
Query: 232 IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291
+ + + +I + LD +N + + +L L
Sbjct: 184 LIPSLFHAN--------VSYNLLSTLAIPIAVEELDASHNSINVV---RGPVNVELTILK 232
Query: 292 LDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVA 351
L N+ + L + L N L K+ F + L L IS N+L L
Sbjct: 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-L 289
Query: 352 SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF 411
PI L+ L +S N L V+ + +L+ L + + + L+
Sbjct: 290 YGQPIPT-LKVLDLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKN 343
Query: 412 LNLSGNNLQDIHNLLYQSNIKLTHLD 437
L LS N+ N+ +D
Sbjct: 344 LTLSHNDWDCNSLRALFRNVARPAVD 369
Score = 149 bits (378), Expect = 1e-40
Identities = 55/294 (18%), Positives = 112/294 (38%), Gaps = 39/294 (13%)
Query: 157 LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLK 216
+D N + ++++D + + L++ ++++ ++ + KL L +++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 217 SLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276
L+L+ I EI+ F + L +G+N ++YL
Sbjct: 73 LLNLNDLQIEEIDTYAFAY------------------------AHTIQKLYMGFNAIRYL 108
Query: 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLI 336
+++ L L+L+ N + F + KL L + N L ++ F T+L
Sbjct: 109 PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168
Query: 337 ELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT 396
L +S N+L ++++ SL +S N + L + ++ L + +
Sbjct: 169 NLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS------TLAIPIAVEELDASHNSIN 218
Query: 397 DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+ + L L L NNL D LL L +DLS N+ +
Sbjct: 219 VVRGPVN---VELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYNELEKIMYHP 267
Score = 83.2 bits (206), Expect = 2e-17
Identities = 42/227 (18%), Positives = 82/227 (36%), Gaps = 48/227 (21%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+ L++L LS N + ++ + + + ++ S
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLIPSLF----------HANVSYNLLS-------------- 199
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPN---------HLTIGPIFQQFQH 118
+A PI + ++D + +V N +LT +
Sbjct: 200 ----------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 249
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L E+ ++ + + I +HPF + L L +++N + + L+ + + L+ L L N +
Sbjct: 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 308
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + L L L HN I L LK+L LS+ND
Sbjct: 309 HVERNQP-QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDW 351
Score = 65.1 bits (159), Expect = 1e-11
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F + Q LE L+I+N+ + A+ + +P+L+ L+L+HN++ + + N L+ LY
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLY 324
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
LD N I ++ S L+ L+L+HN + R + + + D
Sbjct: 325 LDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQ 373
Score = 28.9 bits (65), Expect = 3.9
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
L +++ L+L+ I EI+ F L+
Sbjct: 64 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 99
Score = 28.5 bits (64), Expect = 5.0
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
L+ L +DLSYN++ +I F +Q L+
Sbjct: 243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil,
helix-loop-helix, leucine-rich repeat, protein; HET: NAG
MAN; 2.70A {Anopheles gambiae}
Length = 597
Score = 201 bits (513), Expect = 4e-58
Identities = 78/341 (22%), Positives = 140/341 (41%), Gaps = 20/341 (5%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ G + + + NS + + + LNL I + Y F
Sbjct: 37 QTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFA 96
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+Q+LY+ FN I +P VF ++ L VL L N +S L +F KL +L +S
Sbjct: 97 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE 282
N++ I + F+ L+ + S L +++ S++ L + ++ YN L L
Sbjct: 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHVDL---SLIPSLFHANVSYNLLS-----TLA 208
Query: 283 DLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY 342
+E L N V+ L +L L+ N L N L+E+D+SY
Sbjct: 209 IPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTDTA--WLLNYPGLVEVDLSY 263
Query: 343 NKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
N+L+++ F ++ L L IS N +L + + LK L ++ + + +
Sbjct: 264 NELEKIMYHPFVKMQR-LERLYISNN--RLVALNLYGQPIPTLKVLDLSHNHLLHVERNQ 320
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+ L+ L L N++ + ++ L +L LS N +
Sbjct: 321 PQF-DRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDW 357
Score = 175 bits (446), Expect = 1e-48
Identities = 66/326 (20%), Positives = 126/326 (38%), Gaps = 20/326 (6%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+ F+ +E L++ + I I + F +++ L + N I L + F+ + L L
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
L+ N + S+P +F + L LS+++N + ++ F + L++L LS N + ++
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189
Query: 232 IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291
+ + + +I + LD +N + + +L L
Sbjct: 190 LIPSLFHAN--------VSYNLLSTLAIPIAVEELDASHNSINVV---RGPVNVELTILK 238
Query: 292 LDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVA 351
L N+ + L + L N L K+ F + L L IS N+L L +
Sbjct: 239 LQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLY 296
Query: 352 SFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF 411
PI L+ L +S N L V+ + +L+ L + + + L+
Sbjct: 297 -GQPIPT-LKVLDLSHN--HLLHVERNQPQFDRLENLYLDHNSIVTLKLSTH---HTLKN 349
Query: 412 LNLSGNNLQDIHNLLYQSNIKLTHLD 437
L LS N+ N+ +D
Sbjct: 350 LTLSHNDWDCNSLRALFRNVARPAVD 375
Score = 146 bits (370), Expect = 3e-38
Identities = 56/309 (18%), Positives = 111/309 (35%), Gaps = 44/309 (14%)
Query: 147 NLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF-----MHLSDLRVLSLAHNRI 201
+N +Y + I+ V+ + L++ ++++ ++ +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
KL L +++ L+L+ I EI+ F
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY------------------------AH 99
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
+ L +G+N ++YL +++ L L+L+ N + F + KL L + N L
Sbjct: 100 TIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159
Query: 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDK 381
++ F T+L L +S N+L ++++ SL +S N + L
Sbjct: 160 ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIP----SLFHANVSYNLLS------TLAI 209
Query: 382 LVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
+ ++ L + + + + L L L NNL D LL L +DLS N
Sbjct: 210 PIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDTAWLLNYPG--LVEVDLSYN 264
Query: 442 KFKGFDEKS 450
+ +
Sbjct: 265 ELEKIMYHP 273
Score = 87.3 bits (216), Expect = 2e-18
Identities = 64/448 (14%), Positives = 139/448 (31%), Gaps = 71/448 (15%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+ L++L LS N + ++ + + + ++ S
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLF----------HANVSYNLLS-------------- 205
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPN---------HLTIGPIFQQFQH 118
+A PI + ++D + +V N +LT +
Sbjct: 206 ----------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 255
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L E+ ++ + + I +HPF + L L +++N + + L+ + + L+ L L N +
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL 314
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP-EIFKDIQ 237
+ + L L L HN I L LK+L LS+ND + +F+++
Sbjct: 315 HVERNQP-QFDRLENLYLDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFRNVA 370
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
+ + + L + L + +E
Sbjct: 371 RPAVDDA------DQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEK-------- 416
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV---ASFD 354
++++ + ++ +T L +L+ N+L
Sbjct: 417 ---VQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQI 473
Query: 355 PIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNL 414
E L+ L + L + D L + + + FK+
Sbjct: 474 QQEQLLQGLHAE-IDTNLRRYRLPKDGLARSSDNLNKVFTHLK-ERQAFKLRETQARRTE 531
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
+ ++ +L ++ LD R K
Sbjct: 532 ADAKQKETEDLEQENIALEKQLDNKRAK 559
Score = 66.5 bits (162), Expect = 9e-12
Identities = 52/327 (15%), Positives = 114/327 (34%), Gaps = 25/327 (7%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F + Q LE L+I+N+ + A+ + +P+L+ L+L+HN++ + + N L+ LY
Sbjct: 273 PFVKMQRLERLYISNNRLVALNLY-GQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLY 330
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
LD N I ++ S L+ L+L+HN + R + + + D
Sbjct: 331 LDHNSIVTLKLSTH---HTLKNLTLSHNDWDCNSLRALFR--NVARPAVDDADQHCKIDY 385
Query: 232 IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291
+ C+ ++ ++ I + + Q + D + ++ L +
Sbjct: 386 QLEH-----GLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYI 440
Query: 292 LDGNHFPVILEKSFS---SQFKLQVLCLKRNRLA---KVTTTAFTNLTNLIELDISYNKL 345
P+ + ++ + +V L ++ + TNL + + L
Sbjct: 441 TQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGL 500
Query: 346 DRLEVASFDPIE--NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
R + K+ + ++ + L+ +IA D
Sbjct: 501 ARSSDNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDN----- 555
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSN 430
K + + Q + L + N
Sbjct: 556 KRAKQAELRQETSLKRQKVKQLEAKKN 582
Score = 37.2 bits (86), Expect = 0.011
Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 42/303 (13%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQ------------DTTMLFQVTIFLYLLHSSASVM 55
+L++L L +N IV + ++ LF+ + +
Sbjct: 323 FDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH-- 380
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQ 115
C +D + + + C+ D + Q T V++ V +
Sbjct: 381 ------CKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGR--------CSA 426
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRY-LNLTHNNITSLLDYNFKGMMNLQELYLDF 174
+ + + +I G P G L +N + L + + LQ L+ +
Sbjct: 427 TDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEI 486
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
+ +L R+ R S ++F L + ++ L E
Sbjct: 487 DT----------NLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRETQAR--RTEADA 534
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIY-LDLGYNQLKYLLADELEDLKKLETLLLD 293
+E + + + LE + A+L L ++K L A + +
Sbjct: 535 KQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPDTRRVSHHH 594
Query: 294 GNH 296
+H
Sbjct: 595 HHH 597
Score = 28.4 bits (63), Expect = 6.2
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
L +++ L+L+ I EI+ F L+
Sbjct: 70 LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLY 105
Score = 28.4 bits (63), Expect = 6.2
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFK 30
L+ L +DLSYN++ +I F
Sbjct: 249 WLLNYPGLVEVDLSYNELEKIMYHPFV 275
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG;
2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Length = 680
Score = 199 bits (509), Expect = 7e-57
Identities = 87/367 (23%), Positives = 146/367 (39%), Gaps = 22/367 (5%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N L F ++ L L + + I + +P L+ LNL HN ++ L D F
Sbjct: 35 NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFA 94
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
NL EL+L N I+ I ++ F+ +L L L+HN +S ++L L+ L LS
Sbjct: 95 FCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSN 154
Query: 223 NDIVEINPEIFKDIQ--ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE 280
N I + E LK + S ++ +P + + L L L QL L ++
Sbjct: 155 NKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEK 214
Query: 281 LED---LKKLETLLLDGNHFPVILEKSFSS--QFKLQVLCLKRNRLAKVTTTAFTNLTNL 335
L + L L + +F L +L L N L V +F L L
Sbjct: 215 LCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQL 274
Query: 336 IELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDK--------LVKLKA 387
+ YN + L S + N +R L + + + S L K L L+
Sbjct: 275 EYFFLEYNNIQHLFSHSLHGLFN-VRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333
Query: 388 LSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ----DIHNLLYQSNIKLTHLDLSRNKF 443
L++ D + I +F +L++L+LS + + ++ L L+L++NK
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Query: 444 KGFDEKS 450
+ +
Sbjct: 394 SKIESDA 400
Score = 195 bits (499), Expect = 2e-55
Identities = 87/359 (24%), Positives = 147/359 (40%), Gaps = 24/359 (6%)
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD- 173
++ +L L ++ + + +G F +P L Y L +NNI L ++ G+ N++ L L
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR 305
Query: 174 --------FNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND- 224
+ I F L L L++ N I + +F L LK L LS +
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365
Query: 225 -IVEINPEIFKDIQE--LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL-ADE 280
+ + E F + L + I +S L L LDLG N++ L E
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT--TTAFTNLTNLIEL 338
L+ + + L N + + SF+ LQ L L+R L V + F L NL L
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485
Query: 339 DISYNKLDRLEVASFDPIENSLRDLKISGNNIQ-------LSDVKNVLDKLVKLKALSIA 391
D+S N + + + +E L L + NN+ L L L L++
Sbjct: 486 DLSNNNIANINDDMLEGLEK-LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+ +IP +FK L+ ++L NNL + ++ + + L L+L +N ++K
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV 603
Score = 182 bits (463), Expect = 1e-50
Identities = 77/325 (23%), Positives = 130/325 (40%), Gaps = 16/325 (4%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
++ LNLTHN + L NF L L + FN I + + L L+VL+L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+S+L+ + F + L L L N I +I F + L T GL + L
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144
Query: 261 ADLIYLDLGYNQLKYLLADELEDLK--KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
+L L L N+++ L ++EL+ L+ L L N F + +L L L
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNN 204
Query: 319 NRLAKVTTTAFT---NLTNLIELDISYNKLDRLEVASFDPIEN-SLRDLKISGNNIQLSD 374
+L T T++ L +S ++L +F ++ +L L +S NN+
Sbjct: 205 VQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VV 263
Query: 375 VKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN---------NLQDIHNL 425
+ L +L+ + N + ++++LNL + +L I +
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323
Query: 426 LYQSNIKLTHLDLSRNKFKGFDEKS 450
+Q L HL++ N G
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNM 348
Score = 180 bits (459), Expect = 5e-50
Identities = 68/363 (18%), Positives = 154/363 (42%), Gaps = 23/363 (6%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK---GMMNLQELYLDF 174
L++L ++++ I F + L L L + + L +++ L L
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231
Query: 175 NKIESIPSSVF--MHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
+++ + ++ F + ++L +L L++N ++ + F L +L+ L YN+I +
Sbjct: 232 SQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 233 FKDIQELK---------TFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
+ ++ L I+ + L L +L++ N + + ++
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 284 LKKLETLLLDGNH--FPVILEKSFSS--QFKLQVLCLKRNRLAKVTTTAFTNLTNLIELD 339
L L+ L L + + ++F S L +L L +N+++K+ + AF+ L +L LD
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 340 ISYNKLDR-LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI 398
+ N++ + L + +EN + ++ +S N +N + L+ L + + ++
Sbjct: 412 LGLNEIGQELTGQEWRGLEN-IFEIYLSYNKYLQLT-RNSFALVPSLQRLMLRRVALKNV 469
Query: 399 PK--GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEP 456
F+ +L L+LS NN+ +I++ + + KL LDL N + +
Sbjct: 470 DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529
Query: 457 KNI 459
+
Sbjct: 530 YFL 532
Score = 179 bits (456), Expect = 2e-49
Identities = 72/309 (23%), Positives = 129/309 (41%), Gaps = 8/309 (2%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
S + +H +T + D N+ L L N++ +P++ F S L L + N I
Sbjct: 5 SHEVADCSHLKLTQVPDDLPT---NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
SKL P L KL LK L+L +N++ +++ + F L S ++ I +
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFS--SQFKLQVLCLKRN 319
+LI LDL +N L L+ L+ LLL N + + + L+ L L N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQ-LSDVK 376
++ + + F + L L ++ +L S+R+L +S + + S+
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 377 NVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHL 436
+ K L L ++ N + F P L++ L NN+Q + + + +L
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 437 DLSRNKFKG 445
+L R+ K
Sbjct: 302 NLKRSFTKQ 310
Score = 174 bits (444), Expect = 8e-48
Identities = 76/343 (22%), Positives = 132/343 (38%), Gaps = 38/343 (11%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK 176
+ + I+ + +P I F + L +LN+ N+I + F G++NL+ L L +
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF 364
Query: 177 IE--SIPSSVFMHL--SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
++ + F+ L S L +L+L N+ISK+ F L L+ LDL N+I +
Sbjct: 365 TSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ----- 419
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
+ + L ++ + L YN+ L + + L+ L+L
Sbjct: 420 ------------------ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461
Query: 293 DGNHFPVILE--KSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
+ F L +L L N +A + L L LD+ +N L RL
Sbjct: 462 RRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWK 521
Query: 351 ASFDPIE-------NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
+ + L L + N V L +LK + + N +P +F
Sbjct: 522 HANPGGPIYFLKGLSHLHILNLESNGFDEIP-VEVFKDLFELKIIDLGLNNLNTLPASVF 580
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSNIK-LTHLDLSRNKFKG 445
L+ LNL N + + ++ + LT LD+ N F
Sbjct: 581 NNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623
Score = 167 bits (425), Expect = 3e-45
Identities = 70/284 (24%), Positives = 122/284 (42%), Gaps = 17/284 (5%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSF--IPAIGFHPFWGVP--SLRYLNLTHNNITSLLD 158
N + +F +L+ L ++NSF + + F + L LNLT N I+ +
Sbjct: 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398
Query: 159 YNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKS 217
F + +L+ L L N+I + + L ++ + L++N+ +L F + L+
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQR 458
Query: 218 LDLSYNDI--VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
L L + V+ +P F+ ++ L + + NIN M L L LDL +N L
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLAR 518
Query: 276 LLAD--------ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
L L+ L L L L+ N F I + F F+L+++ L N L + +
Sbjct: 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578
Query: 328 AFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
F N +L L++ N + +E F P +L +L + N
Sbjct: 579 VFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 160 bits (407), Expect = 7e-43
Identities = 60/291 (20%), Positives = 121/291 (41%), Gaps = 10/291 (3%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + K+ +P + +++ VL+L HN++ +L F + S+L SLD+ +N I
Sbjct: 5 SHEVADCSHLKLTQVPDDLP---TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
++ PE+ + + LK + L ++ ++ +L L L N ++ + + K
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT--NLTNLIELDISYN 343
L TL L N + LQ L L N++ + + ++L +L++S N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 344 KLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV--LDKLVKLKALSIADMNYTDIPKG 401
++ F I L L ++ + S + + ++ LS+++ +
Sbjct: 182 QIKEFSPGCFHAIGR-LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 402 LFK--MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
F +L L+LS NNL + N + +L + L N + S
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Score = 66.2 bits (162), Expect = 1e-11
Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 1/103 (0%)
Query: 101 EENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
++ N + HL L++ ++ I F + L+ ++L NN+ +L
Sbjct: 520 WKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASV 579
Query: 161 FKGMMNLQELYLDFNKIESIPSSVFMH-LSDLRVLSLAHNRIS 202
F ++L+ L L N I S+ VF +L L + N
Sbjct: 580 FNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622
Score = 63.1 bits (154), Expect = 1e-10
Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 5/118 (4%)
Query: 333 TNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIAD 392
+ D S+ KL ++ D + ++ L ++ N ++ + +L +L +
Sbjct: 4 VSHEVADCSHLKLTQVP----DDLPTNITVLNLTHNQLRRLP-AANFTRYSQLTSLDVGF 58
Query: 393 MNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+ + L + P L+ LNL N L + + + LT L L N +
Sbjct: 59 NTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNP 116
Score = 30.4 bits (69), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQ 33
+S L L+L N EI E+FKD+
Sbjct: 535 LSHLHILNLESNGFDEIPVEVFKDLF 560
Score = 30.0 bits (68), Expect = 2.2
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
E + S LK L+LS N I E +P F I LF
Sbjct: 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLF 201
Score = 29.6 bits (67), Expect = 2.7
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 3 FTLIFMSKLKSLDLSYNDIVEINPEIFK 30
F + S L L+L+ N I +I + F
Sbjct: 375 FVSLAHSPLHILNLTKNKISKIESDAFS 402
Score = 29.6 bits (67), Expect = 3.2
Identities = 5/33 (15%), Positives = 15/33 (45%)
Query: 3 FTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDT 35
+ + +++L LS + + + F ++ T
Sbjct: 216 CLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2
related L recognition, receptor, innate immunity,
glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus
musculus} PDB: 3b2d_A* 3rg1_A*
Length = 606
Score = 189 bits (481), Expect = 2e-53
Identities = 85/444 (19%), Positives = 152/444 (34%), Gaps = 44/444 (9%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
KLK LD N I ++ E +Q T L L L + +
Sbjct: 152 TEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-----SLNLNGNDIAG------------- 193
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
I G D +N + G Q L +
Sbjct: 194 ---------------IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM 238
Query: 128 FIPAIGFHPFWGVP--SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
I F G+ S+ +NL + ++ F LQEL L + +PS
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSG-L 297
Query: 186 MHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI-VEINPEIFKDIQELKTFKC 244
+ LS L+ L L+ N+ L L L + N +E+ ++++ L+
Sbjct: 298 VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357
Query: 245 RSCGLENINPMMYSI--LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILE 302
+E + + L+ L L+L YN+ L + ++ +LE L L V
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417
Query: 303 KS-FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--S 359
+S F + L+VL L + L + F L L L++ N + + + ++
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
L L +S ++ D ++ L + + ++ T + LNL+ N++
Sbjct: 478 LEILVLSFCDLSSID-QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535
Query: 420 QDIHNLLYQSNIKLTHLDLSRNKF 443
I L + ++L +N
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPL 559
Score = 187 bits (476), Expect = 1e-52
Identities = 73/354 (20%), Positives = 132/354 (37%), Gaps = 12/354 (3%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N L + L+ L + I +I F P +L L L N+I+S+
Sbjct: 91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRV--LSLAHNRISKLAPRLFLKLSKLKSLDL 220
L+ L N I + L L+L N I+ + P F + +SL+
Sbjct: 151 PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-DSAVFQSLNF 209
Query: 221 SYNDIVEINPE--IFKDIQELKTFKCRSCGLENINPMMYSILAD--LIYLDLGYNQLKYL 276
+ + + IQ L E+I+P ++ L + + ++L + +
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269
Query: 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLI 336
++ L+ L L H + L+ L L N+ + + +N +L
Sbjct: 270 SSNTFHCFSGLQELDLTATHLSEL-PSGLVGLSTLKKLVLSANKFENLCQISASNFPSLT 328
Query: 337 ELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN-VLDKLVKLKALSIADMNY 395
L I N +LR+L +S ++I+ SD N L L L++L+++
Sbjct: 329 HLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNL-LYQSNIKLTHLDLSRNKFKGFDE 448
+ FK P L+ L+L+ L+ +Q+ L L+LS + E
Sbjct: 389 LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442
Score = 184 bits (469), Expect = 8e-52
Identities = 68/383 (17%), Positives = 135/383 (35%), Gaps = 39/383 (10%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
++ + LE L++ ++ I +I + L+ L+ +N I L +
Sbjct: 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS 174
Query: 163 GMMNLQELYLDF---------------------------NKIESIPSSVFMHLSDLRVLS 195
+ L L+ N + + L + +
Sbjct: 175 SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGT 234
Query: 196 LAHNRISKLAPRLF--LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN 253
++P +F L ++S++L + I+ F L+ + L +
Sbjct: 235 FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP 294
Query: 254 PMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV-ILEKSFSSQFKLQ 312
+ L+ L L L N+ + L + L L + GN + + + L+
Sbjct: 295 SGLVG-LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353
Query: 313 VLCLKRNRLAKV--TTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L L + + NL++L L++SYN+ L+ +F L L ++ +
Sbjct: 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ-LELLDLAFTRL 412
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY--- 427
++ D ++ L LK L+++ + LF P LQ LNL GN+ +
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472
Query: 428 QSNIKLTHLDLSRNKFKGFDEKS 450
Q+ +L L LS D+ +
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHA 495
Score = 184 bits (468), Expect = 1e-51
Identities = 70/343 (20%), Positives = 126/343 (36%), Gaps = 13/343 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F + +L L +T I I F L L LT N + + + G L+ L+
Sbjct: 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
I SI + L L L N IS + KLK LD N I ++ E
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172
Query: 233 FKDIQELKTFKCR--SCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE--DLKKLE 288
+Q+ + I P + L+ G Q ++ L+ ++ L
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLW 231
Query: 289 TLLLDGNHFPVILEKSFSSQFK--LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
+ I F + ++ + L+++ +++ F + L ELD++ L
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS 291
Query: 347 RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMN-YTDIPKGLFKM 405
L ++L+ L +S N + + L LSI ++ G +
Sbjct: 292 ELPSGLVGL--STLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNTKRLELGTGCLEN 348
Query: 406 NPHLQFLNLSGNNLQDIH--NLLYQSNIKLTHLDLSRNKFKGF 446
+L+ L+LS ++++ NL ++ L L+LS N+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Score = 165 bits (421), Expect = 4e-45
Identities = 57/311 (18%), Positives = 115/311 (36%), Gaps = 9/311 (2%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
+ N + + + + + L FN + +I ++ F L +L L L +I
Sbjct: 15 KTYNCENLGLNEIPGTLPN---STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71
Query: 204 LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADL 263
+ F +L +L L+ N ++ + + LK G+ +I+ + L
Sbjct: 72 IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131
Query: 264 IYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQV--LCLKRNRL 321
L LG N + + + +KL+ L N + ++ SS + L L N +
Sbjct: 132 ESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191
Query: 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE-NSLRDLKISGNNI-QLSDVKNVL 379
A + AF + L+ + + SL + +S
Sbjct: 192 AGIEPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
+ ++++++ + +I F LQ L+L+ +L ++ + L L L LS
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGL-VGLSTLKKLVLS 309
Query: 440 RNKFKGFDEKS 450
NKF+ + S
Sbjct: 310 ANKFENLCQIS 320
Score = 45.8 bits (109), Expect = 2e-05
Identities = 17/120 (14%), Positives = 42/120 (35%), Gaps = 23/120 (19%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
L+ F + + + ++++ + + + + YLNL N+I+ +L
Sbjct: 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544
Query: 163 GMMNLQELYLDFN--------------------KIESIPSSVFMHLSDLRVLSLAHNRIS 202
+ + + L N K+E ++ + LR + L+ +S
Sbjct: 545 ILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 190 bits (485), Expect = 6e-53
Identities = 93/450 (20%), Positives = 169/450 (37%), Gaps = 58/450 (12%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++ LKS+D S N I + + +Q T+ F L +S
Sbjct: 147 LNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF-----FSLAANS---------------- 185
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+ R ++ E+L + + N T ++ ++
Sbjct: 186 ----LYSRVSVDWGKCMNPFRNMVLEILDV-----SGNGWT----------VDITGNFSN 226
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM--MNLQELYLDFNKIESIPSSVF 185
I + +NI F G+ +++ L L + S+ S VF
Sbjct: 227 AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286
Query: 186 MHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCR 245
L DL+VL+LA+N+I+K+A F L L+ L+LSYN + E+ F + ++ +
Sbjct: 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346
Query: 246 SCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSF 305
+ I + L L LDL N L + + + + L GN + + +
Sbjct: 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKLVTLPKINL 401
Query: 306 SSQFKLQVLCLKRNRLAKVTTTAF-TNLTNLIELDISYNKLDRLEVASFDPIENSLRDLK 364
+ ++ L NRL + F + +L L ++ N+ SL L
Sbjct: 402 T----ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457
Query: 365 ISGNNIQLSDV----KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
+ N +QL+ +V + L L+ L + +P G+F L+ L+L+ N L
Sbjct: 458 LGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Query: 421 DIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+ + +N L LD+SRN+ +
Sbjct: 518 VLSHNDLPAN--LEILDISRNQLLAPNPDV 545
Score = 175 bits (446), Expect = 1e-47
Identities = 70/340 (20%), Positives = 133/340 (39%), Gaps = 26/340 (7%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLS 195
+ + L L+ N I ++ +F + LQ L L +I F +L +LR+L
Sbjct: 20 PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79
Query: 196 LAHNRISKLAPRLFLKLSKLKSLDLSYNDI--VEINPEIFKDIQELKTFKCRSCGLENIN 253
L ++I L P F L L L L + + + F++++ L + ++
Sbjct: 80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139
Query: 254 P-MMYSILADLIYLDLGYNQLKYLLADELEDL--KKLETLLLDGNHFPVILEKSFSSQFK 310
+ L L +D NQ+ + ELE L K L L N + +
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN 199
Query: 311 ------LQVLCLKRNRLAKVTTTAFTN------------LTNLIELDISYNKLDRLEVAS 352
L++L + N T F+N +++ ++ + + +
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259
Query: 353 FDPIEN-SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF 411
F + S+R L +S + + V + L LK L++A I F +LQ
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLN-SRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318
Query: 412 LNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
LNLS N L ++++ + K+ ++DL +N ++++
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF 358
Score = 171 bits (436), Expect = 2e-46
Identities = 75/362 (20%), Positives = 138/362 (38%), Gaps = 30/362 (8%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN-FKGMMNLQEL 170
+ Q E L ++ ++I + F + L+ L L +D F+ + NL+ L
Sbjct: 19 VPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK--LAPRLFLKLSKLKSLDLSYNDIVEI 228
L +KI + F L L L L +S L F L L LDLS N I +
Sbjct: 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL 138
Query: 229 NPE-IFKDIQELKTFKCRSCGLENINPMMYSILA--DLIYLDLGYNQLKYLLADELEDLK 285
F + LK+ S + + L L + L N L ++ +
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198
Query: 286 K------LETLLLDGNHFPVILEKSFSSQF------------KLQVLCLKRNRLAKVTTT 327
LE L + GN + V + +FS+ + + +
Sbjct: 199 NPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN 258
Query: 328 AFTNL--TNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI-QLSDVKNVLDKLVK 384
F L +++ LD+S+ + L F+ +++ L+ L ++ N I +++D L
Sbjct: 259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIAD--EAFYGLDN 315
Query: 385 LKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
L+ L+++ ++ F P + +++L N++ I + ++ KL LDL N
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 445 GF 446
Sbjct: 376 TI 377
Score = 165 bits (420), Expect = 3e-44
Identities = 96/474 (20%), Positives = 187/474 (39%), Gaps = 48/474 (10%)
Query: 4 TLIFMSKLKSLDLSYNDI-VEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCEC 62
+ F+ +L+ L+L + I+ E F+++ + +L + +Y LH A ++ E
Sbjct: 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102
Query: 63 ALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEEL 122
L G + V + G N + ++DL S+ L + P F + L+ +
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDL---------SKNQIRSLYLHPSFGKLNSLKSI 153
Query: 123 HITNSFIPAIGFHPFWG--VPSLRYLNLTHNNITSLLDYNFKGMMN------LQELYLDF 174
+++ I + H +L + +L N++ S + ++ MN L+ L +
Sbjct: 154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG 213
Query: 175 NKIESIPSSVFMH------------LSDLRVLSLAHNRISKLAPRLF--LKLSKLKSLDL 220
N + F + + + I F L S ++ LDL
Sbjct: 214 NGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDL 273
Query: 221 SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE 280
S+ + +N +F+ +++LK + I + L +L L+L YN L L +
Sbjct: 274 SHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
L K+ + L NH +I +++F KLQ L L+ N L T + ++ ++ +
Sbjct: 334 FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFL 388
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
S NKL L + + + +S N ++ D+ L ++ L+ L + ++
Sbjct: 389 SGNKLVTLPKINL-----TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSG 443
Query: 401 -GLFKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKFKGFDE 448
NP L+ L L N LQ + +++ L L L+ N
Sbjct: 444 DQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP 497
Score = 136 bits (345), Expect = 2e-34
Identities = 59/305 (19%), Positives = 108/305 (35%), Gaps = 28/305 (9%)
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI-VEI 228
+ F + +P L+ L L+ N I + F L +L+ L+L + I
Sbjct: 9 AFYRFCNLTQVPQ----VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI 64
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK--YLLADELEDLKK 286
+ E F+++ L+ S + ++P + L L L L + L L +LK
Sbjct: 65 DKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124
Query: 287 LETLLLDGNHFPVI-LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLT--NLIELDISYN 343
L L L N + L SF L+ + N++ V L L ++ N
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184
Query: 344 KLDRLEVASFDPIEN-----SLRDLKISGNNIQLSDVKN-----------VLDKLVKLKA 387
L + N L L +SGN + N L +
Sbjct: 185 SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244
Query: 388 LSIADMNYTDIPKGLFKM--NPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445
N D + F ++ L+LS + +++ ++++ L L+L+ NK
Sbjct: 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK 304
Query: 446 FDEKS 450
+++
Sbjct: 305 IADEA 309
Score = 92.6 bits (230), Expect = 5e-20
Identities = 59/245 (24%), Positives = 99/245 (40%), Gaps = 52/245 (21%)
Query: 1 MEFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMC 60
+ T F+ KL++LDL N + I H S+ ++
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALTTI------------------------HFIPSIPDIFLS 389
Query: 61 ECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLE 120
L + +++L ++ + SE +L I + HL+
Sbjct: 390 GNKLVT------------------LPKINLTANLIHL--SENRLENLDILYFLLRVPHLQ 429
Query: 121 ELHITNSFIPAIGFHP-FWGVPSLRYLNLTHNNI-----TSLLDYNFKGMMNLQELYLDF 174
L + + + PSL L L N + T L F+G+ +LQ LYL+
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
N + S+P VF HL+ LR LSL NR++ L+ + L+ LD+S N ++ NP++F
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFV 547
Query: 235 DIQEL 239
+ L
Sbjct: 548 SLSVL 552
Score = 35.6 bits (82), Expect = 0.039
Identities = 18/112 (16%), Positives = 39/112 (34%), Gaps = 7/112 (6%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
+F L L + ++ + + + +L L+++ N + + F +L L
Sbjct: 499 VFSHLTALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFV---SLSVLD 553
Query: 172 LDFNK-IESIPSSVFMHLSDLRVLSLAHNRIS-KLAPRLFLKLSKLKSLDLS 221
+ NK I S F++ + +++A L SL
Sbjct: 554 ITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE 605
Score = 28.6 bits (64), Expect = 6.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTML 38
++ + L LS+N I + F ++ +L
Sbjct: 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein;
HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A*
1xcd_A*
Length = 330
Score = 177 bits (452), Expect = 8e-52
Identities = 70/312 (22%), Positives = 124/312 (39%), Gaps = 43/312 (13%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P L+L +N IT + D +FK + NL L L NKI I F L L L L+ N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+ +L ++ L+ L + N+I ++ +F L
Sbjct: 112 LKELPEKMP---KTLQELRVHENEITKVRKSVFNG------------------------L 144
Query: 261 ADLIYLDLGYNQLK--YLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
+I ++LG N LK + + +KKL + + + I + S L L L
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDG 201
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378
N++ KV + L NL +L +S+N + ++ S + LR+L ++ N +L V
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH-LRELHLNNN--KLVKVPGG 258
Query: 379 LDKLVKLKALSIADMNYTDIPKGLF------KMNPHLQFLNLSGNNLQ--DIHNLLYQSN 430
L ++ + + + N + I F ++L N +Q +I ++
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318
Query: 431 IKLTHLDLSRNK 442
+ L K
Sbjct: 319 YVRAAVQLGNYK 330
Score = 173 bits (440), Expect = 5e-50
Identities = 59/309 (19%), Positives = 113/309 (36%), Gaps = 37/309 (11%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
L + N+ I I F + +L L L +N I+ + F ++ L+ LYL N
Sbjct: 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI--VEINPEIF 233
+++ +P + L+ L + N I+K+ +F L+++ ++L N + I F
Sbjct: 111 QLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 234 KDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293
+ +++L + + I + L L L N++ + A L+ L L L L
Sbjct: 168 QGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
N + S ++ L+ L L N+L KV + + + + N + + F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 354 DPIE-----NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408
P S + + N +Q Y +I F+
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQ-----------------------YWEIQPSTFRCVYV 320
Query: 409 LQFLNLSGN 417
+ L
Sbjct: 321 RAAVQLGNY 329
Score = 115 bits (290), Expect = 7e-29
Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 11/206 (5%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L+ +C GLE + P + D LDL N++ + + ++LK L TL+L N
Sbjct: 32 HLRVVQCSDLGLEKV-PK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 88
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
I +F+ KL+ L L +N+L ++ L EL + N++ ++ + F+ +
Sbjct: 89 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFNGLN 145
Query: 358 NSLRDLKISGNNIQLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG 416
+ +++ N ++ S + + KL + IAD N T IP+GL P L L+L G
Sbjct: 146 Q-MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDG 201
Query: 417 NNLQDIHNLLYQSNIKLTHLDLSRNK 442
N + + + L L LS N
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNS 227
Score = 90.8 bits (226), Expect = 3e-20
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ +L +L ++ + I A+ P LR L+L +N + + +Q +YL
Sbjct: 212 LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYL 270
Query: 173 DFNKIESIPSSVF------MHLSDLRVLSLAHNRI--SKLAPRLFLKLSKLKSLDLSYN 223
N I +I S+ F + +SL N + ++ P F + ++ L
Sbjct: 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
Score = 84.7 bits (210), Expect = 3e-18
Identities = 41/250 (16%), Positives = 86/250 (34%), Gaps = 64/250 (25%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
L+ L + N+I ++ +F + ++ L
Sbjct: 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVE------------------------LGT-- 154
Query: 69 RYEIVCRRGDMANPIPIGQMDLGT-------EVLKIVPSEENPNHLTIGP--IFQQFQHL 119
NP+ ++ G ++I ++T P + L
Sbjct: 155 ------------NPLKSSGIENGAFQGMKKLSYIRI-----ADTNITTIPQGLPPSLTEL 197
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
H+ + I + G+ +L L L+ N+I+++ + + +L+EL+L+ NK+
Sbjct: 198 ---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRLFL------KLSKLKSLDLSYNDI--VEINPE 231
+P ++V+ L +N IS + F K + + L N + EI P
Sbjct: 255 VPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
Query: 232 IFKDIQELKT 241
F+ +
Sbjct: 314 TFRCVYVRAA 323
Score = 67.7 bits (166), Expect = 1e-12
Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 29/134 (21%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
+L L+ N++ ++ F NL NL L + NK+ ++ +F P+ L L +S N +
Sbjct: 54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK-LERLYLSKNQL 112
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
++P+ + LQ L + N + + ++
Sbjct: 113 -------------------------KELPEKMP---KTLQELRVHENEITKVRKSVFNGL 144
Query: 431 IKLTHLDLSRNKFK 444
++ ++L N K
Sbjct: 145 NQMIVVELGTNPLK 158
Score = 44.6 bits (106), Expect = 4e-05
Identities = 28/201 (13%), Positives = 56/201 (27%), Gaps = 71/201 (35%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYL-------LHSSASVMCPYMCE 61
L L L N I +++ K L + L L + + + P++ E
Sbjct: 192 PSLTELHLDGNKITKVDAASLKG------LNNLA-KLGLSFNSISAVDNGSLANTPHLRE 244
Query: 62 CALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEE 121
L++ N L VP ++++
Sbjct: 245 LHLNN--------------NK------------LVKVPGG-----------LADHKYIQV 267
Query: 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE--S 179
+++ N+ I AIG + F + + L N ++
Sbjct: 268 VYLHNNNISAIGSNDFCPPGY------------------NTKKASYSGVSLFSNPVQYWE 309
Query: 180 IPSSVFMHLSDLRVLSLAHNR 200
I S F + + L + +
Sbjct: 310 IQPSTFRCVYVRAAVQLGNYK 330
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 175 bits (445), Expect = 1e-49
Identities = 71/232 (30%), Positives = 109/232 (46%), Gaps = 4/232 (1%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ R LNL N I + +FK + +L+ L L N I +I F L++L L L NR
Sbjct: 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSC-GLENINPMMYSI 259
++ + F+ LSKLK L L N I I F I L+ L I+ +
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG 183
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L++L YL+L L+ + L L KL+ L L GNH I SF LQ L + ++
Sbjct: 184 LSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
++ + AF NL +L+E+++++N L L F P+ L + + N
Sbjct: 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLH-HLERIHLHHNPWN 292
Score = 166 bits (422), Expect = 2e-46
Identities = 76/309 (24%), Positives = 131/309 (42%), Gaps = 39/309 (12%)
Query: 38 LFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKI 97
L V + + + ++ CP +C C +++C R ++ +P G + T +L +
Sbjct: 17 LLSVLLMGCVAETGSAQTCPSVCSC---SNQFSKVICVRKNLRE-VPDG-ISTNTRLLNL 71
Query: 98 VPSEENPNHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITS 155
+ N + I F+ +HLE L ++ + I I F G+ +L L L N +T+
Sbjct: 72 -----HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT 126
Query: 156 LLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH-NRISKLAPRLFLKLSK 214
+ + F + L+EL+L N IESIPS F + LR L L R+S ++ F LS
Sbjct: 127 IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSN 186
Query: 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
L+ L+L+ ++ EI + +L LDL N L
Sbjct: 187 LRYLNLAMCNLREIPN--LTPLIKLDE------------------------LDLSGNHLS 220
Query: 275 YLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTN 334
+ + L L+ L + + VI +F + L + L N L + FT L +
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH 280
Query: 335 LIELDISYN 343
L + + +N
Sbjct: 281 LERIHLHHN 289
Score = 126 bits (317), Expect = 7e-32
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 8/212 (3%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
+ C L + P I + L+L NQ++ + + + L+ LE L L NH
Sbjct: 44 QFSKVICVRKNLREV-PD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
I +F+ L L L NRL + AF L+ L EL + N ++ + +F+ I
Sbjct: 101 RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP 160
Query: 358 NSLRDLKISGNNIQLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG 416
+ LR L + +LS + + + L L+ L++A N +IP L L+LSG
Sbjct: 161 S-LRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSG 216
Query: 417 NNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
N+L I +Q + L L + +++ + +
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIER 248
Score = 29.7 bits (67), Expect = 2.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
L + KL LDLS N + I P F+ + L+
Sbjct: 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Score = 29.3 bits (66), Expect = 3.4
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+SKLK L L N I I F
Sbjct: 135 LSKLKELWLRNNPIESIPSYAFNR 158
Score = 28.6 bits (64), Expect = 4.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
++ L +L+L N + I F
Sbjct: 111 LANLNTLELFDNRLTTIPNGAFVY 134
Score = 27.8 bits (62), Expect = 8.7
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L+ L LS N I I F
Sbjct: 87 LRHLEILQLSRNHIRTIEIGAFNG 110
Score = 27.8 bits (62), Expect = 9.7
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L+ L + + I I F +
Sbjct: 230 LMHLQKLWMIQSQIQVIERNAFDN 253
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 175 bits (445), Expect = 1e-49
Identities = 70/257 (27%), Positives = 109/257 (42%), Gaps = 28/257 (10%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ L++ + I I F + L L L N+I + F G+ +L L L N
Sbjct: 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS-YNDIVEINPEIFK 234
+ IPS F +LS LR L L +N I + F ++ L LDL + I+ F+
Sbjct: 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFE 193
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
L +L YL+LG +K + L L LE L + G
Sbjct: 194 G------------------------LFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSG 227
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
NHFP I SF L+ L + ++++ + AF L +L+EL++++N L L F
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287
Query: 355 PIENSLRDLKISGNNIQ 371
P+ L +L + N
Sbjct: 288 PLRY-LVELHLHHNPWN 303
Score = 167 bits (424), Expect = 1e-46
Identities = 63/301 (20%), Positives = 104/301 (34%), Gaps = 54/301 (17%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ T ++ + N + L L N I+ I + F HL L VL L N
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPS---NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I ++ F L+ L +L+L N + I F+ L
Sbjct: 111 IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY------------------------L 146
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+ L L L N ++ + + + L L L +
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGEL-----------------------KK 183
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380
L ++ AF L NL L++ + + + P+ L +L++SGN+
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVG-LEELEMSGNHFP-EIRPGSFH 239
Query: 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSR 440
L LK L + + + I + F L LNL+ NNL + + L+ L L L
Sbjct: 240 GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299
Query: 441 N 441
N
Sbjct: 300 N 300
Score = 162 bits (411), Expect = 8e-45
Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 39/312 (12%)
Query: 35 TTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEV 94
T ++ + + S+ CP +C C ++VC R ++ +P G + T
Sbjct: 25 TAQVWILCAAIAAAASAGPQNCPSVCSC---SNQFSKVVCTRRGLSE-VPQG-IPSNTRY 79
Query: 95 LKIVPSEENPNHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN 152
L + N++ + F+ HLE L + + I I F G+ SL L L N
Sbjct: 80 LNL-----MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134
Query: 153 ITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH-NRISKLAPRLFLK 211
+T + F+ + L+EL+L N IESIPS F + L L L ++ ++ F
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 212 LSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
L LK L+L +I ++ L L L++ N
Sbjct: 195 LFNLKYLNLGMCNIKDMPN--LTP------------------------LVGLEELEMSGN 228
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTN 331
+ L L+ L + + +I +F L L L N L+ + FT
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288
Query: 332 LTNLIELDISYN 343
L L+EL + +N
Sbjct: 289 LRYLVELHLHHN 300
Score = 125 bits (316), Expect = 1e-31
Identities = 50/213 (23%), Positives = 88/213 (41%), Gaps = 8/213 (3%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
+ C GL + P I ++ YL+L N ++ + AD L LE L L N
Sbjct: 55 QFSKVVCTRRGLSEV-PQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI 111
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
I +F+ L L L N L + + AF L+ L EL + N ++ + +F+ +
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP 171
Query: 358 NSLRDLKISGNNIQLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG 416
+ L L + +L + + + L LK L++ N D+P L+ L +SG
Sbjct: 172 S-LMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSG 227
Query: 417 NNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEK 449
N+ +I + L L + ++ +
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERN 260
Score = 29.7 bits (67), Expect = 2.5
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
++ L +L+L N + I F+
Sbjct: 122 LASLNTLELFDNWLTVIPSGAFEY 145
Score = 29.3 bits (66), Expect = 2.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+SKL+ L L N I I F
Sbjct: 146 LSKLRELWLRNNPIESIPSYAFNR 169
Score = 29.3 bits (66), Expect = 3.0
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKD 31
L + L+ L++S N EI P F
Sbjct: 213 NLTPLVGLEELEMSGNHFPEIRPGSFHG 240
Score = 28.2 bits (63), Expect = 7.2
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+S LK L + + + I F
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDG 264
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2,
lipopeptide, innate immunity, glycoprotein, immune RES
inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Length = 353
Score = 172 bits (437), Expect = 2e-49
Identities = 61/304 (20%), Positives = 107/304 (35%), Gaps = 43/304 (14%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+++ L+L++N IT + + + + +NLQ L L N I +I F L L L L++N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+S L+ F LS L L+L N + +S L
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL-----------------------FSHL 148
Query: 261 ADLIYLDLGYN-QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L L +G + + L LE L +D + KS S + L L
Sbjct: 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
+ + +++ L++ LD + N L
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG------------------ETNSL 250
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
K + + I D + + K L ++ L L S N L+ + + ++ L + L
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQI-SGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
Query: 440 RNKF 443
N +
Sbjct: 310 TNPW 313
Score = 138 bits (349), Expect = 7e-37
Identities = 54/254 (21%), Positives = 108/254 (42%), Gaps = 13/254 (5%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N +T Q+ +L+ L +T++ I I F + SL +L+L++N +++L FK
Sbjct: 62 NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFK 121
Query: 163 GMMNLQELYLDFNKIESI-PSSVFMHLSDLRVLSLAHN-RISKLAPRLFLKLSKLKSLDL 220
+ +L L L N +++ +S+F HL+ L++L + + +K+ + F L+ L+ L++
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 221 SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY----- 275
+D+ P+ K IQ + + + + + + L+L L
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241
Query: 276 ---LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNL 332
+ L + + + K + L L RN+L V F L
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300
Query: 333 TNLIELDISYNKLD 346
T+L ++ + N D
Sbjct: 301 TSLQKIWLHTNPWD 314
Score = 122 bits (307), Expect = 5e-31
Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 5/204 (2%)
Query: 244 CRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEK 303
S L +I P + + LDL N++ Y+ +L+ L+ L+L N I E
Sbjct: 38 GSSGSLNSI-PS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED 94
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDL 363
SFSS L+ L L N L+ ++++ F L++L L++ N L S L+ L
Sbjct: 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154
Query: 364 KISGNNIQLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422
++ GN + + + L L+ L I + K ++ L L +
Sbjct: 155 RV-GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 423 HNLLYQSNIKLTHLDLSRNKFKGF 446
+ + L+L F
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTF 237
Score = 76.3 bits (188), Expect = 2e-15
Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 51/245 (20%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
L+ LDLSYN + ++ FK L +T L LL
Sbjct: 100 GSLEHLDLSYNYLSNLSSSWFKP------LSSLTF-LNLLG------------------- 133
Query: 69 RYEIVCRRGDMANPI---PIGQMDLGTEVLKIVPSEENPNHLTIGP-IFQQFQHLEELHI 124
NP + L+I+ I F LEEL I
Sbjct: 134 ------------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181
Query: 125 TNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD--------FNK 176
S + + + ++ +L L LL+ +++ L L F++
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE 241
Query: 177 IESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDI 236
+ + ++ + R + + + ++ +L ++S L L+ S N + + IF +
Sbjct: 242 LSTGETNSLIKKFTFRNVKITDESLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRL 300
Query: 237 QELKT 241
L+
Sbjct: 301 TSLQK 305
Score = 66.7 bits (163), Expect = 4e-12
Identities = 26/223 (11%), Positives = 68/223 (30%), Gaps = 43/223 (19%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
S L L+L N + F L +L + +
Sbjct: 124 SSLTFLNLLGNPYKTLGETSL---------FSHLTKLQILR--------------VGNMD 160
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSF 128
+ + +R D A + ++++ L+ + + Q++ L +
Sbjct: 161 TFTKI-QRKDFAGLTFLEELEIDASDLQSYEPK----------SLKSIQNVSHLILHMKQ 209
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNN--------ITSLLDYNFKGMMNLQELYLDFNKIESI 180
+ S+ L L + +++ + + + + + +
Sbjct: 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV 269
Query: 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
+ +S L L + N++ + +F +L+ L+ + L N
Sbjct: 270 M-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
Score = 44.3 bits (105), Expect = 5e-05
Identities = 25/168 (14%), Positives = 55/168 (32%), Gaps = 29/168 (17%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++ L+ L++ +D+ P+ K IQ+ + L L ++
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVS-------HLILHMKQHILLLE---------- 215
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+ + ++L L E T + + IT+
Sbjct: 216 ---------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNS--LIKKFTFRNVKITDE 264
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ + + L L + N + S+ D F + +LQ+++L N
Sbjct: 265 SLFQV-MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition,
OMGP, MAG, NOGO- signal transduction, neuronal
regeneration, ligand binding; HET: NDG MAN NAG BMA;
1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Length = 285
Score = 166 bits (423), Expect = 4e-48
Identities = 63/232 (27%), Positives = 101/232 (43%), Gaps = 26/232 (11%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN- 199
+ + + L N I+ + +F+ NL L+L N + I ++ F L+ L L L+ N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
++ + P F L +L +L L + E+ P +F+
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG------------------------ 127
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
LA L YL L N L+ L D DL L L L GN + E++F L L L +N
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
R+A V AF +L L+ L + N L L + P+ +L+ L+++ N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR-ALQYLRLNDNPWV 238
Score = 133 bits (338), Expect = 6e-36
Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 48/261 (18%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIG------QMDLGTEVLKIVPSEE------- 102
CP C C + + C + + +P+G ++ L + VP+
Sbjct: 2 CPGACVC--YNEPKVTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58
Query: 103 -----NPNHLT-IGP-IFQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNIT 154
+ N L I F LE+L ++ N+ + ++ F G+ L L+L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 155 SLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
L F+G+ LQ LYL N ++++P F L +L L L NRIS + R F L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
L L L N + ++P F+D+ L T L L N L
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMT------------------------LYLFANNLS 214
Query: 275 YLLADELEDLKKLETLLLDGN 295
L + L L+ L+ L L+ N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235
Score = 120 bits (304), Expect = 3e-31
Identities = 48/212 (22%), Positives = 77/212 (36%), Gaps = 8/212 (3%)
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
+ T C GL+ + I A + L N++ ++ A + L L L
Sbjct: 9 YNEPKVTTSCPQQGLQAVPV---GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHS 65
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRN-RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
N I +F+ L+ L L N +L V F L L L + L L F
Sbjct: 66 NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF 125
Query: 354 DPIENSLRDLKISGNNIQ-LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFL 412
+ L+ L + N +Q L D + L L L + + +P+ F+ L L
Sbjct: 126 RGLAA-LQYLYLQDNALQALPD--DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
L N + +H ++ +L L L N
Sbjct: 183 LLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214
Score = 28.0 bits (63), Expect = 6.7
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKD 31
T + +L +L L + E+ P +F+
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRG 127
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 166 bits (423), Expect = 8e-48
Identities = 52/235 (22%), Positives = 94/235 (40%), Gaps = 5/235 (2%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE--SIPSSVFMHLSDLRVLSLAH 198
S L L N + SL F + L +L L N + S + L+ L L+
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE-IFKDIQELKTFKCRSCGLENINPMMY 257
N + + FL L +L+ LD ++++ +++ +F ++ L ++
Sbjct: 88 NGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 258 SILADLIYLDLGYNQ-LKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
+ L+ L L + N + L D +L+ L L L + +F+S LQVL +
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
N + T + L +L LD S N + + +SL L ++ N+
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 138 bits (349), Expect = 3e-37
Identities = 61/281 (21%), Positives = 104/281 (37%), Gaps = 54/281 (19%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ E+ + + S+P+ + S L L N++ L +F KL++L L LS N +
Sbjct: 8 SGTEIRCNSKGLTSVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGL 64
Query: 226 --VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
+ L YLDL +N + + ++
Sbjct: 65 SFKGCCSQSDFG------------------------TTSLKYLDLSFNGVITMSSN-FLG 99
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
L++LE L ++ + E S F +L NLI LDIS+
Sbjct: 100 LEQLEHLDFQHSNLKQMSEFS-----------------------VFLSLRNLIYLDISHT 136
Query: 344 KLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
F+ + + L LK++GN+ Q + + ++ +L L L ++ + F
Sbjct: 137 HTRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
LQ LN+S NN + Y+ L LD S N
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236
Score = 111 bits (279), Expect = 2e-27
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 4/136 (2%)
Query: 105 NHLTI---GPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN-ITSLLDYN 160
++L +F ++L L I+++ F G+ SL L + N+ + L
Sbjct: 111 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170
Query: 161 FKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDL 220
F + NL L L ++E + + F LS L+VL+++HN L + L+ L+ LD
Sbjct: 171 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 230
Query: 221 SYNDIVEINPEIFKDI 236
S N I+ + +
Sbjct: 231 SLNHIMTSKKQELQHF 246
Score = 28.4 bits (64), Expect = 4.8
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKD 31
+ L LDLS + +++P F
Sbjct: 170 IFTELRNLTFLDLSQCQLEQLSPTAFNS 197
Score = 28.1 bits (63), Expect = 6.7
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L LD+S+ IF
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNG 148
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto;
TLR2, PAM3CSK4, lipopeptide, innate immunity,
cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A
{Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A*
2z7x_A*
Length = 549
Score = 172 bits (437), Expect = 9e-48
Identities = 60/322 (18%), Positives = 120/322 (37%), Gaps = 18/322 (5%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+++ L+L+ N IT + + + NLQ L L ++I +I F L L L L+ N
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEI-NPEIFKDIQELKTFK-CRSCGLENINPMMYS 258
+S L+ F LS LK L+L N + +F ++ L+T + I + ++
Sbjct: 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
L L L++ L+ + L+ ++ + L L + +LE ++ L L+
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI----------------ENSLRD 362
LA+ + + + L SF+ + + +L
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265
Query: 363 LKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422
L + + + V ++ L I ++ + ++ + + + + +
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325
Query: 423 HNLLYQSNIKLTHLDLSRNKFK 444
Q L LDLS N
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMV 347
Score = 170 bits (433), Expect = 4e-47
Identities = 70/352 (19%), Positives = 149/352 (42%), Gaps = 13/352 (3%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ +L+ L + +S I I F+ + SL +L+L+ N+++SL F + +L+ L L
Sbjct: 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105
Query: 173 DFNKIESIP-SSVFMHLSDLRVLSLAH-NRISKLAPRLFLKLSKLKSLDLSYNDIVEINP 230
N +++ +S+F +L++L+ L + + S++ F L+ L L++ +
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165
Query: 231 EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETL 290
+ K I+++ + + IL+ + YL+L L L + +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225
Query: 291 LLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
V+ ++SF+ KL L+ + + F + T D + ++ D +
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSE 279
Query: 351 ASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQ 410
++R L I + D+ V L K+K +++ + +P + L+
Sbjct: 280 LGKVE-TVTIRRLHIPQFYLF-YDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLE 337
Query: 411 FLNLSGNNLQDIH---NLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNI 459
FL+LS N + + + + + L L LS+N + + I+ KN+
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389
Score = 157 bits (400), Expect = 1e-42
Identities = 58/348 (16%), Positives = 130/348 (37%), Gaps = 14/348 (4%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSF-IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKG 163
L + +F +L+ L I N I F G+ SL L + ++ + + K
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170
Query: 164 MMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
+ ++ L L ++ + LS +R L L +++ +
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230
Query: 224 DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
+ E F ++ +L + ++ + + D ++ + +
Sbjct: 231 RGSVLTDESFNELLKL------LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
+ L + + L +S K++ + ++ +++ V + +L +L LD+S N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344
Query: 344 KLDRLEVASFDPIEN--SLRDLKISGNNIQ-LSDVKNVLDKLVKLKALSIADMNYTDIPK 400
+ + + SL+ L +S N+++ + +L L L +L I+ + +P
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
++FLNLS ++ + + Q+ L LD+S N F
Sbjct: 405 SCQWP-EKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNLDSFSL 448
Score = 152 bits (385), Expect = 2e-40
Identities = 55/322 (17%), Positives = 112/322 (34%), Gaps = 21/322 (6%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ + + TS+ ++ L L FNKI I ++L+VL L +R
Sbjct: 5 DASGVCDGRSRSFTSIPSGLTA---AMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENI-NPMMYSI 259
I+ + F L L+ LDLS N + ++ F + LK + + ++
Sbjct: 62 INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121
Query: 260 LADLIYLDLG-YNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
L +L L +G + + L L L + +S S + L L
Sbjct: 122 LTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHL 181
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVK-- 376
+ A + L+++ L++ L R + + E S K++ L+D
Sbjct: 182 SESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241
Query: 377 ---NVLDKLVKLKALSIADMNYTDI-----------PKGLFKMNPHLQFLNLSGNNLQDI 422
+L +++L + D + + ++ L++ L
Sbjct: 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301
Query: 423 HNLLYQSNIKLTHLDLSRNKFK 444
+ +Y K+ + + +K
Sbjct: 302 LSTVYSLLEKVKRITVENSKVF 323
Score = 143 bits (363), Expect = 2e-37
Identities = 71/422 (16%), Positives = 123/422 (29%), Gaps = 67/422 (15%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTML-----FQVTIFLYLLHSSASVMCPYMCEC 62
++ L L++ + + K I+D L + +SV + +
Sbjct: 147 LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206
Query: 63 ALDD-RGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEE 121
L + V + L E + F
Sbjct: 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266
Query: 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIP 181
S + ++R L++ + L + + ++ + ++ +K+ +P
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326
Query: 182 SSVFMHLSDLRVLSLAHNRISKLA---PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE 238
S HL L L L+ N + + L++L LS N + +
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE----- 381
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298
L +L LD+ N + D + +K+ L L
Sbjct: 382 --ILLT---------------LKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR 423
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN 358
V+ + L+VL + N L L L EL IS NKL L AS P
Sbjct: 424 VVKTCIPQT---LEVLDVSNNNLDSF----SLFLPRLQELYISRNKLKTLPDASLFP--- 473
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
L +KIS N + +P G+F LQ + L N
Sbjct: 474 VLLVMKISRNQL-------------------------KSVPDGIFDRLTSLQKIWLHTNP 508
Query: 419 LQ 420
Sbjct: 509 WD 510
Score = 134 bits (338), Expect = 4e-34
Identities = 84/459 (18%), Positives = 156/459 (33%), Gaps = 51/459 (11%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF-QVTIFLYLLHSSASVMCPYMCEC 62
+ L+ LDLS N + ++ F + L + L +S +
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 63 ALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEEL 122
+ + + + RR D A + ++++ L+ S+ + + + L
Sbjct: 129 RIGNVETFSEI-RRIDFAGLTSLNELEIKALSLRNYQSQ----------SLKSIRDIHHL 177
Query: 123 HITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS 182
+ S + + S+RYL L N+ + + +
Sbjct: 178 TLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237
Query: 183 SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
F L L R L+LS+++ D + N + + NP + EL
Sbjct: 238 ESFNELLKL--------------LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKV 283
Query: 243 KC--------RSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
+ L +YS+L + + + +++ + + LK LE L L
Sbjct: 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSE 343
Query: 295 NHF---PVILEKSFSSQFKLQVLCLKRNRLAKVTTTA--FTNLTNLIELDISYNKLDRLE 349
N + + LQ L L +N L + T L NL LDIS N +
Sbjct: 344 NLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMP 403
Query: 350 VASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHL 409
+ P +R L +S I++ L+ L +++ N L P L
Sbjct: 404 DSCQWP--EKMRFLNLSSTGIRVVK----TCIPQTLEVLDVSNNNLDSFSLFL----PRL 453
Query: 410 QFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
Q L +S N L+ + + L + +SRN+ K +
Sbjct: 454 QELYISRNKLKTLPDASLFPV--LLVMKISRNQLKSVPD 490
Score = 127 bits (320), Expect = 1e-31
Identities = 52/298 (17%), Positives = 107/298 (35%), Gaps = 21/298 (7%)
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
SIPS + + ++ L L+ N+I+ + + L+ L L + I I +
Sbjct: 12 GRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68
Query: 232 IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLAD-ELEDLKKLETL 290
F + L+ L +++ + L+ L YL+L N + L +L L+TL
Sbjct: 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
Query: 291 LLDG-NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+ F I F+ L L +K L + + ++ ++ L + ++ L
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188
Query: 350 VASFDPIEN----SLRDLKISGNNIQLSDVKNVLDKLVKL--KALSIADMNYTDIPK--G 401
D + + LRD ++ V V + KL + + D ++ ++ K
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLR 248
Query: 402 LFKMNPHLQFLNLSGNNLQDIHNLLYQS--------NIKLTHLDLSRNKFKGFDEKSY 451
++F + + N L D + + + L + + Y
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306
Score = 41.2 bits (97), Expect = 6e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 388 LSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447
++T IP GL ++ L+LS N + I + ++ L L L ++ +
Sbjct: 10 CDGRSRSFTSIPSGLT---AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66
Query: 448 EKS 450
+
Sbjct: 67 GDA 69
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein,
signaling; HET: NAG FLC; 3.40A {Bos taurus}
Length = 332
Score = 165 bits (421), Expect = 2e-47
Identities = 64/331 (19%), Positives = 114/331 (34%), Gaps = 56/331 (16%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
L + N+ I + F G+ L L L +N I+ + + F + LQ+LY+ N
Sbjct: 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI--VEINPEIF 233
+ IP ++ S L L + NRI K+ +F L + +++ N + P F
Sbjct: 113 HLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169
Query: 234 KDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293
++ L YL + +L + D + L L LD
Sbjct: 170 DGLK-------------------------LNYLRISEAKLTGIPKD---LPETLNELHLD 201
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
N I + KL L L N++ + + + L L EL + NKL R+
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLP 261
Query: 354 DPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLN 413
D L+ + + NNI K+ + G + ++
Sbjct: 262 DL--KLLQVVYLHTNNIT------------KVGVNDFCPV-------GFGVKRAYYNGIS 300
Query: 414 LSGNNLQ--DIHNLLYQSNIKLTHLDLSRNK 442
L N + ++ ++ + K
Sbjct: 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
Score = 152 bits (387), Expect = 2e-42
Identities = 73/382 (19%), Positives = 134/382 (35%), Gaps = 76/382 (19%)
Query: 45 LYLLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENP 104
L L + S MCP+ C C L + C + +P + T +L +
Sbjct: 16 LDSLPPTYSAMCPFGCHCHLR-----VVQCSDLGLKA-VPKE-ISPDTTLLDL-----QN 63
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N ++ F+ QHL L + N+ I I F + L+ L ++ N++ +
Sbjct: 64 NDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS 123
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI--SKLAPRLFLKLSKLKSLDL 220
+L EL + N+I +P VF L ++ + + N + S P F L KL L +
Sbjct: 124 ---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179
Query: 221 SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE 280
S + I ++ + + E L L +N+++ + ++
Sbjct: 180 SEAKLTGIPKDLPETLNE---------------------------LHLDHNKIQAIELED 212
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
L KL L L N +I S S L+ L L N+L++V +L L + +
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYL 271
Query: 341 SYNKLDRLEVASFDPIEN-----SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNY 395
N + ++ V F P+ + + N + Y
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP-----------------------Y 308
Query: 396 TDIPKGLFKMNPHLQFLNLSGN 417
++ F+ +
Sbjct: 309 WEVQPATFRCVTDRLAIQFGNY 330
Score = 112 bits (281), Expect = 1e-27
Identities = 59/205 (28%), Positives = 93/205 (45%), Gaps = 10/205 (4%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L+ +C GL+ + P I D LDL N + L D+ + L+ L L+L N
Sbjct: 34 HLRVVQCSDLGLKAV-PK--EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
I EK+FS KLQ L + +N L ++ ++L EL I N++ ++ F +
Sbjct: 91 SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLR 147
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
N + +++ GN ++ S + +KL L I++ T IPK L L L+L N
Sbjct: 148 N-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHN 203
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNK 442
+Q I KL L L N+
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQ 228
Score = 91.6 bits (228), Expect = 1e-20
Identities = 50/242 (20%), Positives = 88/242 (36%), Gaps = 49/242 (20%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
S L L + N I ++ +F +++ + M L++
Sbjct: 123 SSLVELRIHDNRIRKVPKGVFSGLRNMNCI-------------------EMGGNPLEN-- 161
Query: 69 RYEIVCRRGDMANPIPIGQ-MDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+ G L L+I + LT P + L ELH+ ++
Sbjct: 162 ------------SGFEPGAFDGLKLNYLRI-----SEAKLTGIP-KDLPETLNELHLDHN 203
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
I AI L L L HN I + + + + L+EL+LD NK+ +P +
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPD 262
Query: 188 LSDLRVLSLAHNRISKLAPRLF------LKLSKLKSLDLSYNDI--VEINPEIFKDIQEL 239
L L+V+ L N I+K+ F +K + + L N + E+ P F+ + +
Sbjct: 263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDR 322
Query: 240 KT 241
Sbjct: 323 LA 324
Score = 77.4 bits (191), Expect = 1e-15
Identities = 36/160 (22%), Positives = 59/160 (36%), Gaps = 32/160 (20%)
Query: 287 LETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
L L N + + F L L L N+++K+ AF+ L L +L IS N L
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115
Query: 347 RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN 406
+ SL +L+I N I +PKG+F
Sbjct: 116 EIPPNLPS----SLVELRIHDNRI-------------------------RKVPKGVFSGL 146
Query: 407 PHLQFLNLSGNNLQD--IHNLLYQSNIKLTHLDLSRNKFK 444
++ + + GN L++ + +KL +L +S K
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFD-GLKLNYLRISEAKLT 185
Score = 28.1 bits (63), Expect = 7.8
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQ 33
+ KL+ L +S N +VEI P + +
Sbjct: 101 LRKLQKLYISKNHLVEIPPNLPSSLV 126
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein;
innate immunity, leucine-rich repeat, innate immune
receptor system; HET: NAG; 2.47A {Danio rerio} PDB:
3v44_A*
Length = 455
Score = 168 bits (428), Expect = 4e-47
Identities = 77/352 (21%), Positives = 128/352 (36%), Gaps = 37/352 (10%)
Query: 113 FQQFQHLEELHITNSFIP-AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F + Q L+ L + I + F G+ SL L L +N L F G+ NL+ L
Sbjct: 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109
Query: 172 LDFNKIES--IPSSVFMHLSDLRVLSLAHNRISKLAPR-LFLKLSKLKSLDLSYNDIVEI 228
L ++ + + F L+ L +L L N I K+ P FL + + LDL++N + I
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI 169
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE 288
E + Q R L+ + D+ L + +
Sbjct: 170 CEEDLLNFQGKHFTLLR--------------LSSITLQDMNEYWLGWEKCGNPFKNTSIT 215
Query: 289 TLLLDGNHFPVILEKSFSS-------------QFKLQVLCLKRNRLAKVTTTAFTNL--T 333
TL L GN F + K F F L +
Sbjct: 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS 275
Query: 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ-LSDVKNVLDKLVKLKALSIAD 392
+ D+S +K+ L + F + L L ++ N I + D N L L L+++
Sbjct: 276 GVKTCDLSKSKIFALLKSVFSHFTD-LEQLTLAQNEINKIDD--NAFWGLTHLLKLNLSQ 332
Query: 393 MNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
I +F+ L+ L+LS N+++ + + + L L L N+ K
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK 384
Score = 153 bits (388), Expect = 2e-41
Identities = 68/333 (20%), Positives = 131/333 (39%), Gaps = 31/333 (9%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHN 199
+ Y++L+ N+I L + +F + +LQ L ++ I ++ F LS L +L L +N
Sbjct: 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDI--VEINPEIFKDIQELKTFKCRSCGLENINPM-M 256
+ +L F L+ L+ L L+ ++ ++ FK + L+ R ++ I P
Sbjct: 90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD----------GNHFPVILEKSFS 306
+ + LDL +N++K + ++L + + LL +
Sbjct: 150 FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209
Query: 307 SQFKLQVLCLKRNRLAKVTTTAFTNLTNLIEL-------------DISYNKLDRLEVASF 353
+ L L N + F + ++ + + +F
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269
Query: 354 DPIE-NSLRDLKISGNNIQ-LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF 411
+E + ++ +S + I L +V L+ L++A I F HL
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLK--SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327
Query: 412 LNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
LNLS N L I + ++++ KL LDLS N +
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Score = 150 bits (380), Expect = 2e-40
Identities = 70/336 (20%), Positives = 119/336 (35%), Gaps = 36/336 (10%)
Query: 105 NHLTIGP--IFQQFQHLEELH-----ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL- 156
N F +LE L + + + + F + SL L L NNI +
Sbjct: 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSG---NFFKPLTSLEMLVLRDNNIKKIQ 145
Query: 157 LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV----------LSLAHNRISKLAP 206
F M L L FNK++SI ++ + +
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205
Query: 207 RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
K + + +LDLS N E + F D +
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS----------- 254
Query: 267 DLGYNQLKYLLADELEDLK--KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV 324
G+ K + L+ ++T L + +L+ FS L+ L L +N + K+
Sbjct: 255 SFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI 314
Query: 325 TTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVK 384
AF LT+L++L++S N L ++ F+ ++ L L +S N+I+ + L
Sbjct: 315 DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK-LEVLDLSYNHIR-ALGDQSFLGLPN 372
Query: 385 LKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
LK L++ +P G+F LQ + L N
Sbjct: 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408
Score = 117 bits (295), Expect = 9e-29
Identities = 58/295 (19%), Positives = 102/295 (34%), Gaps = 45/295 (15%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
M + LDL++N + I E + Q + L + + C +
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSE---ENPNHLTIGPIFQQFQHLEELHI 124
+ DL K ++ + I + +
Sbjct: 213 SITTL----------------DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF 256
Query: 125 TNSFIPAIGFHPFWGVP--SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS 182
++ F G+ ++ +L+ + I +LL F +L++L L N+I I
Sbjct: 257 GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316
Query: 183 SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
+ F L+ L L+L+ N + + R+F L KL+ LDLSYN I + + F + LK
Sbjct: 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE- 375
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L L NQLK + + L L+ + L N +
Sbjct: 376 -----------------------LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407
Score = 28.9 bits (65), Expect = 3.6
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 3 FTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF 39
F + S +K+ DLS + I + +F D L
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLT 305
>4fmz_A Internalin; leucine rich repeat, structural genomic center for
structural genomics, JCSG, protein structure INI
PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes
serotype 4B}
Length = 347
Score = 163 bits (414), Expect = 4e-46
Identities = 77/340 (22%), Positives = 145/340 (42%), Gaps = 29/340 (8%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+T ++ + + +L + + +I + +L YLNL N IT + +
Sbjct: 32 ASVTDVVTQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDIS--PLSNL 87
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
+ L LY+ NKI I + +L++LR L L + IS ++P L+K+ SL+L N
Sbjct: 88 VKLTNLYIGTNKITDISA--LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH 143
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ ++ L ++++ P+ + L DL L L YNQ++ + L L
Sbjct: 144 NLSD-LSPLSNMTGLNYLTVTESKVKDVTPI--ANLTDLYSLSLNYNQIEDI--SPLASL 198
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
L N I ++ +L L + N++ ++ NL+ L L+I N+
Sbjct: 199 TSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQ 254
Query: 345 LDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
+ + +++ L+ L + N I SD+ L+ L +L +L + + + +
Sbjct: 255 ISDIN-----AVKDLTKLKMLNVGSNQI--SDISV-LNNLSQLNSLFLNNNQLGNEDMEV 306
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
+L L LS N++ DI L S K+ D +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPL--ASLSKMDSADFANQV 344
Score = 147 bits (373), Expect = 3e-40
Identities = 73/334 (21%), Positives = 138/334 (41%), Gaps = 31/334 (9%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L + I I P + L ++T ++ + + ++ +L + K+
Sbjct: 2 AATLATLPAPINQI--FPDADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEKVA 57
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE 238
SI +L++L L+L N+I+ ++P L KL +L + N I +I+ +++
Sbjct: 58 SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISA--LQNLTN 111
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298
L+ + +I+P+ + L + L+LG N L L ++ L L + +
Sbjct: 112 LRELYLNEDNISDISPL--ANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK 168
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN 358
+ ++ L L L N++ + + +LT+L N++ + P+ N
Sbjct: 169 DV--TPIANLTDLYSLSLNYNQIEDI--SPLASLTSLHYFTAYVNQITDIT-----PVAN 219
Query: 359 --SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG 416
L LKI N +++D+ L L +L L I +DI K L+ LN+
Sbjct: 220 MTRLNSLKIGNN--KITDLSP-LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS 274
Query: 417 NNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
N + DI L S L L L+ N+ D +
Sbjct: 275 NQISDISVLNNLSQ--LNSLFLNNNQLGNEDMEV 306
Score = 137 bits (348), Expect = 1e-36
Identities = 60/318 (18%), Positives = 132/318 (41%), Gaps = 27/318 (8%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+ + +LE L++ + I I P + L L + N IT + + +
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQITDIS--PLSNLVKLTNLYIGTNKITDIS--ALQNL 109
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
NL+ELYL+ + I I +L+ + L+L N L ++ L L ++ +
Sbjct: 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLS-NMTGLNYLTVTESK 166
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ ++ P ++ +L + +E+I+P+ + L L Y NQ+ + + ++
Sbjct: 167 VKDVTP--IANLTDLYSLSLNYNQIEDISPL--ASLTSLHYFTAYVNQITDI--TPVANM 220
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
+L +L + N + ++ +L L + N+++ + A +LT L L++ N+
Sbjct: 221 TRLNSLKIGNNKITDL--SPLANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQ 276
Query: 345 LDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
+ + + N L L ++ N + D+ V+ L L L ++ + TDI
Sbjct: 277 ISDIS-----VLNNLSQLNSLFLNNNQLGNEDM-EVIGGLTNLTTLFLSQNHITDIRP-- 328
Query: 403 FKMNPHLQFLNLSGNNLQ 420
+ + + ++
Sbjct: 329 LASLSKMDSADFANQVIK 346
Score = 64.1 bits (157), Expect = 3e-11
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 4/99 (4%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N ++ + L+ L++ ++ I I + L L L +N + + G+
Sbjct: 253 NQISDINAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
NL L+L N I I LS + A+ I K
Sbjct: 311 TNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid
recognition, receptor immunity, lipid binding,
glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO
MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Length = 606
Score = 165 bits (419), Expect = 7e-45
Identities = 85/450 (18%), Positives = 163/450 (36%), Gaps = 58/450 (12%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECA---- 63
++ L +DLSYN I I + +++ + L + + + +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS---LDMSLNPIDFIQDQAFQGIKLHE 208
Query: 64 LDDRGRYEIVCRRGDMANPIPIGQMDL-GTEVLKIVPSE-ENPNHLTIGP--IFQQFQHL 119
L RG + +N + +L G V +++ E ++ +L I I + +
Sbjct: 209 LTLRGNFNS-------SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 120 --EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+E +T + + F + ++ ++L +I L D Q L + ++
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK--HFKWQSLSIIRCQL 319
Query: 178 ESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQ 237
+ P + L L+ L+L N+ S + L L LDLS N + + D+
Sbjct: 320 KQFP---TLDLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALSFSGCCSYSDLG 374
Query: 238 --ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA-DELEDLKKLETLLLDG 294
L+ G ++ L +L +LD ++ LK + L+KL L +
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVT-TTAFTNLTNLIELDISYNKLDRLEVASF 353
+ + + F L L + N T + F N TNL LD+S +L+++ F
Sbjct: 434 TNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF 493
Query: 354 DPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLN 413
D + L+ L +S NN+ + + L L+
Sbjct: 494 DTLHR-LQLLNMSHNNL-------------------------LFLDSSHYNQLYSLSTLD 527
Query: 414 LSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
S N ++ +L L +L+ N
Sbjct: 528 CSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
Score = 163 bits (415), Expect = 3e-44
Identities = 80/362 (22%), Positives = 127/362 (35%), Gaps = 28/362 (7%)
Query: 105 NHLT--IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N L F F L+ L ++ I I + G+ L L LT N I S +F
Sbjct: 42 NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA-PRLFLKLSKLKSLDLS 221
G+ +L+ L K+ S+ S L L+ L++AHN I P F L+ L +DLS
Sbjct: 102 GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161
Query: 222 YNDIVEINPEIFKDIQELK----TFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY-L 276
YN I I + ++E + ++ I + + L L L N +
Sbjct: 162 YNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNI 220
Query: 277 LADELEDLKKLETLLLDGNHF------PVILEKSFSSQFKLQVLCLK--RNRLAKVTTTA 328
+ L++L L L F + + + +
Sbjct: 221 MKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
F L N+ + ++ + LE + L I ++ + L LK+L
Sbjct: 281 FHCLANVSAMSLAGVSIKYLEDVPKH---FKWQSLSIIRCQLK----QFPTLDLPFLKSL 333
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQ--SNIKLTHLDLSRNKFKGF 446
++ N I + P L +L+LS N L Y L HLDLS N
Sbjct: 334 TLTM-NKGSISFKKVAL-PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM 391
Query: 447 DE 448
Sbjct: 392 SA 393
Score = 163 bits (415), Expect = 3e-44
Identities = 67/317 (21%), Positives = 128/317 (40%), Gaps = 20/317 (6%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
S + ++L+ N + L Y+F LQ L L +IE+I + L L L L N
Sbjct: 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN-PMMYSI 259
I +P F L+ L++L + + + LK + + P +S
Sbjct: 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKL----ETLLLDGNHFPVILEKSFSSQFKLQVLC 315
L +L+++DL YN ++ + ++L+ L++ +L + N I +++F KL L
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELT 210
Query: 316 LKRNRL-AKVTTTAFTNLTNLIELDISYN------KLDRLEVASFDPIEN-SLRDLKISG 367
L+ N + + T NL L + L+ E + + + + ++ + +++
Sbjct: 211 LRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
N SD L + A+S+A ++ + Q L++ L+ L
Sbjct: 271 TND-FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--WQSLSIIRCQLKQFPTL-- 325
Query: 428 QSNIKLTHLDLSRNKFK 444
L L L+ NK
Sbjct: 326 -DLPFLKSLTLTMNKGS 341
Score = 159 bits (405), Expect = 8e-43
Identities = 100/463 (21%), Positives = 161/463 (34%), Gaps = 57/463 (12%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
F + + LK L++++N I + + T L V + + + +
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQT--------ITV 170
Query: 62 CALDDRGRYEIVCRRGDMA-NPIPIGQMDLGTEV-LKIVPSEENPNHLTIGP-IFQQFQH 118
L V DM+ NPI Q + L + N N I Q
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAG 230
Query: 119 LEELHIT------NSFIPAIGFHPFWGVPSLRY--LNLTHNNITSLLDYNFKGMMNLQEL 170
L + + G+ + LT+ N S F + N+ +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP 230
L I+ + + LS+ ++ + L L LKSL L+ N
Sbjct: 291 SLAGVSIKYLEDVPKH--FKWQSLSIIRCQLKQFP---TLDLPFLKSLTLTMNKGSISFK 345
Query: 231 EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK--KLE 288
++ L L YLDL N L + DL L
Sbjct: 346 KVA--------------------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLR 379
Query: 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT-TTAFTNLTNLIELDISYNKLDR 347
L L N +I+ +F +LQ L + + L +VT +AF +L L+ LDISY
Sbjct: 380 HLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKI 438
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
F + + L LK++GN+ + + + NV L L ++ I G+F
Sbjct: 439 DFDGIFLGLTS-LNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497
Query: 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
LQ LN+S NNL + + Y L+ LD S N+ +
Sbjct: 498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540
Score = 159 bits (403), Expect = 1e-42
Identities = 70/348 (20%), Positives = 134/348 (38%), Gaps = 26/348 (7%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ + ++ + + + + F L++L+L+ I ++ D + G+ +L L L N
Sbjct: 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFK 234
I+S F L+ L L +++ L +L LK L++++N I P F
Sbjct: 91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADL----IYLDLGYNQLKYLLADELEDLKKLETL 290
++ L ++ I L + + LD+ N + ++ + + KL L
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHEL 209
Query: 291 LLDGNHF-PVILEKSFSSQFKLQVLCLKRNR------LAKVTTTAFTNLTNL--IELDIS 341
L GN I++ + L V L L + L ++ E ++
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 342 YNKLDRLEVASFDPIENSLRDLKISGNNI-QLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
Y ++ F + N + + ++G +I L D + K K ++LSI P
Sbjct: 270 YTNDFSDDIVKFHCLAN-VSAMSLAGVSIKYLED----VPKHFKWQSLSIIRCQLKQFPT 324
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
P L+ L L+ N + + L++LDLSRN
Sbjct: 325 LDL---PFLKSLTLTMNKGSISFKKVALPS--LSYLDLSRNALSFSGC 367
Score = 156 bits (396), Expect = 1e-41
Identities = 50/313 (15%), Positives = 108/313 (34%), Gaps = 18/313 (5%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
++ + D + + + L FN ++ + S F + S+L+ L L+ I +
Sbjct: 16 YQCMDQKLSKVPDDIPS---STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
+ + L L +L L+ N I +P F + L+ L ++ L L
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132
Query: 266 LDLGYNQLKYL-LADELEDLKKLETLLLDGNHFPVILEKSFSS----QFKLQVLCLKRNR 320
L++ +N + L +L L + L N+ I L + N
Sbjct: 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP 192
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI----QLSDV- 375
+ + AF + L EL + N + + L ++ L
Sbjct: 193 IDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251
Query: 376 KNVLDKLVKLKA--LSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKL 433
++++ L + + N F ++ ++L+G +++ + ++
Sbjct: 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFK--W 309
Query: 434 THLDLSRNKFKGF 446
L + R + K F
Sbjct: 310 QSLSIIRCQLKQF 322
Score = 155 bits (393), Expect = 3e-41
Identities = 69/358 (19%), Positives = 118/358 (32%), Gaps = 27/358 (7%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ HL L +T + I + F G+ SL L + SL + ++ L++L +
Sbjct: 76 WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135
Query: 173 DFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLK----SLDLSYNDIVE 227
N I S + F +L++L + L++N I + L + SLD+S N I
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195
Query: 228 INPEIFKDIQELKTFKCRSCGL-ENINPMMYSILADLIYLDL------GYNQLKYLLADE 280
I + F+ I+ L R NI LA L L L+
Sbjct: 196 IQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSI 254
Query: 281 LEDLKKLETLLLDGNHFPV--ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIEL 338
+E L + + F + + L + + L
Sbjct: 255 MEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSL 312
Query: 339 DISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI 398
I +L + L+ L ++ N +S L L L ++ +
Sbjct: 313 SIIRCQLKQFPTLDL----PFLKSLTLTMNKGSIS---FKKVALPSLSYLDLSRNALSFS 365
Query: 399 PKGLFKM--NPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMS 454
+ L+ L+LS N + +L HLD + K E S +S
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE-ELQHLDFQHSTLKRVTEFSAFLS 422
Score = 149 bits (379), Expect = 3e-39
Identities = 78/440 (17%), Positives = 140/440 (31%), Gaps = 75/440 (17%)
Query: 10 KLKSLDLSYN-DIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
KL L L N + I +++ + + +
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF-------------- 250
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPI-FQQFQHLEELHITNS 127
I G D+ + N + + F ++ + +
Sbjct: 251 -----------EPSIMEGLCDVTIDEF----RLTYTNDFSDDIVKFHCLANVSAMSLAGV 295
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
I + P + L++ + + L+ L L NK +
Sbjct: 296 SIKYLEDVPKH--FKWQSLSIIRCQLKQF---PTLDLPFLKSLTLTMNKGSISFK--KVA 348
Query: 188 LSDLRVLSLAHNRISKLAPRLF--LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCR 245
L L L L+ N +S + L + L+ LDLS+N + + F ++EL+ +
Sbjct: 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQ 407
Query: 246 SCGLENINPM-MYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF-PVILEK 303
L+ + + L L+YLD+ Y K L L TL + GN F L
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDL 363
F++ L L L + +L +++ F L L L++S+N L L+ + ++ + SL L
Sbjct: 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL-YSLSTL 526
Query: 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN------ 417
S N I L L F NL+ N
Sbjct: 527 DCSFNRI-------------------------ETSKGILQHFPKSLAFFNLTNNSVACIC 561
Query: 418 NLQDIHNLLYQSNIKLTHLD 437
Q + + L +++
Sbjct: 562 EHQKFLQWVKEQKQFLVNVE 581
Score = 112 bits (281), Expect = 2e-26
Identities = 48/215 (22%), Positives = 81/215 (37%), Gaps = 9/215 (4%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
T++C L + I + +DL +N LK L + + +L+ L L
Sbjct: 14 ITYQCMDQKLSKVPD---DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
I +K++ L L L N + + +F+ LT+L L KL LE +
Sbjct: 71 IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT- 129
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK----GLFKMNPHLQFLNLS 415
L+ L ++ N I + L L + ++ I L + L++S
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
N + I + +Q IKL L L N K+
Sbjct: 190 LNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKT 223
Score = 72.0 bits (177), Expect = 2e-13
Identities = 28/169 (16%), Positives = 57/169 (33%), Gaps = 29/169 (17%)
Query: 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRL 348
T + + SS + + L N L + + +F+N + L LD+S +++ +
Sbjct: 15 TYQCMDQKLSKVPDDIPSS---TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71
Query: 349 EVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408
E ++ + + L +L ++GN I G F
Sbjct: 72 EDKAWHGLHH-LSNLILTGNPI-------------------------QSFSPGSFSGLTS 105
Query: 409 LQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPK 457
L+ L L + + I L L+++ N +Y +
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain,
protein binding, extra protein, structural genomics;
2.80A {Bacteroides thetaiotaomicron}
Length = 876
Score = 163 bits (413), Expect = 3e-43
Identities = 62/361 (17%), Positives = 119/361 (32%), Gaps = 45/361 (12%)
Query: 99 PSEENPNHLTIGPIFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITS 155
++ + + ++ ++ PA + L L+ HN +
Sbjct: 530 AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS--LQKMVKLGLLDCVHNKVRH 587
Query: 156 LLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFL-KLSK 214
L F + L +L LD+N+IE IP + L +HN++ + +
Sbjct: 588 L--EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645
Query: 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
+ S+D SYN I I + + K + + L YN+++
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYK-------------------GINASTVTLSYNEIQ 686
Query: 275 YLLADELEDLKKLETLLLDGNHFPVI-------LEKSFSSQFKLQVLCLKRNRLAKV-TT 326
+ + T++L N I + ++ + + L + L+ N+L +
Sbjct: 687 KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDD 746
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN-----NIQLSDVKNVLDK 381
T L L +D+SYN + + L+ I N L +
Sbjct: 747 FRATTLPYLSNMDVSYNCFSSFPTQPLNS--SQLKAFGIRHQRDAEGNRILRQWPTGITT 804
Query: 382 LVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
L L I + + + L P L L+++ N I I+ L +
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861
Query: 442 K 442
K
Sbjct: 862 K 862
Score = 158 bits (401), Expect = 1e-41
Identities = 69/490 (14%), Positives = 140/490 (28%), Gaps = 59/490 (12%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+++LK L + ++T + M D R
Sbjct: 346 LTELKVLSFGTHSETVSGRLFG--------DEELTPDMSEERKHRIRMHYKKMFLDYDQR 397
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLT-IGPIFQQFQHLEELHITN 126
+ + NP LK N +T I Q+ L+ ++ N
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457
Query: 127 ----SFIPAIGFHP---------------FWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
A+ + + + L + L + + L + L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517
Query: 168 QELYLDFNKIESIPSSV---------FMHLSDLRVLSLAHNRISKL-APRLFLKLSKLKS 217
Q L + N+ S +++ + +N + + A K+ KL
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 218 LDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL 277
LD +N + + F +L K +E I + + L +N+LKY+
Sbjct: 578 LDCVHNKVRHLEA--FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIP 635
Query: 278 AD-ELEDLKKLETLLLDGNHFPVILEKSFSSQ-----FKLQVLCLKRNRLAKVTTTAFTN 331
+ + + ++ N S + L N + K T F
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695
Query: 332 LTNLIELDISYNKLDRLEVASFDPIEN------SLRDLKISGNNIQLSDVKNVLDKLVKL 385
+ + + +S N + + S P + L + + N + L L
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYL 755
Query: 386 KALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN------IKLTHLDLS 439
+ ++ ++ P L+ + + + +L Q L L +
Sbjct: 756 SNMDVSYNCFSSFPTQPLNS-SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814
Query: 440 RNKFKGFDEK 449
N + DEK
Sbjct: 815 SNDIRKVDEK 824
Score = 155 bits (394), Expect = 9e-41
Identities = 72/464 (15%), Positives = 152/464 (32%), Gaps = 42/464 (9%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++ L L+ P+ + + L S +V + L
Sbjct: 322 NGRVTGLSLAGFGAKGRVPDAIGQLTELK-------VLSFGTHSETVSGRLFGDEELTPD 374
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
E R + + + ++ N N L++ I N
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQR-LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNL 433
Query: 128 FIPAIGFHP--FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
I F + L+ + ++ T ++ ++ D+ K +
Sbjct: 434 T-NRITFISKAIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSW 487
Query: 186 MHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN---------PEIFKDI 236
+L DL + L + P L +L+SL+++ N + +
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547
Query: 237 QELKTFKCRSCGLENI-NPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
+++ F LE + L LD +N++++L + KL L LD N
Sbjct: 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDYN 605
Query: 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKV-TTTAFTNLTNLIELDISYNKLDRLEVASFD 354
I E + +++ L N+L + ++ + +D SYNK+
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665
Query: 355 PIEN----SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP--- 407
+++ + + +S N IQ + + + +++ T IP+ K
Sbjct: 666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724
Query: 408 ----HLQFLNLSGNNLQDIHNLLYQSNIK-LTHLDLSRNKFKGF 446
L ++L N L + + + + L+++D+S N F F
Sbjct: 725 KNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768
Score = 133 bits (335), Expect = 3e-33
Identities = 60/344 (17%), Positives = 108/344 (31%), Gaps = 61/344 (17%)
Query: 105 NHLT---IGPIFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLD 158
N+L Q+ L L + + A G L L L +N I + +
Sbjct: 558 NNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG-----TNVKLTDLKLDYNQIEEIPE 612
Query: 159 YNFKGMMNLQELYLDFNKIESIPSSVFMH-LSDLRVLSLAHNRISKLAPRLF-----LKL 212
++ L NK++ IP+ + + + ++N+I + K
Sbjct: 613 DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKG 672
Query: 213 SKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENI-------NPMMYSILADLIY 265
++ LSYN+I + E+F + T + + +I Y L
Sbjct: 673 INASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTT 732
Query: 266 LDLGYNQLKYLLAD-ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR------ 318
+DL +N+L L D L L + + N F + +L+ ++
Sbjct: 733 IDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNSSQLKAFGIRHQRDAEG 791
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378
NR+ + T T +LI+L I N + +++ L L I+ N
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT----PQLYILDIADNPN-------- 839
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI 422
I L + QDI
Sbjct: 840 -----------------ISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 105 bits (264), Expect = 3e-24
Identities = 47/290 (16%), Positives = 82/290 (28%), Gaps = 37/290 (12%)
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
+ + P + + LSLA P +L++LK L +
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
G E + P M I + L Y L L+ +
Sbjct: 367 ---------------GDEELTPDMSEERKHRIRMHYKKMFLDYD--QRLNLSDLLQDAIN 409
Query: 293 DGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
I + S S Q+ L NR+ + + A LT L + + +
Sbjct: 410 RNPEMKPIKKDSRISLKDTQIGNLT-NRITFI-SKAIQRLTKLQIIYFANSPFTYD---- 463
Query: 353 FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNY-TDIPKGLFKMNPHLQF 411
I D + + L L + + + T +P L+ + P LQ
Sbjct: 464 --NIAVDWEDANSDYAKQ-YENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL-PELQS 519
Query: 412 LNLSGNNLQDIHNLLYQSNI---------KLTHLDLSRNKFKGFDEKSYI 452
LN++ N L K+ + N + F + +
Sbjct: 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569
Score = 103 bits (259), Expect = 1e-23
Identities = 38/250 (15%), Positives = 78/250 (31%), Gaps = 26/250 (10%)
Query: 105 NHLTIGPI---FQQFQHLEELHITN---SFIPAIGFHPF--WGVPSLRYLNLTHNNITSL 156
N L P + + + + + + + L++N I
Sbjct: 629 NKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688
Query: 157 LDYNFKGMMNLQELYLDFNKIESIPSSV-------FMHLSDLRVLSLAHNRISKLAPRLF 209
F + + L N + SIP + + + L + L N+++ L+
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFR 748
Query: 210 L-KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI------LAD 262
L L ++D+SYN + +LK F R N ++
Sbjct: 749 ATTLPYLSNMDVSYNCFSSFPTQPLN-SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPS 807
Query: 263 LIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLA 322
LI L +G N ++ + + +L L + N I S + + L ++
Sbjct: 808 LIQLQIGSNDIRKVDE---KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864
Query: 323 KVTTTAFTNL 332
+ +
Sbjct: 865 DIRGCDALGI 874
Score = 100 bits (251), Expect = 1e-22
Identities = 35/214 (16%), Positives = 73/214 (34%), Gaps = 18/214 (8%)
Query: 101 EENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL---- 156
+++ + + + ++ + I F + + L++N +TS+
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENS 716
Query: 157 ---LDYNFKGMMNLQELYLDFNKIESIPSSVFM-HLSDLRVLSLAHNRISKLAPRLFLKL 212
D N+K L + L FNK+ S+ L L + +++N S P L
Sbjct: 717 LKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF-PTQPLNS 775
Query: 213 SKLKSLDLSYNDIVEIN------PEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
S+LK+ + + E N P L + S + ++ + L L
Sbjct: 776 SQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE---KLTPQLYIL 832
Query: 267 DLGYNQLKYLLADELEDLKKLETLLLDGNHFPVI 300
D+ N + + + +L + I
Sbjct: 833 DIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866
Score = 62.2 bits (151), Expect = 2e-10
Identities = 22/145 (15%), Positives = 40/145 (27%), Gaps = 19/145 (13%)
Query: 105 NHLTIGP---IFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTH------NN 152
N LT +L + ++ S P L+ + H N
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPT----QPLNSSQLKAFGIRHQRDAEGNR 793
Query: 153 ITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKL 212
I +L +L + N I + + L +L +A N +
Sbjct: 794 ILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPY 850
Query: 213 SKLKSLDLSYNDIVEINPEIFKDIQ 237
+ L Y+ +I I+
Sbjct: 851 IEAGMYVLLYDKTQDIRGCDALGIE 875
Score = 54.5 bits (131), Expect = 6e-08
Identities = 27/229 (11%), Positives = 67/229 (29%), Gaps = 46/229 (20%)
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV- 324
+ + +L++ ++ L L G + + +L+VL +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 325 ------------------------TTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN-- 358
L D+ + ++R ++
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRI 423
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
SL+D +I +++ + + +L KL+ + A+ +T + + + + N
Sbjct: 424 SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483
Query: 419 LQDIHNL-------LYQSNI------------KLTHLDLSRNKFKGFDE 448
NL LY +L L+++ N+ +
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532
Score = 51.8 bits (124), Expect = 4e-07
Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 105 NHLT-IGPIFQQFQHLEELHITNSFIPA----IGFHP--FWGVPSLRYLNLTHNNITSLL 157
N + L+ I + + P PSL L + N+I +
Sbjct: 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVD 822
Query: 158 DYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
+ L L + N SI + + + L +++ + L + +
Sbjct: 823 EKLTP---QLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIER 876
Score = 31.4 bits (71), Expect = 0.82
Identities = 11/84 (13%), Positives = 23/84 (27%), Gaps = 10/84 (11%)
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQ-----DIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+ D P N + L+L+G + I L +L L +
Sbjct: 310 MWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQL-----TELKVLSFGTHSETVSGR 364
Query: 449 KSYIMSEPKNIHKAAKNSFALQSS 472
++ + K+ +
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYK 388
Score = 28.7 bits (64), Expect = 5.1
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQ 33
L L + NDI +++ ++ +
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKLTPQLY 830
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding;
HET: NAG; 2.00A {Anopheles gambiae}
Length = 317
Score = 153 bits (389), Expect = 7e-43
Identities = 49/304 (16%), Positives = 107/304 (35%), Gaps = 42/304 (13%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ +T +++ L + N++EL L N + I ++ + L +L+L+ N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+ + LS L++LDL+ N + E+ +
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQEL-----------------------------LVG 98
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+ L N + + + + + L N ++ + + ++Q L LK N
Sbjct: 99 PSIETLHAANNNISRV---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155
Query: 321 LAKVTTTAF-TNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
+ V + L L++ YN + ++ L+ L +S N +L+ +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA---KLKTLDLSSN--KLAFMGPEF 210
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ-DIHNLLYQSNIKLTHLDL 438
+ +S+ + I K L +L+ +L GN + N ++ +
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFS-QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK 269
Query: 439 SRNK 442
K
Sbjct: 270 QTVK 273
Score = 139 bits (352), Expect = 1e-37
Identities = 52/263 (19%), Positives = 97/263 (36%), Gaps = 15/263 (5%)
Query: 182 SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
+ + + ++ + + + + L +K LDLS N + +I+ +L+
Sbjct: 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLEL 62
Query: 242 FKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVIL 301
S L + L+ L LDL N ++ EL +ETL N+ +
Sbjct: 63 LNLSSNVLYETLDL--ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVS 115
Query: 302 EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLR 361
+ + L N++ + + + LD+ N++D + A ++L
Sbjct: 116 CSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172
Query: 362 DLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD 421
L + N + DVK + KLK L ++ + + +++L N L
Sbjct: 173 HLNLQYN--FIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSA-AGVTWISLRNNKLVL 228
Query: 422 IHNLLYQSNIKLTHLDLSRNKFK 444
I L S L H DL N F
Sbjct: 229 IEKALRFSQ-NLEHFDLRGNGFH 250
Score = 135 bits (343), Expect = 2e-36
Identities = 57/338 (16%), Positives = 116/338 (34%), Gaps = 44/338 (13%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ L + Q +++EL ++ + + I L LNL+ N + LD +
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE 77
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ L+ L L+ N ++ + + L A+N IS+++ K++ L+
Sbjct: 78 SLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLAN 129
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL-LADEL 281
N I + + + YLDL N++ + A+
Sbjct: 130 NKITMLRDLDEGC------------------------RSRVQYLDLKLNEIDTVNFAELA 165
Query: 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341
LE L L N + + + KL+ L L N+LA + F + + + +
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQVVFA--KLKTLDLSSNKLAFM-GPEFQSAAGVTWISLR 222
Query: 342 YNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKG 401
NKL +E A +L + GN +++ K +++ ++ +
Sbjct: 223 NNKLVLIEKALRFS--QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ--TVKKLTGQ 278
Query: 402 LFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
+ + +D+ I L H
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
Score = 94.3 bits (235), Expect = 2e-21
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLI 336
+ + ++ + + + + L S + ++ L L N L++++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 337 ELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT 396
L++S N L E + + LR L ++ N +Q L ++ L A+ N +
Sbjct: 62 LLNLSSNVLY--ETLDLESLST-LRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112
Query: 397 DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYI 452
+ + + L+ N + + +L ++ +LDL N+ +
Sbjct: 113 RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
Score = 71.2 bits (175), Expect = 9e-14
Identities = 34/237 (14%), Positives = 75/237 (31%), Gaps = 43/237 (18%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECA 63
L+ +++L + N+I ++ + + +YL ++ +++
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKK----------NIYLANNKITML-------- 135
Query: 64 LDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELH 123
R D + +DL + V E LE L+
Sbjct: 136 -----------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD---------TLEHLN 175
Query: 124 ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSS 183
+ +FI + L+ L+L+ N + + F+ + + L NK+ I +
Sbjct: 176 LQYNFIYDV--KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKA 232
Query: 184 VFMHLSDLRVLSLAHNRISKLAPR-LFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+L L N R F K +++++ + E + L
Sbjct: 233 -LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL 288
Score = 33.4 bits (77), Expect = 0.13
Identities = 20/121 (16%), Positives = 31/121 (25%), Gaps = 31/121 (25%)
Query: 105 NHLT-IGPIFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDY 159
N L +GP FQ + + + N I +L + +L N L
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLVLIEKA----LRFSQNLEHFDLRGNGFHCGTLRD 256
Query: 160 NFKGMMNLQELYLDFNK----------------------IESIPSSVFMHLSDLRVLSLA 197
F +Q + K E +P+ L L
Sbjct: 257 FFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316
Query: 198 H 198
H
Sbjct: 317 H 317
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS,
immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Length = 570
Score = 156 bits (396), Expect = 6e-42
Identities = 67/315 (21%), Positives = 127/315 (40%), Gaps = 19/315 (6%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
S + L+L+ N + L Y+F LQ L L +I++I + LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN-PMMYSI 259
I LA F LS L+ L ++ + ++ LK +++ P +S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLE----TLLLDGNHFPVILEKSFSSQFKLQVLC 315
L +L +LDL N+++ + +L L ++ +L L N I +F +L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLT 206
Query: 316 LKRNRL-AKVTTTAFTNLTNLIELDI------SYNKLDRLEVASFDPIEN-SLRDLKISG 367
L+ N V T L L + + L++ + ++ + + N ++ + +++
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
+ L D+ ++ + L + + S+ + + + Q L L L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG--WQHLELVNCKFGQFPTLKL 324
Query: 428 QSNIKLTHLDLSRNK 442
+S L L + NK
Sbjct: 325 KS---LKRLTFTSNK 336
Score = 156 bits (396), Expect = 8e-42
Identities = 77/372 (20%), Positives = 132/372 (35%), Gaps = 41/372 (11%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+Q HL L +T + I ++ F G+ SL+ L N+ SL ++ + L+EL +
Sbjct: 72 YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131
Query: 173 DFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLK----SLDLSYNDIVE 227
N I+S F +L++L L L+ N+I + L ++ SLDLS N +
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191
Query: 228 INPEIFKDIQELKTFKCRSCGLE-NINPMMYSILADLIYLDL------GYNQLKYLLADE 280
I P FK+I+ L R+ N+ LA L L L+
Sbjct: 192 IQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 250
Query: 281 LEDLKKLETLLLDGNH---FPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT------- 330
LE L L + + + F+ + L + +V ++
Sbjct: 251 LEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLE 310
Query: 331 ------------NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVK-N 377
L +L L + NK P SL L +S N +
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP---SLEFLDLSRNGLSFKGCCSQ 367
Query: 378 VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL-LYQSNIKLTHL 436
LK L ++ + + L+ L+ +NL+ + ++ S L +L
Sbjct: 368 SDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 437 DLSRNKFKGFDE 448
D+S +
Sbjct: 427 DISHTHTRVAFN 438
Score = 154 bits (390), Expect = 5e-41
Identities = 85/347 (24%), Positives = 132/347 (38%), Gaps = 27/347 (7%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F F L+ L ++ I I + + L L LT N I SL F G+ +LQ+L
Sbjct: 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA-PRLFLKLSKLKSLDLSYNDIVEINPE 231
+ S+ + HL L+ L++AHN I P F L+ L+ LDLS N I I
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
Query: 232 IFKDIQELKTFK----CRSCGLENINPMMYSILADLIYLDLGYNQLKY-LLADELEDLKK 286
+ + ++ + I P + + L L L N ++ ++ L
Sbjct: 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAG 226
Query: 287 LETLLLDGNHFPVI--LEKSFSSQFK-LQVLCLKRNRLAKVT------TTAFTNLTNLIE 337
LE L F LEK S + L L ++ RLA + F LTN+
Sbjct: 227 LEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS 286
Query: 338 LDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD 397
+ ++R++ S++ L + KL LK L+ +
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFP-------TLKLKSLKRLTFTSNKGGN 339
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQDI--HNLLYQSNIKLTHLDLSRNK 442
+ P L+FL+LS N L + L +LDLS N
Sbjct: 340 AFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Score = 153 bits (389), Expect = 8e-41
Identities = 67/343 (19%), Positives = 132/343 (38%), Gaps = 25/343 (7%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ L ++ + + +G + F+ P L+ L+L+ I ++ D ++ + +L L L N
Sbjct: 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFK 234
I+S+ F LS L+ L ++ L L LK L++++N I PE F
Sbjct: 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADL----IYLDLGYNQLKYLLADELEDLKKLETL 290
++ L+ S +++I +L + + LDL N + ++ +++ +L L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205
Query: 291 LLDGNHF-PVILEKSFSSQFKLQVLCLKR------NRLAKVTTTAFTNLTNLI--ELDIS 341
L N +++ L+V L L K +A L NL E ++
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 342 YNKLDRLEVASFDPIENSLRDLKISGNNI-QLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
Y ++ ++ + I ++ D + L + + + P
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFPT 321
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
L+ L + N + + + L LDLSRN
Sbjct: 322 LKL---KSLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGL 359
Score = 146 bits (370), Expect = 2e-38
Identities = 66/339 (19%), Positives = 129/339 (38%), Gaps = 22/339 (6%)
Query: 118 HLEELHITNSFI-PAIGFHPFWGVPSLRYLNLT------HNNITSLLDYNFKGMMNLQEL 170
L +L + N+F + G+ L L N+ +G+ NL
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 171 YLDFNKIESIPS---SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVE 227
++ +F L+++ SL I ++ + + L+L +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQ 318
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL--KYLLADELEDLK 285
K ++ L + N + L L +LDL N L K +
Sbjct: 319 FPTLKLKSLKRLTFTSNK---GGNAFSEVD--LPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT-TTAFTNLTNLIELDISYNK 344
L+ L L N + + +F +L+ L + + L +++ + F +L NLI LDIS+
Sbjct: 374 SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 345 LDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFK 404
F+ + + L LK++GN+ Q + + ++ +L L L ++ + F
Sbjct: 433 TRVAFNGIFNGLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 405 MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
LQ LN++ N L+ + + ++ L + L N +
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530
Score = 141 bits (357), Expect = 2e-36
Identities = 71/361 (19%), Positives = 133/361 (36%), Gaps = 27/361 (7%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRY----LNLTHNNITSLLDYN 160
+ F +LE L ++++ I +I + + L+L+ N + +
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 196
Query: 161 FKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLA------HNRISKLAPRLFLKLS 213
FK + L +L L N ++ + L+ L V L + K L
Sbjct: 197 FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 255
Query: 214 KL--KSLDLSYNDIVEIN-PEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270
L + L+Y D + ++F + + +F S +E + +S +L+L
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVN 313
Query: 271 NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT--A 328
+ +L+ LK+L N S L+ L L RN L+ +
Sbjct: 314 CKFGQFPTLKLKSLKRLT---FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQS 368
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
T+L LD+S+N + + L L +N++ +V L L L
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 426
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD-IHNLLYQSNIKLTHLDLSRNKFKGFD 447
I+ + G+F L+ L ++GN+ Q+ ++ LT LDLS+ + +
Sbjct: 427 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486
Query: 448 E 448
Sbjct: 487 P 487
Score = 139 bits (352), Expect = 7e-36
Identities = 83/456 (18%), Positives = 162/456 (35%), Gaps = 34/456 (7%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+S L +L L+ N I + F + L V L L + + E L+
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE--LNVA 132
Query: 68 GRYEIVCRRGDMANPIP-IGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN 126
+ + + + + +DL + ++ + + + Q L ++
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT------DLRVLHQMPLLNLSLDLSL 186
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNIT-SLLDYNFKGMMNLQELYL------DFNKIES 179
+ + I F L L L +N + +++ +G+ L+ L + +E
Sbjct: 187 NPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLA---PRLFLKLSKLKSLDLSYNDIVEINPEIF-KD 235
S L +L + + LF L+ + S L I + +
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
Q L+ C+ + L L L N+ + DL LE L L N
Sbjct: 306 WQHLELVNCKFGQFPTLK------LKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRN 357
Query: 296 --HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
F +S L+ L L N + +++ F L L LD ++ L ++ S
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 354 DPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD-IPKGLFKMNPHLQFL 412
+L L IS + +++ + + L L+ L +A ++ + +F +L FL
Sbjct: 417 FLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+LS L+ + + S L L+++ N+ K +
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511
Score = 136 bits (345), Expect = 5e-35
Identities = 63/342 (18%), Positives = 121/342 (35%), Gaps = 16/342 (4%)
Query: 10 KLKSLDLSYNDI-VEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
+L L L N + + + + + L L + AL+
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR-----LVLGEFRNEGNLEKFDKSALEGLC 255
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSF 128
I R + +DL + + + F + L + N
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK 315
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESI--PSSVFM 186
P + SL+ L T N + ++ + +L+ L L N + S
Sbjct: 316 FGQF---PTLKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370
Query: 187 HLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE-IFKDIQELKTFKCR 245
+ L+ L L+ N + + FL L +L+ LD ++++ +++ +F ++ L
Sbjct: 371 GTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429
Query: 246 SCGLENINPMMYSILADLIYLDLGYNQLKY-LLADELEDLKKLETLLLDGNHFPVILEKS 304
+++ L+ L L + N + L D +L+ L L L + +
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
F+S LQVL + N+L V F LT+L ++ + N D
Sbjct: 490 FNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 135 bits (342), Expect = 2e-34
Identities = 85/420 (20%), Positives = 139/420 (33%), Gaps = 77/420 (18%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
SLDLS N + I P FK+I+ L L ++ S+ C L
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHK--------LTLRNNFDSLNVMKTCIQGLA----- 225
Query: 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHIT----- 125
G EV ++V E + L L I
Sbjct: 226 --------------------GLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265
Query: 126 -NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSV 184
+ F + ++ +L I + D+++ Q L L K P
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFP--- 320
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI--VEINPEIFKDIQELKTF 242
+ L L+ L+ N+ + L L+ LDLS N + + LK
Sbjct: 321 TLKLKSLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE-LEDLKKLETLLLDGNHFPVIL 301
G+ + + L L +LD ++ LK + L+ L L + H V
Sbjct: 379 DLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 302 EKSFSSQFKLQVLCLKRNRLAKVTTT-AFTNLTNLIELDISYNKLDRLEVASFDPIENSL 360
F+ L+VL + N + FT L NL LD+S +L++L +F+ + +SL
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL-SSL 496
Query: 361 RDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
+ L ++ N + +P G+F LQ + L N
Sbjct: 497 QVLNMASNQL-------------------------KSVPDGIFDRLTSLQKIWLHTNPWD 531
Score = 113 bits (284), Expect = 5e-27
Identities = 45/209 (21%), Positives = 82/209 (39%), Gaps = 9/209 (4%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
T++C I ++ LDL +N L++L + +L+ L L
Sbjct: 10 ITYQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
I + ++ S L L L N + + AF+ L++L +L L LE ++
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT- 125
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF----LNLS 415
L++L ++ N IQ + L L+ L ++ I ++ + L+LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
N + I ++ I+L L L N
Sbjct: 186 LNPMNFIQPGAFK-EIRLHKLTLRNNFDS 213
Score = 97.9 bits (244), Expect = 7e-22
Identities = 46/246 (18%), Positives = 87/246 (35%), Gaps = 43/246 (17%)
Query: 1 MEFTLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMC 60
+F + + LK L + N E+ L + FL L + S
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVD--------LPSLE-FLDLSRNGLS------- 360
Query: 61 ECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLE 120
C + +DL + + S F + LE
Sbjct: 361 ----------FKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-----------FLGLEQLE 399
Query: 121 ELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
L + + F + +L YL+++H + + F G+ +L+ L + N
Sbjct: 400 HLDFQHSNLKQMSEFSV--FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 178 -ESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDI 236
E+ +F L +L L L+ ++ +L+P F LS L+ L+++ N + + IF +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517
Query: 237 QELKTF 242
L+
Sbjct: 518 TSLQKI 523
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat,
glycoprotein, immune response, inflamma response, innate
immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO
MYR NAG GCS; 3.10A {Homo sapiens}
Length = 605
Score = 156 bits (397), Expect = 9e-42
Identities = 71/341 (20%), Positives = 130/341 (38%), Gaps = 25/341 (7%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
+ L ++ + + +G + F+ P L+ L+L+ I ++ D ++ + +L L L N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 178 ESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFKDI 236
+S+ F LS L+ L ++ L L LK L++++N I PE F ++
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 237 QELKTFKCRSCGLENINPMMYSILADL----IYLDLGYNQLKYLLADELEDLKKLETLLL 292
L+ S +++I +L + + LDL N + ++ +++ +L L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTL 207
Query: 293 DGNHF-PVILEKSFSSQFKLQVLCLKRNR------LAKVTTTAFTNLTNLIELDISYNKL 345
N +++ L+V L L K +A L NL + L
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267
Query: 346 DRLEVASFDPIEN--SLRDLKISGNNI-QLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
D D ++ + I ++ D + L + + + P
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD----FSYNFGWQHLELVNCKFGQFPTLK 323
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
K L F + G N +L L LDLSRN
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDL-----PSLEFLDLSRNGL 359
Score = 156 bits (396), Expect = 1e-41
Identities = 67/319 (21%), Positives = 122/319 (38%), Gaps = 16/319 (5%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
S + L+L+ N + L Y+F LQ L L +I++I + LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN-PMMYSI 259
I LA F LS L+ L ++ + ++ LK +++ P +S
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLE----TLLLDGNHFPVILEKSFSSQFKLQVLC 315
L +L +LDL N+++ + +L L ++ +L L N I +F + +L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLT 206
Query: 316 LKRNRL-AKVTTTAFTNLTNLIELDISYNKL---DRLEVASFDPIEN----SLRDLKISG 367
L+ N V T L L + + LE +E ++ + +++
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
+ L D+ ++ + L + + S+ + + + N Q L L L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLKL 324
Query: 428 QSNIKLTHLDLSRNKFKGF 446
+S +LT
Sbjct: 325 KSLKRLTFTSNKGGNAFSE 343
Score = 154 bits (391), Expect = 6e-41
Identities = 69/346 (19%), Positives = 127/346 (36%), Gaps = 22/346 (6%)
Query: 118 HLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLT------HNNITSLLDYNFKGMMNLQEL 170
L +L + N + G+ L L N+ +G+ NL
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 171 YLDFNKIESIP---SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVE 227
++ +F L+++ SL I ++ + + L+L +
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN--FGWQHLELVNCKFGQ 318
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY--LLADELEDLK 285
K ++ L + N L L +LDL N L + +
Sbjct: 319 FPTLKLKSLKRL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT-TTAFTNLTNLIELDISYNK 344
L+ L L N + + +F +L+ L + + L +++ + F +L NLI LDIS+
Sbjct: 374 SLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 345 LDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFK 404
F+ + +SL LK++GN+ Q + + ++ +L L L ++ + F
Sbjct: 433 TRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491
Query: 405 MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
LQ LN+S NN + Y+ L LD S N ++
Sbjct: 492 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 537
Score = 154 bits (390), Expect = 9e-41
Identities = 78/380 (20%), Positives = 140/380 (36%), Gaps = 41/380 (10%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNF 161
NP F L++L + + ++ P + +L+ LN+ HN I S L F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRV----LSLAHNRISKLAPRLFLKLSKLKS 217
+ NL+ L L NKI+SI + L + + L L+ N ++ + P F K +L
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHK 204
Query: 218 LDLSYNDI-VEINPEIFKDIQELKTFKCRSCGLENINPMM---YSILADLIYLDLGYNQL 273
L L N + + + + L+ + N + S L L L + +L
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264
Query: 274 KYL------LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT- 326
YL + D L + + L + + S++ Q L L + + T
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTL 322
Query: 327 ------------------TAFTNLTNLIELDISYNKLDRLEVASFDPIE-NSLRDLKISG 367
+ +L +L LD+S N L S SL+ L +S
Sbjct: 323 KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF 382
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTD-IPKGLFKMNPHLQFLNLSGNNLQDIHNLL 426
N + + + L +L+ L N +F +L +L++S + + N +
Sbjct: 383 NGV--ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440
Query: 427 YQSNIKLTHLDLSRNKFKGF 446
+ L L ++ N F+
Sbjct: 441 FNGLSSLEVLKMAGNSFQEN 460
Score = 144 bits (364), Expect = 2e-37
Identities = 69/365 (18%), Positives = 134/365 (36%), Gaps = 27/365 (7%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRY----LNLTHNNITSLLD 158
+ F +LE L ++++ I +I + + L+L+ N + +
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194
Query: 159 YNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRIS---KLAPRLFLKLSK 214
FK + L +L L N ++ + L+ L V L L L
Sbjct: 195 GAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253
Query: 215 LKSLDLSYNDIVEIN------PEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL 268
L +L + + ++ ++F + + +F S +E + +S +L+L
Sbjct: 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLEL 311
Query: 269 GYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT- 327
+ +L+ LK+L G + S L+ L L RN L+
Sbjct: 312 VNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 328 -AFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLK 386
+ T+L LD+S+N + + L L +N++ +V L L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGL--EQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424
Query: 387 ALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD-IHNLLYQSNIKLTHLDLSRNKFKG 445
L I+ + G+F L+ L ++GN+ Q+ ++ LT LDLS+ + +
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484
Query: 446 FDEKS 450
+
Sbjct: 485 LSPTA 489
Score = 143 bits (362), Expect = 5e-37
Identities = 51/271 (18%), Positives = 100/271 (36%), Gaps = 10/271 (3%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+ F + L + N + L + + N S +
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----EVDL 346
Query: 165 MNLQELYLDFNKI--ESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+L+ L L N + + S + L+ L L+ N + + FL L +L+ LD +
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQH 405
Query: 223 NDIVEINP-EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY-LLADE 280
+++ +++ +F ++ L +++ L+ L L + N + L D
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
+L+ L L L + +F+S LQVL + N + T + L +L LD
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
S N + + +SL L ++ N+
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 140 bits (356), Expect = 3e-36
Identities = 90/440 (20%), Positives = 158/440 (35%), Gaps = 51/440 (11%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
SLDLS N + I P FK+I+ L L ++ S+ C L +
Sbjct: 179 NLSLDLSLNPMNFIQPGAFKEIRLHK--------LTLRNNFDSLNVMKTCIQGLAGLEVH 230
Query: 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLT-----IGPIFQQFQHLEELHIT 125
+V + + + E +L I +F ++ +
Sbjct: 231 RLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLV 290
Query: 126 NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
+ I + F ++L L + K + L S
Sbjct: 291 SVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-----E 343
Query: 186 MHLSDLRVLSLAHNRISK--LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFK 243
+ L L L L+ N +S + + LK LDLS+N ++ + F +++L+
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLD 402
Query: 244 CRSCGLENINPM-MYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP-VIL 301
+ L+ ++ ++ L +LIYLD+ + + L LE L + GN F L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462
Query: 302 EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLR 361
F+ L L L + +L +++ TAF +L++L L++S+N L+ + + NSL+
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL-NSLQ 521
Query: 362 DLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ- 420
L S N+I S + L L FLNL+ N+
Sbjct: 522 VLDYSLNHIMTS------------------------KKQELQHFPSSLAFLNLTQNDFAC 557
Query: 421 DIHNLLYQSNIKLTHLDLSR 440
+ + IK L
Sbjct: 558 TCEHQSFLQWIKDQRQLLVE 577
Score = 126 bits (318), Expect = 3e-31
Identities = 60/344 (17%), Positives = 113/344 (32%), Gaps = 73/344 (21%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++ + S L I + + F L L++ +
Sbjct: 281 LTNVSSFSLVSVTIERVKDFSY--------NFGWQ-HLELVNCKFGQFPTLKLKSLK--- 328
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
++ + SE + L L ++ +
Sbjct: 329 -------------------RLTFTSNKGGNAFSEVDLPSLEF------------LDLSRN 357
Query: 128 FIPAIGFHP--FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES-IPSSV 184
+ G +G SL+YL+L+ N + + + NF G+ L+ L + ++ SV
Sbjct: 358 GLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSV 416
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVE-INPEIFKDIQELKTFK 243
F+ L +L L ++H +F LS L+ L ++ N E P+IF +++ L
Sbjct: 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-- 474
Query: 244 CRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEK 303
LDL QL+ L L L+ L + N+F +
Sbjct: 475 ----------------------LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNL-TNLIELDISYNKLD 346
+ LQVL N + + ++L L+++ N
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 110 bits (277), Expect = 6e-26
Identities = 45/211 (21%), Positives = 82/211 (38%), Gaps = 9/211 (4%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
T++C I ++ LDL +N L++L + +L+ L L
Sbjct: 10 ITYQCMELNFYKIPD---NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
I + ++ S L L L N + + AF+ L++L +L L LE + +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL-KT 125
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF----LNLS 415
L++L ++ N IQ + L L+ L ++ I ++ + L+LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446
N + I ++ I+L L L N
Sbjct: 186 LNPMNFIQPGAFK-EIRLHKLTLRNNFDSLN 215
Score = 109 bits (275), Expect = 1e-25
Identities = 53/299 (17%), Positives = 98/299 (32%), Gaps = 49/299 (16%)
Query: 5 LIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECAL 64
+ + L+L + K ++ L +
Sbjct: 300 FSYNFGWQHLELVNCKFGQFPTLKLKSLKR----------LTFTSNK------------- 336
Query: 65 DDRGRYEIVCRRGDMANPIPIGQMDLGT-EVLKIVPSEENPNHLT--IGPIFQQFQHLEE 121
++DL + E L + N L+
Sbjct: 337 ----------------GGNAFSEVDLPSLEFLDL---SRNGLSFKGCCSQSDFGTTSLKY 377
Query: 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN-FKGMMNLQELYLDFNKIESI 180
L ++ + + + F G+ L +L+ H+N+ + +++ F + NL L +
Sbjct: 378 LDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 181 PSSVFMHLSDLRVLSLAHNRISK-LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+ +F LS L VL +A N + P +F +L L LDLS + +++P F + L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL-KKLETLLLDGNHF 297
+ +++ Y L L LD N + EL+ L L L N F
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix,
leucine-rich repeat, protein; HET: NAG MAN; 2.70A
{Anopheles gambiae}
Length = 487
Score = 148 bits (376), Expect = 1e-39
Identities = 47/309 (15%), Positives = 108/309 (34%), Gaps = 18/309 (5%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ +T +++ L + N++EL L N + I ++ + L +L+L+ N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+ + LS L++LDL+ N + E+ ++T + + ++ S
Sbjct: 70 LYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSC---SRG 119
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQF-KLQVLCLKRN 319
+ L N++ L + +++ L L N + ++ L+ L L+ N
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
+ V L LD+S NKL + F + + + N +L ++ L
Sbjct: 180 FIYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAG-VTWISLRNN--KLVLIEKAL 233
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
L+ + + F + + ++ ++ + + T
Sbjct: 234 RFSQNLEHFDLRGNGFHCGTLRDFFSK-NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYG 292
Query: 440 RNKFKGFDE 448
+
Sbjct: 293 AYCCEDLPA 301
Score = 147 bits (373), Expect = 3e-39
Identities = 54/345 (15%), Positives = 122/345 (35%), Gaps = 20/345 (5%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ L + Q +++EL ++ + + I L LNL+ N + LD +
Sbjct: 20 SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE 77
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ L+ L L+ N ++ + + L A+N IS+++ K++ L+
Sbjct: 78 SLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCSRG---QGKKNIYLAN 129
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENIN-PMMYSILADLIYLDLGYNQLKYLLADEL 281
N I + ++ + ++ +N + + L +L+L YN + +
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KGQ 187
Query: 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341
KL+TL L N + F S + + L+ N+L + A NL D+
Sbjct: 188 VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLR 245
Query: 342 YNKLDRLEVASFDPIENSLRDLKISGNNI--QLSDVKNVLDKLVKLKALSIADMNYTDIP 399
N + F ++ + ++ + + L A D+
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFAD 305
Query: 400 KGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
+ + L+ G+ + + + +D + +++
Sbjct: 306 RLIALKRKEHALLSGQGSETERLECERENQA-RQREIDALKEQYR 349
Score = 147 bits (372), Expect = 4e-39
Identities = 60/341 (17%), Positives = 117/341 (34%), Gaps = 16/341 (4%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N L + L L + N+++ + P S+ L+ +NNI+ + +
Sbjct: 68 NVLYETLDLESLSTLRTLDLNNNYVQELLVGP-----SIETLHAANNNISRVSCSRGQ-- 120
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-APRLFLKLSKLKSLDLSYN 223
+ +YL NKI + S ++ L L N I + L L+ L+L YN
Sbjct: 121 -GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179
Query: 224 DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
I ++ ++ +LKT S L + P S A + ++ L N+L + L
Sbjct: 180 FIYDVKGQVV--FAKLKTLDLSSNKLAFMGPEFQS-AAGVTWISLRNNKLVLI-EKALRF 235
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
+ LE L GN F + F S+ +V + + + K+T T
Sbjct: 236 SQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY 294
Query: 344 KLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKG 401
+ L D + +SG + ++ + + + + Y +
Sbjct: 295 CCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQ 354
Query: 402 LFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
+ L L + + +++ +L
Sbjct: 355 VTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG 395
Score = 138 bits (350), Expect = 4e-36
Identities = 52/284 (18%), Positives = 103/284 (36%), Gaps = 39/284 (13%)
Query: 161 FKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDL 220
+ + + + ++ +S+ +++ L L+ N +S+++ +KL+ L+L
Sbjct: 6 KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65
Query: 221 SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE 280
S N + E + + L+ LDL N ++ E
Sbjct: 66 SSNVLYETLD--LESLSTLR------------------------TLDLNNNYVQ-----E 94
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
L +ETL N+ + + + L N++ + + + LD+
Sbjct: 95 LLVGPSIETLHAANNNISRVSCSRGQG---KKNIYLANNKITMLRDLDEGCRSRVQYLDL 151
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
N++D + A ++L L + N + DVK + KLK L ++ +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQYN--FIYDVKGQV-VFAKLKTLDLSSNKLAFMGP 208
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
+ +++L N L I L S L H DL N F
Sbjct: 209 EFQSA-AGVTWISLRNNKLVLIEKALRFSQ-NLEHFDLRGNGFH 250
Score = 123 bits (310), Expect = 1e-30
Identities = 49/331 (14%), Positives = 105/331 (31%), Gaps = 18/331 (5%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWG-VPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
++ L + + I + F +L +LNL +N I + L+ L
Sbjct: 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLD 197
Query: 172 LDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-P 230
L NK+ + F + + +SL +N++ + + L+ DL N
Sbjct: 198 LSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLR 255
Query: 231 EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETL 290
+ F Q ++T ++ ++ + G + L A + L L+
Sbjct: 256 DFFSKNQRVQTVAKQT--VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRK 313
Query: 291 LLDGNHFPV----ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
LE +Q + + + + + V I L+ LD
Sbjct: 314 EHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALD 373
Query: 347 RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN 406
L+ + I+L L L+A+ + + + + N
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAI-VKRYEEMYVEQQSVQNN 432
Query: 407 PHLQFLNLSGNNLQDIHNLLYQSNIKLTHLD 437
++ ++ + L + N +L L+
Sbjct: 433 A-IRDWDMYQHKETQ----LAEENARLKKLN 458
Score = 104 bits (260), Expect = 3e-24
Identities = 48/421 (11%), Positives = 131/421 (31%), Gaps = 49/421 (11%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECA 63
L+ +++L + N+I ++ + + +YL ++ +++
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRGQGKK----------NIYLANNKITMLRD------ 137
Query: 64 LDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELH 123
D + +DL + V E + LE L+
Sbjct: 138 -------------LDEGCRSRVQYLDLKLNEIDTVNFAE---------LAASSDTLEHLN 175
Query: 124 ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSS 183
+ +FI + + L+ L+L+ N + + F+ + + L NK+ I +
Sbjct: 176 LQYNFIYDVKGQVVF--AKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVLIEKA 232
Query: 184 VFMHLSDLRVLSLAHNRISKLAPR-LFLKLSKLKSLDLSYNDIVEINPEIFKD---IQEL 239
+L L N R F K +++++ + E +
Sbjct: 233 -LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHY 291
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
+ C + ++ + L ++ + L E E+ + + +
Sbjct: 292 GAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRT 350
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
++++ + L K+ L + + L L+ A+ + ++
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEE--QSP 408
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
L+ L+ + V+ + ++ + T + + ++ +L+ +
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASA 468
Query: 420 Q 420
Sbjct: 469 N 469
Score = 102 bits (255), Expect = 2e-23
Identities = 40/242 (16%), Positives = 80/242 (33%), Gaps = 39/242 (16%)
Query: 208 LFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLD 267
+ ++ K ++ + + + + + ++ LD
Sbjct: 5 IKQNGNRYKIEKVTDSSLKQALASLRQS------------------------AWNVKELD 40
Query: 268 LGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
L N L + A +L KLE L L N L+ S L+ L L N +
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----Q 93
Query: 328 AFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKA 387
++ L + N + R+ + +++ ++ N I + +++
Sbjct: 94 ELLVGPSIETLHAANNNISRVSCSRG----QGKKNIYLANNKITMLR-DLDEGCRSRVQY 148
Query: 388 LSIADMNYTDIPKG-LFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446
L + + L + L+ LNL N + D+ + + L LDLS NK
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAK--LKTLDLSSNKLAFM 206
Query: 447 DE 448
Sbjct: 207 GP 208
Score = 91.8 bits (228), Expect = 5e-20
Identities = 29/176 (16%), Positives = 67/176 (38%), Gaps = 12/176 (6%)
Query: 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLI 336
+ + ++ + + + + L S + ++ L L N L++++ T L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 337 ELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT 396
L++S N L E + + LR L ++ N +Q L ++ L A+ N +
Sbjct: 62 LLNLSSNVLY--ETLDLESLST-LRTLDLNNNYVQ------ELLVGPSIETLHAANNNIS 112
Query: 397 DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYI 452
+ + + L+ N + + +L ++ +LDL N+ +
Sbjct: 113 RVSCSRG---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding,
structural genomics, center for structural genomics,
JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Length = 636
Score = 148 bits (375), Expect = 1e-38
Identities = 62/368 (16%), Positives = 127/368 (34%), Gaps = 50/368 (13%)
Query: 96 KIVPSEENPNHLTIGPIFQQFQHLEEL-----HITNSFIPAIGFHPFWGVPSLRYLNLTH 150
+ + E+ + + ++ + ++ + + L L +
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETS----LQKMKKLGMLECLY 339
Query: 151 NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFL 210
N + L F + L L L +N+I IP++ + LS AHN++ +
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDA 398
Query: 211 -KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLG 269
+S + ++D SYN+I ++ + F + N + ++L
Sbjct: 399 KSVSVMSAIDFSYNEIGSVDGKNFDPLDPT------PFKGIN-----------VSSINLS 441
Query: 270 YNQLKYLLADELEDLKKLETLLLDGNHF---PVILEKSFSSQF----KLQVLCLKRNRLA 322
NQ+ + L ++ L GN P K + F L + L+ N+L
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501
Query: 323 KV-TTTAFTNLTNLIELDISYNKLDRL--EVASFDPIENSLRDLKISGN-----NIQLSD 374
K+ T L L+ +D+SYN + + + ++L+ I N L +
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNS----STLKGFGIRNQRDAQGNRTLRE 557
Query: 375 VKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLT 434
+ L L I + + + + P++ L++ N I I+
Sbjct: 558 WPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAG 614
Query: 435 HLDLSRNK 442
L +K
Sbjct: 615 MYMLFYDK 622
Score = 145 bits (369), Expect = 6e-38
Identities = 73/481 (15%), Positives = 157/481 (32%), Gaps = 90/481 (18%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
K + N+I ++ + + + Y+ +
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTKLRQ--------FYMGN------------------ 215
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN- 126
+P + E + SE + T + + L ++ + N
Sbjct: 216 -------------SPFV---AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259
Query: 127 ---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKG--------MMNLQELYLDFN 175
+ +P +P ++ +N+ N S +Q +Y+ +N
Sbjct: 260 PNLTKLPT----FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 176 KIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
+++ P + + L +L +N++ F KL SL+L+YN I EI
Sbjct: 316 NLKTFPVETSLQKMKKLGMLECLYNQLEGK-LPAFGSEIKLASLNLAYNQITEIPANFCG 374
Query: 235 DIQELKTFKCRSCGLENINPMMYSI--LADLIYLDLGYNQLKYLLAD-------ELEDLK 285
++++ L+ I P ++ ++ + +D YN++ +
Sbjct: 375 FTEQVENLSFAHNKLKYI-PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGI 433
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV-------TTTAFTNLTNLIEL 338
+ ++ L N ++ FS+ L + L N L ++ F N L +
Sbjct: 434 NVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSI 493
Query: 339 DISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNY--- 395
D+ +NKL +L L + +S N S LK I +
Sbjct: 494 DLRFNKLTKLSDDFRATTLPYLVGIDLSYN--SFSKFPTQPLNSSTLKGFGIRNQRDAQG 551
Query: 396 ----TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSY 451
+ P+G+ P L L + N+++ ++ + + ++ LD+ N D
Sbjct: 552 NRTLREWPEGITLC-PSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLSYV 607
Query: 452 I 452
Sbjct: 608 C 608
Score = 133 bits (337), Expect = 1e-33
Identities = 59/372 (15%), Positives = 134/372 (36%), Gaps = 40/372 (10%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDY 159
+P +I + ++ + +F+ + LR + ++ +
Sbjct: 169 DPQQKSIKKSSRITLKDTQIGQLSNNITFVSK----AVMRLTKLRQFYMGNSPFVAENIC 224
Query: 160 NFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLD 219
N + + ++ + +L DL + + + P L +++ ++
Sbjct: 225 EAWENENSEYA----QQYKTEDLK-WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279
Query: 220 LSYNDIVEI--------NPEIFKDIQELKTFKCRSCGLENINPMMYSI--LADLIYLDLG 269
++ N + ++++ L+ P+ S+ + L L+
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF-PVETSLQKMKKLGMLECL 338
Query: 270 YNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV-TTTA 328
YNQL+ L KL +L L N I +++ L N+L +
Sbjct: 339 YNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD 397
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIEN------SLRDLKISGNNIQLSDVKNVLDKL 382
+++ + +D SYN++ ++ +FDP++ ++ + +S N I K +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTG 456
Query: 383 VKLKALSIADMNYTDIPKGLFKMNP-------HLQFLNLSGNNLQDIHNLLYQSNI-KLT 434
L ++++ T+IPK K L ++L N L + + + + L
Sbjct: 457 SPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV 516
Query: 435 HLDLSRNKFKGF 446
+DLS N F F
Sbjct: 517 GIDLSYNSFSKF 528
Score = 119 bits (300), Expect = 7e-29
Identities = 57/354 (16%), Positives = 113/354 (31%), Gaps = 40/354 (11%)
Query: 118 HLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNIT----SLLDYNFKGMMNLQELYLD 173
LE + AIG + L L L + M+ ++
Sbjct: 87 SLEGFGASGRVPDAIG-----QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM 141
Query: 174 FNKIE--SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
+ + SDL + + K + K + N+I ++
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201
Query: 232 IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLL 291
+ + + +L+ F + N + Y Q + ++LK L +
Sbjct: 202 VMR-LTKLRQFYMGNSPFVAENI-----CEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255
Query: 292 LDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTT--------TAFTNLTNLIELDISYN 343
+ L + ++Q++ + NR + + I YN
Sbjct: 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN 315
Query: 344 KLDRLEVASFDPIENSLRDLK------ISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD 397
L P+E SL+ +K N QL +KL +L++A T+
Sbjct: 316 NLKTF------PVETSLQKMKKLGMLECLYN--QLEGKLPAFGSEIKLASLNLAYNQITE 367
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI-KLTHLDLSRNKFKGFDEKS 450
IP ++ L+ + N L+ I N+ ++ ++ +D S N+ D K+
Sbjct: 368 IPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421
Score = 115 bits (291), Expect = 9e-28
Identities = 52/342 (15%), Positives = 98/342 (28%), Gaps = 92/342 (26%)
Query: 105 NHLTIGP--IFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDY 159
N +T P + +E L + +IP I V + ++ ++N I S+
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD--AKSVSVMSAIDFSYNEIGSVDGK 420
Query: 160 NFKGM-------MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL-------A 205
NF + +N+ + L N+I P +F S L ++L N ++++
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
F L S+DL +N + +++ + L L+
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRA------------TTLPY-----------LVG 517
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325
+DL YN + + L+ + + NR +
Sbjct: 518 IDLSYNSFSKF-PTQPLNSSTLKGFGIRNQ------------------RDAQGNRTLREW 558
Query: 326 TTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKL 385
T +L +L I N + ++ ++ L I N
Sbjct: 559 PEGITLCPSLTQLQIGSNDIRKVNEKIT----PNISVLDIKDNPN--------------- 599
Query: 386 KALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
I L + QDI
Sbjct: 600 ----------ISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDA 631
Score = 88.6 bits (220), Expect = 7e-19
Identities = 41/274 (14%), Positives = 80/274 (29%), Gaps = 36/274 (13%)
Query: 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSC 247
+ LSL S P +L++L+ L L +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFG-------------- 125
Query: 248 GLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSS 307
+ I+ M + + + Y ED L ++ + ++KS
Sbjct: 126 -PKGISANMSDEQKQKMRMHYQKTFVDYD---PREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 308 QFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISG 367
K + N + V + A LT L + + + + + S
Sbjct: 182 TLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYMGNSPFV-------AENICEAWENENSE 233
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNY-TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLL 426
Q D L L + + + T +P L + P +Q +N++ N L
Sbjct: 234 YAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL-PEMQLINVACNRGISGEQLK 292
Query: 427 YQSNI--------KLTHLDLSRNKFKGFDEKSYI 452
K+ + + N K F ++ +
Sbjct: 293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL 326
Score = 60.4 bits (147), Expect = 6e-10
Identities = 20/145 (13%), Positives = 41/145 (28%), Gaps = 19/145 (13%)
Query: 105 NHLTIGP---IFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTH------NN 152
N LT +L + ++ S P +L+ + + N
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQ----PLNSSTLKGFGIRNQRDAQGNR 553
Query: 153 ITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKL 212
+L +L + N I + + ++ VL + N +
Sbjct: 554 TLREWPEGITLCPSLTQLQIGSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPY 610
Query: 213 SKLKSLDLSYNDIVEINPEIFKDIQ 237
+ L Y+ +I DI+
Sbjct: 611 IEAGMYMLFYDKTQDIRGCDALDIK 635
Score = 53.5 bits (129), Expect = 1e-07
Identities = 21/167 (12%), Positives = 49/167 (29%), Gaps = 7/167 (4%)
Query: 280 ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAF----TNLTNL 335
L ++ L L+G + + +L+VL L + + +
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 336 IELDISYNKLDRLEVASFDPIENS-LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMN 394
+ + V + S L I+ + Q S +K +K + N
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS-IKKSSRITLKDTQIGQLSNN 194
Query: 395 YTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
T + K + ++ L+ + + + N + +
Sbjct: 195 ITFVSKAVMRL-TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240
Score = 50.4 bits (121), Expect = 9e-07
Identities = 19/149 (12%), Positives = 42/149 (28%), Gaps = 9/149 (6%)
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDL 363
S +S ++ L L+ + A LT L L + + E ++
Sbjct: 76 SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSD 135
Query: 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIH 423
+ +++ K +D + + P K + L + +
Sbjct: 136 EQK-QKMRMHYQKTFVDYDPREDFSDLIKDCINSDP--QQKSIKKSSRITLKDTQIGQLS 192
Query: 424 NLLYQ--SNI----KLTHLDLSRNKFKGF 446
N + + KL + + F
Sbjct: 193 NNITFVSKAVMRLTKLRQFYMGNSPFVAE 221
Score = 50.4 bits (121), Expect = 9e-07
Identities = 19/117 (16%), Positives = 36/117 (30%), Gaps = 10/117 (8%)
Query: 105 NHLT-IGPIFQQFQHLEELHITNSFIPA----IGFHP--FWGVPSLRYLNLTHNNITSLL 157
N + L+ I N + P PSL L + N+I +
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582
Query: 158 DYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
+ N+ L + N SI S + + L +++ + L + +
Sbjct: 583 EKITP---NISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636
Score = 27.7 bits (62), Expect = 9.9
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFK 30
+F + L +DLSYN + +
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLN 534
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell
WALL attached, leucine rich repeat; 1.5A {Listeria
monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A*
1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Length = 466
Score = 144 bits (365), Expect = 4e-38
Identities = 72/348 (20%), Positives = 130/348 (37%), Gaps = 33/348 (9%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ + + + + + + L I S+ +
Sbjct: 10 QDTPINQIFTDTALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKSI--DGVE 65
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ NL ++ N++ I +L+ L + + +N+I+ + P L+ L L L
Sbjct: 66 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE 282
N I +I+P K++ L + S + +I+ + S L L L G L
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISDISAL--SGLTSLQQLSFGNQVTDLK---PLA 174
Query: 283 DLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY 342
+L LE L + N I + L+ L N+++ + T LTNL EL ++
Sbjct: 175 NLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNG 230
Query: 343 NKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
N+L + + +L DL ++ N I S++ L L KL L + ++I
Sbjct: 231 NQLK-----DIGTLASLTNLTDLDLANNQI--SNLAP-LSGLTKLTELKLGANQISNISP 282
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
L L L+ N L+DI + + LT+L L N
Sbjct: 283 --LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDISP 326
Score = 143 bits (364), Expect = 4e-38
Identities = 73/346 (21%), Positives = 141/346 (40%), Gaps = 33/346 (9%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+ + +L +++ +N+ + I P + L + + +N I + +
Sbjct: 56 LGIKSIDGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANL 111
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
NL L L N+I I +L++L L L+ N IS ++ L+ L+ L
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA--LSGLTSLQQLSFGNQ- 166
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ ++ P ++ L+ S + +I+ + + L +L L NQ+ + L L
Sbjct: 167 VTDLKP--LANLTTLERLDISSNKVSDISVL--AKLTNLESLIATNNQISDI--TPLGIL 220
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
L+ L L+GN I + +S L L L N+++ + + LT L EL + N+
Sbjct: 221 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL--APLSGLTKLTELKLGANQ 276
Query: 345 LDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
+ + P+ +L +L+++ N QL D+ + L L L++ N +DI
Sbjct: 277 IS-----NISPLAGLTALTNLELNEN--QLEDISP-ISNLKNLTYLTLYFNNISDISP-- 326
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
LQ L N + D+ +L + + L N+
Sbjct: 327 VSSLTKLQRLFFYNNKVSDVSSL--ANLTNINWLSAGHNQISDLTP 370
Score = 142 bits (359), Expect = 2e-37
Identities = 82/358 (22%), Positives = 139/358 (38%), Gaps = 33/358 (9%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N +T + +L L ++++ I G+ SL+ L+ N +T L +
Sbjct: 122 NQITDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLK--PLANL 176
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L+ L + NK+ I L++L L +N+IS + P L+ L L L+ N
Sbjct: 177 TTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQ 232
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ +I + L + + N+ P+ L L L LG NQ+ + L L
Sbjct: 233 LKDIGT--LASLTNLTDLDLANNQISNLAPLSG--LTKLTELKLGANQISNI--SPLAGL 286
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
L L L+ N I S+ L L L N ++ ++ ++LT L L NK
Sbjct: 287 TALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNK 342
Query: 345 LDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
+ + N ++ L N I SD+ L L ++ L + D +T+ P
Sbjct: 343 VS-----DVSSLANLTNINWLSAGHNQI--SDLTP-LANLTRITQLGLNDQAWTNAPVNY 394
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNI-KLTHLDLSRNKFKGFDEKSYIMSEPKNI 459
++ N N + S+ T D++ N +E SY S+P I
Sbjct: 395 KA---NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTI 449
Score = 125 bits (316), Expect = 2e-31
Identities = 67/313 (21%), Positives = 121/313 (38%), Gaps = 22/313 (7%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N +T LE L I+++ + I + +L L T+N I+ + +
Sbjct: 165 NQVTDLKPLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDIT--PLGIL 220
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
NL EL L+ N+++ I + L++L L LA+N+IS LAP L+KL L L N
Sbjct: 221 TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 276
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
I I+P + L + LE+I+P+ S L +L YL L +N + + + L
Sbjct: 277 ISNISP--LAGLTALTNLELNENQLEDISPI--SNLKNLTYLTLYFNNISDI--SPVSSL 330
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
KL+ L N + S ++ + L N+++ +T NLT + +L ++
Sbjct: 331 TKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGLNDQA 386
Query: 345 LDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFK 404
V ++ N + I + + +
Sbjct: 387 WTNAPVNYK----ANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYT 442
Query: 405 MNPHLQFLNLSGN 417
+ + +
Sbjct: 443 FSQPVTIGKGTTT 455
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid,
MD-2, LPS, glycoprotein response, inflammatory response,
innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens}
PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Length = 276
Score = 138 bits (350), Expect = 1e-37
Identities = 58/295 (19%), Positives = 98/295 (33%), Gaps = 79/295 (26%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
S + L+L+ N + L Y+F LQ L L +I++I + LS L L L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I LA F LS L+ L ++ + L
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI------------------------GHL 123
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
L L++ +N ++ L + FS+ L+ L L N+
Sbjct: 124 KTLKELNVAHNLIQSF-----------------------KLPEYFSNLTNLEHLDLSSNK 160
Query: 321 LAKVTTTAFTNLTNL----IELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVK 376
+ + T L + + LD+S N ++ ++ +F I L++L + N +
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI--RLKELALDTNQL------ 212
Query: 377 NVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ-DIHNLLYQSN 430
+P G+F LQ + L N + Y S
Sbjct: 213 -------------------KSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR 248
Score = 129 bits (327), Expect = 2e-34
Identities = 53/230 (23%), Positives = 99/230 (43%), Gaps = 30/230 (13%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
+ L ++ + + +G + F+ P L+ L+L+ I ++ D ++ + +L L L N I+
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEI-NPEIFKDIQ 237
S+ F LS L+ L ++ L L LK L++++N I PE F ++
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE----TLLLD 293
L+ +LDL N+++ + +L L ++ +L L
Sbjct: 150 NLE------------------------HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
N I +F +L+ L L N+L V F LT+L ++ + N
Sbjct: 186 LNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 125 bits (317), Expect = 4e-33
Identities = 51/281 (18%), Positives = 88/281 (31%), Gaps = 80/281 (28%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + L L FN + + S F +L+VL L+ I + + LS L +L L+ N I
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+ F L+ L L L L + LK
Sbjct: 89 QSLALGAFSG------------------------LSSLQKLVAVETNLASLENFPIGHLK 124
Query: 286 KLETLLLDGNHFPVI-LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNL----IELDI 340
L+ L + N L + FS+ L+ L L N++ + T L + + LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
S N ++ ++ +F
Sbjct: 185 SLNPMNFIQPGAFK---------------------------------------------- 198
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
L+ L L N L+ + + ++ L + L N
Sbjct: 199 -----EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
Score = 110 bits (277), Expect = 2e-27
Identities = 47/209 (22%), Positives = 84/209 (40%), Gaps = 9/209 (4%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
T++C I P ++ LDL +N L++L + +L+ L L
Sbjct: 10 ITYQCMELNFYKI-PD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT 66
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
I + ++ S L L L N + + AF+ L++L +L L LE +
Sbjct: 67 IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG-HLKT 125
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQF----LNLS 415
L++L ++ N IQ + L L+ L ++ I ++ + L+LS
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
N + I ++ I+L L L N+ K
Sbjct: 186 LNPMNFIQPGAFK-EIRLKELALDTNQLK 213
Score = 89.6 bits (223), Expect = 3e-20
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 8/144 (5%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNF 161
N + F L++L + + ++ P + +L+ LN+ HN I S L F
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRV----LSLAHNRISKLAPRLFLKLSKLKS 217
+ NL+ L L NKI+SI + L + + L L+ N ++ + P F ++ +LK
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKE 204
Query: 218 LDLSYNDIVEINPEIFKDIQELKT 241
L L N + + IF + L+
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQK 228
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex,
leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A
{Homo sapiens} PDB: 1xwd_C*
Length = 350
Score = 130 bits (329), Expect = 4e-34
Identities = 40/256 (15%), Positives = 87/256 (33%), Gaps = 31/256 (12%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN-FKGMMNLQELYL-D 173
++ EL + + I F G L + ++ N++ +++ + F + L E+ +
Sbjct: 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 174 FNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND-IVEINPEI 232
N + I F +L +L+ L +++ I L + + LD+ N I I
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
F + + L L N ++ + + E L
Sbjct: 149 FVGLSFE-----------------------SVILWLNKNGIQEIHNSAFNGTQLDELNLS 185
Query: 293 DGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
D N+ + F +L + R R+ + + NL L K ++ +
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPT 241
Query: 353 FDPIENSLRDLKISGN 368
+ + L + ++
Sbjct: 242 LEKLVA-LMEASLTYP 256
Score = 118 bits (296), Expect = 1e-29
Identities = 59/308 (19%), Positives = 107/308 (34%), Gaps = 38/308 (12%)
Query: 113 FQQFQHLEELHITNSFIP-AIGFHPFWGVPSLRYLNLTH-NNITSLLDYNFKGMMNLQEL 170
F F LE++ I+ + + I F +P L + + NN+ + F+ + NLQ L
Sbjct: 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHN-RISKLAPRLFLKLS-KLKSLDLSYNDIVEI 228
+ I+ +P +H +L + N I + F+ LS + L L+ N I EI
Sbjct: 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE 288
+ F Q + + LE + ++ + + LD+ ++ L + LE+LKKL
Sbjct: 170 HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLR 229
Query: 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN----- 343
L L+E ++Y
Sbjct: 230 ARSTYNLK----------------------------KLPTLEKLVALMEASLTYPSHCCA 261
Query: 344 -KLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
R +++ PI N + Q ++ L + + DM YT+ L
Sbjct: 262 FANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDL 321
Query: 403 FKMNPHLQ 410
+
Sbjct: 322 CNEVVDVT 329
Score = 111 bits (278), Expect = 3e-27
Identities = 42/280 (15%), Positives = 99/280 (35%), Gaps = 55/280 (19%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + +K+ IPS + + L ++ + F L+ +++S ND+
Sbjct: 10 SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66
Query: 226 VE-INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+E I ++F ++ +L I + N L Y+ + ++L
Sbjct: 67 LEVIEADVFSNLPKLHE----------------------IRI-EKANNLLYINPEAFQNL 103
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN-RLAKVTTTAFTNLT-NLIELDISY 342
L+ LL+ + + + +L ++ N + + +F L+ + L ++
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163
Query: 343 NKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGL 402
N + + ++F+ L +L +S NN N ++P +
Sbjct: 164 NGIQEIHNSAFNGT--QLDELNLSDNN------------------------NLEELPNDV 197
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
F L++S + + + ++ KL K
Sbjct: 198 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237
Score = 96.1 bits (239), Expect = 6e-22
Identities = 35/173 (20%), Positives = 69/173 (39%), Gaps = 8/173 (4%)
Query: 103 NPNHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNN-ITSLLDY 159
N+L FQ +L+ L I+N+ I + L++ N I ++
Sbjct: 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147
Query: 160 NFKGMM-NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSL 218
+F G+ L+L+ N I+ I +S F + +N + +L +F S L
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207
Query: 219 DLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
D+S I + +++++L+ + L+ + + L L+ L Y
Sbjct: 208 DISRTRIHSLPSYGLENLKKLRARS--TYNLKKLPTL--EKLVALMEASLTYP 256
Score = 64.1 bits (156), Expect = 2e-11
Identities = 52/289 (17%), Positives = 97/289 (33%), Gaps = 46/289 (15%)
Query: 8 MSKLKSLDLSYNDIVE-INPEIFKDIQD-TTMLFQVTIFLYLLHSSASVMCP-----YMC 60
L+ +++S ND++E I ++F ++ + + L ++ A P +
Sbjct: 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLIS 112
Query: 61 ECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGP-IFQQFQHL 119
+ +P + ++ ++N N TI F
Sbjct: 113 NTGIKH----------------LPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFE 155
Query: 120 -EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L + + I I F G +NN+ L + F G L + +I
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN-----------DIVE 227
S+PS +L LR S + KL KL L L+Y I E
Sbjct: 216 SLPSYGLENLKKLRARST--YNLKKLPT--LEKLVALMEASLTYPSHCCAFANWRRQISE 271
Query: 228 INP-----EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
++P + +++ + + + L N YS D+ Y + Y+
Sbjct: 272 LHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYD 320
Score = 38.7 bits (90), Expect = 0.003
Identities = 29/242 (11%), Positives = 71/242 (29%), Gaps = 25/242 (10%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIF--LYLLHSSASVMCPYMCECALD 65
+ L+ L +S I + + + I + + + E +
Sbjct: 103 LPNLQYLLISNTGIKHLPDVHK---IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVIL 159
Query: 66 DRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGP--IFQQFQHLEELH 123
+ I N + +++L + N+L P +F L
Sbjct: 160 WLNKNGIQEIHNSAFNGTQLDELNL-----------SDNNNLEELPNDVFHGASGPVILD 208
Query: 124 ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSS 183
I+ + I ++ + + LR + N+ L + ++ L E L + S +
Sbjct: 209 ISRTRIHSLPSYGLENLKKLRARST--YNLKKLP--TLEKLVALMEASLTYP---SHCCA 261
Query: 184 VFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFK 243
+ L N+ ++ ++ + L+ ++ + E
Sbjct: 262 FANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGFDMTYTEFDYDL 321
Query: 244 CR 245
C
Sbjct: 322 CN 323
Score = 29.8 bits (67), Expect = 2.3
Identities = 31/225 (13%), Positives = 60/225 (26%), Gaps = 45/225 (20%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+ L L+ N I EI+ F Q + L L +
Sbjct: 153 SFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV--------------- 197
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN- 126
+D+ + +PS + + L N
Sbjct: 198 -----------FHGASGPVILDISRTRIHSLPSY----------GLENLKKLRARSTYNL 236
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFM 186
+P + +L +LT+ S + EL+ NK +M
Sbjct: 237 KKLP-----TLEKLVALMEASLTYP---SHCCAFANWRRQISELHPICNKSILRQEVDYM 288
Query: 187 HLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPE 231
+ + SLA + S + + ++ + V +P+
Sbjct: 289 TQARGQRSSLAEDNESSYSRGFDMTYTEFDYDLCNEVVDVTCSPK 333
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR,
immune system; 2.50A {Eptatretus burgeri}
Length = 270
Score = 127 bits (320), Expect = 2e-33
Identities = 58/209 (27%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
+P + L+L N ++SL F + L+ LYL+ NK++++P+ +F L +L L +
Sbjct: 34 NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
N++ L +F +L L L L N + + P +F
Sbjct: 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS---------------------- 131
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLK 317
L L YL LGYN+L+ L + L L+ L L N + E +F +L+ L L
Sbjct: 132 --LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189
Query: 318 RNRLAKVTTTAFTNLTNLIELDISYNKLD 346
N+L +V AF +L L L + N D
Sbjct: 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 122 bits (308), Expect = 8e-32
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 25/203 (12%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ ++L L NK+ S+PS F L+ LR+L L N++ L +F +L L++L ++ N +
Sbjct: 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+ +F L +L L L NQLK L + L
Sbjct: 98 QALPIGVFDQ------------------------LVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
KL L L N + + F L+ L L N+L +V AF LT L L + N+L
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 346 DRLEVASFDPIENSLRDLKISGN 368
R+ +FD +E L+ L++ N
Sbjct: 194 KRVPEGAFDSLE-KLKMLQLQEN 215
Score = 113 bits (285), Expect = 1e-28
Identities = 51/159 (32%), Positives = 82/159 (51%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
F + LR L L N + +L FK + NL+ L++ NK++++P VF L +L L L
Sbjct: 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM 256
N++ L PR+F L+KL L L YN++ + +F + LK + + L+ +
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGA 176
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
+ L +L L L NQLK + + L+KL+ L L N
Sbjct: 177 FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 109 bits (275), Expect = 3e-27
Identities = 57/184 (30%), Positives = 78/184 (42%), Gaps = 4/184 (2%)
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
I AD LDL N+L L + L KL L L+ N + F L+ L +
Sbjct: 35 IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ-LSDVKN 377
N+L + F L NL EL + N+L L FD + L L + N +Q L
Sbjct: 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK-LTYLSLGYNELQSLPK--G 151
Query: 378 VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLD 437
V DKL LK L + + +P+G F L+ L L N L+ + + S KL L
Sbjct: 152 VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQ 211
Query: 438 LSRN 441
L N
Sbjct: 212 LQEN 215
Score = 78.9 bits (195), Expect = 1e-16
Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 4/135 (2%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
+ L L+ N+L+ + + AF LT L L ++ NKL L F ++N L L ++ N
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN-LETLWVTDN-- 95
Query: 371 QLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+L + V D+LV L L + +P +F L +L+L N LQ + ++
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 430 NIKLTHLDLSRNKFK 444
L L L N+ K
Sbjct: 156 LTSLKELRLYNNQLK 170
Score = 40.7 bits (96), Expect = 5e-04
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Query: 103 NPNHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
N L P +F + L+EL + N+ + + F + L+ L L +N + + +
Sbjct: 141 GYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200
Query: 161 FKGMMNLQELYLDFN 175
F + L+ L L N
Sbjct: 201 FDSLEKLKMLQLQEN 215
Score = 31.5 bits (72), Expect = 0.57
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
T IP + + L+L N L + + + KL L L+ NK
Sbjct: 29 TAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK 72
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder,
asparagine ladder, virulence factor, solenoid, cell
WALL; 2.70A {Listeria monocytogenes}
Length = 457
Score = 127 bits (322), Expect = 2e-32
Identities = 65/345 (18%), Positives = 114/345 (33%), Gaps = 41/345 (11%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+ +T ++ L +L T++ I + +L YL N +T+L + +
Sbjct: 52 SSITDMTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPL 105
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L L D NK+ + S L L+ A N ++++ ++L LD N
Sbjct: 106 TKLTYLNCDTNKLTKLDVS---QNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNK 159
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ +L T C + ++ S L L+ N + L +L
Sbjct: 160 KITKLD--VTPQTQLTTLDCSFNKITELDV---SQNKLLNRLNCDTNNITKL---DLNQN 211
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
+L L N I + +L N L T + L+ L L
Sbjct: 212 IQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTD 265
Query: 345 LDRLEVASFDPIENSLRDLKISGNN-IQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
L +++ L + G I+ DV + +L L T++
Sbjct: 266 LLEIDLTHN----TQLIYFQAEGCRKIKELDVTH----NTQLYLLDCQAAGITELD---L 314
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
NP L +L L+ L ++ N KL L + F
Sbjct: 315 SQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSS 356
Score = 117 bits (295), Expect = 8e-29
Identities = 51/310 (16%), Positives = 99/310 (31%), Gaps = 38/310 (12%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ + + + + + L L + I + L+ L L N
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG--IEKLTGLTKLICTSNN 75
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I+ L + + L L N + ++ + +L C + L ++ S
Sbjct: 76 ITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDV---SQN 126
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
L YL+ N L + ++ +L L N I + + Q +L L N+
Sbjct: 127 PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNK 181
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD 380
+ T + L L+ N + +L++ L L S N + DV
Sbjct: 182 I---TELDVSQNKLLNRLNCDTNNITKLDLNQN----IQLTFLDCSSNKLTEIDVTP--- 231
Query: 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI--------HNLLYQSNIK 432
L +L + T++ L L+ +L +I + K
Sbjct: 232 -LTQLTYFDCSVNPLTELDVSTL---SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287
Query: 433 LTHLDLSRNK 442
+ LD++ N
Sbjct: 288 IKELDVTHNT 297
Score = 101 bits (253), Expect = 3e-23
Identities = 56/330 (16%), Positives = 102/330 (30%), Gaps = 55/330 (16%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
L EL + I L L+ + N IT L + L L
Sbjct: 144 VSHNTQLTELDCHLNKK--ITKLDVTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNC 198
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
D N I + + L L + N+++++ L++L D S N + E++
Sbjct: 199 DTNNITKLDLN---QNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLTELDV-- 250
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
S L+ L L L + +L +L
Sbjct: 251 -------------------------STLSKLTTLHCIQTDLLEI---DLTHNTQLIYFQA 282
Query: 293 DGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
+G I E + +L +L + + T + L+ L ++ +L L+V+
Sbjct: 283 EGCRK--IKELDVTHNTQLYLLDCQAAGI---TELDLSQNPKLVYLYLNNTELTELDVSH 337
Query: 353 FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFL 412
L+ L + D + + K+ L A+ +PK N +
Sbjct: 338 N----TKLKSLSCVNA--HIQDF-SSVGKIPALNNNFEAEGQTITMPKETLTNN--SLTI 388
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
+S + L N + D + N
Sbjct: 389 AVSPDLLDQFGNPMNIEPGDGGVYDQATNT 418
Score = 50.8 bits (122), Expect = 5e-07
Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 13/120 (10%)
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSI 390
N + + D + +L L ++I +D+ ++KL L L
Sbjct: 19 NFASEVAAAFEMQATDTISEEQL----ATLTSLDCHNSSI--TDMTG-IEKLTGLTKLIC 71
Query: 391 ADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
N T + N +L +L N L ++ KLT+L+ NK D
Sbjct: 72 TSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLDVSQ 125
Score = 49.3 bits (118), Expect = 2e-06
Identities = 28/218 (12%), Positives = 55/218 (25%), Gaps = 52/218 (23%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+++L D S N + E++ + L+ + +
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTT----------LHCIQT----------------- 264
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+ ++DL I E + + L L +
Sbjct: 265 ----------------DLLEIDLTHNTQLIYFQAEGCRKIKELDV-THNTQLYLLDCQAA 307
Query: 128 FIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
I + P L YL L + +T L + L+ L I+ S
Sbjct: 308 GITEL---DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFSS--VGK 359
Query: 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ L A + + S ++ D
Sbjct: 360 IPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQ 397
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 124 bits (312), Expect = 1e-31
Identities = 58/253 (22%), Positives = 95/253 (37%), Gaps = 56/253 (22%)
Query: 47 LLHSSASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNH 106
L + V CP C CA + + C + + N +P + T +L + + N+
Sbjct: 3 LASGRSVVSCPANCLCASN-----ILSCSKQQLPN-VPQS-LPSYTALLDL-----SHNN 50
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMN 166
L+ + A + +L L L+HN++ + F + N
Sbjct: 51 LSR-------------------LRAEWT--PTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIV 226
L+ L L N + ++ +F L L VL L +N I + F +++L+ L LS N I
Sbjct: 90 LRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKK 286
E+ KD +L L+ LDL N+LK L +L+ L
Sbjct: 150 RFPVELIKDGNKLPK---------------------LMLLDLSSNKLKKLPLTDLQKLPA 188
Query: 287 L--ETLLLDGNHF 297
L L N
Sbjct: 189 WVKNGLYLHNNPL 201
Score = 98.4 bits (245), Expect = 1e-22
Identities = 60/280 (21%), Positives = 93/280 (33%), Gaps = 78/280 (27%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRL-FLKLSKLKSLDLSYND 224
L ++ ++P S+ S +L L+HN +S+L +L+ L SL LS+N
Sbjct: 19 ASNILSCSKQQLPNVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ I+ E F + L+ YLDL N L L DL
Sbjct: 76 LNFISSEAFVPVPNLR------------------------YLDLSSNHLHTLDEFLFSDL 111
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
+ LE LLL NH + V AF ++ L +L +S N+
Sbjct: 112 QALEVLLLYNNH------------------------IVVVDRNAFEDMAQLQKLYLSQNQ 147
Query: 345 LDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFK 404
+ R V +KL KL L ++ +P +
Sbjct: 148 ISRFPVELIKD-----------------------GNKLPKLMLLDLSSNKLKKLPLTDLQ 184
Query: 405 MNPHL--QFLNLSGNNLQ-DIHNLLYQSNIKLTHLDLSRN 441
P L L N L+ D S+ + L +
Sbjct: 185 KLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMD 224
Score = 89.9 bits (223), Expect = 7e-20
Identities = 41/162 (25%), Positives = 60/162 (37%), Gaps = 30/162 (18%)
Query: 287 LETLLLDGNHFPVIL-EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
L L N+ + E + + L L L N L +++ AF + NL LD+S N L
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
Query: 346 DRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKM 405
L+ F ++ L L + N+I + + F+
Sbjct: 101 HTLDEFLFSDLQA-LEVLLLYNNHIV-------------------------VVDRNAFED 134
Query: 406 NPHLQFLNLSGNNLQDIHNLLYQSNIKLTHL---DLSRNKFK 444
LQ L LS N + L + KL L DLS NK K
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
Score = 74.9 bits (184), Expect = 8e-15
Identities = 33/139 (23%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 311 LQVLCLKRNRLAKVTT-TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
+L L N L+++ T LTNL L +S+N L+ + +F P+ N LR L +S N+
Sbjct: 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN-LRYLDLSSNH 99
Query: 370 IQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+ + + LF L+ L L N++ + ++
Sbjct: 100 L-------------------------HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED 134
Query: 430 NIKLTHLDLSRNKFKGFDE 448
+L L LS+N+ F
Sbjct: 135 MAQLQKLYLSQNQISRFPV 153
Score = 61.4 bits (149), Expect = 2e-10
Identities = 21/87 (24%), Positives = 38/87 (43%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
+ + L +S NN+ + +L L +L ++ + I F P+L++L+LS
Sbjct: 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNK 442
N+L + L+ L L L N
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNH 123
Score = 29.0 bits (65), Expect = 3.6
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L+ LDLS N + ++ +F D
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSD 110
Score = 28.7 bits (64), Expect = 4.6
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTML 38
M++L+ L LS N I E+ KD L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKL 165
Score = 28.7 bits (64), Expect = 4.8
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ L+ L L N IV ++ F+D
Sbjct: 111 LQALEVLLLYNNHIVVVDRNAFED 134
Score = 27.9 bits (62), Expect = 7.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 2 EFTLIFMSKLKSLDLSYNDIVEINPEIFKD 31
E+T ++ L SL LS+N + I+ E F
Sbjct: 57 EWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich
RE receptor-like kinases, leucine-rich repeat; HET: NAG
BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A*
3rj0_A*
Length = 768
Score = 126 bits (318), Expect = 6e-31
Identities = 76/362 (20%), Positives = 134/362 (37%), Gaps = 45/362 (12%)
Query: 108 TIGPIFQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLL--DYNFKGM 164
+ LE L ++ + ++ F SL L+L+ N+++ + +
Sbjct: 68 AVSSSLLSLTGLESLFLSNSHINGSV--SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125
Query: 165 MNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAP---RLFLKLSKLKSLDL 220
L+ L + N ++ S + L+ L VL L+ N IS L +LK L +
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185
Query: 221 SYNDIVEINPEI-FKDIQELKTFKCRSCGLENINPMMYSI--LADLIYLDLGYNQLKYLL 277
S N +I+ ++ L+ S P + + L +LD+ N+L
Sbjct: 186 SGN---KISGDVDVSRCVNLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDF 239
Query: 278 ADELEDLKKLETLLLDGNHFP-VILEKSFSSQFKLQVLCLKRNRLA-KVTTTAFTNLTNL 335
+ + +L+ L + N F I S LQ L L N+ ++ L
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 336 IELDISYNKLDRLEVASFDPIENS------LRDLKISGNNIQLSDVKNVLDKLVKLKALS 389
LD+S N + + L L +S NN + L K+ LK L
Sbjct: 297 TGLDLSGNHF-------YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349
Query: 390 IADMNYTD-IPKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQSNIKLTHLDLSRNKF 443
++ ++ +P+ L ++ L L+LS NN ++ + L L L N F
Sbjct: 350 LSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT---LQELYLQNNGF 406
Query: 444 KG 445
G
Sbjct: 407 TG 408
Score = 122 bits (309), Expect = 7e-30
Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 42/362 (11%)
Query: 105 NHLTIGPI-FQQFQHLEELHI-TNSF---IPAIGFHPFWGVPSLRYLNLTHNNITSLLDY 159
N ++ G + + +LE L + +N+F IP +G +L++L+++ N ++
Sbjct: 188 NKIS-GDVDVSRCVNLEFLDVSSNNFSTGIPFLG-----DCSALQHLDISGNKLSGDFSR 241
Query: 160 NFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRIS-KLAPRLFLKLSKLKS 217
L+ L + N+ IP L L+ LSLA N+ + ++ L L
Sbjct: 242 AISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTG 298
Query: 218 LDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLE-NINPMMYSILADLIYLDLGYNQLKY 275
LDLS N + P L++ S + + L LDL +N+
Sbjct: 299 LDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357
Query: 276 LLADELEDLK-KLETLLLDGNHF--PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNL 332
L + L +L L TL L N+F P++ + + LQ L L+ N +N
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417
Query: 333 TNLIELDISYNKLD---RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALS 389
+ L+ L +S+N L + S + LRDLK+ N ++ ++ L + L+ L
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSL----SKLRDLKLWLNMLE-GEIPQELMYVKTLETLI 472
Query: 390 IADMNYT-DIPKGLFKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKF 443
+ + T +IP GL +L +++LS N L I L L L LS N F
Sbjct: 473 LDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPKWIGRL-----ENLAILKLSNNSF 526
Query: 444 KG 445
G
Sbjct: 527 SG 528
Score = 121 bits (305), Expect = 3e-29
Identities = 76/375 (20%), Positives = 134/375 (35%), Gaps = 42/375 (11%)
Query: 105 NHLTIGPI---FQQFQHLEELHI-TNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
NH G + F LE L + +N+F + + L+ L+L+ N + L +
Sbjct: 304 NHFY-GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES 362
Query: 161 FKGM-MNLQELYLDFNKIE-SIPSSVF-MHLSDLRVLSLAHNRISKLAPRLFLKLSKLKS 217
+ +L L L N I ++ + L+ L L +N + P S+L S
Sbjct: 363 LTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVS 422
Query: 218 LDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276
L LS+N + I + + +L+ K LE P + L L L +N L
Sbjct: 423 LHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481
Query: 277 LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLI 336
+ L + L + L N + K L +L L N + + +LI
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 337 ELDISYNKL-----------------DRLEVASFDPIEN--SLRDLKISGNNIQLS-DVK 376
LD++ N + + + I+N ++ +GN ++
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 377 NVLDKLVKLKALSIADMNYT-DIPKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQSN 430
L++L +I Y + FL++S N L ++I ++ Y
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNG-SMMFLDMSYNMLSGYIPKEIGSMPY--- 657
Query: 431 IKLTHLDLSRNKFKG 445
L L+L N G
Sbjct: 658 --LFILNLGHNDISG 670
Score = 101 bits (255), Expect = 5e-23
Identities = 79/383 (20%), Positives = 123/383 (32%), Gaps = 81/383 (21%)
Query: 105 NHLTIGPI----FQQFQHLEELHI-TNSF---IPAIGFHPFWGVPSLRYLNLTHNNIT-S 155
N T G I L L + N F +P F L L L+ NN +
Sbjct: 279 NKFT-GEIPDFLSGACDTLTGLDLSGNHFYGAVPPF----FGSCSLLESLALSSNNFSGE 333
Query: 156 LLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRIS-KLAPRLF-LKL 212
L M L+ L L FN+ +P S+ + L L L+ N S + P L
Sbjct: 334 LPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 213 SKLKSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
+ L+ L L N +I P + ++L+ L L +N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSN-------------------------CSELVSLHLSFN 428
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTN 331
L + L L KL L L N + + L+ L L N L + +N
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 332 LTNLIELDISYNKLDRLEVASFDPIENS------LRDLKISGNNIQLS-DVKNVLDKLVK 384
TNL + +S N+L I L LK+S N+ S ++ L
Sbjct: 489 CTNLNWISLSNNRL-------TGEIPKWIGRLENLAILKLSNNS--FSGNIPAELGDCRS 539
Query: 385 LKALSIADMNYT-DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI------------ 431
L L + + IP +FK + + ++G I N +
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGI 599
Query: 432 ---------KLTHLDLSRNKFKG 445
+++ + G
Sbjct: 600 RSEQLNRLSTRNPCNITSRVYGG 622
Score = 98.1 bits (245), Expect = 7e-22
Identities = 73/359 (20%), Positives = 122/359 (33%), Gaps = 60/359 (16%)
Query: 105 NHLTIGPIFQQF-----QHLEELHI-TNSF---IPAIGFHPFWGVPSLRYLNLTHNNITS 155
N+ + GPI L+EL++ N F IP L L+L+ N ++
Sbjct: 378 NNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSG 432
Query: 156 LLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
+ + + L++L L N +E IP M++ L L L N ++ P +
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTN 491
Query: 215 LKSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273
L + LS N + EI P+ ++ L K + P LI+LDL N
Sbjct: 492 LNWISLSNNRLTGEI-PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 274 KYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN--RLAKVTTTAFTN 331
+ + + + N + + N + +
Sbjct: 551 NGTIPAAMFKQ----SGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 332 LTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIA 391
L+ +I+ +FD + + L +S N LS
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGS-MMFLDMSYNM--LSG----------------- 646
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQSNIKLTHLDLSRNKFKG 445
IPK + M +L LNL N++ ++ +L L LDLS NK G
Sbjct: 647 -----YIPKEIGSMP-YLFILNLGHNDISGSIPDEVGDL-----RGLNILDLSSNKLDG 694
Score = 83.4 bits (207), Expect = 5e-17
Identities = 65/270 (24%), Positives = 104/270 (38%), Gaps = 23/270 (8%)
Query: 187 HLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS 246
++ + + S N L L+ L+SL LS + I FK L +
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSR 109
Query: 247 CGLENINPMMYSI--LADLIYLDLGYNQLKYLLADELE-DLKKLETLLLDGNHF----PV 299
L + S+ + L +L++ N L + L LE L L N V
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN- 358
S +L+ L + N+++ + NL LD+S N + +
Sbjct: 170 GWVLSDGCG-ELKHLAISGNKIS--GDVDVSRCVNLEFLDVSSNNF----STGIPFLGDC 222
Query: 359 -SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYT-DIPKGLFKMNPHLQFLNLSG 416
+L+ L ISGN + D + +LK L+I+ + IP LQ+L+L+
Sbjct: 223 SALQHLDISGNKLS-GDFSRAISTCTELKLLNISSNQFVGPIPPLPL---KSLQYLSLAE 278
Query: 417 NNLQ-DIHNLLYQSNIKLTHLDLSRNKFKG 445
N +I + L + LT LDLS N F G
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Score = 60.7 bits (148), Expect = 7e-10
Identities = 49/258 (18%), Positives = 73/258 (28%), Gaps = 82/258 (31%)
Query: 105 NHLTIGPIFQQFQHLEELHI----TNSF---IPAIGFHPFWGVPSLRYL--NLTHNNITS 155
N + G I + L TN F IP ++ + N I
Sbjct: 524 NSFS-GNIPAELGDCRSLIWLDLNTNLFNGTIP----------AAMFKQSGKIAANFIAG 572
Query: 156 LLDYNFKGMMNLQELYLDFNKIE---SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKL 212
K +E + N +E + LS ++ F
Sbjct: 573 KRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN-RLSTRNPCNITSRVYGGHTSPTFDNN 631
Query: 213 SKLKSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
+ LD+SYN + I EI + L L+LG+N
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGS-------------------------MPYLFILNLGHN 666
Query: 272 QLKYLLADELEDLKKLETLLLDGNHF----PVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
+ + DE+ DL+ L L L N P
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIP----------------------------Q 698
Query: 328 AFTNLTNLIELDISYNKL 345
A + LT L E+D+S N L
Sbjct: 699 AMSALTMLTEIDLSNNNL 716
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 121 bits (306), Expect = 5e-30
Identities = 65/344 (18%), Positives = 117/344 (34%), Gaps = 43/344 (12%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
LN++ N I+ L + + L+ L + N+I+ + SVF +L L L+HN+
Sbjct: 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEI-NPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
+ K++ LK LDLS+N + + F ++ +LK + LE + + +
Sbjct: 81 LVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 260 LADL-IYLDLGYNQLKYLLADELEDL--KKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
L + L LG + + L+D + L + F IL+ S + L++ +
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197
Query: 317 KRNRLAKVTTT---------------------------------AFTNLTNLIELDISYN 343
K + T + IS
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257
Query: 344 KLDR-LEVASFDPIENSLRDLKIS--GNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
KL L+ FD SL+ L I +++ + + + + +
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
L+ S N L D +L L L N+ K
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
Score = 116 bits (293), Expect = 3e-28
Identities = 52/392 (13%), Positives = 120/392 (30%), Gaps = 56/392 (14%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTM-------------------LFQVTIFLYLL 48
MS+LK L LS + + + + + + ++ +
Sbjct: 114 MSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173
Query: 49 HSSASVMCPYMCECALDDRGRYEI-----VCRRGDMANPIPIGQMDLGTEVLKIVPSEEN 103
+ + + + I + + + Q + L + E
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETT 233
Query: 104 PNHLTIGPIFQQFQHLEELHITNSFIPAIGFHP-----FWGVPSLRYLNLTHNNITSLLD 158
N + I+N + + +L + +
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293
Query: 159 YNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSL 218
Y ++ N+ + + +S L ++N ++ L++L++L
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETL 353
Query: 219 DLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLA 278
L N + E+ +I + ++K+ L LD+ N + Y
Sbjct: 354 ILQMNQLKEL-SKIAEMTTQMKS---------------------LQQLDISQNSVSYDEK 391
Query: 279 DELED-LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIE 337
K L +L + N + + + ++VL L N++ + L L E
Sbjct: 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIKSIPKQVV-KLEALQE 448
Query: 338 LDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
L+++ N+L + FD + SL+ + + N
Sbjct: 449 LNVASNQLKSVPDGIFDRLT-SLQKIWLHTNP 479
Score = 113 bits (285), Expect = 3e-27
Identities = 56/343 (16%), Positives = 116/343 (33%), Gaps = 15/343 (4%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
+ Q + F FH V NL +NI +L+ N
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L N S + + + + I +L + + ++ L
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIR-----ILQLVWHTTVWYFSISNVKLQGQL 263
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
++ L + S +Y I +++ + + + + +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKI 323
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA--FTNLTNLIELDISY 342
L N + ++ +L+ L L+ N+L +++ A T + +L +LDIS
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ 383
Query: 343 NKL-DRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKL-VKLKALSIADMNYTDIPK 400
N + + ++ L L +S N + + L ++K L + IPK
Sbjct: 384 NSVSYDEKKGDCSWTKS-LLSLNMSSNILT----DTIFRCLPPRIKVLDLHSNKIKSIPK 438
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+ K+ LQ LN++ N L+ + + ++ L + L N +
Sbjct: 439 QVVKL-EALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
Score = 112 bits (281), Expect = 1e-26
Identities = 68/381 (17%), Positives = 124/381 (32%), Gaps = 50/381 (13%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-LDYNFKGMMNLQEL 170
+F+ Q LE L ++++ + I HP +L++L+L+ N +L + F M L+ L
Sbjct: 64 VFKFNQELEYLDLSHNKLVKISCHPT---VNLKHLDLSFNAFDALPICKEFGNMSQLKFL 120
Query: 171 YLDFNKIESIPSSVFMH----------------------LSDLRVLSLAHNRISKLAPRL 208
L +E H L D SL +
Sbjct: 121 GLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Query: 209 FLKLSKLKSLDLSYNDIVEI--------------NPEIFKDIQELKTFKCRSCGLENINP 254
L +S +L ++I + + + L + I
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240
Query: 255 MMYSILADLIYLDLGYNQLKYLLADELED-----LKKLETLLLDGNHFPVILEKSFSSQF 309
+ + Y + +L+ L D LK L + + F +
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300
Query: 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
+ + + V + ++ + LD S N L + + L L + N
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-TELETLILQMNQ 359
Query: 370 IQ-LSDVKNVLDKLVKLKALSIADMNYT-DIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
++ LS + + ++ L+ L I+ + + D KG L LN+S N L D
Sbjct: 360 LKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419
Query: 428 QSNIKLTHLDLSRNKFKGFDE 448
+ LDL NK K +
Sbjct: 420 PPR--IKVLDLHSNKIKSIPK 438
Score = 109 bits (275), Expect = 6e-26
Identities = 56/364 (15%), Positives = 120/364 (32%), Gaps = 29/364 (7%)
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMN 166
L I F L+ L ++ + + P + + L + + +G+ +
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY--GEKEDPEGLQD 162
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI----------------SKLAPRLFL 210
L + + +S V +L + I +KL L
Sbjct: 163 FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKL 222
Query: 211 KLSKLKSLDLSYNDIVEINPEIF-KDIQELKTFKCRSCGLENINPMMYS--ILADLIYLD 267
L +++ ++N + I ++ + + G + YS L L
Sbjct: 223 SNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282
Query: 268 LGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
+ + + + E + + ++ S L N L
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342
Query: 328 AFTNLTNLIELDISYNKLDRLEVAS--FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKL 385
+LT L L + N+L L + + SL+ L IS N++ + K L
Sbjct: 343 NCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSL 401
Query: 386 KALSIADMNYTDIPKGLFKMNPH-LQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
+L +M+ + +F+ P ++ L+L N ++ I + + L L+++ N+ K
Sbjct: 402 LSL---NMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLE-ALQELNVASNQLK 457
Query: 445 GFDE 448
+
Sbjct: 458 SVPD 461
Score = 74.9 bits (184), Expect = 2e-14
Identities = 39/186 (20%), Positives = 75/186 (40%), Gaps = 6/186 (3%)
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
+ L++ N + L ++ L KL L++ N + F +L+ L L
Sbjct: 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRL-EVASFDPIENSLRDLKISGNNIQLSDVKN 377
N+L K++ NL LD+S+N D L F + L+ L +S +++
Sbjct: 79 NKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQ-LKFLGLSTTHLE-KSSVL 133
Query: 378 VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLD 437
+ L K L + Y + + + + L++ ++ H +L S + +L+
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193
Query: 438 LSRNKF 443
LS K
Sbjct: 194 LSNIKC 199
Score = 68.4 bits (167), Expect = 2e-12
Identities = 33/143 (23%), Positives = 63/143 (44%), Gaps = 9/143 (6%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
+L + +N ++++ T+ +L+ L L IS+N++ L+++ F + L L +S N +
Sbjct: 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQE-LEYLDLSHNKL 81
Query: 371 Q-LSDVKNVLDKLVKLKALSIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDI-HNLLY 427
+S V LK L ++ + +P F L+FL LS +L+ +
Sbjct: 82 VKIS-----CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 428 QSNIKLTHLDLSRNKFKGFDEKS 450
NI L L + D +
Sbjct: 137 HLNISKVLLVLGETYGEKEDPEG 159
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex,
GPCR, graves' disea autoimmunity, receptor-autoantibody
complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB:
3g04_C*
Length = 239
Score = 115 bits (290), Expect = 9e-30
Identities = 37/224 (16%), Positives = 82/224 (36%), Gaps = 30/224 (13%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN-KIESIPSSVFMHLSDLRVLSLAHN 199
PS + L L ++ ++ + F + N+ +Y+ + ++ + S F +LS + + + +
Sbjct: 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 200 R-ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYS 258
R ++ + P +L LK L + +
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK-----------------------VY 127
Query: 259 ILADLIYLDLGYN-QLKYLLADELEDLKK-LETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
L++ N + + + + L TL L N F + +F+ KL + L
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT-KLDAVYL 186
Query: 317 KRNR-LAKVTTTAFTNL-TNLIELDISYNKLDRLEVASFDPIEN 358
+N+ L + AF + + LD+S + L + ++
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230
Score = 97.4 bits (243), Expect = 3e-23
Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 14/231 (6%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND- 224
++ + I+ IPS + L L + + F L + + +S +
Sbjct: 12 QEEDFRVTCKDIQRIPSL----PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 225 IVEINPEIFKDIQELKTFK-CRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADE-LE 282
+ ++ F ++ ++ + + L I+P L L +L + LK +
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 283 DLKKLETL-LLDGNHFPVILEKSFSSQFK-LQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
L + D + I +F L L N V AF N T L + +
Sbjct: 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYL 186
Query: 341 SYNK-LDRLEVASFDPIENSLRDLKISGNNIQ-LSDVKNVLDKLVKLKALS 389
+ NK L ++ +F + + L +S ++ L L+ L +L A +
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--KGLEHLKELIARN 235
Score = 93.5 bits (233), Expect = 6e-22
Identities = 26/184 (14%), Positives = 70/184 (38%), Gaps = 6/184 (3%)
Query: 113 FQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN-FKGMMNLQEL 170
F ++ ++++ + + + H F+ + + ++ + + + +D + K + L+ L
Sbjct: 51 FSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110
Query: 171 YLDFNKIESIPSSVFMH-LSDLRVLSLAHN-RISKLAPRLFLKLSK-LKSLDLSYNDIVE 227
+ ++ P ++ +L + N ++ + F L +L L N
Sbjct: 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS 170
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLI-YLDLGYNQLKYLLADELEDLKK 286
+ F + + ++ L I+ + + LD+ + L + LE LK+
Sbjct: 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKE 230
Query: 287 LETL 290
L
Sbjct: 231 LIAR 234
Score = 83.9 bits (208), Expect = 1e-18
Identities = 34/208 (16%), Positives = 67/208 (32%), Gaps = 32/208 (15%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN-H 296
+ + F+ ++ I P S+ L L L+ + + +L + + + +
Sbjct: 12 QEEDFRVTCKDIQRI-P---SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT 67
Query: 297 FPVILEKSFSSQFKLQVLCLKRNR-LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355
+ SF + K+ + ++ R L + A L L L I L +
Sbjct: 68 LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVY 127
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF-KMNPHLQFLNL 414
+ L+I+ N + T IP F + L L
Sbjct: 128 STDIFFILEITDNP-YM-----------------------TSIPVNAFQGLCNETLTLKL 163
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
N + + + KL + L++NK
Sbjct: 164 YNNGFTSVQGYAF-NGTKLDAVYLNKNK 190
Score = 68.9 bits (169), Expect = 2e-13
Identities = 33/139 (23%), Positives = 54/139 (38%), Gaps = 7/139 (5%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN-KLDRLEVASFDPIENSLRDLKISGNN 369
Q L L L + + AF+NL N+ + +S + L +LE SF + + ++I
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK-VTHIEIRNTR 91
Query: 370 IQLSDV-KNVLDKLVKLKALSIADMNYTDIP-KGLFKMNPHLQFLNLSGNN-LQDIHNLL 426
L+ + + L +L LK L I + P L ++ N + I
Sbjct: 92 -NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 427 YQSNIKLT-HLDLSRNKFK 444
+Q T L L N F
Sbjct: 151 FQGLCNETLTLKLYNNGFT 169
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors,
glycocalicin, leucine rich repeats, BLOO clotting; HET:
NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB:
1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A*
1p8v_A* 1u0n_D 3p72_A
Length = 290
Score = 115 bits (289), Expect = 4e-29
Identities = 53/233 (22%), Positives = 86/233 (36%), Gaps = 32/233 (13%)
Query: 136 PFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLS 195
V S +N N+T+L K + L+L N + + + M + L L+
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 196 LAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPM 255
L ++KL L L +LDLS+N + + P + + + L
Sbjct: 62 LDRAELTKLQV--DGTLPVLGTLDLSHNQLQSL-PLLGQTLPALT--------------- 103
Query: 256 MYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLC 315
LD+ +N+L L L L +L+ L L GN + + KL+ L
Sbjct: 104 ---------VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154
Query: 316 LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
L N L ++ L NL L + N L + F + L + GN
Sbjct: 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGS--HLLPFAFLHGN 205
Score = 113 bits (284), Expect = 2e-28
Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 30/193 (15%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N L + L +L++ + + + +P L L+L+HN + SL +
Sbjct: 41 NLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-PLLGQ 97
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ L L + FN++ S+P L +L+ L L N + L P L KL+ L L+
Sbjct: 98 TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE 282
N++ E+ + ++ L T L L N L +
Sbjct: 158 NNLTELPAGLLNGLENLDT------------------------LLLQENSLY-TIPKGFF 192
Query: 283 DLKKLETLLLDGN 295
L L GN
Sbjct: 193 GSHLLPFAFLHGN 205
Score = 106 bits (267), Expect = 4e-26
Identities = 48/204 (23%), Positives = 73/204 (35%), Gaps = 28/204 (13%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ LH++ + + L LNL +T L + L L L N
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHN 87
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD 235
+++S+P + L L VL ++ NR++ L L +L+ L L N++ + P +
Sbjct: 88 QLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
L L L N L L A L L+ L+TLLL N
Sbjct: 147 ------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 296 HFPVILEKSFSSQFKLQVLCLKRN 319
I + F S L L N
Sbjct: 183 SLYTIPKGFFGSH-LLPFAFLHGN 205
Score = 92.9 bits (231), Expect = 3e-21
Identities = 45/206 (21%), Positives = 69/206 (33%), Gaps = 32/206 (15%)
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298
C L + P + D L L N L L +L L LD
Sbjct: 12 HLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN 358
+ + + L L L N+L + L L LD+S+N+L L + + +
Sbjct: 69 KL--QVDGTLPVLGTLDLSHNQLQSLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGE 125
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
L++L + GN + +P GL P L+ L+L+ NN
Sbjct: 126 -LQELYLKGNEL-------------------------KTLPPGLLTPTPKLEKLSLANNN 159
Query: 419 LQDIHNLLYQSNIKLTHLDLSRNKFK 444
L ++ L L L L N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLY 185
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.8A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1
Length = 308
Score = 115 bits (290), Expect = 5e-29
Identities = 53/269 (19%), Positives = 104/269 (38%), Gaps = 21/269 (7%)
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDF 174
+ ++ S + + + L+ +T++ + + NL L L
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
N+I + + +L+ + L L+ N + ++ L +K+LDL+ I ++ P
Sbjct: 73 NQITDL--APLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LA 126
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
+ L+ + NI+P+ L +L YL +G Q+ L L +L KL TL D
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAG--LTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADD 182
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N I +S L + LK N+++ V+ N +NL + ++ + V
Sbjct: 183 NKISDI--SPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYN- 237
Query: 355 PIENSLRDLKISGNNIQLSDVKNVLDKLV 383
N + + G + + D
Sbjct: 238 --NNLVVPNVVKGPSGAPIAPATISDNGT 264
Score = 100 bits (252), Expect = 7e-24
Identities = 55/303 (18%), Positives = 99/303 (32%), Gaps = 75/303 (24%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ + +N+T + + + L + +I +L++L L L N+
Sbjct: 19 ANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQ 74
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I+ LAP L+K+ L+LS N + ++ + L
Sbjct: 75 ITDLAP--LKNLTKITELELSGNPLKNVSA------------------IAG--------L 106
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+ LDL Q+ + L L L+ L LD N I
Sbjct: 107 QSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI-------------------- 144
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNV 378
+ LTNL L I ++ + P+ N L LK N I SD+
Sbjct: 145 ------SPLAGLTNLQYLSIGNAQV-----SDLTPLANLSKLTTLKADDNKI--SDISP- 190
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
L L L + + + +D+ +L + L+ + + N L ++
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF---YNNNLVVPNV 245
Query: 439 SRN 441
+
Sbjct: 246 VKG 248
Score = 84.0 bits (208), Expect = 4e-18
Identities = 49/247 (19%), Positives = 89/247 (36%), Gaps = 48/247 (19%)
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
I+ + P L+ + +++ + D+ + T G+ I + Y
Sbjct: 6 PTAINVIFP--DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQY 61
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLK 317
L +LI L+L NQ+ L L++L K+ L L GN +
Sbjct: 62 --LNNLIGLELKDNQITDL--APLKNLTKITELELSGNPLKNV----------------- 100
Query: 318 RNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDV 375
+A L ++ LD++ ++ P+ +L+ L + N I +++
Sbjct: 101 ---------SAIAGLQSIKTLDLTSTQI-----TDVTPLAGLSNLQVLYLDLNQI--TNI 144
Query: 376 KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTH 435
L L L+ LSI + +D+ L L N + DI L S L
Sbjct: 145 SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISPL--ASLPNLIE 199
Query: 436 LDLSRNK 442
+ L N+
Sbjct: 200 VHLKNNQ 206
Score = 77.8 bits (192), Expect = 5e-16
Identities = 41/202 (20%), Positives = 75/202 (37%), Gaps = 12/202 (5%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N L Q ++ L +T++ I + P G+ +L+ L L N IT++ G+
Sbjct: 95 NPLKNVSAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGL 150
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
NLQ L + ++ + +LS L L N+IS ++P L L + L N
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
I +++P + L + + N + L + + + D
Sbjct: 207 ISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKG--PSGAPIAPATISDN 262
Query: 285 KKLETLLLDGNHFPVILEKSFS 306
+ L N I S++
Sbjct: 263 GTYASPNLTWNLTSFINNVSYT 284
Score = 54.3 bits (131), Expect = 3e-08
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 14/119 (11%)
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
L N I++ + + + + L G + + ++ + L L L
Sbjct: 17 ALANAIKIAAGKSNVTDTV-----TQADLDGITTLSAFGTGV--TTIEG-VQYLNNLIGL 68
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFD 447
+ D TD+ K + L LSGN L+++ + + LDL+ +
Sbjct: 69 ELKDNQITDLAP--LKNLTKITELELSGNPLKNVSAI--AGLQSIKTLDLTSTQITDVT 123
Score = 39.3 bits (92), Expect = 0.002
Identities = 12/75 (16%), Positives = 23/75 (30%), Gaps = 5/75 (6%)
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
++ + L ++ N TD + L+ G + I +
Sbjct: 5 QPTAINVIFP-DPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGV-- 59
Query: 428 QSNIKLTHLDLSRNK 442
Q L L+L N+
Sbjct: 60 QYLNNLIGLELKDNQ 74
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 116 bits (291), Expect = 6e-28
Identities = 61/381 (16%), Positives = 120/381 (31%), Gaps = 52/381 (13%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN-FKGMMNLQEL 170
+F Q LE L ++++ + I P SLR+L+L+ N+ L F + L L
Sbjct: 95 VFLFNQDLEYLDVSHNRLQNISCCPM---ASLRHLDLSFNDFDVLPVCKEFGNLTKLTFL 151
Query: 171 YLDFNKIESIPSSVFMHLS------------------------DLRVLSLAHNRISKLAP 206
L K + HL + VL L + S +
Sbjct: 152 GLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSV 211
Query: 207 RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI------- 259
++ + ++ L L LS + + N + T + +
Sbjct: 212 QVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271
Query: 260 ---LADLIYLDLGYNQLKYLLADELED-----LKKLETLLLDGNHFPVILEKSFSSQFKL 311
+ YL++ + + E LK L + F E +S ++
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
+ L + + + ++ L+ + N ++ L+ L + N
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR-LQTLILQRN--G 388
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN----PHLQFLNLSGNNLQDIHNLLY 427
L + V + +L D++ + + + LNLS N L ++
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG--SVFR 446
Query: 428 QSNIKLTHLDLSRNKFKGFDE 448
K+ LDL N+ +
Sbjct: 447 CLPPKVKVLDLHNNRIMSIPK 467
Score = 116 bits (291), Expect = 6e-28
Identities = 58/319 (18%), Positives = 119/319 (37%), Gaps = 21/319 (6%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P + L+L+ N+I+ L + + L+ L L N+I S+ VF+ DL L ++HNR
Sbjct: 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEI-NPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
+ ++ ++ L+ LDLS+ND + + F ++ +L + ++ + +
Sbjct: 112 LQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168
Query: 260 LA-DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
L I LDL +K + L+ L L + + + S L L L
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPI--------------ENSLRDLK 364
+L + + + + + + ++ +L
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287
Query: 365 ISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHN 424
I+ I + L L + + + + L+ + + LS ++ IH
Sbjct: 288 ITE-RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 425 LLYQSNIKLTHLDLSRNKF 443
+ S T L+ ++N F
Sbjct: 347 VCPPSPSSFTFLNFTQNVF 365
Score = 112 bits (281), Expect = 1e-26
Identities = 55/369 (14%), Positives = 124/369 (33%), Gaps = 12/369 (3%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
++KL L LS +++ + + +L + + + S+ P L
Sbjct: 145 LTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH 204
Query: 68 GRYEIVCRRGDMANPIPIGQM-DLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN 126
+ N + Q+ ++ + LT GP
Sbjct: 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNITSL--LDYNFKGMMNLQELYLDFNKIESIPSSV 184
+ F V L NLT Y+ + +L ++ ++
Sbjct: 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEAL 324
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
+ +++ + L+ + + S L+ + N + + ++ L+T
Sbjct: 325 YSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL 384
Query: 245 RSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL----KKLETLLLDGNHFPVI 300
+ GL+N + + ++ L+ L L + + + + L L N
Sbjct: 385 QRNGLKNF-FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443
Query: 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSL 360
+ + + ++VL L NR+ + T+L L EL+++ N+L + FD + SL
Sbjct: 444 VFRCLPPK--VKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDGVFDRLT-SL 499
Query: 361 RDLKISGNN 369
+ + + N
Sbjct: 500 QYIWLHDNP 508
Score = 108 bits (272), Expect = 2e-25
Identities = 63/355 (17%), Positives = 123/355 (34%), Gaps = 32/355 (9%)
Query: 113 FQQFQHLEE----LHITNSFIPAIGFHPFWGVPSLRYLNLTHNN----ITSLLDYNFKGM 164
HL L + + I + + H N + + N G
Sbjct: 163 LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGH 222
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRL-----FLKLSKLKSLD 219
+ L + L+ + + + + +L++ I F ++ L+
Sbjct: 223 LQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 220 LSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN--------PMMYSILADLIYLDLGYN 271
+ I E E +S +E++ +YS+ A++ L +
Sbjct: 283 IYNLTITERIDREEFTYSETAL---KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSIS 339
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAF-- 329
++ L N F + + S+ +LQ L L+RN L A
Sbjct: 340 DTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMT 399
Query: 330 TNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLV-KLKAL 388
N+++L LD+S N L+ S+ L +S N + +V L K+K L
Sbjct: 400 KNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLT----GSVFRCLPPKVKVL 455
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+ + IPK + + LQ LN++ N L+ + + ++ L ++ L N +
Sbjct: 456 DLHNNRIMSIPKDVTHL-QALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling
protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15
b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Length = 605
Score = 115 bits (290), Expect = 8e-28
Identities = 55/275 (20%), Positives = 105/275 (38%), Gaps = 19/275 (6%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ F + ++ + + S+ + +++I S+ +
Sbjct: 7 VSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--GIQ 62
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ N+ +L+L+ NK+ I +L +L L L N+I L+ L KLKSL L +
Sbjct: 63 YLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEH 118
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE 282
N I +IN + +L++ + + +I + S L L L L NQ+ + L
Sbjct: 119 NGISDING--LVHLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDI--VPLA 172
Query: 283 DLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY 342
L KL+ L L NH + ++ + L VL L +NL + +
Sbjct: 173 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230
Query: 343 NKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN 377
L E+ S D + + + ++ +
Sbjct: 231 GSLVTPEIISDDGD---YEKPNVKWHLPEFTNEVS 262
Score = 111 bits (278), Expect = 3e-26
Identities = 62/333 (18%), Positives = 129/333 (38%), Gaps = 21/333 (6%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
+ E ++ I I P NL ++T + + ++ ++ + + I+
Sbjct: 1 MGETITVSTPIKQI--FPDDAFAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIK 56
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE 238
S+ +L ++ L L N+++ + P L L L L N I +++ KD+++
Sbjct: 57 SV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKK 110
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298
LK+ G+ +IN + L L L LG N++ + L L KL+TL L+ N
Sbjct: 111 LKSLSLEHNGISDINGL--VHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS 166
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE- 357
I + KLQ L L +N ++ + A L NL L++ + + +
Sbjct: 167 DI--VPLAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNLVV 222
Query: 358 -NSLRDLKISGNNIQ-LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
N++++ S + +SD + VK + + + +F
Sbjct: 223 PNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRV 282
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
L++++ + Y + + + +
Sbjct: 283 TQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPK 315
Score = 101 bits (253), Expect = 4e-23
Identities = 44/262 (16%), Positives = 92/262 (35%), Gaps = 24/262 (9%)
Query: 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250
+ I ++ P ++ +L + + ++ + + ++
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56
Query: 251 NINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFK 310
++ + Y L ++ L L N+L + L +LK L L LD N + S K
Sbjct: 57 SVQGIQY--LPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIKDL--SSLKDLKK 110
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGN 368
L+ L L+ N ++ + +L L L + NK+ + + L L + N
Sbjct: 111 LKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT-----VLSRLTKLDTLSLEDN 163
Query: 369 NIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQ 428
I SD+ L L KL+ L ++ + +D+ +L L L +
Sbjct: 164 QI--SDIVP-LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQS 218
Query: 429 SNIKLTHLDLSRNKFKGFDEKS 450
+ + + + + S
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIIS 240
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis,
effector protein, virulence factor, toxin; 2.10A
{Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Length = 454
Score = 113 bits (286), Expect = 1e-27
Identities = 64/345 (18%), Positives = 124/345 (35%), Gaps = 72/345 (20%)
Query: 105 NHLT-IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKG 163
N LT + + Q + L + + + P L YL +++N + L + +
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQN 151
Query: 164 MMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
L+ + +D N ++ +P L ++ +N++ +L L L ++ N
Sbjct: 152 SSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNN 205
Query: 224 DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
+ ++ L + G N L+ L EL++
Sbjct: 206 SLKKLPDLPLS----------------------------LESIVAGNNILEEL--PELQN 235
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
L L T+ D N L+ L+ L ++ N L + +L LD+S N
Sbjct: 236 LPFLTTIYADNNL----LKTLPDLPPSLEALNVRDNYLTDLP----ELPQSLTFLDVSEN 287
Query: 344 KLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
L + +L L S N I +++ D L+ L++++ ++P
Sbjct: 288 IFSGLS-----ELPPNLYYLNASSNEI-----RSLCDLPPSLEELNVSNNKLIELPALP- 336
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
P L+ L S N+L ++ L L L + N + F +
Sbjct: 337 ---PRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREFPD 374
Score = 113 bits (284), Expect = 3e-27
Identities = 57/345 (16%), Positives = 118/345 (34%), Gaps = 53/345 (15%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N L P Q L+ + + N+ + + PSL ++ +N + L + +
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIAAGNNQLEEL--PELQNL 194
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L +Y D N ++ +P L + +N + +L L L ++ N
Sbjct: 195 PFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNL 248
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ + L+ R L ++ + L +LD+ N L E
Sbjct: 249 LKTLPDLPPS----LEALNVRDNYLTDLP----ELPQSLTFLDVSENIFSGLS----ELP 296
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
L L N + L+ L + N+L L L S+N
Sbjct: 297 PNLYYLNASSNE----IRSLCDLPPSLEELNVSNNKL----IELPALPPRLERLIASFNH 348
Query: 345 LDRLEVASFDPIE-NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
L + P +L+ L + N L + ++ + + L+ S + ++P+
Sbjct: 349 LAEV------PELPQNLKQLHVEYN--PLREFPDIPESVEDLRMNS----HLAEVPELP- 395
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+L+ L++ N L++ ++ + L ++ + E
Sbjct: 396 ---QNLKQLHVETNPLREFPDIPES----VEDLRMNSERVVDPYE 433
Score = 109 bits (275), Expect = 4e-26
Identities = 63/318 (19%), Positives = 111/318 (34%), Gaps = 70/318 (22%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
P L L + N++T L + + + +L + + +P L L +++N
Sbjct: 90 PPHLESLVASCNSLTELPE-LPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNN 141
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
++ KL S LK +D+ N + ++
Sbjct: 142 QLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLPPS------------------------- 174
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L ++ G NQL+ L EL++L L + D N L+K L+ + N
Sbjct: 175 ---LEFIAAGNNQLEEL--PELQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNN 225
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
L ++ NL L + N L + + SL L + N L+D+ +
Sbjct: 226 ILEELPE--LQNLPFLTTIYADNNLL-----KTLPDLPPSLEALNVRDN--YLTDLPELP 276
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMN-------------PHLQFLNLSGNNLQDIHNLL 426
L L +++P L+ +N P L+ LN+S N L ++ L
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP 336
Query: 427 YQSNIKLTHLDLSRNKFK 444
+L L S N
Sbjct: 337 P----RLERLIASFNHLA 350
Score = 107 bits (269), Expect = 3e-25
Identities = 70/443 (15%), Positives = 151/443 (34%), Gaps = 89/443 (20%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
L+SL S N + E+ + + + S + P +
Sbjct: 90 PPHLESLVASCNSLTELPELPQS--------LKSLLVDNNNLKALSDLPPLLEY------ 135
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLT--------IGPIFQQFQHL 119
+ + L+ +P +N + L + + L
Sbjct: 136 --------------------LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 175
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
E + N+ + + +P L + +N++ L ++L+ + N +E
Sbjct: 176 EFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEE 229
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+P +L L + +N + L L++L++ N + ++ PE+ + + L
Sbjct: 230 LPE--LQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDL-PELPQSLTFL 282
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
+ GL + +L YL+ N+++ L + LE L + N
Sbjct: 283 DVSENIFSGLS-------ELPPNLYYLNASSNEIRSL----CDLPPSLEELNVSNNK--- 328
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
L + + +L+ L N LA+V NL +L + YN L F I S
Sbjct: 329 -LIELPALPPRLERLIASFNHLAEVPEL----PQNLKQLHVEYNPLR-----EFPDIPES 378
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
+ DL+++ + ++ + LK L + + P ++ L ++ +
Sbjct: 379 VEDLRMNSHLAEVP------ELPQNLKQLHVETNPLREFPDIPES----VEDLRMNSERV 428
Query: 420 QDIHNLLYQSNIKLTHLDLSRNK 442
D + +++ KL +
Sbjct: 429 VDPYEFAHETTDKLEDDVFEHHH 451
Score = 102 bits (256), Expect = 1e-23
Identities = 60/316 (18%), Positives = 108/316 (34%), Gaps = 60/316 (18%)
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLS--------- 213
LQE + + +P ++ A + + AP +
Sbjct: 9 SNTFLQEPLRHSSNLTEMPVEAE-NVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 214 ----KLKSLDLSYNDIVEINPEIF----------------KDIQELKTFKCRSCGLENIN 253
+ L+L+ + + + Q LK+ + L+ ++
Sbjct: 68 CLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALS 127
Query: 254 PMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQV 313
+ L YL + NQL+ L EL++ L+ + +D N L+K L+
Sbjct: 128 ----DLPPLLEYLGVSNNQLEKL--PELQNSSFLKIIDVDNNS----LKKLPDLPPSLEF 177
Query: 314 LCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI-QL 372
+ N+L ++ NL L + N L + SL + N + +L
Sbjct: 178 IAAGNNQLEELPE--LQNLPFLTAIYADNNSL-----KKLPDLPLSLESIVAGNNILEEL 230
Query: 373 SDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIK 432
+++N L L + + +P P L+ LN+ N L D+ L
Sbjct: 231 PELQN----LPFLTTIYADNNLLKTLPDLP----PSLEALNVRDNYLTDLPELPQS---- 278
Query: 433 LTHLDLSRNKFKGFDE 448
LT LD+S N F G E
Sbjct: 279 LTFLDVSENIFSGLSE 294
Score = 71.6 bits (176), Expect = 2e-13
Identities = 40/254 (15%), Positives = 84/254 (33%), Gaps = 44/254 (17%)
Query: 210 LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINP-------------MM 256
+ + L+ +++ E+ E ++ + E P +
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
+ L+L L L E LE+L+ N L + S L V
Sbjct: 67 DCLDRQAHELELNNLGLSSL----PELPPHLESLVASCNSL-TELPELPQSLKSLLVDNN 121
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSD 374
L+ L L +S N+L++L ++N L+ + + N++
Sbjct: 122 NLKALS-------DLPPLLEYLGVSNNQLEKL-----PELQNSSFLKIIDVDNNSL---- 165
Query: 375 VKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLT 434
K + D L+ ++ + ++P+ + P L + N+L+ + +L L
Sbjct: 166 -KKLPDLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLPLS----LE 218
Query: 435 HLDLSRNKFKGFDE 448
+ N + E
Sbjct: 219 SIVAGNNILEELPE 232
Score = 46.9 bits (112), Expect = 9e-06
Identities = 19/136 (13%), Positives = 43/136 (31%), Gaps = 25/136 (18%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL-------- 156
N L + LE L + + + + P +L+ L++ +N +
Sbjct: 327 NKLIE--LPALPPRLERLIASFNHLAEVPELP----QNLKQLHVEYNPLREFPDIPESVE 380
Query: 157 -------LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLF 209
L + NL++L+++ N + P + L + R+
Sbjct: 381 DLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI----PESVEDLRMNSERVVDPYEFAH 436
Query: 210 LKLSKLKSLDLSYNDI 225
KL+ ++
Sbjct: 437 ETTDKLEDDVFEHHHH 452
Score = 43.8 bits (104), Expect = 8e-05
Identities = 6/62 (9%), Positives = 20/62 (32%), Gaps = 4/62 (6%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+L+ L++ N + ++++L ++ ++ L H+
Sbjct: 396 QNLKQLHVETNPLREF----PDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451
Query: 201 IS 202
Sbjct: 452 HH 453
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine
rich repeat domain, type three effector, salmonella
virulence factor; 1.90A {Salmonella typhimurium}
Length = 622
Score = 114 bits (287), Expect = 2e-27
Identities = 62/303 (20%), Positives = 109/303 (35%), Gaps = 46/303 (15%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
LN+ + +T+L D ++ L + N + S+P+ +LR L ++ N++
Sbjct: 41 GNAVLNVGESGLTTLPDCLPA---HITTLVIPDNNLTSLPAL----PPELRTLEVSGNQL 93
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
+ L P L L +L + + L L ++ +
Sbjct: 94 TSL-PVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQLTSLPVL----PP 141
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
L L + NQL L A +L L N L S LQ L + N+L
Sbjct: 142 GLQELSVSDNQLASLPA----LPSELCKLWAYNNQL-TSLPMLPSG---LQELSVSDNQL 193
Query: 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDK 381
A + T + L +L N+L L + + L++L +SGN + ++
Sbjct: 194 ASLPTL----PSELYKLWAYNNRLTSL-----PALPSGLKELIVSGNRLT-----SLPVL 239
Query: 382 LVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
+LK L ++ T +P L L++ N L + L T ++L N
Sbjct: 240 PSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLPESLIH-LSSETTVNLEGN 294
Query: 442 KFK 444
Sbjct: 295 PLS 297
Score = 108 bits (272), Expect = 2e-25
Identities = 64/329 (19%), Positives = 113/329 (34%), Gaps = 72/329 (21%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
H+ L I ++ + ++ P P LR L ++ N +TS L G++ L
Sbjct: 60 PAHITTLVIPDNNLTSLPALP----PELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT 114
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD 235
+ ++PS L L + N+++ L P L L+ L +S N + + +
Sbjct: 115 HLPALPSG-------LCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLASLPALPSE- 162
Query: 236 IQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
L + L ++ + + L L + NQL L +L KL
Sbjct: 163 ---LCKLWAYNNQLTSLPML----PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT 214
Query: 296 HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDP 355
P + L+ L + NRL T+ + L EL +S N+L L P
Sbjct: 215 SLPALPS-------GLKELIVSGNRL----TSLPVLPSELKELMVSGNRLTSL------P 257
Query: 356 IE-NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNL 414
+ + L L + N + T +P+ L + +NL
Sbjct: 258 MLPSGLLSLSVYRNQL-------------------------TRLPESLIHL-SSETTVNL 291
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
GN L + + ++T
Sbjct: 292 EGNPLSERTLQALR---EITSAPGYSGPI 317
Score = 93.8 bits (233), Expect = 2e-20
Identities = 44/250 (17%), Positives = 78/250 (31%), Gaps = 37/250 (14%)
Query: 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYS 258
R + + + L++ + + + + I L L ++
Sbjct: 26 GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTL---VIPDNNLTSLPA---- 78
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
+ +L L++ NQL L L +L H P + L L +
Sbjct: 79 LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFG 130
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378
N+L T+ L EL +S N+L S + + L L N + ++
Sbjct: 131 NQL----TSLPVLPPGLQELSVSDNQLA-----SLPALPSELCKLWAYNNQLT-----SL 176
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
L+ LS++D +P L L N L + L L L +
Sbjct: 177 PMLPSGLQELSVSDNQLASLPTLP----SELYKLWAYNNRLTSLPALP----SGLKELIV 228
Query: 439 SRNKFKGFDE 448
S N+
Sbjct: 229 SGNRLTSLPV 238
Score = 89.2 bits (221), Expect = 5e-19
Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 33/237 (13%)
Query: 105 NHLTIGPIFQQFQHLEELHITN---SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNF 161
N LT P L+EL +++ + +PA L L +N +TSL
Sbjct: 131 NQLTSLP--VLPPGLQELSVSDNQLASLPA-------LPSELCKLWAYNNQLTSLPM--- 178
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221
LQEL + N++ S+P+ S+L L +NR++ L P L S LK L +S
Sbjct: 179 -LPSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSL-PAL---PSGLKELIVS 229
Query: 222 YNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADEL 281
N + + ELK L ++ + + L+ L + NQL L + L
Sbjct: 230 GNRLTSLPVLP----SELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRL-PESL 280
Query: 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIEL 338
L T+ L+GN ++ R +A L
Sbjct: 281 IHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLA 337
Score = 51.4 bits (123), Expect = 4e-07
Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 17/131 (12%)
Query: 318 RNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN 377
R R A V L++ + L L D + + L I NN+ +
Sbjct: 25 RGRAAVVQKMRACLNNGNAVLNVGESGLTTLP----DCLPAHITTLVIPDNNL-----TS 75
Query: 378 VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLD 437
+ +L+ L ++ T +P + L + +L + + L L
Sbjct: 76 LPALPPELRTLEVSGNQLTSLPVLPPGL-LELSIFSNPLTHLPALPS-------GLCKLW 127
Query: 438 LSRNKFKGFDE 448
+ N+
Sbjct: 128 IFGNQLTSLPV 138
Score = 45.7 bits (108), Expect = 3e-05
Identities = 23/129 (17%), Positives = 44/129 (34%), Gaps = 10/129 (7%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N LT + L+EL ++ + + ++ P L L++ N +T L + + +
Sbjct: 231 NRLTS--LPVLPSELKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLPE-SLIHL 283
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKL---APRLFLKLSKLKSLDLS 221
+ + L+ N + ++ S R APR L + L
Sbjct: 284 SSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLV 343
Query: 222 YNDIVEINP 230
E P
Sbjct: 344 PAREGEPAP 352
Score = 27.9 bits (62), Expect = 9.0
Identities = 2/27 (7%), Positives = 9/27 (33%)
Query: 7 FMSKLKSLDLSYNDIVEINPEIFKDIQ 33
+ L++ + + + + I
Sbjct: 38 LNNGNAVLNVGESGLTTLPDCLPAHIT 64
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor
complex, developmental protein, domain, roundabout,
chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Length = 220
Score = 105 bits (263), Expect = 3e-26
Identities = 36/157 (22%), Positives = 60/157 (38%), Gaps = 24/157 (15%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
++ + L N I + F L+ + L N+I + F L L L L N+
Sbjct: 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I++L LF L L+ L L+ N I + + F+D+ L
Sbjct: 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL------------------- 132
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L L N+L+ + L+ ++T+ L N F
Sbjct: 133 -----LSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164
Score = 88.6 bits (220), Expect = 3e-20
Identities = 46/174 (26%), Positives = 79/174 (45%), Gaps = 14/174 (8%)
Query: 52 ASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGP 111
S+ CP C C+ + CR + IP + +++ N + + P
Sbjct: 1 GSLHCPAACTCS-----NNIVDCRGKGLTE-IPTN-LPETITEIRL-----EQNTIKVIP 48
Query: 112 --IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169
F ++ L + ++N+ I + F G+ SL L L N IT L F+G+ +LQ
Sbjct: 49 PGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQL 108
Query: 170 LYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
L L+ NKI + F L +L +LSL N++ +A F L ++++ L+ N
Sbjct: 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 88.2 bits (219), Expect = 3e-20
Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 2/130 (1%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
+ L++N + + AF+ L +D+S N++ L +F + + L L + GN I
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS-LNSLVLYGNKIT 93
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431
K++ + L L+ L + + F+ +L L+L N LQ I +
Sbjct: 94 -ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 432 KLTHLDLSRN 441
+ + L++N
Sbjct: 153 AIQTMHLAQN 162
Score = 86.6 bits (215), Expect = 1e-19
Identities = 38/168 (22%), Positives = 65/168 (38%), Gaps = 27/168 (16%)
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE 238
IP+++ + + L N I + P F KL+ +DLS N I E+ P+ F+ ++
Sbjct: 25 EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 239 LKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFP 298
L L L N++ L E L L+ LLL+ N
Sbjct: 82 LN------------------------SLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN 117
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
+ +F L +L L N+L + F+ L + + ++ N
Sbjct: 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
Score = 78.5 bits (194), Expect = 8e-17
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 25/153 (16%)
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
+ L N I I P F L +DL NQ+
Sbjct: 35 TEIRLEQNTIKVIPPGAFSP------------------------YKKLRRIDLSNNQISE 70
Query: 276 LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNL 335
L D + L+ L +L+L GN + + F F LQ+L L N++ + AF +L NL
Sbjct: 71 LAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNL 130
Query: 336 IELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
L + NKL + +F P+ +++ + ++ N
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLR-AIQTMHLAQN 162
Score = 78.2 bits (193), Expect = 1e-16
Identities = 39/174 (22%), Positives = 64/174 (36%), Gaps = 29/174 (16%)
Query: 244 CRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEK 303
CR GL I ++ + + L N +K + KKL + L N +
Sbjct: 18 CRGKGLTEIPT---NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDL 363
+F L L L N++ ++ + F L +L L ++ NK++ L V +F
Sbjct: 75 AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF---------- 124
Query: 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
L L LS+ D I KG F +Q ++L+ N
Sbjct: 125 ----------------QDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
Score = 37.7 bits (88), Expect = 0.004
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
IP G F L+ ++LS N + ++ +Q L L L NK
Sbjct: 45 KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93
Score = 29.2 bits (66), Expect = 2.7
Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
T+IP L + + L N ++ I + KL +DLS N+
Sbjct: 24 TEIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ 67
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain,
EF-hand domain; 1.6A {Listeria monocytogenes} SCOP:
b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A*
2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Length = 291
Score = 105 bits (263), Expect = 2e-25
Identities = 54/263 (20%), Positives = 104/263 (39%), Gaps = 19/263 (7%)
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDF 174
F + ++ + + S+ + +++I S+ + + N+ +L+L+
Sbjct: 22 AFAETIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNG 77
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
NK+ I +L +L L L N++ L+ L KLKSL L +N I +IN
Sbjct: 78 NKLTDI--KPLANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LV 131
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
+ +L++ + + +I + S L L L L NQ+ + L L KL+ L L
Sbjct: 132 HLPQLESLYLGNNKITDITVL--SRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSK 187
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
NH + ++ + L VL L +NL + + L E+ S D
Sbjct: 188 NHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDD 245
Query: 355 PIENSLRDLKISGNNIQLSDVKN 377
+ + + ++ +
Sbjct: 246 ---GDYEKPNVKWHLPEFTNEVS 265
Score = 99.4 bits (248), Expect = 2e-23
Identities = 59/321 (18%), Positives = 114/321 (35%), Gaps = 50/321 (15%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P I + ++ + L + + L+ + + ++
Sbjct: 2 PLGSETITVPTPIKQI--FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD 57
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
I + L + L L+ N + +I P L N L
Sbjct: 58 IKSVQG--IQYLPNVTKLFLNGNKLTDIKP------------------LAN--------L 89
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+L +L L N++K L L+DLKKL++L L+ N I +L+ L L N+
Sbjct: 90 KNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNK 145
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNV 378
+ + T + LT L L + N++ + P+ L++L +S N+I SD++
Sbjct: 146 ITDI--TVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNLYLSKNHI--SDLRA- 195
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
L L L L + + P + + +L + + ++
Sbjct: 196 LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII--SDDGDYEKPNV 253
Query: 439 SRNKFKGFDEKSYIMSEPKNI 459
+ + +E S+I +P I
Sbjct: 254 KWHLPEFTNEVSFIFYQPVTI 274
Score = 86.3 bits (214), Expect = 6e-19
Identities = 41/231 (17%), Positives = 86/231 (37%), Gaps = 12/231 (5%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
Q ++ +L + + + I P + +L +L L N + L + K + L+ L L
Sbjct: 64 IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSL 119
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
+ N I I + +HL L L L +N+I+ + +L+KL +L L N I +I P
Sbjct: 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP-- 173
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
+ +L+ + ++ + L +L L+L + + +L T+
Sbjct: 174 LAGLTKLQNLYLSKNHISDLRALAG--LKNLDVLELFSQECLNKPINHQSNLVVPNTVKN 231
Query: 293 DGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
S ++ + + F + + ++
Sbjct: 232 TDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFH 282
Score = 72.8 bits (179), Expect = 2e-14
Identities = 35/172 (20%), Positives = 64/172 (37%), Gaps = 10/172 (5%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N + + + L+ L + ++ I I + +P L L L +N IT + +
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDIT--VLSRL 155
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L L L+ N+I I L+ L+ L L+ N IS L L L L+L +
Sbjct: 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276
+ ++ T K L + S D ++ ++ ++
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEII--SDDGDYEKPNVKWHLPEFT 261
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity,
antibody, T cell, leucine-rich repeat, immune system;
1.70A {Petromyzon marinus} PDB: 3m18_A
Length = 251
Score = 98.2 bits (245), Expect = 2e-23
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 24/174 (13%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
L+L + +L D F+G+ L L LD+N+++++ + VF L++L L LA+N+++ L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
+F L++L L L N + + +F L L
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------LTKLKE 135
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L L NQL+ + A + L L+TL L N + +F KLQ + L N
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
Score = 95.1 bits (237), Expect = 2e-22
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 24/178 (13%)
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
E+L + ++ + + F G+ L +LNL +N + +L F + L L L N++ S
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+P VF HL+ L L L N++ L +F +L+KLK L L+ N + I F
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK---- 153
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L +L L L NQL+ + + L KL+T+ L GN F
Sbjct: 154 --------------------LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 84.4 bits (209), Expect = 1e-18
Identities = 56/202 (27%), Positives = 76/202 (37%), Gaps = 29/202 (14%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
K C+ L+++ I AD LDL L L L KL L LD N
Sbjct: 17 KEVDCQGKSLDSVPS---GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT 73
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
+ F +L L L N+LA + F +LT L +L + N+L L
Sbjct: 74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLP---------- 123
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
V D+L KLK L + IP G F +LQ L+LS N L
Sbjct: 124 ----------------SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQL 167
Query: 420 QDIHNLLYQSNIKLTHLDLSRN 441
Q + + + KL + L N
Sbjct: 168 QSVPHGAFDRLGKLQTITLFGN 189
Score = 77.8 bits (192), Expect = 2e-16
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 17/169 (10%)
Query: 91 GTEV------LKIVPS---------EENPNHLTIGP--IFQQFQHLEELHITNSFIPAIG 133
EV L VPS + L F+ L L++ + + +
Sbjct: 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75
Query: 134 FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193
F + L L L +N + SL F + L +LYL N+++S+PS VF L+ L+
Sbjct: 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKE 135
Query: 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
L L N++ + F KL+ L++L LS N + + F + +L+T
Sbjct: 136 LRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184
Score = 74.7 bits (184), Expect = 2e-15
Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 49/201 (24%)
Query: 168 QELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVE 227
++L L + ++ + F L+ L L+L +N++ L+ +F L++L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG----------- 86
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKL 287
L L NQL L + L +L
Sbjct: 87 -------------------------------------TLGLANNQLASLPLGVFDHLTQL 109
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
+ L L GN + F KL+ L L N+L + AF LTNL L +S N+L
Sbjct: 110 DKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS 169
Query: 348 LEVASFDPIENSLRDLKISGN 368
+ +FD + L+ + + GN
Sbjct: 170 VPHGAFDRLG-KLQTITLFGN 189
Score = 60.9 bits (148), Expect = 1e-10
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 26/133 (19%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
+ L L+ LA ++ F LT L L++ YN+L L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA--------------------- 76
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431
V D L +L L +A+ +P G+F L L L GN L+ + + ++
Sbjct: 77 -----GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLT 131
Query: 432 KLTHLDLSRNKFK 444
KL L L+ N+ +
Sbjct: 132 KLKELRLNTNQLQ 144
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis,
glycoprotein, secreted, chemotaxis, LRR structural
protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Length = 220
Score = 95.5 bits (238), Expect = 1e-22
Identities = 33/105 (31%), Positives = 55/105 (52%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
F +P LR +N ++N IT + + F+G + E+ L N++E++ +F L L+ L L
Sbjct: 53 FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
NRI+ + F+ LS ++ L L N I + P F + L T
Sbjct: 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157
Score = 94.3 bits (235), Expect = 3e-22
Identities = 33/133 (24%), Positives = 63/133 (47%), Gaps = 1/133 (0%)
Query: 166 NLQELYLDFNKIESIPSS-VFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
EL L+ N+ + ++ +F L LR ++ ++N+I+ + F S + + L+ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ + ++FK ++ LKT RS + + + L+ + L L NQ+ + + L
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 285 KKLETLLLDGNHF 297
L TL L N F
Sbjct: 153 HSLSTLNLLANPF 165
Score = 83.9 bits (208), Expect = 9e-19
Identities = 28/132 (21%), Positives = 55/132 (41%), Gaps = 5/132 (3%)
Query: 312 QVLCLKRNRLAKVTTTA-FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L L N + T F L L +++ S NK+ +E +F+ + ++ ++ N
Sbjct: 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG-VNEILLTSN-- 91
Query: 371 QLSDV-KNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQS 429
+L +V + L LK L + T + F ++ L+L N + + + +
Sbjct: 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDT 151
Query: 430 NIKLTHLDLSRN 441
L+ L+L N
Sbjct: 152 LHSLSTLNLLAN 163
Score = 79.3 bits (196), Expect = 4e-17
Identities = 36/169 (21%), Positives = 65/169 (38%), Gaps = 28/169 (16%)
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPR-LFLKLSKLKSLDLSYNDIVEINPEIFKDIQ 237
IP + L L +N + L +F KL +L+ ++ S N I +I F+
Sbjct: 25 KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS 81
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
+ + L N+L+ + + L+ L+TL+L N
Sbjct: 82 GVN------------------------EILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
+ SF +++L L N++ V AF L +L L++ N +
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
Score = 71.2 bits (175), Expect = 3e-14
Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 26/154 (16%)
Query: 216 KSLDLSYNDIVEINPE-IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
L L+ N+ + IFK L L ++ N++
Sbjct: 35 AELRLNNNEFTVLEATGIFKK------------------------LPQLRKINFSNNKIT 70
Query: 275 YLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTN 334
+ E + +LL N + K F L+ L L+ NR+ V +F L++
Sbjct: 71 DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130
Query: 335 LIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
+ L + N++ + +FD + SL L + N
Sbjct: 131 VRLLSLYDNQITTVAPGAFDTLH-SLSTLNLLAN 163
Score = 50.8 bits (122), Expect = 2e-07
Identities = 17/84 (20%), Positives = 43/84 (51%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
+L+++ N + + + KL +L+ ++ ++ TDI +G F+ + + L+ N
Sbjct: 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92
Query: 419 LQDIHNLLYQSNIKLTHLDLSRNK 442
L+++ + +++ L L L N+
Sbjct: 93 LENVQHKMFKGLESLKTLMLRSNR 116
Score = 38.5 bits (90), Expect = 0.002
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 399 PKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEK 449
G+FK P L+ +N S N + DI ++ + + L+ N+ + K
Sbjct: 49 ATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99
Score = 37.3 bits (87), Expect = 0.005
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%)
Query: 103 NPNHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN 160
N L +F+ + L+ L + ++ I +G F G+ S+R L+L N IT++
Sbjct: 89 TSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148
Query: 161 FKGMMNLQELYLDFN 175
F + +L L L N
Sbjct: 149 FDTLHSLSTLNLLAN 163
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell
invasion; 2.05A {Listeria monocytogenes}
Length = 263
Score = 94.7 bits (236), Expect = 4e-22
Identities = 52/237 (21%), Positives = 88/237 (37%), Gaps = 39/237 (16%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ NL ++T L+ + K + +Q D + I+S+ ++L+ L L+HN+
Sbjct: 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ 74
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
IS L+P L+KL+ L ++ N + +N + +
Sbjct: 75 ISDLSP--LKDLTKLEELSVNRNRLKNLNG------------------IPSAC------- 107
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
L L L N+L+ D L LK LE L + N I KL+VL L N
Sbjct: 108 --LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNE 161
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN 377
+ T L + +D++ K V + + G I + N
Sbjct: 162 ITNTG--GLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISN 216
Score = 84.3 bits (209), Expect = 2e-18
Identities = 41/184 (22%), Positives = 75/184 (40%), Gaps = 19/184 (10%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
LA+ + +LG + L ++L ++ D ++ + L+ L L N
Sbjct: 18 LANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHN 73
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN-SLRDLKISGNNIQLSDVKNV 378
+++ ++ +LT L EL ++ N+L L I + L L + N + D +
Sbjct: 74 QISDLS--PLKDLTKLEELSVNRNRLKNLN-----GIPSACLSRLFLDNNEL--RDTDS- 123
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDL 438
L L L+ LSI + I L+ L+L GN + + L K+ +DL
Sbjct: 124 LIHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNEITNTGGL--TRLKKVNWIDL 179
Query: 439 SRNK 442
+ K
Sbjct: 180 TGQK 183
Score = 58.5 bits (142), Expect = 7e-10
Identities = 15/111 (13%), Positives = 37/111 (33%), Gaps = 6/111 (5%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE 178
L L + N+ + + +L L++ +N + S+ + L+ L L N+I
Sbjct: 108 LSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN 229
+ L + + L + + +L ++ +
Sbjct: 164 NT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212
Score = 57.0 bits (138), Expect = 2e-09
Identities = 18/114 (15%), Positives = 46/114 (40%), Gaps = 15/114 (13%)
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
L N ++ ++ + L + +++ +NI + + LK L
Sbjct: 17 GLANAVKQNLGKQSVTDLV-----SQKELSGVQNFNGDNSNI--QSLAG-MQFFTNLKEL 68
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
++ +D+ K L+ L+++ N L++++ + + L+ L L N+
Sbjct: 69 HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGI---PSACLSRLFLDNNE 117
Score = 45.0 bits (107), Expect = 2e-05
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
++ V L ++ + TD+ K +Q N +N+Q + +
Sbjct: 5 RPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAGM-- 59
Query: 428 QSNIKLTHLDLSRNK 442
Q L L LS N+
Sbjct: 60 QFFTNLKELHLSHNQ 74
Score = 28.1 bits (63), Expect = 6.4
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 2/76 (2%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N L + LE L + + I + + +++LT + +
Sbjct: 138 NKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPEL 195
Query: 165 MNLQELYLDFNKIESI 180
+ + S
Sbjct: 196 YITNTVKDPDGRWISP 211
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, LRR, N- and
C-terminal helices; 2.00A {Xanthomonas campestris PV}
Length = 328
Score = 94.6 bits (236), Expect = 1e-21
Identities = 52/313 (16%), Positives = 90/313 (28%), Gaps = 49/313 (15%)
Query: 142 SLRYLNLTH-NNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
L + + Q Y + ++ ++ +
Sbjct: 13 GRENLYFQGSTALRPY----HDVLSQWQRHYNADRNRWHSAWR-QANSNNPQIETRTGRA 67
Query: 201 ISKLAPRL-FLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
+ A L +L+L + + P+ + L+ + GL + P
Sbjct: 68 LKATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMEL-PDTMQQ 125
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
A L L L N L+ L + L +L L + L + +S
Sbjct: 126 FAGLETLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ---- 180
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE----NSLRDLKISGNNIQLSDV 375
L NL L + + + L P +L+ LKI + LS +
Sbjct: 181 -----------GLVNLQSLRLEWTGIRSL------PASIANLQNLKSLKIRNS--PLSAL 221
Query: 376 KNVLDKLVKLKALSIADMNY-TDIPKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQS 429
+ L KL+ L + + P L+ L L + DIH L
Sbjct: 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRL---- 276
Query: 430 NIKLTHLDLSRNK 442
+L LDL
Sbjct: 277 -TQLEKLDLRGCV 288
Score = 93.1 bits (232), Expect = 4e-21
Identities = 52/356 (14%), Positives = 100/356 (28%), Gaps = 92/356 (25%)
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL--LDYNFKG--M 164
+ P + + + H W + + +L +
Sbjct: 25 LRPYHDVLSQWQRHYNADRNRW----HSAWRQANSNNPQIETRTGRALKATADLLEDATQ 80
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
L L + P F LS L+ +++ + +L P + + L++L L+ N
Sbjct: 81 PGRVALELRSVPLPQFPDQAF-RLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARNP 138
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL-GYNQLKYL------- 276
+ + I L L L + +L L
Sbjct: 139 LRALPASIAS-------------------------LNRLRELSIRACPELTELPEPLAST 173
Query: 277 -LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNL 335
+ E + L L++L L+ ++ L + NL NL
Sbjct: 174 DASGEHQGLVNLQSLRLEWT--------------GIRSLP-----------ASIANLQNL 208
Query: 336 IELDISYNKLDRLEVASFDPIE----NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIA 391
L I + L L L +L + G L + + LK L +
Sbjct: 209 KSLKIRNSPLSAL------GPAIHHLPKLEELDLRGCT-ALRNYPPIFGGRAPLKRLILK 261
Query: 392 DMNY-TDIPKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQSNIKLTHLDLSRN 441
D + +P + ++ L+ L+L G I L + + +
Sbjct: 262 DCSNLLTLPLDIHRL-TQLEKLDLRGCVNLSRLPSLIAQL-----PANCIILVPPH 311
Score = 74.6 bits (184), Expect = 7e-15
Identities = 43/269 (15%), Positives = 86/269 (31%), Gaps = 29/269 (10%)
Query: 187 HLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS 246
H S L + + + + + + D + + + +
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWH----SAWRQANSNNPQIETRTG 65
Query: 247 CGLENI-NPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSF 305
L+ + + + + L+L L D+ L L+ + +D + L +
Sbjct: 66 RALKATADLLEDATQPGRVALELRSVPLPQFP-DQAFRLSHLQHMTIDAAGL-MELPDTM 123
Query: 306 SSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISY-NKLDRL--EVASFDPIEN---- 358
L+ L L RN L + + +L L EL I +L L +AS D
Sbjct: 124 QQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182
Query: 359 -SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
+L+ L++ + + + L LK+L I + + + + + L+ L+L G
Sbjct: 183 VNLQSLRLEWT--GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLP-KLEELDLRGC 239
Query: 418 NL-----QDIHNLLYQSNIKLTHLDLSRN 441
L L L
Sbjct: 240 TALRNYPPIFGGR-----APLKRLILKDC 263
Score = 72.7 bits (179), Expect = 3e-14
Identities = 48/222 (21%), Positives = 82/222 (36%), Gaps = 44/222 (19%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHP--FWGVPSLRYLNLTHNN-ITSL--------LDYNF 161
QQF LE L + + + A+ P + LR L++ +T L
Sbjct: 123 MQQFAGLETLTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASGEH 179
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221
+G++NLQ L L++ I S+P+S+ +L +L+ L + ++ +S L L KL+ LDL
Sbjct: 180 QGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLR 237
Query: 222 Y-NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL-GYNQLKYLLAD 279
+ P A L L L + L L
Sbjct: 238 GCTALRNYPPIFGG-------------------------RAPLKRLILKDCSNLLT-LPL 271
Query: 280 ELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
++ L +LE L L G L + ++ + +
Sbjct: 272 DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313
Score = 65.7 bits (161), Expect = 5e-12
Identities = 38/292 (13%), Positives = 70/292 (23%), Gaps = 94/292 (32%)
Query: 166 NLQELYL-DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
+ LY + LS + A + + +
Sbjct: 13 GRENLYFQGSTALRPYHDV----LSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRA 67
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDL 284
+ ++ +D + + L+L L D+ L
Sbjct: 68 LKAT-ADLLEDATQPG----------------------RVALELRSVPLPQFP-DQAFRL 103
Query: 285 KKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK 344
L+ + +D + + L L ++ N
Sbjct: 104 SHLQHMTIDAAGLMELPD-------------------------TMQQFAGLETLTLARNP 138
Query: 345 LDRLEVASFDPIE----NSLRDLKISGNNIQLSDVKNVLDKLVKLKAL--SIADMNYTDI 398
L L P N LR+L I +L L +A + +
Sbjct: 139 LRAL------PASIASLNRLRELSIRACP--------------ELTELPEPLASTDASGE 178
Query: 399 PKGLFKMNPHLQFLNLSGNNLQ----DIHNLLYQSNIKLTHLDLSRNKFKGF 446
+GL +LQ L L ++ I NL L L + +
Sbjct: 179 HQGL----VNLQSLRLEWTGIRSLPASIANL-----QNLKSLKIRNSPLSAL 221
Score = 61.1 bits (149), Expect = 2e-10
Identities = 28/146 (19%), Positives = 57/146 (39%), Gaps = 8/146 (5%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH-NR 200
+L+ L L I SL + + NL+ L + + + ++ ++ HL L L L
Sbjct: 184 NLQSLRLEWTGIRSLPA-SIANLQNLKSLKIRNSPLSALGPAIH-HLPKLEELDLRGCTA 241
Query: 201 ISKLAPRLFLKLSKLKSLDLS-YNDIVEINPEIFKDIQELKTFKCRSC-GLENINPMMYS 258
+ P +F + LK L L ++++ + P + +L+ R C L + P + +
Sbjct: 242 LRNY-PPIFGGRAPLKRLILKDCSNLLTL-PLDIHRLTQLEKLDLRGCVNLSRL-PSLIA 298
Query: 259 ILADLIYLDLGYNQLKYLLADELEDL 284
L + + + L
Sbjct: 299 QLPANCIILVPPHLQAQLDQHRPVAR 324
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold,
ligase; 2.80A {Shigella flexneri 2A}
Length = 571
Score = 97.0 bits (241), Expect = 1e-21
Identities = 56/322 (17%), Positives = 94/322 (29%), Gaps = 46/322 (14%)
Query: 148 LTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
L NN SL +N I + F +L ++
Sbjct: 5 LPINNNFSL------------SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSL 52
Query: 208 LF-LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
L +++ L L+ ++ + + I L + L ++ + A L YL
Sbjct: 53 LKECLINQFSELQLNRLNLSSLPDNLPPQITVL---EITQNALISLPEL----PASLEYL 105
Query: 267 DLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQF-KLQVLCLKRNRLAKVT 325
D N+L L E L+ L +D N L+ + N+L +
Sbjct: 106 DACDNRLSTL----PELPASLKHLDVDNNQL-----TMLPELPALLEYINADNNQLTMLP 156
Query: 326 TTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKL 385
T+L L + N+L L + SL L +S N L + V +
Sbjct: 157 EL----PTSLEVLSVRNNQLTFL-----PELPESLEALDVSTN--LLESLPAVPVRNHHS 205
Query: 386 KALSIA-DMNY---TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
+ I T IP+ + + + L N L R
Sbjct: 206 EETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRI 264
Query: 442 KFKGFDEKSYIMSEPKNIHKAA 463
F D + + P A
Sbjct: 265 YFSMSDGQQNTLHRPLADAVTA 286
Score = 94.3 bits (234), Expect = 1e-20
Identities = 45/313 (14%), Positives = 100/313 (31%), Gaps = 40/313 (12%)
Query: 96 KIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITS 155
K EN N EL + + ++ P P + L +T N + S
Sbjct: 38 KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSL---PDNLPPQITVLEITQNALIS 94
Query: 156 L-----------LDYNF-----KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
L N + +L+ L +D N++ +P + L ++ +N
Sbjct: 95 LPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPEL----PALLEYINADNN 150
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPM---M 256
+++ L + L+ L + N + + PE+ + L+ + LE++ +
Sbjct: 151 QLTMLPE----LPTSLEVLSVRNNQLTFL-PEL---PESLEALDVSTNLLESLPAVPVRN 202
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
+ I+ N++ + + + + L T++L+ N + +S S Q
Sbjct: 203 HHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVK 376
R + N + ++ + + + S
Sbjct: 262 PRIYF-----SMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFL 316
Query: 377 NVLDKLVKLKALS 389
+ L V + S
Sbjct: 317 DRLSDTVSARNTS 329
Score = 28.4 bits (63), Expect = 5.8
Identities = 3/28 (10%), Positives = 11/28 (39%)
Query: 6 IFMSKLKSLDLSYNDIVEINPEIFKDIQ 33
+++ L L+ ++ + + I
Sbjct: 56 CLINQFSELQLNRLNLSSLPDNLPPQIT 83
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 95.0 bits (237), Expect = 3e-21
Identities = 57/357 (15%), Positives = 110/357 (30%), Gaps = 60/357 (16%)
Query: 142 SLRYLNLTHNNIT-----SLLDYNFKGMMNLQELYLDFNKI-----ESIPSSVFMHLSDL 191
++ L++ ++ LL + Q + LD + + I SS L
Sbjct: 4 DIQSLDIQCEELSDARWAELL----PLLQQCQVVRLDDCGLTEARCKDI-SSALRVNPAL 58
Query: 192 RVLSLAHNRIS-----KLAPRLFLKLSKLKSLDLSYNDI----VEINPEIFKDIQELKTF 242
L+L N + + L K++ L L + + + + L+
Sbjct: 59 AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118
Query: 243 KCRSC-----GLENINPMMYSILADLIYLDLGYNQLKY----LLADELEDLKKLETLLLD 293
GL+ + + L L L Y L LA L + L +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178
Query: 294 GNHF-----PVILEKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNK 344
N V+ + S +L+ L L+ + + + +L EL + NK
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238
Query: 345 LD----RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI-- 398
L + LR L I I ++ L ++L + ++
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGD 298
Query: 399 ------PKGLFKMNPHLQFLNLSGNNL-----QDIHNLLYQSNIKLTHLDLSRNKFK 444
+ L + L+ L + + ++L N L L +S N+ +
Sbjct: 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-AQNRFLLELQISNNRLE 354
Score = 90.0 bits (224), Expect = 2e-19
Identities = 65/390 (16%), Positives = 128/390 (32%), Gaps = 73/390 (18%)
Query: 117 QHLEELHITNSFIPAIGFHPFW-GVPSLRYLNLTHNNIT----SLLDYNFKGMMNLQELY 171
++ L I + + + + + L +T + + L EL
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 172 LDFNKIESIPSSVFMHLSD--------LRVLSLAHNRISK-----LAPRLFLKLSKLKSL 218
L N++ + ++ LSL + ++ L+ L L+ L
Sbjct: 63 LRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLS-STLRTLPTLQEL 118
Query: 219 DLSYNDIVEINPEIFKDIQELKTFKCRSCGLE-------NINPMMYSILAD-------LI 264
LS N + + ++ + C LE +++ LA
Sbjct: 119 HLSDNLLGDAGLQLL-----CEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFK 173
Query: 265 YLDLGYNQLK----YLLADELEDLK-KLETLLLDGNHFP----VILEKSFSSQFKLQVLC 315
L + N + +L L+D +LE L L+ L +S+ L+ L
Sbjct: 174 ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233
Query: 316 LKRNRL----AKVTTTAFTN-LTNLIELDISYNKLDR---LEVASFDPIENSLRDLKISG 367
L N+L + + L L I + ++ + SL++L ++G
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293
Query: 368 NNIQLSDVKNVLDKLVK----LKALSIADMNYTD-----IPKGLFKMNPHLQFLNLSGNN 418
N + + + + L++ L++L + ++T L N L L +S N
Sbjct: 294 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL-AQNRFLLELQISNNR 352
Query: 419 LQD-----IHNLLYQSNIKLTHLDLSRNKF 443
L+D + L Q L L L+
Sbjct: 353 LEDAGVRELCQGLGQPGSVLRVLWLADCDV 382
Score = 85.4 bits (212), Expect = 6e-18
Identities = 67/375 (17%), Positives = 125/375 (33%), Gaps = 70/375 (18%)
Query: 118 HLEELHITNSFIPAIGFHPFWGV----PSLRYLNLTHNNIT-----SLLDYNFKGMMNLQ 168
+++L + N + G P+L+ L+L+ N + L + L+
Sbjct: 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 145
Query: 169 ELYLDFNKIESIP----SSVFMHLSDLRVLSLAHNRIS-----KLAPRLFLKLSKLKSLD 219
+L L++ + + +SV D + L++++N I+ L L +L++L
Sbjct: 146 KLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK 205
Query: 220 LSYNDI----VEINPEIFKDIQELKTFKCRSC-----GLENINPMMYSILADLIYLDLGY 270
L + I L+ S G+ + P + + L L +
Sbjct: 206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265
Query: 271 NQLKY----LLADELEDLKKLETLLLDGNHF-----PVILEKSFSSQFKLQVLCLKRNRL 321
+ L L + L+ L L GN ++ E +L+ L +K
Sbjct: 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325
Query: 322 ----AKVTTTAFTNLTNLIELDISYNKLD----RLEVASFDPIENSLRDLKISGNNIQLS 373
++ L+EL IS N+L+ R + LR L ++ ++ S
Sbjct: 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDS 385
Query: 374 DVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD-----IHNLLYQ 428
S+A N L+ L+LS N L D + + Q
Sbjct: 386 S------------CSSLAAT---------LLANHSLRELDLSNNCLGDAGILQLVESVRQ 424
Query: 429 SNIKLTHLDLSRNKF 443
L L L +
Sbjct: 425 PGCLLEQLVLYDIYW 439
Score = 43.4 bits (103), Expect = 1e-04
Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 23/142 (16%)
Query: 118 HLEELHITNSFIPAIGFHPFWGV----PSLRYLNLTHNNIT-----SLLDYNFKGMMNLQ 168
LE L + + A F V L L +++N + L + L+
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLR 373
Query: 169 ELYLDFNKI-----ESIPSSVFMHLSDLRVLSLAHNRIS-----KLAPRLFLKLSKLKSL 218
L+L + S+ ++ + LR L L++N + +L + L+ L
Sbjct: 374 VLWLADCDVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQL 432
Query: 219 DLSYNDIVEINPEIFKDIQELK 240
L + E+ +Q L+
Sbjct: 433 VLYDI---YWSEEMEDRLQALE 451
Score = 33.4 bits (77), Expect = 0.17
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 405 MNPHLQFLNLSGNNLQDIH-NLLYQSNIKLTHLDLSRNKF 443
M+ +Q L++ L D L + + L
Sbjct: 1 MSLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL 40
>3jqh_A C-type lectin domain family 4 member M; DC-signr, four-helix
bundle, oligomerization domain, alternative splicing,
calcium, cell membrane; 2.20A {Homo sapiens}
Length = 167
Score = 88.7 bits (221), Expect = 7e-21
Identities = 26/208 (12%), Positives = 57/208 (27%), Gaps = 54/208 (25%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P L + +T L + +L + ++ + ++V L + L +
Sbjct: 4 PEKSKLQEIYQELTRLKA-AVGELPEKSKLQEIYQELTRLKAAVG-ELPEKSKLQEIYQE 61
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+++L +L + L Y ++ + + + L
Sbjct: 62 LTRL-KAAVGELPEKSKLQEIYQELTRLKAAVGE-------------------------L 95
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
+ L Y +L L + +L + L +L L
Sbjct: 96 PEKSKLQEIYQELTE-LKAAVGELPEKSKLQEIYQ--------------ELTQL------ 134
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRL 348
A L + + Y +L L
Sbjct: 135 -----KAAVGELPDQSKQQQIYQELTDL 157
Score = 74.0 bits (183), Expect = 9e-16
Identities = 25/196 (12%), Positives = 51/196 (26%), Gaps = 40/196 (20%)
Query: 211 KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGY 270
+L + L Y ++ + + + L + L Y
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGE-------------------------LPEKSKLQEIY 36
Query: 271 NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFT 330
+L L + +L + L L+ + + L L ++ A
Sbjct: 37 QELTR-LKAAVGELPEKSKLQEIYQEL-TRLKAAVGELPEKSKLQEIYQELTRL-KAAVG 93
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIE----NSLRDLKISGNNIQLSDVKNVLDKLVKLK 386
L +L Y +L L L+ +L+ +K + +L
Sbjct: 94 ELPEKSKLQEIYQELTEL------KAAVGELPEKSKLQEIYQ--ELTQLKAAVGELPDQS 145
Query: 387 ALSIADMNYTDIPKGL 402
TD+
Sbjct: 146 KQQQIYQELTDLKTAF 161
Score = 69.4 bits (171), Expect = 3e-14
Identities = 27/191 (14%), Positives = 50/191 (26%), Gaps = 44/191 (23%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L + L Y +L L + +L + L +L L
Sbjct: 3 LPEKSKLQEIYQELTRL-KAAVGELPEKSKLQEIYQ--------------ELTRLK---- 43
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRL--EVASFDPIENSLRDLKISGNNIQLSDVKN 377
A L +L Y +L RL V L+ +L+ +K
Sbjct: 44 -------AAVGELPEKSKLQEIYQELTRLKAAVGEL----PEKSKLQEIYQ--ELTRLKA 90
Query: 378 VLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ----DIHNLLYQSNIKL 433
+ +L + L T++ + ++ P L L + L
Sbjct: 91 AVGELPEKSKLQEIYQELTELKAAVGEL-PEKSKLQEIYQELTQLKAAVGEL-----PDQ 144
Query: 434 THLDLSRNKFK 444
+ +
Sbjct: 145 SKQQQIYQELT 155
Score = 69.4 bits (171), Expect = 4e-14
Identities = 16/133 (12%), Positives = 41/133 (30%), Gaps = 13/133 (9%)
Query: 105 NHLTIGPI-FQQFQHLEELHITNSFI----PAIGFHPFWGVPSLRYLNLTHNNITSLLDY 159
LT + +L + A+G +P L + +T L
Sbjct: 37 QELTRLKAAVGELPEKSKLQEIYQELTRLKAAVG-----ELPEKSKLQEIYQELTRLKA- 90
Query: 160 NFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLD 219
+ +L + ++ + ++V L + L + +++L +L
Sbjct: 91 AVGELPEKSKLQEIYQELTELKAAVG-ELPEKSKLQEIYQELTQL-KAAVGELPDQSKQQ 148
Query: 220 LSYNDIVEINPEI 232
Y ++ ++
Sbjct: 149 QIYQELTDLKTAF 161
Score = 40.9 bits (97), Expect = 2e-04
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 4/88 (4%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
L+ +L+ +K + +L + L T + + ++ P L
Sbjct: 5 EKSKLQEIYQ--ELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGEL-PEKSKLQEIYQE 61
Query: 419 LQDIHNLLYQSNIKLTHLDLSRNKFKGF 446
L + + + + + L +
Sbjct: 62 LTRLKAAVGELP-EKSKLQEIYQELTRL 88
Score = 34.4 bits (80), Expect = 0.037
Identities = 8/68 (11%), Positives = 18/68 (26%), Gaps = 10/68 (14%)
Query: 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ----DIHNLLYQSNIKLTHL 436
+L + L T + + ++ P L L + L + + L
Sbjct: 2 ELPEKSKLQEIYQELTRLKAAVGEL-PEKSKLQEIYQELTRLKAAVGEL-----PEKSKL 55
Query: 437 DLSRNKFK 444
+
Sbjct: 56 QEIYQELT 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 91.2 bits (227), Expect = 8e-21
Identities = 54/193 (27%), Positives = 87/193 (45%), Gaps = 26/193 (13%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N + + Q ++ L + + + I + +L YL LT N + SL + F
Sbjct: 49 NNSDIKSVQGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFD 106
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ NL+EL L N+++S+P VF L++L L+LAHN++ L +F KL+ L LDLSY
Sbjct: 107 KLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSY 166
Query: 223 NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELE 282
N + + +F + +LK L L NQLK + +
Sbjct: 167 NQLQSLPEGVFDKLTQLKD------------------------LRLYQNQLKSVPDGVFD 202
Query: 283 DLKKLETLLLDGN 295
L L+ + L N
Sbjct: 203 RLTSLQYIWLHDN 215
Score = 83.9 bits (208), Expect = 2e-18
Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 34/227 (14%)
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
+L + + ++ + + ++++ L ++ YL LG N+L
Sbjct: 22 IKANLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHD 77
Query: 276 LLA-DELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTN 334
+ A EL +L L L GN + F L+ L L N+L + F LTN
Sbjct: 78 ISALKELTNLTYLI---LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTN 134
Query: 335 LIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMN 394
L L++++N+L L F DKL L L ++
Sbjct: 135 LTYLNLAHNQLQSLPKGVF--------------------------DKLTNLTELDLSYNQ 168
Query: 395 YTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRN 441
+P+G+F L+ L L N L+ + + ++ L ++ L N
Sbjct: 169 LQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 80.8 bits (200), Expect = 3e-17
Identities = 49/205 (23%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
+T + + A+ I +L + + +L ++ ++ + +
Sbjct: 1 ETITVSTPIKQIFPD---DAFAETIKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS 55
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
+ + ++ L L N+L ++ A LTNL L ++ N+L L FD + N
Sbjct: 56 V--QGIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTN- 110
Query: 360 LRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
L++L + N +Q S V DKL L L++A +PKG+F +L L+LS N L
Sbjct: 111 LKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL 169
Query: 420 QDIHNLLYQSNIKLTHLDLSRNKFK 444
Q + ++ +L L L +N+ K
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLK 194
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET:
NAG; 2.50A {Mus musculus}
Length = 312
Score = 87.3 bits (216), Expect = 3e-19
Identities = 47/244 (19%), Positives = 83/244 (34%), Gaps = 22/244 (9%)
Query: 119 LEELHITNSFIPAIGFHP---FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
L+ L + + IP+ G+ L+ L L + +T L+
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 176 KIE------SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN----DI 225
+ + L+VLS+A + L +LDLS N +
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILAD---LIYLDLGYNQLKYLLADEL- 281
I+ L+ R+ G+E + + ++ A L LDL +N L+
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341
+ +L +L L + + + KL VL L NRL + + L + L +
Sbjct: 250 DWPSQLNSLNLSFTGLKQVPKGLPA---KLSVLDLSYNRLDRN--PSPDELPQVGNLSLK 304
Query: 342 YNKL 345
N
Sbjct: 305 GNPF 308
Score = 86.1 bits (213), Expect = 7e-19
Identities = 61/330 (18%), Positives = 101/330 (30%), Gaps = 63/330 (19%)
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDY-NFKGMMNLQELYLDFNKIESI---PSSV 184
+ A + G SL YL + L + + ++L+ L + +I S +
Sbjct: 31 LGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALR 90
Query: 185 FMHLSDLRVLSLAHNRISKLAPR--LFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
+ +S L+ L+L + ++ AP L L L+L + + + Q LK
Sbjct: 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP- 149
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF----P 298
L L + +++ L TL L N
Sbjct: 150 -------------------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTA---FTNLTNLIELDISYNKLDRLEVASFDP 355
+I LQVL L+ + + L LD+S+N L A
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
+ L L +S + +PKGL L L+LS
Sbjct: 251 WPSQLNSLNLSFTGL-------------------------KQVPKGLP---AKLSVLDLS 282
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445
N L + + +L L N F
Sbjct: 283 YNRLDRNPSPDELPQ--VGNLSLKGNPFLD 310
Score = 73.8 bits (181), Expect = 1e-14
Identities = 38/189 (20%), Positives = 63/189 (33%), Gaps = 37/189 (19%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYN----FKGMMNLQELYL 172
L+ L I + P+L L+L+ N LQ L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208
Query: 173 DFNKIESIP---SSVFMHLSDLRVLSLAHNRISKLAPRL-FLKLSKLKSLDLSYNDIVEI 228
+E+ S++ L+ L L+HN + A S+L SL+LS+ + ++
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQV 268
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE 288
+ + LDL YN+L ++L ++
Sbjct: 269 PKGLPAKLSV---------------------------LDLSYNRLDRN--PSPDELPQVG 299
Query: 289 TLLLDGNHF 297
L L GN F
Sbjct: 300 NLSLKGNPF 308
Score = 68.8 bits (168), Expect = 5e-13
Identities = 26/126 (20%), Positives = 45/126 (35%), Gaps = 11/126 (8%)
Query: 111 PIFQQFQHLEELHITN----SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDY---NFKG 163
+ F L L +++ I P+L+ L L + + +
Sbjct: 167 EQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA 226
Query: 164 MMNLQELYLDFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSY 222
+ LQ L L N + + S L L+L+ + ++ L +KL LDLSY
Sbjct: 227 RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSY 283
Query: 223 NDIVEI 228
N +
Sbjct: 284 NRLDRN 289
Score = 55.3 bits (133), Expect = 1e-08
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 6/95 (6%)
Query: 108 TIGPIFQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMN 166
+ L+ L ++ NS A G L LNL+ + +
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA---K 275
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L L L +N+++ PS L + LSL N
Sbjct: 276 LSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPF 308
Score = 49.5 bits (118), Expect = 1e-06
Identities = 36/219 (16%), Positives = 67/219 (30%), Gaps = 15/219 (6%)
Query: 241 TFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVI 300
F C + S+ L +D + ++ + LK+L +
Sbjct: 27 AFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILF 86
Query: 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLT--NLIELDISYNKLDRLEV---ASFDP 355
LQ L L+ + T +L L++ +
Sbjct: 87 GALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW 146
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN-----PHLQ 410
++ L+ L I+ + + L L ++D N +GL P LQ
Sbjct: 147 LKPGLKVLSIAQAHSLNFSC-EQVRVFPALSTLDLSD-NPELGERGLISALCPLKFPTLQ 204
Query: 411 FLNLSGNNLQDI---HNLLYQSNIKLTHLDLSRNKFKGF 446
L L ++ + L + ++L LDLS N +
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte
receptors, VLR, leucine-rich repeat, LRR adaptive
immunity, immune system; HET: DR2; 1.67A {Petromyzon
marinus}
Length = 229
Score = 85.5 bits (212), Expect = 3e-19
Identities = 46/158 (29%), Positives = 69/158 (43%), Gaps = 26/158 (16%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P + + L L N IT L F ++NL+ELYL N++ ++P VF L+ L VL L
Sbjct: 37 GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
N+++ L +F +L LK L + N + E+ P + + L
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTEL-PRGIERLTHLTH---------------- 139
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
L L NQLK + + L L L GN
Sbjct: 140 --------LALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 68.6 bits (168), Expect = 2e-13
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 1/105 (0%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
F + +L+ L L N + +L F + L L L N++ +PS+VF L L+ L +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
N++++L PR +L+ L L L N + I F + L
Sbjct: 120 CCNKLTEL-PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTH 163
Score = 63.9 bits (156), Expect = 8e-12
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
+ L L N + F S L+ L L N+L + F +LT L LD+ N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV 102
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
L A FD + + L++L + N +L+++ +++L L L++ IP G F
Sbjct: 103 LPSAVFDRLVH-LKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLS 159
Query: 408 HLQFLNLSGN 417
L L GN
Sbjct: 160 SLTHAYLFGN 169
Score = 48.9 bits (117), Expect = 1e-06
Identities = 35/117 (29%), Positives = 54/117 (46%), Gaps = 13/117 (11%)
Query: 333 TNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKN-VLDKLVKLKALSIA 391
TN L + N++ +LE FD + N L++L + N QL + V D L +L L +
Sbjct: 40 TNAQILYLHDNQITKLEPGVFDSLIN-LKELYLGSN--QLGALPVGVFDSLTQLTVLDLG 96
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDI----HNLLYQSNIKLTHLDLSRNKFK 444
T +P +F HL+ L + N L ++ L LTHL L +N+ K
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERL-----THLTHLALDQNQLK 148
Score = 44.3 bits (105), Expect = 3e-05
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
I + + L + N I V D L+ LK L + +P G+F L L+L
Sbjct: 38 IPTNAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFK----GFD 447
N L + + ++ + L L + NK G +
Sbjct: 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIE 132
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 84.0 bits (208), Expect = 8e-19
Identities = 46/158 (29%), Positives = 76/158 (48%), Gaps = 25/158 (15%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P YL+L N++ SL + F + +L +LYL NK++S+P+ VF L+ L L+L+
Sbjct: 25 GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
N++ L +F KL++LK L L+ N + + +F + +LK
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD---------------- 128
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGN 295
L L NQLK + + L L+ + L N
Sbjct: 129 --------LRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 72.4 bits (178), Expect = 7e-15
Identities = 34/122 (27%), Positives = 62/122 (50%)
Query: 120 EELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIES 179
L + + + ++ F + SL L L N + SL + F + +L L L N+++S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 180 IPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+P+ VF L+ L+ L+L N++ L +F KL++LK L L N + + +F + L
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 240 KT 241
+
Sbjct: 151 QY 152
Score = 71.2 bits (175), Expect = 2e-14
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 2/130 (1%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
L L+ N L + F LT+L +L + NKL L F+ + + L L +S N +Q
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS-LTYLNLSTNQLQ 89
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431
S V DKL +LK L++ +P G+F L+ L L N L+ + + ++
Sbjct: 90 -SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLT 148
Query: 432 KLTHLDLSRN 441
L ++ L N
Sbjct: 149 SLQYIWLHDN 158
Score = 57.8 bits (140), Expect = 9e-10
Identities = 34/153 (22%), Positives = 59/153 (38%), Gaps = 4/153 (2%)
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
+++ + I L + L+++ ++ L L L LG N+L+
Sbjct: 10 TTVECYSQGRTSVPTGIPAQTTYLDL---ETNSLKSLPNGVFDELTSLTQLYLGGNKLQS 66
Query: 276 LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNL 335
L L L L L N + F +L+ L L N+L + F LT L
Sbjct: 67 LPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQL 126
Query: 336 IELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
+L + N+L + FD + SL+ + + N
Sbjct: 127 KDLRLYQNQLKSVPDGVFDRLT-SLQYIWLHDN 158
Score = 41.2 bits (97), Expect = 3e-04
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
I L + N+++ S V D+L L L + +P G+F L +LNLS
Sbjct: 26 IPAQTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
N LQ + N ++ +L L L+ N+ +
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQ 113
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG;
1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Length = 313
Score = 86.0 bits (214), Expect = 1e-18
Identities = 48/212 (22%), Positives = 78/212 (36%), Gaps = 39/212 (18%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHN 199
L YL +TH N++ + + L L +N + ++P S+ L +L ++ N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFDGN 159
Query: 200 RISKLAPRLFLKLSKL-KSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMY 257
RIS P + SKL S+ +S N + +I P N+N
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-----------------NLN---- 198
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF----PVILEKSFSSQFKLQV 313
L ++DL N L+ + K + + L N L
Sbjct: 199 -----LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-----KVGLSKNLNG 248
Query: 314 LCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
L L+ NR+ T L L L++S+N L
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Score = 69.5 bits (171), Expect = 3e-13
Identities = 54/319 (16%), Positives = 98/319 (30%), Gaps = 102/319 (31%)
Query: 142 SLRYLNLTHNNI--TSLLDYNFKGMMNLQELYL-DFNKIE-SIPSSVFMHLSDLRVLSLA 197
+ L+L+ N+ + + + L LY+ N + IP + L+ L L +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYIT 109
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMM 256
H +S P ++ L +LD SYN + + P I
Sbjct: 110 HTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS---------------------- 147
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLL-LDGNHF----PVILEKSFSSQFKL 311
L +L+ + N++ + D KL T + + N P + L
Sbjct: 148 ---LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF-----ANLNL 199
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
+ L RN L + F + N ++ ++ N L +
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL--------------------AF---- 235
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL-----QDIHNLL 426
D+ K ++ +L L+L N + Q + L
Sbjct: 236 -------------------------DLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQL- 267
Query: 427 YQSNIKLTHLDLSRNKFKG 445
L L++S N G
Sbjct: 268 ----KFLHSLNVSFNNLCG 282
Score = 62.2 bits (152), Expect = 8e-11
Identities = 37/204 (18%), Positives = 74/204 (36%), Gaps = 45/204 (22%)
Query: 105 NHLTIGPI---FQQFQHLEELHI-TNSF---IPA-IGFHPFWGVPSLRYLNLTHNNITSL 156
+++ G I Q + L L N+ +P I +P+L + N I+
Sbjct: 111 TNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-----SLPNLVGITFDGNRISGA 164
Query: 157 LDYNFKGMMNL-QELYLDFNKIE-SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
+ ++ L + + N++ IP + +L+ L + L+ N + A LF
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRNMLEGDASVLFGSDKN 222
Query: 215 LKSLDLSYNDIV-EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273
+ + L+ N + ++ ++ +L LDL N++
Sbjct: 223 TQKIHLAKNSLAFDL-GKVGL-------------------------SKNLNGLDLRNNRI 256
Query: 274 KYLLADELEDLKKLETLLLDGNHF 297
L L LK L +L + N+
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSFNNL 280
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 85.2 bits (210), Expect = 3e-18
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 134 FHPFWGVPSLRYLNLTHNN-ITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLR 192
H G +L L + + + L + +G+ L+ L + + + + F L
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS 83
Query: 193 VLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
L+L+ N + L+ + LS L+ L LS N
Sbjct: 84 RLNLSFNALESLSWKTVQGLS-LQELVLSGN 113
Score = 81.7 bits (201), Expect = 4e-17
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Query: 149 THNNITSLLDYNFKGMMNLQELYLDFNK-IESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
T + L + G NL ELY++ + ++ + L +LR L++ + + +AP
Sbjct: 16 TRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 208 LFLKLSKLKSLDLSYNDIVEINPEIFK 234
F +L L+LS+N + ++ + +
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQ 101
Score = 72.8 bits (178), Expect = 3e-14
Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 2/100 (2%)
Query: 103 NPNHLTIGPIFQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNF 161
L ++L EL+I + + G+ LR L + + + + F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L L L FN +ES+ LS L+ L L+ N +
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115
Score = 63.2 bits (153), Expect = 5e-11
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Query: 281 LEDLKKLETLLLDGN-HFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELD 339
L + L L ++ H + + +L+ L + ++ L V AF L L+
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 340 ISYNKLDRLEVASFDPIENSLRDLKISGNNIQLS 373
+S+N L+ L + + SL++L +SGN + S
Sbjct: 87 LSFNALESLSWKTVQGL--SLQELVLSGNPLHCS 118
Score = 60.9 bits (147), Expect = 2e-10
Identities = 29/133 (21%), Positives = 42/133 (31%), Gaps = 30/133 (22%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNK-LDRLEVASFDPIENSLRDLKISGNNI 370
+ C + L + NL EL I + L LE+ + LR+L I + +
Sbjct: 12 GLRCTRDGALDSLH--HLPGAENLTELYIENQQHLQHLELRDLRGLGE-LRNLTIVKSGL 68
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
+ F P L LNLS N L+ + Q
Sbjct: 69 -------------------------RFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ-G 102
Query: 431 IKLTHLDLSRNKF 443
+ L L LS N
Sbjct: 103 LSLQELVLSGNPL 115
Score = 60.5 bits (146), Expect = 3e-10
Identities = 21/120 (17%), Positives = 41/120 (34%), Gaps = 27/120 (22%)
Query: 179 SIPSSVFMHLSDLRVLSLAHNR-ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQ 237
+L L + + + + L R L +L++L + + + + P+ F
Sbjct: 22 DSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHF-- 78
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L L+L +N L+ L ++ L L+ L+L GN
Sbjct: 79 ----------------------TPRLSRLNLSFNALESLSWKTVQGL-SLQELVLSGNPL 115
Score = 56.7 bits (136), Expect = 5e-09
Identities = 18/117 (15%), Positives = 32/117 (27%), Gaps = 26/117 (22%)
Query: 206 PRLFLKLSKLKSLDLSYN-DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLI 264
L L + + + + + EL+
Sbjct: 24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRN----------------------- 60
Query: 265 YLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
L + + L+++ D +L L L N + K+ LQ L L N L
Sbjct: 61 -LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQG-LSLQELVLSGNPL 115
Score = 48.6 bits (115), Expect = 3e-06
Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 379 LDKLVKLKALSIADMNY-TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLD 437
L L L I + + + + L+ L + + L+ + + +L+ L+
Sbjct: 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86
Query: 438 LSRNKFK 444
LS N +
Sbjct: 87 LSFNALE 93
Score = 29.3 bits (65), Expect = 3.0
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKD 31
+ +L++L + + + + P+ F
Sbjct: 55 LGELRNLTIVKSGLRFVAPDAFHF 78
Score = 28.9 bits (64), Expect = 3.7
Identities = 12/102 (11%), Positives = 30/102 (29%), Gaps = 11/102 (10%)
Query: 4 TLIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF---------QVTIFLYLLHSSASV 54
F +L L+LS+N + ++ + + + ++ +
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134
Query: 55 MC--PYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEV 94
+ C C + +P +D+G +V
Sbjct: 135 VPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDV 176
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat
protein, structural genomi center for structural
genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Length = 197
Score = 81.5 bits (202), Expect = 4e-18
Identities = 23/209 (11%), Positives = 63/209 (30%), Gaps = 31/209 (14%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+ + +S + M +L + L + + + +++ L++ +
Sbjct: 20 STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSIL 260
+ P LS L+ L + D+ L
Sbjct: 78 ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG------------------------L 111
Query: 261 ADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
L LD+ ++ + ++ L K+ ++ L N + + +L+ L ++ +
Sbjct: 112 TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG 170
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+ + L +L + +
Sbjct: 171 VHDY--RGIEDFPKLNQLYAFSQTIGGKK 197
Score = 81.2 bits (201), Expect = 5e-18
Identities = 34/194 (17%), Positives = 68/194 (35%), Gaps = 10/194 (5%)
Query: 229 NPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLE 288
+ D K + G + + + + L Y+ L + L +E ++
Sbjct: 13 DNVNIPD-STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDL--TGIEYAHNIK 69
Query: 289 TLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRL 348
L ++ H S L+ L + + + LT+L LDIS++ D
Sbjct: 70 DLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS 127
Query: 349 EVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408
+ + + + + +S N ++D+ L L +LK+L+I D + P
Sbjct: 128 ILTKINTLPK-VNSIDLSYNG-AITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFPK 182
Query: 409 LQFLNLSGNNLQDI 422
L L +
Sbjct: 183 LNQLYAFSQTIGGK 196
Score = 78.8 bits (195), Expect = 3e-17
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 31/182 (17%)
Query: 115 QFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDF 174
Q L + + N + + +++ L + + + T+ G+ NL+ L +
Sbjct: 42 QMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMG 97
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
+ S L+ L +L ++H+ L K+ S+DLSYN +
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI-------T 150
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
DI LKT L +L L++ ++ + +ED KL L
Sbjct: 151 DIMPLKT------------------LPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFS 190
Query: 295 NH 296
Sbjct: 191 QT 192
Score = 75.8 bits (187), Expect = 4e-16
Identities = 27/189 (14%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 212 LSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
+ L + I + L + + ++ + Y ++ L +
Sbjct: 22 FKAYLNGLLGQSSTANITEA---QMNSLTYITLANINVTDLTGIEY--AHNIKDLTINNI 76
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTN 331
+ + L LE L + G + S L +L + + T
Sbjct: 77 HATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134
Query: 332 LTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALS 389
L + +D+SYN + P++ L+ L I + + D + ++ KL L
Sbjct: 135 LPKVNSIDLSYNGA----ITDIMPLKTLPELKSLNIQFDGV--HDYRG-IEDFPKLNQLY 187
Query: 390 IADMNYTDI 398
Sbjct: 188 AFSQTIGGK 196
Score = 65.4 bits (160), Expect = 2e-12
Identities = 31/162 (19%), Positives = 57/162 (35%), Gaps = 16/162 (9%)
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
K LL + + + L + L + +T N+ +L I+
Sbjct: 22 FKAYLNGLLGQSS---TANITEAQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNI 76
Query: 344 KLDRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKG 401
PI +L L+I G ++ + N L L L L I+ + D
Sbjct: 77 HATNYN-----PISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAHDDSILT 130
Query: 402 LFKMNPHLQFLNLSGNN-LQDIHNLLYQSNIKLTHLDLSRNK 442
P + ++LS N + DI L ++ +L L++ +
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDG 170
Score = 38.4 bits (90), Expect = 0.002
Identities = 9/64 (14%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSR 440
++ L +++A++N TD+ G+ +++ L ++ + + + + L L +
Sbjct: 42 QMNSLTYITLANINVTDL-TGIEYA-HNIKDLTINNIHATNYNPI--SGLSNLERLRIMG 97
Query: 441 NKFK 444
Sbjct: 98 KDVT 101
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance,
leucine-rich repeat glycoprotein, EGF-like domain,
signal protein; 2.8A {Drosophila melanogaster} SCOP:
c.10.2.7
Length = 192
Score = 76.6 bits (189), Expect = 2e-16
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 2/105 (1%)
Query: 139 GVP-SLRYLNLTHNNITSL-LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
+P L L N + + D F + +L +L L N++ I + F S ++ L L
Sbjct: 26 DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
N+I +++ ++FL L +LK+L+L N I + P F+ + L +
Sbjct: 86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTS 130
Score = 71.6 bits (176), Expect = 9e-15
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL 188
I + G F +P L L L N +T + F+G ++QEL L NKI+ I + +F+ L
Sbjct: 44 ISSDGL--FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
L+ L+L N+IS + P F L+ L SL+L+ N
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 53.9 bits (130), Expect = 1e-08
Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 27/131 (20%)
Query: 312 QVLCLKRNRLAKVTTTA-FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L L N L ++++ F L +L++L++ N+L +E +F+
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE---------------- 75
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
++ L + + +I +F L+ LNL N + + ++
Sbjct: 76 ----------GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 431 IKLTHLDLSRN 441
LT L+L+ N
Sbjct: 126 NSLTSLNLASN 136
Score = 53.1 bits (128), Expect = 3e-08
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 5/130 (3%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED-LKKLETLLLDGNHFP 298
T C GL+ I I L L N+L + +D L L L L L N
Sbjct: 11 TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN 358
I +F +Q L L N++ +++ F L L L++ N++ + SF+ +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN- 126
Query: 359 SLRDLKISGN 368
SL L ++ N
Sbjct: 127 SLTSLNLASN 136
Score = 52.3 bits (126), Expect = 4e-08
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 25/132 (18%)
Query: 216 KSLDLSYNDIVEINPE-IFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
L L+ N++ I+ + +F L L+ L+L NQL
Sbjct: 32 TELLLNDNELGRISSDGLFGR------------------------LPHLVKLELKRNQLT 67
Query: 275 YLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTN 334
+ + E ++ L L N I K F +L+ L L N+++ V +F +L +
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 335 LIELDISYNKLD 346
L L+++ N +
Sbjct: 128 LTSLNLASNPFN 139
Score = 49.2 bits (118), Expect = 4e-07
Identities = 19/84 (22%), Positives = 36/84 (42%)
Query: 361 RDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ 420
+L ++ N + + +L L L + T I F+ H+Q L L N ++
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 421 DIHNLLYQSNIKLTHLDLSRNKFK 444
+I N ++ +L L+L N+
Sbjct: 92 EISNKMFLGLHQLKTLNLYDNQIS 115
Score = 31.5 bits (72), Expect = 0.39
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELY 171
F+ H++EL + + I I F G+ L+ LNL N I+ ++ +F+ + +L L
Sbjct: 73 AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132
Query: 172 LDFN 175
L N
Sbjct: 133 LASN 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder,
flagella, contractIle protein; NMR {Chlamydomonas
reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Length = 198
Score = 74.3 bits (183), Expect = 1e-15
Identities = 42/151 (27%), Positives = 60/151 (39%), Gaps = 31/151 (20%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
L+ I + D + + L L N IE I S + +LR+LSL N I K+
Sbjct: 30 LHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
L L+ L +SYN I ++ G+E L +L
Sbjct: 87 N-LDAVADTLEELWISYNQIASLS------------------GIEK--------LVNLRV 119
Query: 266 LDLGYNQLKYLLA-DELEDLKKLETLLLDGN 295
L + N++ D+L L KLE LLL GN
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGN 150
Score = 59.7 bits (145), Expect = 1e-10
Identities = 33/157 (21%), Positives = 73/157 (46%), Gaps = 11/157 (7%)
Query: 271 NQLKYLLADELEDLKKLETLLLDGNHFPVI--LEKSFSSQFKLQVLCLKRNRLAKVTTTA 328
+ ++ + + E + L P I ++ + S+ + L L N + K++ +
Sbjct: 9 DAIRIFEERKSVVATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--S 65
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
+ + NL L + N + ++E + D + ++L +L IS N I + + ++KLV L+ L
Sbjct: 66 LSGMENLRILSLGRNLIKKIE--NLDAVADTLEELWISYNQI--ASLSG-IEKLVNLRVL 120
Query: 389 SIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDIHN 424
+++ T+ + L+ L L+GN L + +
Sbjct: 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157
Score = 58.2 bits (141), Expect = 5e-10
Identities = 25/129 (19%), Positives = 54/129 (41%), Gaps = 9/129 (6%)
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVL 379
+ + T +EL +++++ A+ ++ + L +S NNI + + L
Sbjct: 13 IFEERKSVVATEAEK-VELHGMIPPIEKMD-ATLSTLKA-CKHLALSTNNI--EKISS-L 66
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
+ L+ LS+ I + L + L+ L +S N + + + + + L L +S
Sbjct: 67 SGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSGI--EKLVNLRVLYMS 123
Query: 440 RNKFKGFDE 448
NK + E
Sbjct: 124 NNKITNWGE 132
Score = 58.2 bits (141), Expect = 5e-10
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 10/126 (7%)
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL--LDYNFKGMMN 166
+ + + L ++ + I I G+ +LR L+L N I + LD
Sbjct: 40 MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVAD---T 94
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK-LSKLKSLDLSYNDI 225
L+EL++ +N+I S+ S L +LRVL +++N+I+ L L KL+ L L+ N +
Sbjct: 95 LEELWISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152
Query: 226 VEINPE 231
E
Sbjct: 153 YNDYKE 158
Score = 50.5 bits (121), Expect = 2e-07
Identities = 34/196 (17%), Positives = 69/196 (35%), Gaps = 36/196 (18%)
Query: 199 NRISKLAPRLFLKLSKLKSLDL--SYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM 256
+ I R + ++ + ++L I +++ +
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATL------------------------ 44
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
S L +L L N ++ + L ++ L L L N I E + L+ L +
Sbjct: 45 -STLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWI 100
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSD 374
N++A + + L NL L +S NK+ D + L DL ++GN +
Sbjct: 101 SYNQIASL--SGIEKLVNLRVLYMSNNKITNWG--EIDKLAALDKLEDLLLAGNPLYNDY 156
Query: 375 VKNVLDKLVKLKALSI 390
+N +++ +
Sbjct: 157 KENNATSEYRIEVVKR 172
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 76.3 bits (188), Expect = 3e-15
Identities = 49/352 (13%), Positives = 104/352 (29%), Gaps = 70/352 (19%)
Query: 141 PSLRYLNLTHNNIT-----SLLDYNFKGMMNLQELYLDFNKI-----ESIPSSVFMHLSD 190
+ L+L+ NN+ L+ ++ L L N + + + + ++
Sbjct: 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81
Query: 191 LRVLSLAHNRIS-----KLAPRLFLKLSKLKSLDLSYNDI-----VEINPEIFKDIQELK 240
+ L+L+ N +S +L L + LDL +ND E +
Sbjct: 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASIT 141
Query: 241 TFKCRSC-----GLENINPMMYSILADLIYLDLGYNQLK----YLLADELEDL-KKLETL 290
+ R + + ++ +I A++ L+L N L LA L + + +L
Sbjct: 142 SLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSL 201
Query: 291 LLDGNHF-----PVILEKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDIS 341
L N + S + L L N L + +L +L + +
Sbjct: 202 DLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261
Query: 342 YNKLDRL------EVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNY 395
Y+ + + + + P + + +G I S
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIP------------------ 303
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNL-----LYQSNIKLTHLDLSRNK 442
I + +++ +L L +L +
Sbjct: 304 --ISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKP 353
Score = 64.3 bits (157), Expect = 2e-11
Identities = 51/317 (16%), Positives = 94/317 (29%), Gaps = 74/317 (23%)
Query: 142 SLRYLNLTHNNIT---------SLLDYNFKGMMNLQELYLDFNKI-----ESIPSSVFMH 187
++ LNL+ N ++ +L F + L L +N +
Sbjct: 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFT----ITVLDLGWNDFSSKSSSEFKQAFSNL 136
Query: 188 LSDLRVLSLAHNRISK-----LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
+ + L+L N + L L + + SL+L N++
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL----------------- 179
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKY----LLADELEDLK-KLETLLLDGNHF 297
S + + SI A + LDL N L LA + + +L L N
Sbjct: 180 --ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237
Query: 298 P----VILEKSFSSQFKLQVLCLKRNRL-------AKVTTTAFTNLTNLIELDISYNKLD 346
L+ S LQ + L + + K AF N+ +I +D + ++
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297
Query: 347 RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN 406
I N +R+L + L + + +
Sbjct: 298 PSHSIP---ISNLIRELSGKADVPSLLN-------------QCLIFAQKHQTNIEDLNIP 341
Query: 407 PHLQFLNLSGNNLQDIH 423
L+ + L + H
Sbjct: 342 DELRESIQTCKPLLEHH 358
Score = 61.3 bits (149), Expect = 2e-10
Identities = 51/292 (17%), Positives = 88/292 (30%), Gaps = 69/292 (23%)
Query: 182 SSVFMHLSDLRVLSLAHNRIS-----KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDI 236
+ L L+ N + +L + + SL+LS N +
Sbjct: 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL----------- 63
Query: 237 QELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY----LLADELEDLK-KLETLL 291
+ + ++ +I A++ L+L N L Y L L + + L
Sbjct: 64 --------GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLD 115
Query: 292 LDGNHFPVILEKSFSSQFK-----LQVLCLKRNRLAKVTTTAFTNL-----TNLIELDIS 341
L N F F F + L L+ N L ++ + N+ L++
Sbjct: 116 LGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR 175
Query: 342 YNKLDR---LEVASFDPIEN-SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD 397
N L E+A F S+ L +S N + L +
Sbjct: 176 GNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA--------------------E 215
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKFK 444
+ + H+ LNL N L + L S L + L + K
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLK-DSLKHLQTVYLDYDIVK 266
Score = 51.6 bits (124), Expect = 3e-07
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 18/148 (12%)
Query: 314 LCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS----FDPIENSLRDLKISGNN 369
L + + + + LD+S N L + F S+ L +SGN+
Sbjct: 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS 62
Query: 370 IQLSDVKNVLDKL----VKLKALSIADMNYTD-----IPKGLFKMNPHLQFLNLSGNNLQ 420
+ + ++ L + +L+++ + + K L + + L+L N+
Sbjct: 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122
Query: 421 D-----IHNLLYQSNIKLTHLDLSRNKF 443
+T L+L N
Sbjct: 123 SKSSSEFKQAFSNLPASITSLNLRGNDL 150
>2wfh_A SLIT homolog 2 protein C-product; developmental protein,
neurogenesis, splicing, glycoprotein, leucine-rich
repeat, disulfide bond, differentiation; 1.80A {Homo
sapiens}
Length = 193
Score = 71.2 bits (175), Expect = 2e-14
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P + L L N T + +L + L N+I ++ + F +++ L L L+
Sbjct: 28 GIPRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS 86
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
+NR+ + PR F L L+ L L NDI + F D+ L
Sbjct: 87 YNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130
Score = 69.2 bits (170), Expect = 7e-14
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
L ++L++N I++L + +F M L L L +N++ IP F L LR+LSL
Sbjct: 50 LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYN 223
N IS + F LS L L + N
Sbjct: 110 HGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 55.4 bits (134), Expect = 4e-09
Identities = 33/100 (33%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
L LDGN F ++ K S+ L ++ L NR++ ++ +F+N+T L+ L +SYN+L
Sbjct: 34 TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDV-KNVLDKLVKLK 386
+ +FD + SLR L + GN +S V + + L L
Sbjct: 93 IPPRTFDGL-KSLRLLSLHGN--DISVVPEGAFNDLSALS 129
Score = 55.0 bits (133), Expect = 6e-09
Identities = 27/93 (29%), Positives = 42/93 (45%)
Query: 254 PMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQV 313
P S L +DL N++ L ++ +L TL+L N I ++F L++
Sbjct: 47 PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRL 106
Query: 314 LCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
L L N ++ V AF +L+ L L I N L
Sbjct: 107 LSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 53.8 bits (130), Expect = 1e-08
Identities = 26/130 (20%), Positives = 45/130 (34%), Gaps = 27/130 (20%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
L L N+ V +N +L +D+S N++ L SF
Sbjct: 34 TELYLDGNQFTLVPK-ELSNYKHLTLIDLSNNRISTLSNQSFS----------------- 75
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431
+ +L L ++ IP F L+ L+L GN++ + +
Sbjct: 76 ---------NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS 126
Query: 432 KLTHLDLSRN 441
L+HL + N
Sbjct: 127 ALSHLAIGAN 136
Score = 53.1 bits (128), Expect = 2e-08
Identities = 32/110 (29%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
I D+ L L NQ L+ EL + K L + L N + +SFS+ +L L L
Sbjct: 29 IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
NRL + F L +L L + N + + +F+ + +L L I N
Sbjct: 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLS-ALSHLAIGAN 136
Score = 45.4 bits (108), Expect = 9e-06
Identities = 16/74 (21%), Positives = 25/74 (33%)
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
Q + V L L + +++ + + F L L LS N L+ I +
Sbjct: 42 QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101
Query: 431 IKLTHLDLSRNKFK 444
L L L N
Sbjct: 102 KSLRLLSLHGNDIS 115
Score = 34.6 bits (80), Expect = 0.041
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
D N + HL ++LS N + + N + + +L L LS N+ +
Sbjct: 39 DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Score = 28.4 bits (64), Expect = 3.6
Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 105 NHLTIGP--IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
N ++ F L L ++ + + I F G+ SLR L+L N+I+ + + F
Sbjct: 64 NRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN 123
Query: 163 GMMNLQELYLDFN 175
+ L L + N
Sbjct: 124 DLSALSHLAIGAN 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 2.30A {Eptatretus burgeri}
Length = 177
Score = 70.4 bits (173), Expect = 2e-14
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P S L L N + SL F + L +L L N+I+S+P VF L+ L +L L
Sbjct: 25 GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
N++ L +F KL++LK L L N + + IF + L+
Sbjct: 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQK 128
Score = 58.4 bits (142), Expect = 3e-10
Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 26/130 (20%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
L L+ N+L + F LT L +L +S N++ L FD
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFD----------------- 73
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI 431
KL KL L + + +P G+F L+ L L N L+ + + ++
Sbjct: 74 ---------KLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 432 KLTHLDLSRN 441
L + L N
Sbjct: 125 SLQKIWLHTN 134
Score = 56.5 bits (137), Expect = 1e-09
Identities = 30/87 (34%), Positives = 49/87 (56%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
F + L L+L+ N I SL D F + L LYL NK++S+P+ VF L+ L+ L+L
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYN 223
N++ + +F +L+ L+ + L N
Sbjct: 108 DTNQLKSVPDGIFDRLTSLQKIWLHTN 134
Score = 44.2 bits (105), Expect = 2e-05
Identities = 31/130 (23%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
L L+ N + F +L L L +N++ + F LT L L + NKL
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
L F DKL +LK L++ +P G+F
Sbjct: 91 LPNGVF--------------------------DKLTQLKELALDTNQLKSVPDGIFDRLT 124
Query: 408 HLQFLNLSGN 417
LQ + L N
Sbjct: 125 SLQKIWLHTN 134
Score = 34.9 bits (81), Expect = 0.024
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
+P G+F L L+LS N +Q + + ++ KLT L L NK +
Sbjct: 41 QSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP,
ribonucleoprotein, RNA binding protein/RNA complex;
2.38A {Homo sapiens} SCOP: c.10.2.4
Length = 176
Score = 69.3 bits (170), Expect = 5e-14
Identities = 35/151 (23%), Positives = 52/151 (34%), Gaps = 30/151 (19%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ LT I + + +EL L KI I ++ L + + N I KL
Sbjct: 2 VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
F L +LK+L ++ N I I + + + +L
Sbjct: 59 G--FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT------------------------E 92
Query: 266 LDLGYNQLKYLLA-DELEDLKKLETLLLDGN 295
L L N L L D L LK L L + N
Sbjct: 93 LILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 68.1 bits (167), Expect = 1e-13
Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 4/128 (3%)
Query: 103 NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFK 162
+ + EL + IP I + ++ + N I L F
Sbjct: 5 TAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGAT-LDQFDAIDFSDNEIRKLD--GFP 61
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLK-LSKLKSLDLS 221
+ L+ L ++ N+I I + L DL L L +N + +L L L L L +
Sbjct: 62 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121
Query: 222 YNDIVEIN 229
N +
Sbjct: 122 RNPVTNKK 129
Score = 62.0 bits (151), Expect = 2e-11
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
+TN ELD+ K+ +E + + + S N I + L +LK L
Sbjct: 15 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEI--RKLDG-FPLLRRLKTL 69
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRN 441
+ + I +GL + P L L L+ N+L ++ +L S LT+L + RN
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
Score = 55.4 bits (134), Expect = 3e-09
Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 11/152 (7%)
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325
+ L ++ A + + + L L G PVI E ++ + + N + K+
Sbjct: 2 VKLTAELIE--QAAQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLD 58
Query: 326 TTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ-LSDVKNVLDKLVK 384
F L L L ++ N++ R+ + + L +L ++ N++ L D+ L L
Sbjct: 59 G--FPLLRRLKTLLVNNNRICRIGEGLDQALPD-LTELILTNNSLVELGDLDP-LASLKS 114
Query: 385 LKALSIADMNYTDIP---KGLFKMNPHLQFLN 413
L L I T+ + P ++ L+
Sbjct: 115 LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146
Score = 48.9 bits (117), Expect = 5e-07
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 7/114 (6%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
LDL ++ + + L + + + N + F +L+ L + N
Sbjct: 18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNN 74
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQ 371
R+ ++ L +L EL ++ N L L DP+ + SL L I N +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELG--DLDPLASLKSLTYLCILRNPVT 126
Score = 47.3 bits (113), Expect = 2e-06
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK-GLFKMNPHLQFLNLSGN 417
R+L + G I ++N+ L + A+ D + +I K F + L+ L ++ N
Sbjct: 20 RDRELDLRGYKI--PVIENLGATLDQFDAI---DFSDNEIRKLDGFPLLRRLKTLLVNNN 74
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+ I L Q+ LT L L+ N +
Sbjct: 75 RICRIGEGLDQALPDLTELILTNNSLVELGD 105
Score = 34.6 bits (80), Expect = 0.035
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 110 GPIFQQFQHLEELHITNSFIPAIG-FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQ 168
+ Q L EL +TN+ + +G P + SL YL + N +T+ Y + +
Sbjct: 81 EGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVP 140
Query: 169 EL-YLDFNKIE 178
++ LDF K++
Sbjct: 141 QVRVLDFQKVK 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 72.1 bits (176), Expect = 1e-13
Identities = 30/166 (18%), Positives = 60/166 (36%), Gaps = 15/166 (9%)
Query: 84 PIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGV--- 140
P + L T +L + + F + ++ + F V
Sbjct: 379 PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM 438
Query: 141 --PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAH 198
+R L+L H ++T L + + ++ + L L N++ ++P + L L VL +
Sbjct: 439 EYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASD 495
Query: 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
N + + L +L+ L L N + + IQ L +
Sbjct: 496 NALENVDG--VANLPRLQELLLCNNRLQQ-----SAAIQPLVSCPR 534
Score = 64.8 bits (157), Expect = 2e-11
Identities = 47/279 (16%), Positives = 85/279 (30%), Gaps = 37/279 (13%)
Query: 164 MMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
+ +L L+ + ++ + L +R R +L +LS
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSATDEQLFRCELSVE 359
Query: 224 DIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELED 283
+ E+ + +EL+ + + ++ L L+Y L + D
Sbjct: 360 KSTVLQSEL-ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTL---KAVD 415
Query: 284 LKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
+ L + F + ++VL L L + L + LD+S+N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC--HLEQLLLVTHLDLSHN 473
Query: 344 KLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
+L L L L L+ L +D ++
Sbjct: 474 RLRALP---------------------------PALAALRCLEVLQASDNALENVDG--V 504
Query: 404 KMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRN 441
P LQ L L N LQ + S +L L+L N
Sbjct: 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543
Score = 62.5 bits (151), Expect = 1e-10
Identities = 46/308 (14%), Positives = 86/308 (27%), Gaps = 44/308 (14%)
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
P L + + + G S + L + + L
Sbjct: 296 PSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCR-DSATDEQLFRC 354
Query: 171 YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINP 230
L K + S + +L+ L + + L + L L + +
Sbjct: 355 ELSVEKSTVLQSELE-SCKELQELEPENKWCLL---TIILLMRALDPLLYEKETLQYFST 410
Query: 231 EIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETL 290
D N ++ AD+ L L + L L LE L + L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHL 468
Query: 291 LLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
L N + A L L L S N L+ ++
Sbjct: 469 DLSHNRLRAL-------------------------PPALAALRCLEVLQASDNALENVD- 502
Query: 351 ASFDPIEN--SLRDLKISGNNI-QLSDVKNVLDKLVKLKALSIADMNYTDIP---KGLFK 404
+ N L++L + N + Q + ++ L +L L++ + + L +
Sbjct: 503 ----GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGIQERLAE 557
Query: 405 MNPHLQFL 412
M P + +
Sbjct: 558 MLPSVSSI 565
Score = 60.5 bits (146), Expect = 7e-10
Identities = 43/267 (16%), Positives = 96/267 (35%), Gaps = 23/267 (8%)
Query: 199 NRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY- 257
+ P + S + DL + + P+ + + + C L P +
Sbjct: 283 LSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWC 342
Query: 258 ---SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVL 314
+ L +L + L + ELE K+L+ L + + + L L
Sbjct: 343 RDSATDEQLFRCELSVEKSTVLQS-ELESCKELQELEPENKWCLLTIILLMR---ALDPL 398
Query: 315 CLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE----NSLRDLKISGNNI 370
++ L F+ L + + +Y R + + + +R L ++
Sbjct: 399 LYEKETLQY-----FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK-- 451
Query: 371 QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSN 430
L+ + + L++L+ + L ++ +P L L+ L S N L+++ + +
Sbjct: 452 DLTVLCH-LEQLLLVTHLDLSHNRLRALPPAL-AALRCLEVLQASDNALENVDGV--ANL 507
Query: 431 IKLTHLDLSRNKFKGFDEKSYIMSEPK 457
+L L L N+ + ++S P+
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPR 534
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 69.4 bits (170), Expect = 5e-13
Identities = 52/337 (15%), Positives = 93/337 (27%), Gaps = 90/337 (26%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
S+ +L + IT+ + ++ +V + ++ + L+ N I
Sbjct: 5 SIEGKSLKLDAITT------EDEKSV--------------FAVLLEDDSVKEIVLSGNTI 44
Query: 202 S----KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
+ L+ + S + EI + ++ L L
Sbjct: 45 GTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL------LQALLK------ 92
Query: 258 SILADLIYLDLGYNQLKY----LLADELEDLKKLETLLLDGNHF-------------PVI 300
L + L N L D L LE L L N +
Sbjct: 93 --CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELA 150
Query: 301 LEKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLDR--LEVASFD 354
+ K + L+ + RNRL K F + L + + N + +E +
Sbjct: 151 VNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLE 210
Query: 355 PIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFL 412
+ L+ L + N ++A K P+L+ L
Sbjct: 211 GLAYCQELKVLDLQDNTFTHLGSS------------ALAIA---------LKSWPNLREL 249
Query: 413 NLSGNNLQDI------HNLLYQSNIKLTHLDLSRNKF 443
L+ L NI L L L N+
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286
Score = 69.0 bits (169), Expect = 7e-13
Identities = 52/318 (16%), Positives = 96/318 (30%), Gaps = 69/318 (21%)
Query: 141 PSLRYLNLTHNNIT----SLLDYNFKGMMNLQELYLDFNKIESIP----------SSVFM 186
S++ + L+ N I L N +L+ + +
Sbjct: 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91
Query: 187 HLSDLRVLSLAHNRISKLAPRLFLKL----SKLKSLDLSYNDIVEINPEIFKDIQE-LKT 241
L + L+ N A + + L+ L L N + P+ I L+
Sbjct: 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG---LGPQAGAKIARALQE 148
Query: 242 FKCRSCGLENINPMMYSILADLIYLDLGYNQLK----YLLADELEDLKKLETLLLDGNHF 297
L + G N+L+ A + + L T+ + N
Sbjct: 149 LAVNKKAKNAPP---------LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGI 199
Query: 298 -----PVILEKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLD-- 346
+L + + +L+VL L+ N + A + NL EL ++ L
Sbjct: 200 RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259
Query: 347 ---RLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLF 403
+ A L+ L++ N I+L V+ + +
Sbjct: 260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVR--------------------TLKTVID 299
Query: 404 KMNPHLQFLNLSGNNLQD 421
+ P L FL L+GN +
Sbjct: 300 EKMPDLLFLELNGNRFSE 317
Score = 46.6 bits (111), Expect = 1e-05
Identities = 29/140 (20%), Positives = 47/140 (33%), Gaps = 26/140 (18%)
Query: 109 IGPIFQQFQHLEELHITNSFIPAIGFHPFWGV-----PSLRYLNLTHNNIT----SLLDY 159
FQ + L + + + I G L+ L+L N T S L
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238
Query: 160 NFKGMMNLQELYLDFNKI---------ESIPSSVFMHLSDLRVLSLAHNRISK-----LA 205
K NL+EL L+ + ++ + L + L L +N I L
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL---QTLRLQYNEIELDAVRTLK 295
Query: 206 PRLFLKLSKLKSLDLSYNDI 225
+ K+ L L+L+ N
Sbjct: 296 TVIDEKMPDLLFLELNGNRF 315
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 1e-12
Identities = 78/556 (14%), Positives = 160/556 (28%), Gaps = 164/556 (29%)
Query: 1 MEFTLIFMSKLKSLDLSYNDIVEINPEIF------KDIQDTTM----------LFQVT-- 42
M+F + Y DI+ + + F KD+QD +
Sbjct: 7 MDF------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA 60
Query: 43 ------IFLYLLHSSASVMCPYMCECALDDRG----RYEIVCRRGDMANPIPIGQMDLGT 92
+F LL ++ ++ E + + R+ M + I Q D
Sbjct: 61 VSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD--- 117
Query: 93 EVLKIVPSEENPNHLTIGPIFQQFQ-HLEEL--------H---------------ITNSF 128
L +++ + + + L EL ++
Sbjct: 118 -RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL----DFNKIESIPSSV 184
+ F FW LNL + N + + LQ+L ++ S++
Sbjct: 177 QCKMDFKIFW-------LNLKNCNSPETV------LEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF-- 242
+ + ++ + RL L L ++ ++ + F
Sbjct: 224 KLRIHSIQ------AELR----RLLKSKPYENCL-LVLLNV--------QNAKAWNAFNL 264
Query: 243 KCR-------SCGLENINPMMYSILADLIYLDLGYN--QLKYLLADELE-DLKKLETLLL 292
C+ + ++ + ++ L + + ++K LL L+ + L +L
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 293 DGNHFPVILEKSFSSQF--KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
N P L S ++ + V T + ++ S N L+ E
Sbjct: 324 TTN--PRRL-----SIIAESIRDGLATWDNWKHVNCDKLTTI-----IESSLNVLEPAEY 371
Query: 351 -------ASFDPIENSLRDLKISGNNIQL-------SDVKNVLDKLVKLKALSIADMNYT 396
+ F P I + L SDV V++KL K S+ +
Sbjct: 372 RKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSDVMVVVNKLHK---YSLVEKQPK 422
Query: 397 DIPKGLFKMNPHLQF-LNLSGNNLQDIHNLL---YQSNIKLTHLDLSRNKFKG--FDEKS 450
+ + P + L + N +H + Y DL + S
Sbjct: 423 ESTISI----PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY---S 475
Query: 451 YI---MSEPKNIHKAA 463
+I + ++ +
Sbjct: 476 HIGHHLKNIEHPERMT 491
Score = 47.5 bits (112), Expect = 8e-06
Identities = 66/418 (15%), Positives = 129/418 (30%), Gaps = 113/418 (27%)
Query: 74 CRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTI------GPIFQQF----QHL---E 120
R D ++ I + + E+ +++ S+ N L + + F + L
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 121 ELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESI 180
+T+ A H S + LT + + SLL YLD + + +
Sbjct: 274 FKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLL-----------LKYLD-CRPQDL 318
Query: 181 PSSVFMHLSDLRVLSL---------------AHNRISKLAPRLFLKLSKLKSLDLS--YN 223
P + ++ R LS+ H KL + L+ L+ + ++
Sbjct: 319 PRE--VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 224 DI------VEINPE----------IFKDIQE-LKTFKCRSCGLENINPMMYSILADLIYL 266
+ I P I D+ + S + SI + IYL
Sbjct: 377 RLSVFPPSAHI-PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS--IYL 433
Query: 267 DLGYNQLKYLLADELEDLKKLETLLL---------DGNHFPVILEKSFSSQFKLQVLCLK 317
+ L +LE+ L ++ D + + +
Sbjct: 434 E---------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH------IG 478
Query: 318 RNRLAKVTTTAFTNLTNLIELDISY--NKL--DRLEVASFDPIENSLRDLKISGNNIQLS 373
+ L + L ++ LD + K+ D + I N+L+ LK I +
Sbjct: 479 HH-LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 374 DVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHL---QFLNLSGNNLQDIHNLLYQ 428
D ++LV I L K+ +L ++ +L L +++
Sbjct: 538 D--PKYERLVN------------AILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE 581
Score = 32.5 bits (73), Expect = 0.43
Identities = 22/173 (12%), Positives = 48/173 (27%), Gaps = 42/173 (24%)
Query: 265 YLDLGYNQLKY----LLADELEDLKKLETLLLDGNHFPVILEKSFSSQ------------ 308
++D + +Y +L+ + D + + S +
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 309 ----FKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL-DRLEVASFDPIENSLRDL 363
L K+ + + F L I+Y L ++ P +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQ----KFVEEV----LRINYKFLMSPIKTEQRQPSMM--TRM 111
Query: 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG 416
I Q + N K +S Y + + L ++ P + + + G
Sbjct: 112 YIE----QRDRLYNDNQVFAKYN-VSRLQP-YLKLRQALLELRPA-KNVLIDG 157
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2
protein, silver-stainable protein SSP29, acidic prote in
leucines, structural genomics; NMR {Homo sapiens} PDB:
2rr6_A 2jqd_A
Length = 168
Score = 63.6 bits (155), Expect = 3e-12
Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 6/128 (4%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N I + +F +LE L + N + ++ +P L+ L L+ N I LD + +
Sbjct: 37 NDGKIEGLTAEFVNLEFLSLINVGLISVS--NLPKLPKLKKLELSENRIFGGLDMLAEKL 94
Query: 165 MNLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLA---PRLFLKLSKLKSLDL 220
NL L L NK++ I + L L+ L L + ++ L +F L +L LD
Sbjct: 95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154
Query: 221 SYNDIVEI 228
+ E
Sbjct: 155 YDREDQEA 162
Score = 59.8 bits (145), Expect = 8e-11
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
L+ +N + +NL+ L L + S+ S L L+ L L+ NRI
Sbjct: 29 LVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG 85
Query: 204 LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
L KL L L+LS N + +I+ ++ LK +C
Sbjct: 86 GLDMLAEKLPNLTHLNLSGNKLKDIS-----TLEPLKKLEC 121
Score = 55.9 bits (135), Expect = 2e-09
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 4/112 (3%)
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSI 390
+ EL + K + ++ +L L + + V N L KL KLK L +
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL--ISVSN-LPKLPKLKKLEL 78
Query: 391 ADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRN 441
++ L + P+L LNLSGN L+DI L + L LDL
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
Score = 55.1 bits (133), Expect = 3e-09
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
++R+L + ++ + + V L+ LS+ ++ + P L+ L LS N
Sbjct: 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELSEN 81
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+ ++L + LTHL+LS NK K
Sbjct: 82 RIFGGLDMLAEKLPNLTHLNLSGNKLKDIST 112
Score = 46.7 bits (111), Expect = 2e-06
Identities = 32/166 (19%), Positives = 64/166 (38%), Gaps = 35/166 (21%)
Query: 283 DLKKLETLLLDGNHFPVILEKSFSSQF-KLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341
+ L+LD + +++F L+ L L L V+ L L +L++S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSN--LPKLPKLKKLELS 79
Query: 342 YNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKG 401
N++ + + N L L +SGN ++ + L LK L
Sbjct: 80 ENRIFGGLDMLAEKLPN-LTHLNLSGNKLKD------ISTLEPLKKL------------- 119
Query: 402 LFKMNPHLQFLNLSGNNLQDIHNLLYQSNI-----KLTHLDLSRNK 442
L+ L+L + ++++ Y+ ++ +LT+LD +
Sbjct: 120 -----ECLKSLDLFNCEVTNLND--YRESVFKLLPQLTYLDGYDRE 158
Score = 46.3 bits (110), Expect = 3e-06
Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 8/150 (5%)
Query: 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN 253
+ + +L R + +L LD ++ +I + + L+ + GL +++
Sbjct: 8 MDMKRRIHLELRNRTPAAVREL-VLDNCKSNDGKI-EGLTAEFVNLEFLSLINVGLISVS 65
Query: 254 PMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFK-LQ 312
+ L L L+L N++ L E L L L L GN I + + L+
Sbjct: 66 NL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLK 123
Query: 313 VLCLKRNRLAKVT---TTAFTNLTNLIELD 339
L L + + + F L L LD
Sbjct: 124 SLDLFNCEVTNLNDYRESVFKLLPQLTYLD 153
Score = 42.0 bits (99), Expect = 9e-05
Identities = 28/128 (21%), Positives = 49/128 (38%), Gaps = 9/128 (7%)
Query: 266 LDLGYNQLKYLLADEL-EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKV 324
L L + + L + LE L L + + KL+ L L NR+
Sbjct: 29 LVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG 86
Query: 325 TTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSD--VKNVLD 380
L NL L++S NKL + + +P++ L+ L + + + ++V
Sbjct: 87 LDMLAEKLPNLTHLNLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144
Query: 381 KLVKLKAL 388
L +L L
Sbjct: 145 LLPQLTYL 152
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich
repeat, LRR, system; 2.10A {Petromyzon marinus}
Length = 174
Score = 61.1 bits (149), Expect = 3e-11
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
+ Q L+L+ N+I + VF HL +L+ L N+++ + +F KL++L LDL+ N
Sbjct: 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Score = 57.6 bits (140), Expect = 5e-10
Identities = 33/87 (37%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P + L L +N IT L F ++NLQ+LY + NK+ +IP+ VF L+ L L L
Sbjct: 30 GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 198 HNRISKLAPR-LFLKLSKLKSLDLSYN 223
N + K PR F L L + L N
Sbjct: 90 DNHL-KSIPRGAFDNLKSLTHIYLYNN 115
Score = 50.3 bits (121), Expect = 1e-07
Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 27/130 (20%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + ++ S+P+ + +D + L L +N+I+KL P +F L L+ L + N +
Sbjct: 13 DQTLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL 69
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
I +F L L LDL N LK + ++LK
Sbjct: 70 TAIPTGVFDK------------------------LTQLTQLDLNDNHLKSIPRGAFDNLK 105
Query: 286 KLETLLLDGN 295
L + L N
Sbjct: 106 SLTHIYLYNN 115
Score = 44.6 bits (106), Expect = 2e-05
Identities = 23/77 (29%), Positives = 30/77 (38%)
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
I D L L NQ+ L + L L+ L + N I F +L L L
Sbjct: 31 IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90
Query: 319 NRLAKVTTTAFTNLTNL 335
N L + AF NL +L
Sbjct: 91 NHLKSIPRGAFDNLKSL 107
Score = 41.9 bits (99), Expect = 1e-04
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 333 TNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDV-KNVLDKLVKLKALSIA 391
T+ L ++ N++ +LE FD + N L+ L + N +L+ + V DKL +L L +
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVN-LQQLYFNSN--KLTAIPTGVFDKLTQLTQLDLN 89
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGN 417
D + IP+G F L + L N
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 40.3 bits (95), Expect = 4e-04
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
Q L L N++ K+ F +L NL +L + NKL + FD + L L ++ N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQ-LTQLDLNDN--H 92
Query: 372 LSDV-KNVLDKLVKLK 386
L + + D L L
Sbjct: 93 LKSIPRGAFDNLKSLT 108
Score = 37.6 bits (88), Expect = 0.003
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
I + L ++ N I V D LV L+ L T IP G+F L L+L+
Sbjct: 31 IPTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRN 441
N+L+ I + + LTH+ L N
Sbjct: 90 DNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 33.8 bits (78), Expect = 0.055
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
T + G+F +LQ L + N L I ++ +LT LDL+ N K
Sbjct: 46 TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY,
crystallography, immune system; 1.55A {Petromyzon
marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Length = 170
Score = 60.7 bits (148), Expect = 4e-11
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
Q LYL N+I + VF L+ L L L +N+++ L +F KL++L L L+ N
Sbjct: 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88
Score = 58.0 bits (141), Expect = 3e-10
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLA 197
G+P + + L L N IT L F + L L LD N++ +P+ VF L+ L LSL
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 198 HNRISKLAPR-LFLKLSKLKSLDLSYN 223
N++ K PR F L L + L N
Sbjct: 87 DNQL-KSIPRGAFDNLKSLTHIWLLNN 112
Score = 50.7 bits (122), Expect = 1e-07
Identities = 31/130 (23%), Positives = 52/130 (40%), Gaps = 27/130 (20%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ + + S+P+ + + +VL L N+I+KL P +F +L++L LDL N +
Sbjct: 10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL 66
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+ +F L L L L NQLK + ++LK
Sbjct: 67 TVLPAGVFDK------------------------LTQLTQLSLNDNQLKSIPRGAFDNLK 102
Query: 286 KLETLLLDGN 295
L + L N
Sbjct: 103 SLTHIWLLNN 112
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
QVL L N++ K+ F LT L LD+ N+L L FD + L L ++ N Q
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQ-LTQLSLNDN--Q 89
Query: 372 LSDV-KNVLDKLVKLK 386
L + + D L L
Sbjct: 90 LKSIPRGAFDNLKSLT 105
Score = 38.4 bits (90), Expect = 0.002
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
I + + L + N I V D+L +L L + + T +P G+F L L+L+
Sbjct: 28 IPTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 416 GNNLQDIHNLLYQSNIKLTHLDLSRN 441
N L+ I + + LTH+ L N
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHIWLLNN 112
Score = 38.0 bits (89), Expect = 0.003
Identities = 29/129 (22%), Positives = 45/129 (34%), Gaps = 28/129 (21%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
T C L ++ I L L NQ+ KLE
Sbjct: 12 TTVDCSGKSLASVPT---GIPTTTQVLYLYDNQIT-----------KLE----------- 46
Query: 300 ILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS 359
F +L L L N+L + F LT L +L ++ N+L + +FD ++ S
Sbjct: 47 --PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLK-S 103
Query: 360 LRDLKISGN 368
L + + N
Sbjct: 104 LTHIWLLNN 112
Score = 34.1 bits (79), Expect = 0.044
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 396 TDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
T + G+F L L+L N L + ++ +LT L L+ N+ K
Sbjct: 43 TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91
Score = 28.4 bits (64), Expect = 3.5
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 410 QFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
Q L L N + + ++ +LT LDL N+
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear
protein; 2.40A {Homo sapiens} PDB: 2je1_A
Length = 149
Score = 60.1 bits (146), Expect = 5e-11
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISK 203
L+ + +N L L+ L + SI + L+ L+ L L+ NR+S
Sbjct: 22 LVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSG 78
Query: 204 LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
L K L L+LS N I +++ I+ LK +
Sbjct: 79 GLEVLAEKCPNLTHLNLSGNKIKDLS-----TIEPLKKLEN 114
Score = 58.9 bits (143), Expect = 1e-10
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
N + + +F+ LE L N + +I + L+ L L+ N ++ L+ +
Sbjct: 30 NEGKLEGLTDEFEELEFLSTINVGLTSIA--NLPKLNKLKKLELSDNRVSGGLEVLAEKC 87
Query: 165 MNLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLA---PRLFLKLSKLKSLD 219
NL L L NKI+ + + L +L+ L L + ++ L +F L +L LD
Sbjct: 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146
Score = 55.1 bits (133), Expect = 2e-09
Identities = 27/112 (24%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSI 390
+++ EL + ++ + ++ L L + + + N L KL KLK L +
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL--TSIAN-LPKLNKLKKLEL 71
Query: 391 ADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY-QSNIKLTHLDLSRN 441
+D + + L + P+L LNLSGN ++D+ + + L LDL
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
Score = 55.1 bits (133), Expect = 2e-09
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
+ +++L + + ++ + D+ +L+ LS ++ T I L+ L LS N
Sbjct: 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDN 74
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+ +L + LTHL+LS NK K
Sbjct: 75 RVSGGLEVLAEKCPNLTHLNLSGNKIKDLST 105
Score = 55.1 bits (133), Expect = 3e-09
Identities = 28/132 (21%), Positives = 52/132 (39%), Gaps = 28/132 (21%)
Query: 166 NLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
+++EL LD ++ + +L LS + ++ +A KL+KLK L+LS N
Sbjct: 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLELSDNR 75
Query: 225 IVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLL-ADELED 283
+ + + L L+L N++K L + L+
Sbjct: 76 VSGGLEVLAEKCPNLTH------------------------LNLSGNKIKDLSTIEPLKK 111
Query: 284 LKKLETLLLDGN 295
L+ L++L L
Sbjct: 112 LENLKSLDLFNC 123
Score = 46.2 bits (110), Expect = 3e-06
Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 35/162 (21%)
Query: 282 EDLKKLETLLLDGNHFPVI-LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
++ L+LD + LE +L+ L L + L L +L++
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN--LPKLNKLKKLEL 71
Query: 341 SYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPK 400
S N++ + N L L +SGN I+ L + LK L
Sbjct: 72 SDNRVSGGLEVLAEKCPN-LTHLNLSGNKIKD------LSTIEPLKKL------------ 112
Query: 401 GLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI-----KLTHLD 437
+L+ L+L + ++++ Y+ N+ +LT+LD
Sbjct: 113 ------ENLKSLDLFNCEVTNLND--YRENVFKLLPQLTYLD 146
Score = 39.7 bits (93), Expect = 4e-04
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 8/112 (7%)
Query: 281 LEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDI 340
++ ++LE L I + KL+ L L NR++ NL L++
Sbjct: 38 TDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95
Query: 341 SYNKLDRLEVASFDPIEN--SLRDLKISGNNIQLSD--VKNVLDKLVKLKAL 388
S NK+ L + +P++ +L+ L + + + +NV L +L L
Sbjct: 96 SGNKIKDLS--TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 57.8 bits (140), Expect = 3e-09
Identities = 51/324 (15%), Positives = 98/324 (30%), Gaps = 55/324 (16%)
Query: 142 SLRYLNLTHNNITS-----LLDYNFKGMMNLQELYLDFNKIESIPSSVFM-HLSDLRVLS 195
SLR LNL +T + G L E+ L +++ + R L
Sbjct: 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132
Query: 196 LAHNRIS-----KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQE-LKTFKCRSCGL 249
L N + L L ++ +L LS N + + E L + +
Sbjct: 133 LQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNP---LTAAGVAVLMEGLAG----NTSV 185
Query: 250 ENINPMMYSILADLIYLDLGYNQLKY----LLADELEDLKKLETLLLDGNHFP----VIL 301
+L L + L LLA +L+ ++L+ L + N + L
Sbjct: 186 T--------------HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231
Query: 302 EKSFSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
++ L++L L N L +V + +S + + +
Sbjct: 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILS 291
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
R+L +++ L L+ A +N + L ++ ++ L
Sbjct: 292 EVQRNLNSWDR---ARVQRHLELLLRDLEDSRGATLNPWRKAQLL-RVEGEVRALLEQLG 347
Query: 418 NLQD-----IHNLLYQSNIKLTHL 436
+ H + H
Sbjct: 348 SSGSPSGSWSHPQF-EKGAGHHHH 370
Score = 48.9 bits (117), Expect = 2e-06
Identities = 43/276 (15%), Positives = 85/276 (30%), Gaps = 56/276 (20%)
Query: 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN 253
L AHNR + +L + L +L+ + ++ + + + E N
Sbjct: 6 LLSAHNR--AVLAQLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQN 63
Query: 254 PMMY-SILADLIYLDLGYNQLKY----LLADELEDLKK-LETLLLDGNHFPVILEKSFSS 307
+L+ L L+L ++ ++A L + L+ + L ++
Sbjct: 64 QRFSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLP 123
Query: 308 QFK-LQVLCLKRNRL----AKVTTTAFT-NLTNLIELDISYNKL---------DRLEVAS 352
F + L L+ N L K + + L +S N L + L +
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNT 183
Query: 353 FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFL 412
S+ L + + ++ +A N LQ L
Sbjct: 184 ------SVTHLSLLHTGLGDEGLE------------LLAAQ---------LDRNRQLQEL 216
Query: 413 NLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKF 443
N++ N D + + + L L L N+
Sbjct: 217 NVAYNGAGDTAALALARAA-REHPSLELLHLYFNEL 251
Score = 42.4 bits (100), Expect = 2e-04
Identities = 30/180 (16%), Positives = 55/180 (30%), Gaps = 36/180 (20%)
Query: 141 PSLRYLNLTHNNIT--------SLLDYNFKGMMNLQELYLDFNKIESIP----SSVFMHL 188
S+ +L+L H + + LD N LQEL + +N +
Sbjct: 183 TSVTHLSLLHTGLGDEGLELLAAQLDRN----RQLQELNVAYNGAGDTAALALARAAREH 238
Query: 189 SDLRVLSLAHNRIS-----KLAPRLFLK--LSKLKSLDLSYNDIVEINPEIFKDIQELKT 241
L +L L N +S L +++ + E I ++Q
Sbjct: 239 PSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSEVQRNLN 298
Query: 242 FKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL----LADELEDLKKLETLLLDGNHF 297
R+ ++ +L+ DL ++ L A L ++ LL
Sbjct: 299 SWDRARVQRHL---------ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSS 349
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat,
signaling protein; HET: IHP; 1.80A {Arabidopsis
thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B*
3c6o_B* 3c6p_B*
Length = 594
Score = 58.4 bits (141), Expect = 3e-09
Identities = 62/372 (16%), Positives = 123/372 (33%), Gaps = 63/372 (16%)
Query: 106 HLTIGPIFQQFQHLEELHITNSFIPAIGFHPF-WGVPSLRYLNLTH-NNITSL-LDYNFK 162
+ I + + LEE+ + + + + L L+ ++ L
Sbjct: 94 YPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSD----LRVLSLA--HNRISKLA-PRLFLKLSKL 215
NL+EL L + ++ + H D L L+++ + +S A RL + L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
KSL L+ +E + + +L+ + P +YS L+
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGY-TAEVRPDVYSGLSVA------------ 260
Query: 276 LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTA----FTN 331
L K+L L + P L +S +L L L V +
Sbjct: 261 -----LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT---VQSYDLVKLLCQ 312
Query: 332 LTNLIELDISYNKLDRLEVASFDPIENSLRDLK----------ISGNNIQLSD--VKNVL 379
L L + D +E A + + ++ +DL+ + N+ L++ + +V
Sbjct: 313 CPKLQRLWVL----DYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368
Query: 380 DKLVKLKALSIADMNYTDIP-KGLFKMNPHLQFLNLSGNNLQDIHNL-----------LY 427
KL+++ T+ + + P++ L + L +
Sbjct: 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIV 428
Query: 428 QSNIKLTHLDLS 439
+ L L LS
Sbjct: 429 EHCKDLRRLSLS 440
Score = 51.4 bits (123), Expect = 4e-07
Identities = 55/355 (15%), Positives = 109/355 (30%), Gaps = 52/355 (14%)
Query: 109 IGPIFQQFQHLEEL-------HITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNF 161
+ + L L ++ S + + P+L+ L L L
Sbjct: 176 LSHFPDTYTSLVSLNISCLASEVSFSALERLV----TRCPNLKSLKLNRAVPLEKLATLL 231
Query: 162 KGMMNLQELYLDFNKIESIP------SSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKL 215
+ L+EL E P S +LR LS + + P ++ S+L
Sbjct: 232 QRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRL 291
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFK----CRSCGLENINPMMYSILADLIYLDLGYN 271
+L+LSY + + ++ K + + + + + S DL L + +
Sbjct: 292 TTLNLSYATV--QSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA-STCKDLRELRVFPS 348
Query: 272 QLKYL----------LADELEDLKKLETLLLDGNHF-PVILEKSFSSQFKLQV--LCLKR 318
+ + L KLE++L L ++ + LC+
Sbjct: 349 EPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408
Query: 319 NRLAKVTTTAFT---------NLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
+ T + +L L +S D+ + L ++
Sbjct: 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDK-VFEYIGTYAKKMEMLSVAFAG 467
Query: 370 IQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMN---PHLQFLNLSGNNLQD 421
+ +VL L+ L I D + D K L ++ L +S ++
Sbjct: 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANASKLETMRSLWMSSCSVSF 520
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin
ligase, SCF, protein binding; HET: OGK; 2.80A
{Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Length = 592
Score = 56.1 bits (135), Expect = 1e-08
Identities = 50/370 (13%), Positives = 111/370 (30%), Gaps = 48/370 (12%)
Query: 112 IFQQFQHLEELHITNSFIPAIGF----HPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNL 167
+ Q LE L+ + I SL + + I L+ + FK NL
Sbjct: 187 LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANL 245
Query: 168 QEL-YLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA-PRLFLKLSKLKSLDLSYNDI 225
+E N+ +P + ++ L + + P LF ++++ LDL Y +
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305
Query: 226 V-EINPEIFKDIQELKTFKCRSC----GLENINPMMYSILADLIYLDLGYNQLKYLLADE 280
E + + + L+ + R+ GLE + L L + + + DE
Sbjct: 306 ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLA----QYCKQLKRLRIERGADEQGMEDE 361
Query: 281 LEDL------------KKLETLLLDGNHF----PVILEKSFSSQFKLQVLCLKRNRLAKV 324
+ ++LE + + + + + +++ L R
Sbjct: 362 EGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITD 421
Query: 325 TTT------AFTNLTNLIELDISYN--KLDRLEVASFDPIENSLRDLKISGNNIQLSDVK 376
L L L ++ ++R + + +
Sbjct: 422 LPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481
Query: 377 NVLDKLVKLKALSIADMNYTDIPKGLFKMN---PHLQFLNLSGNNLQDIHNLLY---QSN 430
L+ L + +++ + + P L++L + G L +
Sbjct: 482 EFSRGCPNLQKLEMRGCCFSE--RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539
Query: 431 IKLTHLDLSR 440
+ + R
Sbjct: 540 WNIELIPSRR 549
Score = 53.4 bits (128), Expect = 1e-07
Identities = 40/317 (12%), Positives = 105/317 (33%), Gaps = 35/317 (11%)
Query: 141 PSLRYLNLTHNNIT--SLLDYNFKGMMNLQELYLDF-NKI-ESIPSSVFMHLSDLRVLSL 196
L+ ++ ++ L +L+ L LD + S+ H ++ L +
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171
Query: 197 AHNRISKLAPRLFLKLSK----LKSLDLSYNDIVEINPEIFKDIQE----LKTFKCRSCG 248
+ S+ + +L++ L+ L+ + +I+P+ + I L + K
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231
Query: 249 LENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF--PVILEKSFS 306
+ + A+L G + ++ +L L G + P + F
Sbjct: 232 ILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFP 290
Query: 307 SQFKLQVLCLKRNRL-AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKI 365
+++ L L L + T NL L+ + + + + + LK
Sbjct: 291 FAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR----NVIGDRGLEVLAQYCKQLK- 345
Query: 366 SGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIP-KGLFKMNPHLQFLNLSGNNLQD--I 422
+L +++ + + + + L + L+++ + +++ + +
Sbjct: 346 -----RLR-----IERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395
Query: 423 HNLLYQSNIKLTHLDLS 439
++ L L
Sbjct: 396 ESIG-TYLKNLCDFRLV 411
Score = 41.9 bits (98), Expect = 4e-04
Identities = 49/273 (17%), Positives = 94/273 (34%), Gaps = 33/273 (12%)
Query: 198 HNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSC-----GLENI 252
+ RL + L+SL L + I ++ T L+++
Sbjct: 58 ALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSV 117
Query: 253 NPMMYSIL-ADLIYLDLGY-NQLKYL------------LADELEDLKKLETLLLDGNHFP 298
+ + DL L + L+ L L + +K++TLL++ + F
Sbjct: 118 HFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS 177
Query: 299 VILEKSFSSQFK----LQVLCLKRNRLAKVTTTA----FTNLTNLIELDISYNKLDRLEV 350
K + L+VL AK++ N +L+ + + + LE+
Sbjct: 178 EKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD--FEILEL 235
Query: 351 ASFDPIENSLRDLKISG--NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPH 408
F +L + +I + + L KL L ++ M ++P LF
Sbjct: 236 VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQ 294
Query: 409 LQFLNLSGNNLQ-DIHNLLYQSNIKLTHLDLSR 440
++ L+L L+ + H L Q L L+
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRN 327
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 2e-06
Identities = 52/281 (18%), Positives = 88/281 (31%), Gaps = 98/281 (34%)
Query: 87 QMD------LGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFW-G 139
+ D G +L IV NP +LTI ++ + + E + A+ F G
Sbjct: 1648 RADNHFKDTYGFSILDIV--INNPVNLTIHFGGEKGKRIRENYS------AMIFETIVDG 1699
Query: 140 VPSLRYLNLTHNNITSLLDYNF---KGMMNLQEL---------YLDFNKIES---IPSSV 184
+ N ++ Y F KG+++ + F ++S IP+
Sbjct: 1700 KLKTEKIFKEINEHST--SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADA 1757
Query: 185 FM--H----------------LSDLRVLSLAHNR---ISKLAPRLFLKLSKLKSLDLSYN 223
H + L + + R + PR L S
Sbjct: 1758 TFAGHSLGEYAALASLADVMSIESL--VEVVFYRGMTMQVAVPR--------DELGRSNY 1807
Query: 224 DIVEINP-EIFKDI-QELKTFKCRSCG------LENINPMMYSILADLIYLDLGYN---- 271
++ INP + QE + G +E +N YN
Sbjct: 1808 GMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVN----------------YNVENQ 1851
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVI----LEKSFSSQ 308
Q Y+ A +L L + T +L+ I L+KS S +
Sbjct: 1852 Q--YVAAGDLRALDTV-TNVLNFIKLQKIDIIELQKSLSLE 1889
Score = 48.9 bits (116), Expect = 4e-06
Identities = 35/222 (15%), Positives = 63/222 (28%), Gaps = 71/222 (31%)
Query: 142 SLRYLNLTHNNI-TSLL----DYNFKGMMNLQELYLDFNKIESI----------PSSV-- 184
S R L L+H ++ LL + +L FNKI P++
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASF-----FIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 185 ----FM-HLSDL----------RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN 229
F+ ++S L +VL+L +L+ + + +L +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE----NCYLEGNDIHALAAKLLQENDTT 115
Query: 230 PEIFKDIQELKT-FKCRSCGLENINPMMYSILADL-------IYLDLG--YNQLKYLLAD 279
K++ +K R + S L + G N Y +
Sbjct: 116 LVKTKEL--IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF--E 171
Query: 280 ELEDL----------------KKLETLLLDGNHFPVILEKSF 305
EL DL + L L+ + +
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL 213
Score = 39.6 bits (92), Expect = 0.002
Identities = 55/334 (16%), Positives = 94/334 (28%), Gaps = 113/334 (33%)
Query: 186 MHLSDLRVLSLAHNRI--SKLAP-RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
M R L+L+H + L P F S+L+ E F I T
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQ--------------EQFNKILPEPT- 45
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILE 302
++ P + A+L+ LGY ++ +E K F +L
Sbjct: 46 --EGFAADD-EP---TTPAELVGKFLGY------VSSLVEPSKV--------GQFDQVLN 85
Query: 303 ---KSFSSQFKLQVLCLKRN-------RLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
F + + L+ N +L + T LI+ +Y +
Sbjct: 86 LCLTEFENCY------LEGNDIHALAAKLLQENDTTLVKTKELIK---NYITARIMAKRP 136
Query: 353 FDPIENS--LRDLKISGNNI------QLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFK 404
FD NS R + + Q + + ++L L Y L
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQ-GNTDDYFEELRDL---------Y-QTYHVLVG 185
Query: 405 MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF--KGFDEKSYIMSEPKNIHKA 462
+ S L + L L K +G + ++ P N
Sbjct: 186 -----DLIKFSAETLSE-----------LIRTTLDAEKVFTQGLNILEWL-ENPSNTP-- 226
Query: 463 AKNSFALQSSMGKNAEYAVFIASSSISYLLEALL 496
+ +Y + S IS L ++
Sbjct: 227 -------------DKDY---LLSIPISCPLIGVI 244
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor,
GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB:
3rez_A*
Length = 130
Score = 43.3 bits (102), Expect = 2e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 179 SIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYN 223
S+P++ D L L N ++ L P L L L++ L N
Sbjct: 24 SLPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 42.9 bits (101), Expect = 3e-05
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
+ EL L N + ++P + L LR L N
Sbjct: 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 39.8 bits (93), Expect = 3e-04
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 139 GVP-SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
P L LT NN+T+L + L+ +L N
Sbjct: 28 AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65
Score = 35.2 bits (81), Expect = 0.013
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
D L L N L L L+ L L T L N +
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 35.2 bits (81), Expect = 0.013
Identities = 11/46 (23%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
+P L L+GNNL + L + L L N +
Sbjct: 25 LPTAFP---VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67
Score = 33.6 bits (77), Expect = 0.039
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 312 QVLC-LKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGN 368
V C + A + T + T EL ++ N L L D + LR + N
Sbjct: 12 LVDCGRRGLTWASLPTAFPVDTT---ELVLTGNNLTALPPGLLDALPA-LRTAHLGAN 65
Score = 33.2 bits (76), Expect = 0.063
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 311 LQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLD 346
L L N L + L L + N
Sbjct: 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68
Score = 29.8 bits (67), Expect = 0.92
Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 25/72 (34%)
Query: 356 IENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLS 415
+L ++GNN+ T +P GL P L+ +L
Sbjct: 29 FPVDTTELVLTGNNL-------------------------TALPPGLLDALPALRTAHLG 63
Query: 416 GNNLQDIHNLLY 427
N + L+
Sbjct: 64 ANPWRCDCRLVP 75
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport
element (CTE), RNA recogni motif (RRM); HET: GTP CCC;
2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A
1fo1_A
Length = 267
Score = 44.2 bits (104), Expect = 4e-05
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 149 THNNITSLLDYNFKGMMNLQELYLDFNKIESIP--SSVFMHLSDLRVLSLAHNRISKLAP 206
+ + + L + + L L L N++ + SS+ +L++L+L+ N +
Sbjct: 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE 213
Query: 207 RLFLKLSKLKSLDLSYNDIVEINPE 231
+K KL+ L L N + + +
Sbjct: 214 LDKIKGLKLEELWLDGNSLCDTFRD 238
Score = 44.2 bits (104), Expect = 5e-05
Identities = 24/117 (20%), Positives = 53/117 (45%), Gaps = 5/117 (4%)
Query: 343 NKLDRLEVASFDPIENSLR-DLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIP-- 399
+ L+ DP + D+ ++ + + ++ + + + +L +L++++ +
Sbjct: 129 QQALDLKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDM 188
Query: 400 KGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF--KGFDEKSYIMS 454
+ + P+L+ LNLSGN L+ L +KL L L N D+ +YI +
Sbjct: 189 SSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245
Score = 36.1 bits (83), Expect = 0.018
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 11/125 (8%)
Query: 273 LKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT--TTAFT 330
LK L +D + ++ +L + L + +L L L NRL ++ ++
Sbjct: 134 LKGLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193
Query: 331 NLTNLIELDISYNKLDRLEVASFDPIEN-SLRDLKISGNNI--QLSDVKN----VLDKLV 383
NL L++S N+L D I+ L +L + GN++ D + ++
Sbjct: 194 KAPNLKILNLSGNELKSER--ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFP 251
Query: 384 KLKAL 388
KL L
Sbjct: 252 KLLRL 256
Score = 32.7 bits (74), Expect = 0.23
Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 216 KSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKY 275
++LDL D+ L C + L I + +L+ L+L N+L
Sbjct: 130 QALDLKGLRSDPDLVAQNIDVV-LNRRSCMAATLRIIE----ENIPELLSLNLSNNRLYR 184
Query: 276 L--LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L ++ ++ L+ L L GN E KL+ L L N
Sbjct: 185 LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGN 230
Score = 31.9 bits (72), Expect = 0.37
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 112 IFQQFQHLEELHITNSFIPAIG--FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQE 169
I + L L+++N+ + + P+L+ LNL+ N + S + + + L+E
Sbjct: 165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEE 224
Query: 170 LYLDFNKIESIPSS 183
L+LD N +
Sbjct: 225 LWLDGNSLCDTFRD 238
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR,
cell cycle, protein turnover COM ligase-ligase inhibitor
complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1
c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Length = 336
Score = 44.1 bits (104), Expect = 7e-05
Identities = 47/271 (17%), Positives = 100/271 (36%), Gaps = 23/271 (8%)
Query: 183 SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
+F L +L ++ + K RL S ++LDL+ ++P++ +
Sbjct: 19 GIFSCLCLPELLKVS--GVCKRWYRLASDESLWQTLDLTGK---NLHPDVTGRLLSQGVI 73
Query: 243 KCRSCGLENINPMMYSI-LADLIYLDLGYNQLKY-LLADELEDLKKLETLLLDGNHFPVI 300
R P+ + ++DL + ++ L L KL+ L L+G
Sbjct: 74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP 133
Query: 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAF----TNLTNLIELDISYNKL--DRLEVASFD 354
+ + + L L L + + + A ++ + L EL++S+ ++ +
Sbjct: 134 IVNTLAKNSNLVRLNL--SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA 191
Query: 355 PIENSLRDLKISGNNIQLSD--VKNVLDKLVKLKALSIAD-MNYTDIPKGLFKMN--PHL 409
+ ++ L +SG L + ++ + L L ++D + + + +L
Sbjct: 192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFQLNYL 249
Query: 410 QFLNLSGNNLQDIHNLLYQSNIK-LTHLDLS 439
Q L+LS LL I L L +
Sbjct: 250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280
Score = 41.8 bits (98), Expect = 3e-04
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSG-N 417
++ + +S + I++S + +L + KL+ LS+ + +D N +L LNLSG +
Sbjct: 94 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 153
Query: 418 NLQDIH-NLLYQSNIKLTHLDLSR 440
+ L S +L L+LS
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSW 177
Score = 36.0 bits (83), Expect = 0.022
Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 8/123 (6%)
Query: 108 TIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTH-NNITSL-LDYNFKGMM 165
T+ I Q L+ L + + + +L LNL+ + + L
Sbjct: 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 168
Query: 166 NLQELYLDF-NKI--ESIPSSVFMHLSDLRVLSLA--HNRISKLAPRLFLK-LSKLKSLD 219
L EL L + + + +V + L+L+ + K ++ L LD
Sbjct: 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228
Query: 220 LSY 222
LS
Sbjct: 229 LSD 231
Score = 35.2 bits (81), Expect = 0.044
Identities = 42/238 (17%), Positives = 75/238 (31%), Gaps = 31/238 (13%)
Query: 152 NITSLLDYNFKGMMNLQELYLDFNKIESIP-SSVFMHLSDLRVLSLAHNRISKLAPRLFL 210
+ +Q + L + IE + S L+ LSL R+S
Sbjct: 80 SFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA 139
Query: 211 KLSKLKSLDLSY-----NDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
K S L L+LS ++ + EL C +++ + + +
Sbjct: 140 KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQ 199
Query: 266 LDL-GYNQ------LKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQF---KLQVLC 315
L+L GY + L L + L L L + + F F LQ L
Sbjct: 200 LNLSGYRKNLQKSDLSTL----VRRCPNLVHLDLSDSVM--LKNDCFQEFFQLNYLQHLS 253
Query: 316 LKRNRLAKVTTTAF---TNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNI 370
L R + + L L + D + ++ +L L+I+ ++
Sbjct: 254 LSRCY--DIIPETLLELGEIPTLKTLQVFGIVPD----GTLQLLKEALPHLQINCSHF 305
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 43.8 bits (102), Expect = 9e-05
Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 60/289 (20%)
Query: 133 GFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLR 192
G + + + L Y + ++ + ++ + + +F D
Sbjct: 93 GVNLMDKILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFE 152
Query: 193 VLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENI 252
++ L+P L + L +L + + + I + +++ L +
Sbjct: 153 EQEISWIEQVDLSPVLD-AMPLLNNLKIKGTNNLSIGKKPRPNLKSL-EIISGGLPDSVV 210
Query: 253 NPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQ 312
++ S L +L L L Y ++ + L + FP L+
Sbjct: 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL----FSKDRFP-----------NLK 255
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQL 372
L + V F L L + IS +
Sbjct: 256 WLGIVDAEEQNVVVEMFLESDIL----------------------PQLETMDISAGVLTD 293
Query: 373 SDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD 421
+ +LD + HL+F+N+ N L D
Sbjct: 294 EGARLLLDHV---------------------DKIKHLKFINMKYNYLSD 321
Score = 38.0 bits (87), Expect = 0.006
Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 26/151 (17%)
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKIS------------ 366
+ + + NL L LE+ S ++ + D+ S
Sbjct: 169 DAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228
Query: 367 -----GNNIQLSDVKNVL--DKLVKLKALSIADMNYTDIPKGLF---KMNPHLQFLNLSG 416
G + ++ + + D+ LK L I D ++ +F + P L+ +++S
Sbjct: 229 GVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288
Query: 417 NNLQD--IHNLL--YQSNIKLTHLDLSRNKF 443
L D LL L +++ N
Sbjct: 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein
binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Length = 185
Score = 36.9 bits (86), Expect = 0.007
Identities = 14/105 (13%), Positives = 39/105 (37%), Gaps = 17/105 (16%)
Query: 353 FDPIENSLRDLKISGNNIQLSDVKNVLDKLVK----LKALSIADMNY------TDIPKGL 402
+ + + + +DV+ L ++ L+ +++ ++ + L
Sbjct: 2 LNSVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL 61
Query: 403 FKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNK 442
K N +++ ++ G D + +L + N L L++ N
Sbjct: 62 -KTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNF 104
Score = 33.4 bits (77), Expect = 0.086
Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 10/72 (13%)
Query: 381 KLVKLKALSIADMNYTDIPKGLFKM---NPHLQFLNLSGNN------LQDIHNLLYQSNI 431
K K K + + N TD+ + L ++ +P L+ +NL+ L+ L ++N
Sbjct: 7 KPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNT 65
Query: 432 KLTHLDLSRNKF 443
+ + +
Sbjct: 66 YVKKFSIVGTRS 77
Score = 32.7 bits (75), Expect = 0.15
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
++ I G A ++A+M K+N L+ LN+ N
Sbjct: 66 YVKKFSIVGTRSNDPV------------AFALAEM---------LKVNNTLKSLNVESNF 104
Query: 419 LQD-----IHNLLYQSNIKLTHLDLSRNK 442
+ + L QSN L L +
Sbjct: 105 ISGSGILALVEAL-QSNTSLIELRIDNQS 132
Score = 31.1 bits (71), Expect = 0.47
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 11/66 (16%)
Query: 171 YLDFNKIESIPSSVFMHLSD-------LRVLSLAHNRISKLAPRLF---LKLSK-LKSLD 219
++ N I +IP ++ ++ S+ R + LK++ LKSL+
Sbjct: 40 EVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLN 99
Query: 220 LSYNDI 225
+ N I
Sbjct: 100 VESNFI 105
Score = 29.6 bits (67), Expect = 1.8
Identities = 16/116 (13%), Positives = 30/116 (25%), Gaps = 26/116 (22%)
Query: 311 LQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLDR---LEVASFDPIENSLRDL 363
++ + R A L L++ N + L + SL +L
Sbjct: 67 VKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIEL 126
Query: 364 KISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
+I + L + + IA+M + N L
Sbjct: 127 RIDNQSQPLGNNV----------EMEIANM---------LEKNTTLLKFGYHFTQQ 163
Score = 29.2 bits (66), Expect = 2.3
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 24/89 (26%)
Query: 142 SLRYLNLTHNNIT-----SLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
+L+ LN+ N I+ +L++ + +L EL +D + ++V M ++++ L
Sbjct: 94 TLKSLNVESNFISGSGILALVEA-LQSNTSLIELRIDNQSQP-LGNNVEMEIANM----L 147
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
N + L +
Sbjct: 148 EKN-------------TTLLKFGYHFTQQ 163
Score = 28.8 bits (65), Expect = 2.9
Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 37/148 (25%)
Query: 310 KLQVLCLKR-NRLAKVTTTAFTNL----TNLIELDISYNKLDRLEVASF-DPIE--NSLR 361
L+ + L + T A T + + I + + + + ++ N+L+
Sbjct: 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLK 96
Query: 362 DLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ- 420
L + N I S L++ + + N L L + +
Sbjct: 97 SLNVESNFI--SGSG----------ILALVEA---------LQSNTSLIELRIDNQSQPL 135
Query: 421 ------DIHNLLYQSNIKLTHLDLSRNK 442
+I N+L + N L +
Sbjct: 136 GNNVEMEIANML-EKNTTLLKFGYHFTQ 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0,
hydrogen ION transport, inner membrane, ION transport,
membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A
3dze_A 3e2j_A
Length = 176
Score = 34.8 bits (80), Expect = 0.026
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 119 LEELHITNSFIPAIGFHPFWGVPSLRYLNLTH-NNITSLLDYNFKGMMNLQE--LYLDFN 175
++ + T+S I +IGF G+ + + L + I + NLQ+ L ++
Sbjct: 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEII 122
Query: 176 KIESIPSSVFMHLSD---LRVLSLAH-NRISKLAPRLFLKLSKLKSLDLS 221
++ + L L+ L L+ + + + + L SL+L
Sbjct: 123 SCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
Score = 32.5 bits (74), Expect = 0.17
Identities = 15/99 (15%), Positives = 41/99 (41%), Gaps = 14/99 (14%)
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSC------GLENINPMMYSI 259
P L K++++D + + I+ I + + +Q ++ + C LE ++ +
Sbjct: 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQ 113
Query: 260 LADLIYLDLGYNQLKYLLADE----LEDLKKLETLLLDG 294
+ ++ +++ + D+ L + L+ L L
Sbjct: 114 KS-MLEMEIISC---GNVTDKGIIALHHFRNLKYLFLSD 148
Score = 31.0 bits (70), Expect = 0.50
Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 7/73 (9%)
Query: 157 LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR------ISKLAPRLFL 210
L +Q + + I SI L + + L + +L+ L
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112
Query: 211 KLSKLKSLDLSYN 223
+ S + +++
Sbjct: 113 QKS-MLEMEIISC 124
Score = 28.3 bits (63), Expect = 4.4
Identities = 7/66 (10%), Positives = 22/66 (33%), Gaps = 7/66 (10%)
Query: 383 VKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN------LQDIHNLLYQSNIKLTHL 436
K++A+ D I + +++ + L + L+ + L + +
Sbjct: 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQK-SMLEM 119
Query: 437 DLSRNK 442
++
Sbjct: 120 EIISCG 125
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 33.1 bits (75), Expect = 0.11
Identities = 9/55 (16%), Positives = 17/55 (30%), Gaps = 21/55 (38%)
Query: 50 SSASVMCPYMCECA------LDDRGRYEIVCRR-----GDMANPIPIGQMDLGTE 93
+ + CP EC ++ ++VC D + D +E
Sbjct: 18 LNIVLTCP---ECKVYPPKIVERFSEGDVVCALCGLVLSD--KLV-----DTRSE 62
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed
beta-alpha superhelix, leucine-rich repeat structural
genomics; HET: MSE PG4; 1.99A {Bacteroides
thetaiotaomicron}
Length = 329
Score = 30.9 bits (70), Expect = 0.87
Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDF----NKIESIPSSVFMHLSDLRVLSL 196
PSL+ L++++ I +Y+ ++ + V L + L
Sbjct: 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVIL 108
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRS 246
+I + F LK + + PE D S
Sbjct: 109 -SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics secsg; 1.80A {Caenorhabditis
elegans} SCOP: c.10.1.1
Length = 197
Score = 30.2 bits (68), Expect = 1.0
Identities = 19/121 (15%), Positives = 38/121 (31%), Gaps = 33/121 (27%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGV----PSLRYLNLTHNNITS--------LLDYNFKGM 164
+H+E+ + N+ I + PSLR LN+ N +T
Sbjct: 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVT---- 125
Query: 165 MNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYND 224
++ E D + + + V M + + N L + +S+
Sbjct: 126 QSIVEFKADNQRQSVLGNQVEMDMMMA----IEENE-------------SLLRVGISFAS 168
Query: 225 I 225
+
Sbjct: 169 M 169
Score = 29.8 bits (67), Expect = 1.3
Identities = 13/104 (12%), Positives = 39/104 (37%), Gaps = 14/104 (13%)
Query: 359 SLRDLKISG-NNIQLSDVKNVLDKLVK---LKALSIADMNYTDI-PKGLFKM---NPHLQ 410
L+++ I+ + ++++++ ++ S+A+ +D +GL ++ +P L+
Sbjct: 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLR 101
Query: 411 FLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKFKGFDEK 449
LN+ N L + + + +
Sbjct: 102 VLNVESNFLTPELLARLLRST-LVTQSIVEFKADNQRQSVLGNQ 144
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein
biogenesis, GET PAT GET5 binding, protein transport;
1.98A {Chaetomium thermophilum}
Length = 336
Score = 29.2 bits (65), Expect = 2.7
Identities = 16/160 (10%), Positives = 42/160 (26%), Gaps = 9/160 (5%)
Query: 210 LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFK-------CRSCGLENINPMMYSILAD 262
+ + + S ++ K F + +P ++ ++
Sbjct: 85 FRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGT 144
Query: 263 LIYLDLGYNQ-LKYLLADELEDLKKLETLLLD-GNHFPVILEKSFSSQFKLQVLCLKRNR 320
L + + K+L+ E + L + + + ++ L L + R
Sbjct: 145 LYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYCARAVLPYLLVANVR 204
Query: 321 LAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSL 360
A FT+ ++ + L
Sbjct: 205 AANTAYRIFTSALVEDNKGLTVQNIGSQSAELRIFPSLPL 244
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored
protein, protein binding GET4; 1.99A {Saccharomyces
cerevisiae} PDB: 3lku_A
Length = 312
Score = 29.2 bits (65), Expect = 2.8
Identities = 21/134 (15%), Positives = 45/134 (33%), Gaps = 12/134 (8%)
Query: 210 LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF-------KCRSCGLENINPMMYSILAD 262
L+++K D+S +V + E+ LK + + +P +++ +
Sbjct: 83 YDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGS 142
Query: 263 LIYLDLGYNQL-KYLLADELEDLKKLETLLLDGNHFPVILEKS----FSSQFKLQVLCLK 317
+ + +Y + + + K LL D +E S F S+ L +
Sbjct: 143 KLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFIS 202
Query: 318 RNRLAKVTTTAFTN 331
A + F
Sbjct: 203 NISFAHESKDIFLE 216
>3sl1_A Arginase; metallohydrolase, hydrolase-hydrolase inhibit complex;
HET: FB6; 1.90A {Plasmodium falciparum} PDB: 3mmr_A*
3sl0_A*
Length = 413
Score = 29.1 bits (65), Expect = 3.8
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 20 DIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMC 56
D+VE NP + D D + L + +
Sbjct: 367 DLVEYNPSL--DEVDKKVHGDSLPILDNATKTGKLCL 401
>3pie_A 5'->3' exoribonuclease (XRN1); beta berrel, tudor domain, chromo
domain, mRNA turnover, RRN processing, RNA binding, DNA
binding; 2.90A {Kluyveromyces lactis} PDB: 3pif_A
Length = 1155
Score = 29.2 bits (64), Expect = 4.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 139 GVPSL-RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKI 177
G+P +++ I+ L+D + + LYLD N I
Sbjct: 2 GIPKFFHFISERWPQISQLIDGSQIPEFD--NLYLDMNSI 39
>2wzm_A Aldo-keto reductase; oxidoreductase; HET: NA7; 1.64A {Mycobacterium
smegmatis} PDB: 2wzt_A
Length = 283
Score = 28.6 bits (65), Expect = 4.2
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 113 FQQFQHLEELHITNSFIPA---IGFHPFWGVPSLRYLNLTHN 151
F + LE + F PA I HP +LR +N +N
Sbjct: 149 FGA-EDLETIVSLTYFTPAVNQIELHPLLNQAALREVNAGYN 189
>1mzr_A 2,5-diketo-D-gluconate reductase A; alpha/beta-barrel,
aldo-ketoreductase, NADPH dependant, BACT targets at
IGS-CNRS, france, BIGS; 2.13A {Escherichia coli} SCOP:
c.1.7.1
Length = 296
Score = 28.3 bits (64), Expect = 5.3
Identities = 11/37 (29%), Positives = 12/37 (32%), Gaps = 3/37 (8%)
Query: 118 HLEELHITNSFIPA---IGFHPFWGVPSLRYLNLTHN 151
HL+ L P I HP L N TH
Sbjct: 165 HLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHK 201
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 5.4
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 280 ELEDLKKLETLL 291
E + LKKL+ L
Sbjct: 18 EKQALKKLQASL 29
>3o0k_A Aldo/keto reductase; ssgcid, ALS collaborative crystallography;
1.80A {Brucella melitensis biovar}
Length = 283
Score = 28.3 bits (64), Expect = 5.6
Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 118 HLEELHITNSFIPA---IGFHPFWGVPSLRYLNLTHN 151
LE L + P I HP + LR + H+
Sbjct: 168 DLERLIKESGVTPVLNQIELHPQFQQDELRLFHGKHD 204
>1hw6_A 2,5-diketo-D-gluconic acid reductase; aldo-keto reductase, TIM
barrel, oxidoreductase; 1.90A {Corynebacterium SP} SCOP:
c.1.7.1 PDB: 1a80_A* 1m9h_A*
Length = 278
Score = 28.3 bits (64), Expect = 6.2
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 118 HLEELHITNSFIPA---IGFHPFWGVPSLRYLNLTHN 151
HLE + +PA I HP + + H+
Sbjct: 145 HLERIVAATGVVPAVNQIELHPAYQQREITDWAAAHD 181
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated
shape, E3 ubiquitin ligase, E2 ubiquitin conjugating
enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A
Length = 358
Score = 27.9 bits (63), Expect = 8.4
Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 192 RVLSLA--HNRISKLA-PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
VL LA +N I + P + + KL ++ D+ + +P +++ +++L +
Sbjct: 100 IVLGLAIYNNCILDVHFPMVVYR--KLMGKKGTFRDLGDSHPVLYQSLKDLLEY 151
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta
protein (A + B), E3 ligase, HECT domain, UBL-
conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB:
3jvz_C 3jw0_C 2xbf_A 2xbb_A
Length = 392
Score = 27.9 bits (63), Expect = 8.7
Identities = 7/48 (14%), Positives = 18/48 (37%), Gaps = 8/48 (16%)
Query: 3 FTLIFMSKLKSLDLSYNDIVEINPEIFK--------DIQDTTMLFQVT 42
F F + ++ ND+ ++ E + D + ++F +
Sbjct: 156 FIRPFYKMMLGKQITLNDMESVDSEYYNSLKWILENDPTELDLMFCID 203
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex,
phosphoesterase fold, OB fold, zinc-binding motif, DNA
replication; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Length = 206
Score = 27.4 bits (60), Expect = 8.8
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 1/36 (2%)
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDL 268
FKD L+ C SC + S + +
Sbjct: 15 FKDTVTLE-LSCPSCDKRFPFGGIVSSNYYRVSYNG 49
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,323,862
Number of extensions: 445259
Number of successful extensions: 7174
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2249
Number of HSP's successfully gapped: 928
Length of query: 497
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 399
Effective length of database: 3,965,535
Effective search space: 1582248465
Effective search space used: 1582248465
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)