RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10289
(497 letters)
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}
Length = 305
Score = 92.0 bits (227), Expect = 3e-21
Identities = 62/302 (20%), Positives = 113/302 (37%), Gaps = 31/302 (10%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
P L+L +N IT + D +FK + NL L L NKI I F L L L L+ N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENIN--PMMYS 258
+ +L ++ L+ L + N+I ++ +F + ++ + + L++ +
Sbjct: 91 LKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 259 ILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKR 318
+ L Y+ + + + L L LDGN + S L L L
Sbjct: 148 GMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 319 NRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378
N ++ V + N +L EL ++ NKL ++ D ++ + + NNI
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH--KYIQVVYLHNNNISAIG---- 258
Query: 379 LDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQ--DIHNLLYQSNIKLTHL 436
+ P G ++L N +Q +I ++ +
Sbjct: 259 ---------------SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303
Query: 437 DL 438
L
Sbjct: 304 QL 305
Score = 90.1 bits (222), Expect = 1e-20
Identities = 56/266 (21%), Positives = 108/266 (40%), Gaps = 14/266 (5%)
Query: 117 QHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK 176
L + N+ I I F + +L L L +N I+ + F ++ L+ LYL N+
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 177 IESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN--PEIFK 234
++ +P + L +LRV N I+K+ +F L+++ ++L N + F+
Sbjct: 91 LKELPEKMPKTLQELRVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDG 294
+++L + + I + L L L N++ + A L+ L L L L
Sbjct: 148 GMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 295 NHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFD 354
N + S ++ L+ L L N+L KV + + + + N + + F
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA-DHKYIQVVYLHNNNISAIGSNDFC 263
Query: 355 PIE-----NSLRDLKISGNNIQLSDV 375
P S + + N +Q ++
Sbjct: 264 PPGYNTKKASYSGVSLFSNPVQYWEI 289
Score = 86.2 bits (212), Expect = 3e-19
Identities = 62/312 (19%), Positives = 113/312 (36%), Gaps = 40/312 (12%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
LR + + + + + L L NKI I F +L +L L L +N+I
Sbjct: 11 HLRVVQCSDLGLEKVPKDLPP---DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
SK++P F L KL+ L LS N + E+ ++ K +QEL+ + + +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKV-RKSVFNGLNQM 126
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
++ L + + + +KKL + + + I + S L L L N++
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS---LTELHLDGNKI 183
Query: 322 AKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDK 381
KV + L NL +L +S N + L
Sbjct: 184 TKVDAASLKGLNNLAKLGLS--------------------------FNSISAVDNGSLAN 217
Query: 382 LVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHN------LLYQSNIKLTH 435
L+ L + + +P GL ++Q + L NN+ I + +
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHK-YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276
Query: 436 LDLSRNKFKGFD 447
+ L N + ++
Sbjct: 277 VSLFSNPVQYWE 288
Score = 75.5 bits (184), Expect = 1e-15
Identities = 54/216 (25%), Positives = 89/216 (41%), Gaps = 9/216 (4%)
Query: 238 ELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHF 297
L+ +C GLE + + D LDL N++ + + ++LK L TL+L N
Sbjct: 11 HLRVVQCSDLGLEKVPK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI 67
Query: 298 PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
I +F+ KL+ L L +N+L ++ L EL + N++ ++ + F+ +
Sbjct: 68 SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQ---ELRVHENEITKVRKSVFNGLN 124
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
+ + + KL + IAD N T IP+GL P L L+L GN
Sbjct: 125 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGN 181
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIM 453
+ + + L L LS N D S
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217
Score = 66.2 bits (160), Expect = 1e-12
Identities = 54/316 (17%), Positives = 97/316 (30%), Gaps = 53/316 (16%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
LDL N I EI FK++++ L + + + A + L
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK---- 88
Query: 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130
N L P +EL + + I
Sbjct: 89 ----------------------------------NQLKELPEKMPKTL-QELRVHENEIT 113
Query: 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYN--FKGMMNLQELYLDFNKIESIPSSVFMHL 188
+ F G+ + + L N + S N F+GM L + + I +IP +
Sbjct: 114 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--- 170
Query: 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCG 248
L L L N+I+K+ L+ L L LS+N I ++ + L+ +
Sbjct: 171 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 230
Query: 249 LENINPMMYSILADLIYLDLGYNQLKYLLAD------ELEDLKKLETLLLDGNH--FPVI 300
L P + + + L N + + ++ + L N + I
Sbjct: 231 L-VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEI 289
Query: 301 LEKSFSSQFKLQVLCL 316
+F + + L
Sbjct: 290 QPSTFRCVYVRAAVQL 305
Score = 36.9 bits (84), Expect = 0.004
Identities = 20/71 (28%), Positives = 30/71 (42%)
Query: 385 LKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFK 444
L + + T+I G FK +L L L N + I + +KL L LS+N+ K
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92
Query: 445 GFDEKSYIMSE 455
EK +
Sbjct: 93 ELPEKMPKTLQ 103
Score = 29.6 bits (65), Expect = 0.76
Identities = 24/168 (14%), Positives = 51/168 (30%), Gaps = 33/168 (19%)
Query: 7 FMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDD 66
L L L N I +++ K + + L + + + + P++ E L++
Sbjct: 169 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN 228
Query: 67 RGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN 126
++V G +A+ I + L + + S N
Sbjct: 229 ---NKLVKVPGGLADHKYIQVVYLHNNNISAIGS-------------------------N 260
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNIT--SLLDYNFKGMMNLQELYL 172
F P S ++L N + + F+ + + L
Sbjct: 261 DFCP---PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 82.4 bits (202), Expect = 1e-17
Identities = 66/368 (17%), Positives = 125/368 (33%), Gaps = 54/368 (14%)
Query: 7 FMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDD 66
+++ L ++ S N + +I P +++ T L + + + +
Sbjct: 64 YLNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 118
Query: 67 RGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN 126
+ + ++ N + + + + L+ G + L L
Sbjct: 119 NNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178
Query: 127 SFIPAIGFHPFWGVPSL----RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPS 182
+ V + L T+N I+ + + NL EL L+ N+++ I +
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDIGT 236
Query: 183 SVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTF 242
L++L L LA+N+IS LAP L+KL L L N I I+P
Sbjct: 237 --LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLEL 292
Query: 243 KCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILE 302
+ S L +L YL L +N + + + L KL+ L N +
Sbjct: 293 NENQL----EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-- 344
Query: 303 KSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SL 360
++ NLTN+ L +N++ L P+ N +
Sbjct: 345 ------------------------SSLANLTNINWLSAGHNQISDLT-----PLANLTRI 375
Query: 361 RDLKISGN 368
L ++
Sbjct: 376 TQLGLNDQ 383
Score = 80.0 bits (196), Expect = 7e-17
Identities = 62/357 (17%), Positives = 120/357 (33%), Gaps = 37/357 (10%)
Query: 8 MSKLKSLDLSYNDIVEINP-----------------EIFKDIQDTTMLFQVTIFLYLLHS 50
+ ++ +L I I+ +++ T L + + +
Sbjct: 43 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 102
Query: 51 SASVMCPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIG 110
+ + + ++ N + + + + L+ G
Sbjct: 103 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG 162
Query: 111 PIFQQFQHLEELHITNSFIPAIGFHPFWGVPSL----RYLNLTHNNITSLLDYNFKGMMN 166
+ L L + V + L T+N I+ + + N
Sbjct: 163 NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI--LTN 220
Query: 167 LQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIV 226
L EL L+ N+++ I + L++L L LA+N+IS LAP L+KL L L N I
Sbjct: 221 LDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS 276
Query: 227 EINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKK 286
I+P + S L +L YL L +N + + + L K
Sbjct: 277 NISPLAGLTALTNLELNENQL----EDISPISNLKNLTYLTLYFNNISDIS--PVSSLTK 330
Query: 287 LETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYN 343
L+ L N + S ++ + L N+++ + T NLT + +L ++
Sbjct: 331 LQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDL--TPLANLTRITQLGLNDQ 383
Score = 65.4 bits (158), Expect = 3e-12
Identities = 64/379 (16%), Positives = 126/379 (33%), Gaps = 33/379 (8%)
Query: 81 NPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGV 140
PI Q+ T + + + + ++T + L I +I +
Sbjct: 8 QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI--DGVEYL 65
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
+L +N ++N +T + K + L ++ ++ N+I I + L
Sbjct: 66 NNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQIT 123
Query: 201 ISKLAPRLFL---------KLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLEN 251
L +S + +L + D++ L +
Sbjct: 124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183
Query: 252 INPMMY----SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSS 307
N + + L +L L NQ+ + + L+ L L+GN I + +S
Sbjct: 184 SNKVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLAS 239
Query: 308 QFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISG 367
L L L N+++ + + LT L EL + N++ + L L
Sbjct: 240 LTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNI------SPLAGLTALTNLE 291
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
N + + + L L L++ N +DI LQ L + N + D+ +L
Sbjct: 292 LNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDVSSLAN 349
Query: 428 QSNIKLTHLDLSRNKFKGF 446
+N + L N+
Sbjct: 350 LTN--INWLSAGHNQISDL 366
Score = 30.0 bits (66), Expect = 0.74
Identities = 51/254 (20%), Positives = 86/254 (33%), Gaps = 43/254 (16%)
Query: 212 LSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
L ++ +L I I+ G+E L +L ++ N
Sbjct: 43 LDQVTTLQADRLGIKSID------------------GVEY--------LNNLTQINFSNN 76
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPV-----ILEKSFSSQFKLQVLCLKRNRLAKVTT 326
QL + L++L KL +L++ N L +
Sbjct: 77 QLTDI--TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134
Query: 327 TAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLD------ 380
+N I + + L L+ SF L+ L +L N +
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194
Query: 381 KLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSR 440
KL L++L + +DI + +L L+L+GN L+DI L +N LT LDL+
Sbjct: 195 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGTLASLTN--LTDLDLAN 250
Query: 441 NKFKGFDEKSYIMS 454
N+ S +
Sbjct: 251 NQISNLAPLSGLTK 264
Score = 28.8 bits (63), Expect = 1.4
Identities = 17/106 (16%), Positives = 37/106 (34%), Gaps = 5/106 (4%)
Query: 355 PIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNL 414
+K ++D + L ++ L + I G+ + +L +N
Sbjct: 17 TDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-DGVEYL-NNLTQINF 73
Query: 415 SGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMSEPKNIH 460
S N L DI L ++ KL + ++ N+ + + +
Sbjct: 74 SNNQLTDITPL--KNLTKLVDILMNNNQIADITPLANLTNLTGLTL 117
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 76.0 bits (185), Expect = 5e-16
Identities = 48/278 (17%), Positives = 84/278 (30%), Gaps = 31/278 (11%)
Query: 169 ELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLK-SLDLSYNDIVE 227
++++P + + + + L NRIS + F L S
Sbjct: 15 TTSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71
Query: 228 INPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKL 287
+ + L +++P + L L L L L+ L L L
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAAL 131
Query: 288 ETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
+ L L N + + +F L L L NR++ V AF L +L L + N++
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
+ +F L +L L + N + +P
Sbjct: 192 VHPHAFRD--------------------------LGRLMTLYLFANNLSALPTEALAPLR 225
Query: 408 HLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445
LQ+L L+ N L S ++
Sbjct: 226 ALQYLRLNDNPWVCDCRARPLWA-WLQKFRGSSSEVPC 262
Score = 75.6 bits (184), Expect = 8e-16
Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 3/232 (1%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD-FNKIESIPSSVFMHLSDLRVLSLAHN 199
+ + + L N I+ + +F+ NL L+L ++ ++ +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
++ + P F L +L +L L + E+ P +F+ + L+ + L+ + +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L +L +L L N++ + L L+ LLL N + +F +L L L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
L+ + T A L L L ++ N P+ L+ + S + +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWV--CDCRARPLWAWLQKFRGSSSEVP 261
Score = 69.8 bits (169), Expect = 6e-14
Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 24/239 (10%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIG------QMDLGTEVLKIVPSEE------- 102
CP C C + + C + + +P+G ++ L + VP+
Sbjct: 2 CPGACVC--YNEPKVTTSCPQQGLQA-VPVGIPAASQRIFLHGNRISHVPAASFRACRNL 58
Query: 103 --------NPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNIT 154
+ + N+ + ++ F G+ L L+L +
Sbjct: 59 TILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118
Query: 155 SLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSK 214
L F+G+ LQ LYL N ++++P F L +L L L NRIS + R F L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQL 273
L L L N + ++P F+D+ L T + L + + L L YL L N
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Score = 67.9 bits (164), Expect = 3e-13
Identities = 54/275 (19%), Positives = 99/275 (36%), Gaps = 36/275 (13%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
+ + L N I + F+ ++ T+L+ + L + ++A + + L D +
Sbjct: 34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93
Query: 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130
V F L LH+ +
Sbjct: 94 RSVDP-----------------------------------ATFHGLGRLHTLHLDRCGLQ 118
Query: 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190
+G F G+ +L+YL L N + +L D F+ + NL L+L N+I S+P F L
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178
Query: 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLE 250
L L L NR++ + P F L +L +L L N++ + E ++ L+ +
Sbjct: 179 LDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW- 237
Query: 251 NINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+ + A L +++ L L
Sbjct: 238 VCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRD 272
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 63.8 bits (153), Expect = 5e-12
Identities = 28/213 (13%), Positives = 59/213 (27%), Gaps = 8/213 (3%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
L + I F D + + + + +
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEK--------IEISQNDVLEVIEADVFSNLPKL 80
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSF 128
+ + ++ P +L ++ + + + I + L ++ +
Sbjct: 81 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINI 140
Query: 129 IPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHL 188
L L N I + + F G + D N +E +P+ VF
Sbjct: 141 HTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGA 200
Query: 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221
S +L ++ RI L L KL++
Sbjct: 201 SGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233
Score = 46.8 bits (109), Expect = 2e-06
Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 11/232 (4%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR- 200
S R + +T + + N EL K+ I F DL + ++ N
Sbjct: 9 SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 201 ---ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
I KL +++ + + + ++
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 258 SILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLK 317
S+ L+ + N + + L L+ N I +F+ ++
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 318 RNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
N L ++ F + + LDIS ++ L + +L+ L+
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLE----NLKKLRARSTY 233
Score = 46.1 bits (107), Expect = 4e-06
Identities = 28/208 (13%), Positives = 62/208 (29%), Gaps = 4/208 (1%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK----IESIPSSVFMHLSDLRVLSL 196
+ L + + F G +L+++ + N IE+ S L ++R+
Sbjct: 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM 256
+ L + + + + +I + L +
Sbjct: 89 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148
Query: 257 YSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
+ + + L L N ++ + + E L D N+ + F +L +
Sbjct: 149 VGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDI 208
Query: 317 KRNRLAKVTTTAFTNLTNLIELDISYNK 344
R R+ + + NL L K
Sbjct: 209 SRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 38.0 bits (86), Expect = 0.001
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 393 MNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNK 442
N ++P +F L++S + + + ++ KL K
Sbjct: 187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
Score = 36.8 bits (83), Expect = 0.004
Identities = 35/213 (16%), Positives = 68/213 (31%), Gaps = 5/213 (2%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPV 299
+ F C+ + I + + I L +L+ + LE + + N
Sbjct: 11 RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67
Query: 300 IL--EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE 357
++ + + ++ K N L + AF NL NL L IS + L
Sbjct: 68 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGN 417
+ NI + + + + L + +I F + N
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187
Query: 418 NLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
NL+++ N ++ LD+SR +
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYG 220
Score = 33.3 bits (74), Expect = 0.041
Identities = 32/238 (13%), Positives = 69/238 (28%), Gaps = 7/238 (2%)
Query: 190 DLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD--IQELKTFKCRSC 247
RV ++++++ L L + I F E
Sbjct: 9 SNRVFLCQESKVTEIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65
Query: 248 GLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSS 307
+ ++ N L Y+ + ++L L+ LL+ + +
Sbjct: 66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125
Query: 308 QFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISG 367
+ +L ++ N + + + NK E+ + L +L +S
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL 425
NN +V L I+ +P + L+ + NL+ + L
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPTL 241
Score = 32.2 bits (71), Expect = 0.11
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSL 156
+F L I+ + I ++ + + LR + N+ L
Sbjct: 196 VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKL 238
Score = 29.9 bits (65), Expect = 0.68
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQ 33
S LD+S I + ++++
Sbjct: 200 ASGPVILDISRTRIHSLPSYGLENLK 225
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of
glycoprotein Ib alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 266
Score = 60.5 bits (145), Expect = 7e-11
Identities = 43/207 (20%), Positives = 73/207 (35%), Gaps = 7/207 (3%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHN 199
V S +N N+T+L K + L+L N + + + M + L L+L
Sbjct: 9 VASHLEVNCDKRNLTALPPDLPK---DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 200 RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSI 259
++KL L + ++ ++ P + + + L L ++
Sbjct: 66 ELTKLQVDGTLPVLGTLD---LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
L +L L L N+LK L L KLE L L N+ + + L L L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLD 346
L + F L + N
Sbjct: 183 SLYTIPKGFF-GSHLLPFAFLHGNPWL 208
Score = 58.2 bits (139), Expect = 4e-10
Identities = 39/211 (18%), Positives = 61/211 (28%), Gaps = 9/211 (4%)
Query: 233 FKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
+ C L + P + D L L N L L +L L L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 293 DGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVAS 352
D L VL ++ + T + + +
Sbjct: 63 DRAELTK-----LQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117
Query: 353 FDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFL 412
N + +L KL+ LS+A+ N T++P GL +L L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 413 NLSGNNLQDIHNLLYQSNIKLTHLDLSRNKF 443
L N+L I + S+ L L N +
Sbjct: 178 LLQENSLYTIPKGFFGSH-LLPFAFLHGNPW 207
Score = 50.5 bits (119), Expect = 1e-07
Identities = 33/189 (17%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 11 LKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRGRY 70
L LS N + + L L+ + + + L G
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTR----------LTQLNLDRAELTKLQVDGTLPVLGTL 82
Query: 71 EIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIP 130
++ + + L + P + L+EL++ + +
Sbjct: 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-----ALRGLGELQELYLKGNELK 137
Query: 131 AIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSD 190
+ P L L+L +NN+T L G+ NL L L N + +IP F
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF-GSHL 196
Query: 191 LRVLSLAHN 199
L L N
Sbjct: 197 LPFAFLHGN 205
Score = 48.2 bits (113), Expect = 8e-07
Identities = 34/184 (18%), Positives = 61/184 (33%), Gaps = 8/184 (4%)
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+ LH++ + + L LNL + L L
Sbjct: 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-----LTKLQVDGTLPVLGTLDL 84
Query: 176 KIESI--PSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIF 233
+ + L L VL ++ NR++ L L +L+ L L N++ + P +
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 234 KDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293
+L+ + L + + + L +L L L N L Y + L L
Sbjct: 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL-YTIPKGFFGSHLLPFAFLH 203
Query: 294 GNHF 297
GN +
Sbjct: 204 GNPW 207
Score = 27.0 bits (58), Expect = 4.8
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Query: 409 LQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKS 450
+N NL + L + T L LS N F +
Sbjct: 12 HLEVNCDKRNLTALPPDLPKD---TTILHLSENLLYTFSLAT 50
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia
pestis [TaxId: 632]}
Length = 353
Score = 58.3 bits (139), Expect = 7e-10
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
F L + PSL LN+++N + L L+ L
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIA 311
Query: 173 DFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLK 216
FN + +P +L+ L + +N + + P + + L+
Sbjct: 312 SFNHLAEVPEL----PQNLKQLHVEYNPLREF-PDIPESVEDLR 350
Score = 57.9 bits (138), Expect = 9e-10
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 9/107 (8%)
Query: 134 FHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRV 193
+ F G+ L N ++ + +L+EL + NK+ +P+ L
Sbjct: 253 ENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLER 308
Query: 194 LSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELK 240
L + N ++++ P L LK L + YN + E P+I + +++L+
Sbjct: 309 LIASFNHLAEV-PEL---PQNLKQLHVEYNPLREF-PDIPESVEDLR 350
Score = 48.7 bits (114), Expect = 7e-07
Identities = 45/302 (14%), Positives = 85/302 (28%), Gaps = 34/302 (11%)
Query: 9 SKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDRG 68
L+SL S N + E+ PE+ + ++ + L L + +
Sbjct: 58 PHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPEL 116
Query: 69 RYEIVCRRGDMANPIPIGQMDLGTEVLKIV---------------PSEENPNHLTIGPIF 113
+ + D+ N DL + I P
Sbjct: 117 QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK 176
Query: 114 QQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLD 173
L I +P L + +N + +L D
Sbjct: 177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 236
Query: 174 FNKIESIPSSVFMHLSDLR--------VLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ E S F+ +S+ N S L L+ L++S N +
Sbjct: 237 TDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 296
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL--LADELED 283
+E+ + L+ L + + + L L + YN L+ + + +ED
Sbjct: 297 IELPALPPR----LERLIASFNHLAEVPELPQN----LKQLHVEYNPLREFPDIPESVED 348
Query: 284 LK 285
L+
Sbjct: 349 LR 350
Score = 43.7 bits (101), Expect = 4e-05
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 368 NNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLY 427
N ++++++ D L+ L++++ ++P P L+ L S N+L ++ L
Sbjct: 269 LNASSNEIRSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQ 324
Query: 428 QSNIKLTHLDLSRNKFKGFDE 448
L L + N + F +
Sbjct: 325 ----NLKQLHVEYNPLREFPD 341
Score = 39.8 bits (91), Expect = 5e-04
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
L L + ++SL + +L+ L N + +P L+ L + +N +
Sbjct: 39 QAHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNL 90
Query: 202 SKL 204
L
Sbjct: 91 KAL 93
Score = 38.3 bits (87), Expect = 0.002
Identities = 13/81 (16%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
SL +L +S N + + +L+ L + + ++P+ +L+ L++ N
Sbjct: 285 SLEELNVSNNKL-----IELPALPPRLERLIASFNHLAEVPELP----QNLKQLHVEYNP 335
Query: 419 LQDIHNLLYQSNIKLTHLDLS 439
L++ ++ + L ++
Sbjct: 336 LREFPDIPE----SVEDLRMN 352
Score = 34.8 bits (78), Expect = 0.020
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
Query: 189 SDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCG 248
L L + +S L P L L+SL S N + E+ PE+ + ++ L
Sbjct: 38 RQAHELELNNLGLSSL-PEL---PPHLESLVASCNSLTEL-PELPQSLKSLLVDNNNLKA 92
Query: 249 LENINPMMY 257
L ++ P++
Sbjct: 93 LSDLPPLLE 101
Score = 32.1 bits (71), Expect = 0.13
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 351 ASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQ 410
++ E + + +S +++ LD+ + L + ++ + +P+ PHL+
Sbjct: 8 NAWSEWERNAPPGNGEQREMAVSRLRDCLDR--QAHELELNNLGLSSLPELP----PHLE 61
Query: 411 FLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446
L S N+L ++ L L L + N K
Sbjct: 62 SLVASCNSLTELPELPQS----LKSLLVDNNNLKAL 93
Score = 31.7 bits (70), Expect = 0.20
Identities = 9/44 (20%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 405 MNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
++ L L+ L + L L L S N E
Sbjct: 36 LDRQAHELELNNLGLSSLPELPPH----LESLVASCNSLTELPE 75
Score = 30.2 bits (66), Expect = 0.54
Identities = 10/42 (23%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 140 VPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIP 181
P L L + N++T L + +L+ L +D N ++++
Sbjct: 57 PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALS 94
Score = 27.5 bits (59), Expect = 4.0
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 310 KLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNN 369
+ L L L+ + +L L S N L L + SL+ L + NN
Sbjct: 39 QAHELELNNLGLSSLPE----LPPHLESLVASCNSLTEL-----PELPQSLKSLLVDNNN 89
Query: 370 IQ 371
++
Sbjct: 90 LK 91
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase
alpha-subunit, C-terminal domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 50.5 bits (120), Expect = 2e-08
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 192 RVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLEN 251
RVL LAH ++ L +L + LDLS+N + + P + ++ L+ + LEN
Sbjct: 1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAA-LRCLEVLQASDNALEN 57
Query: 252 INPMMYSILADLIYLDLGYNQLKYL-LADELEDLKKLETLLLDGNHF 297
++ + L L L N+L+ L +L L L GN
Sbjct: 58 VDGVANLP--RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
Score = 47.0 bits (111), Expect = 4e-07
Identities = 21/111 (18%), Positives = 46/111 (41%), Gaps = 24/111 (21%)
Query: 144 RYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF------------------ 185
R L+L H ++T L + + ++ + L L N++ ++P ++
Sbjct: 1 RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 186 ---MHLSDLRVLSLAHNRISKL-APRLFLKLSKLKSLDLSYNDIVEINPEI 232
+L L+ L L +NR+ + A + + +L L+L N + +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 109
Score = 43.2 bits (101), Expect = 7e-06
Identities = 22/118 (18%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGM 164
LT+ +Q + L ++++ + A+ + L L + N + ++ +
Sbjct: 8 KDLTVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVDGVAN--L 64
Query: 165 MNLQELYLDFNKIESIPS-SVFMHLSDLRVLSLAHNRISKLA---PRLFLKLSKLKSL 218
LQEL L N+++ + + L +L+L N + + RL L + S+
Sbjct: 65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122
Score = 37.8 bits (87), Expect = 5e-04
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 312 QVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQ 371
+VL L L + L + LD+S+N+L + P +LR L++ +
Sbjct: 1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-----ALPPALAALRCLEVLQASDN 53
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPK-GLFKMNPHLQFLNLSGNNLQDIHNL 425
+ + + L +L+ L + + P L LNL GN+L +
Sbjct: 54 ALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108
Score = 36.6 bits (84), Expect = 0.001
Identities = 24/112 (21%), Positives = 42/112 (37%), Gaps = 8/112 (7%)
Query: 338 LDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTD 397
L +++ L L + + + L +S N +L + L L L+ L +D +
Sbjct: 3 LHLAHKDLTVLC--HLEQLLL-VTHLDLSHN--RLRALPPALAALRCLEVLQASDNALEN 57
Query: 398 IPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNI-KLTHLDLSRNKFKGFDE 448
+ P LQ L L N LQ + + +L L+L N +
Sbjct: 58 VDG--VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107
Score = 31.2 bits (70), Expect = 0.11
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 410 QFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDE 448
+ L+L+ +L + +L + + +THLDLS N+ +
Sbjct: 1 RVLHLAHKDLTVLCHL--EQLLLVTHLDLSHNRLRALPP 37
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 47.5 bits (112), Expect = 4e-07
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 10/124 (8%)
Query: 105 NHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNIT--SLLDYNFK 162
L P L+ +S + +P L LNL++N + + +
Sbjct: 30 KGLRSDPDLVAQNIDVVLNRRSSMAATLRII-EENIPELLSLNLSNNRLYRLDDMSSIVQ 88
Query: 163 GMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP-------RLFLKLSKL 215
NL+ L L N+++S + L L L N +S + + KL
Sbjct: 89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKL 148
Query: 216 KSLD 219
LD
Sbjct: 149 LRLD 152
Score = 39.4 bits (91), Expect = 2e-04
Identities = 28/156 (17%), Positives = 52/156 (33%), Gaps = 11/156 (7%)
Query: 147 NLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAP 206
L + L + + LD + S P + + VL+ + + L
Sbjct: 3 ELKPEQVEQL-KLIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATL-R 58
Query: 207 RLFLKLSKLKSLDLSYNDI--VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLI 264
+ + +L SL+LS N + ++ I + LK L++ + L
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 265 YLDLGYNQLKYLLADELEDLKKLETLL-----LDGN 295
L L N L D+ + + LDG+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGH 154
Score = 38.3 bits (88), Expect = 7e-04
Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 3/99 (3%)
Query: 143 LRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIP--SSVFMHLSDLRVLSLAHNR 200
LN +++ + L + + L L L N++ + SS+ +L++L+L+ N
Sbjct: 44 DVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE 102
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+ +K KL+ L L N + + + I +
Sbjct: 103 LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141
Score = 35.9 bits (82), Expect = 0.004
Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 5/124 (4%)
Query: 301 LEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSL 360
L+ S ++ L L + L+ + L + + L
Sbjct: 12 LKLIMSKRYDGSQQALDLKGLRSDPD--LVAQNIDVVLNRRSSMAATLRIIEENI--PEL 67
Query: 361 RDLKISGNNIQ-LSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNL 419
L +S N + L D+ +++ K LK L+++ + L+ L L GN+L
Sbjct: 68 LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127
Query: 420 QDIH 423
D
Sbjct: 128 SDTF 131
Score = 35.2 bits (80), Expect = 0.006
Identities = 22/138 (15%), Positives = 50/138 (36%), Gaps = 10/138 (7%)
Query: 141 PSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNR 200
S + L+L D + L + ++ + ++ +L L+L++NR
Sbjct: 22 GSQQALDLKGLRS----DPDLVAQNIDVVLNRRSSMAATLRI-IEENIPELLSLNLSNNR 76
Query: 201 ISKLA--PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYS 258
+ +L + K LK L+LS N++ +L+ L + +
Sbjct: 77 LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST 136
Query: 259 ILADLIYLDLGYNQLKYL 276
++ + + +L L
Sbjct: 137 YISAIRER---FPKLLRL 151
Score = 30.6 bits (68), Expect = 0.26
Identities = 30/158 (18%), Positives = 57/158 (36%), Gaps = 8/158 (5%)
Query: 196 LAHNRISKLAPRLF-LKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINP 254
L ++ +L + ++LDL + RS +
Sbjct: 4 LKPEQVEQLKLIMSKRYDGSQQALDLKGLR----SDPDLVAQNIDVVLNRRSSMAATL-R 58
Query: 255 MMYSILADLIYLDLGYNQLKYL--LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQ 312
++ + +L+ L+L N+L L ++ ++ L+ L L GN E KL+
Sbjct: 59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLE 118
Query: 313 VLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEV 350
L L N L+ T ++ + E +LD E+
Sbjct: 119 ELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHEL 156
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 460
Score = 49.2 bits (115), Expect = 8e-07
Identities = 22/133 (16%), Positives = 40/133 (30%), Gaps = 26/133 (19%)
Query: 334 NLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADM 393
++ LDI +L A P+ + +++ + + K++ L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL----------- 51
Query: 394 NYTDIPKGLFKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKFKGFDE 448
++NP L LNL N L D + L + K+ L L G
Sbjct: 52 ----------RVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 101
Query: 449 KSYIMSEPKNIHK 461
+
Sbjct: 102 GVLSSTLRTLPTL 114
Score = 46.9 bits (109), Expect = 4e-06
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 160 NFKGMMNLQELYLDFNKIESIP----SSVFMHLSDLRVLSLAHNRIS-----KLAPRLFL 210
+ L+ L+L + ++ + LR L L++N + +L +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 211 KLSKLKSLDLSYNDIVEINPEIFKDIQELK 240
L+ L L E + + +++ K
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453
Score = 45.7 bits (106), Expect = 9e-06
Identities = 15/126 (11%), Positives = 33/126 (26%), Gaps = 10/126 (7%)
Query: 142 SLRYLNLTHNNITSL-LDYNFKGMMNLQELYLDFNKIESIP----SSVFMHLSDLRVLSL 196
++ L++ ++ + Q + LD + SS L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 197 AHNRIS-----KLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLEN 251
N + + L K++ L L + + +N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 252 INPMMY 257
+
Sbjct: 123 LLGDAG 128
Score = 45.7 bits (106), Expect = 9e-06
Identities = 13/98 (13%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 165 MNLQELYLDFNKI-ESIPSSVFMHLSDLRVLSLAHNRIS----KLAPRLFLKLSKLKSLD 219
+++Q L + ++ ++ + + L +V+ L ++ K L L+
Sbjct: 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61
Query: 220 LSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
L N++ ++ + + K + L+N
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGA 99
Score = 39.6 bits (90), Expect = 7e-04
Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 23/132 (17%)
Query: 159 YNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA----PRLFLKLSK 214
F + + L+ + + + S LRVL LA +S + L
Sbjct: 339 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS 398
Query: 215 LKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLK 274
L+ LDLS N + + +++ + C LE L L
Sbjct: 399 LRELDLSNNCL---GDAGILQL--VESVRQPGCLLEQ--------------LVLYDIYWS 439
Query: 275 YLLADELEDLKK 286
+ D L+ L+K
Sbjct: 440 EEMEDRLQALEK 451
Score = 36.1 bits (81), Expect = 0.008
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD-----IHNLLYQSNIKLTHLDLSRNKF 443
++D + + + L N L+ L+LS N L D + + Q L L L +
Sbjct: 380 DVSDSSCSSLAATL-LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438
Score = 35.3 bits (79), Expect = 0.014
Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 9/90 (10%)
Query: 305 FSSQFKLQVLCLKRNRL----AKVTTTAFTNLTNLIELDISYNKLDRLEVASF-DPIENS 359
L+VL L + +L ELD+S N L + + +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 360 ---LRDLKISGNNIQLSDVKNVLDKLVKLK 386
L L + ++++ L L K K
Sbjct: 425 GCLLEQLVLYDIYWS-EEMEDRLQALEKDK 453
Score = 34.2 bits (76), Expect = 0.033
Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 21/85 (24%)
Query: 262 DLIYLDLGYNQLKYL-LADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNR 320
D+ LD+ +L A+ L L++ + + LD K SS
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS------------- 49
Query: 321 LAKVTTTAFTNLTNLIELDISYNKL 345
A L EL++ N+L
Sbjct: 50 -------ALRVNPALAELNLRSNEL 67
Score = 34.2 bits (76), Expect = 0.035
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNL----LYQSNIKLTHLDLSRNKF 443
D ++ +GL + L+ L L+ ++ D +N L LDLS N
Sbjct: 354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 409
Score = 33.8 bits (75), Expect = 0.042
Identities = 10/73 (13%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 358 NSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDI--------PKGLFKMNPHL 409
+ LR L ++ ++ S ++ L+ +L D++ + + + + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 410 QFLNLSGNNLQDI 422
+ L L +
Sbjct: 429 EQLVLYDIYWSEE 441
Score = 33.8 bits (75), Expect = 0.052
Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 13/96 (13%)
Query: 113 FQQFQHLEELHITNSFIPAIGFHPFWGV----PSLRYLNLTHNNIT-----SLLDYNFKG 163
Q L L + + + SLR L+L++N + L++ +
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424
Query: 164 MMNLQELYLDFNKIESIPSSVFMHLS----DLRVLS 195
L++L L L LRV+S
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
Score = 29.9 bits (65), Expect = 0.73
Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 112 IFQQFQHLEELHITNSFIPAIGFHPFWGV----PSLRYLNLTHNNIT-----SLLDYNFK 162
+ Q + + + + + P+L LNL N + +L
Sbjct: 22 LLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 81
Query: 163 GMMNLQELYLDFNKIESIPSSVFMH 187
+Q+L L + V
Sbjct: 82 PSCKIQKLSLQNCCLTGAGCGVLSS 106
Score = 29.9 bits (65), Expect = 0.77
Identities = 45/419 (10%), Positives = 107/419 (25%), Gaps = 21/419 (5%)
Query: 5 LIFMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECAL 64
L L L+L N++ ++ T + L + +
Sbjct: 51 LRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRT 110
Query: 65 DDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHI 124
+ + + + L ++ + L+ L
Sbjct: 111 LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPD 170
Query: 125 TNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSV 184
+ GV L L G+ + L
Sbjct: 171 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 230
Query: 185 FMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKC 244
S+ +A L L + I + D+ + K
Sbjct: 231 LALGSN-------KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 283
Query: 245 RSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKS 304
L + A L+ L + + +
Sbjct: 284 SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLA---QNR 340
Query: 305 FSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR---LEVASFDPIENSLR 361
F + ++ L+ + ++ + L L ++ + +A+ +SLR
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400
Query: 362 DLKISGNNIQLSDVKNVLDKLV----KLKALSIADMNYTDIP----KGLFKMNPHLQFL 412
+L +S N + + + +++ + L+ L + D+ +++ + L K P L+ +
Sbjct: 401 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes
[TaxId: 1639]}
Length = 227
Score = 47.3 bits (111), Expect = 1e-06
Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 8/193 (4%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+ + +L + I E + + + L + L ++ E + +
Sbjct: 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEE--NPNHLTIGPIFQQFQHLEELHIT 125
+ + L + + + + I I +++
Sbjct: 98 KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLS 157
Query: 126 NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVF 185
P + L L N I+ + + NL E++L N+I +
Sbjct: 158 IGNAQVSDLTPLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--L 213
Query: 186 MHLSDLRVLSLAH 198
+ S+L +++L +
Sbjct: 214 ANTSNLFIVTLTN 226
Score = 44.3 bits (103), Expect = 1e-05
Identities = 34/223 (15%), Positives = 73/223 (32%), Gaps = 23/223 (10%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
+ +N+T + + + L + +I +L++L L L N+I+ LA
Sbjct: 24 IAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLA 79
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIY 265
P L L + V + T + +L +
Sbjct: 80 PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 266 LDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVT 325
+ L L + + V ++ KL L N+++ ++
Sbjct: 140 QITNISPLAGLTNLQYLS----------IGNAQVSDLTPLANLSKLTTLKADDNKISDIS 189
Query: 326 TTAFTNLTNLIELDISYNKLDRLEVASFDPIEN--SLRDLKIS 366
+L NLIE+ + N++ + P+ N +L + ++
Sbjct: 190 --PLASLPNLIEVHLKNNQI-----SDVSPLANTSNLFIVTLT 225
Score = 38.5 bits (88), Expect = 0.001
Identities = 20/170 (11%), Positives = 49/170 (28%), Gaps = 6/170 (3%)
Query: 5 LIFMSKLKSLDLSYNDI--VEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCEC 62
+ +++ L L+L N I + + K + + + +
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118
Query: 63 ALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEEL 122
D + + + I + + + ++ L L
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178
Query: 123 HITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
++ I P +P+L ++L +N I+ + NL + L
Sbjct: 179 KADDNKI--SDISPLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTL 224
Score = 36.2 bits (82), Expect = 0.005
Identities = 38/228 (16%), Positives = 71/228 (31%), Gaps = 20/228 (8%)
Query: 212 LSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYN 271
L+ + +++ + + D+ + T G+ I + Y L +LI L+L N
Sbjct: 18 LANAIKIAAGKSNVTDTVTQ--ADLDGITTLSAFGTGVTTIEGVQY--LNNLIGLELKDN 73
Query: 272 QLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTN 331
Q+ L + L + + S + + +
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 332 LTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIA 391
L + + + L L +L+ L L KL L
Sbjct: 134 LYLDLNQITNISPLAGL------------TNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181
Query: 392 DMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
D +DI P+L ++L N + D+ L SN L + L+
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVSPLANTSN--LFIVTLT 225
Score = 33.9 bits (76), Expect = 0.028
Identities = 34/229 (14%), Positives = 71/229 (31%), Gaps = 24/229 (10%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
N ++ + + + L + LS ++ + L+ L L+L N I
Sbjct: 20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQI 75
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
++ P + + SI + + L+ L
Sbjct: 76 TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
+ + + + + S QV T NL+ L L NK+
Sbjct: 136 LDLNQITNISPLAGLTNLQYLSIGNAQVSD----------LTPLANLSKLTTLKADDNKI 185
Query: 346 DRLEVASFDPIEN--SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIAD 392
+ P+ + +L ++ + N Q+SDV L L +++ +
Sbjct: 186 SDIS-----PLASLPNLIEVHLKNN--QISDVSP-LANTSNLFIVTLTN 226
Score = 30.0 bits (66), Expect = 0.57
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
L ++ N TD + L+ G + I + Y +N L L+L
Sbjct: 16 PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYLNN--LIGLELK 71
Query: 440 RNKFKGFDEKSYIMSEPKNIH 460
N+ + +
Sbjct: 72 DNQITDLAPLKNLTKITELEL 92
Score = 29.6 bits (65), Expect = 0.70
Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 18/201 (8%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
LA+ I + G + + + DL + TL G I + L L LK N
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIE--------NSLRDLKISGNNIQ 371
++ + +EL + K + L N
Sbjct: 74 QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGL----FKMNPHLQFLNLSGNNLQDIHNLLY 427
L N + + L L+ + L L N + DI L
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLAS 193
Query: 428 QSNIKLTHLDLSRNKFKGFDE 448
N L + L N+
Sbjct: 194 LPN--LIEVHLKNNQISDVSP 212
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 162
Score = 44.9 bits (105), Expect = 3e-06
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 5/102 (4%)
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFK 234
IE + + R L L +I + L L + ++D S N+I +++ F
Sbjct: 6 ELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FP 60
Query: 235 DIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYL 276
++ LKT + + I + L DL L L N L L
Sbjct: 61 LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 102
Score = 42.6 bits (99), Expect = 2e-05
Identities = 33/150 (22%), Positives = 58/150 (38%), Gaps = 7/150 (4%)
Query: 148 LTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPR 207
LT I + + +EL L KI I ++ L + + N I KL
Sbjct: 3 LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKLDG- 58
Query: 208 LFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMM-YSILADLIYL 266
F L +LK+L ++ N I I + + + +L + L + + + L L YL
Sbjct: 59 -FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL 117
Query: 267 DLGYNQLKYLLADELEDLKKLETL-LLDGN 295
+ N + L + K+ + +LD
Sbjct: 118 CILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147
Score = 40.7 bits (94), Expect = 9e-05
Identities = 25/135 (18%), Positives = 48/135 (35%), Gaps = 7/135 (5%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSL 196
+ R L+L I ++ + + N+I + F L L+ L +
Sbjct: 14 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDG--FPLLRRLKTLLV 70
Query: 197 AHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN----PEIFKDIQELKTFKCRSCGLENI 252
+NRI ++ L L L L L+ N +VE+ K + L + ++
Sbjct: 71 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHY 130
Query: 253 NPMMYSILADLIYLD 267
+ + + LD
Sbjct: 131 RLYVIYKVPQVRVLD 145
Score = 36.1 bits (82), Expect = 0.003
Identities = 26/107 (24%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 329 FTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKAL 388
+TN ELD+ K+ +E + + + S N I+ D L +LK L
Sbjct: 14 YTNAVRDRELDLRGYKIPVIE--NLGATLDQFDAIDFSDNEIRKLDGFP---LLRRLKTL 68
Query: 389 SIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTH 435
+ + I +GL + P L L L+ N+L ++ +L +++K
Sbjct: 69 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 115
Score = 33.0 bits (74), Expect = 0.041
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 403 FKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGFDEKSYIMS 454
+ + L+L G + I NL + + +D S N+ + D +
Sbjct: 14 YTNAVRDRELDLRGYKIPVIENLG-ATLDQFDAIDFSDNEIRKLDGFPLLRR 64
Score = 31.4 bits (70), Expect = 0.13
Identities = 7/46 (15%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 304 SFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLE 349
+++ + + L L+ ++ + L +D S N++ +L+
Sbjct: 13 QYTNAVRDRELDLRGYKIPVIENL-GATLDQFDAIDFSDNEIRKLD 57
Score = 26.1 bits (56), Expect = 8.0
Identities = 18/140 (12%), Positives = 36/140 (25%), Gaps = 11/140 (7%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDDR 67
+ + LDL I I + + + S + + L
Sbjct: 17 AVRDRELDLRGYKIPVI-ENLGATLDQ----------FDAIDFSDNEIRKLDGFPLLRRL 65
Query: 68 GRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNS 127
+ R + TE++ S L + +L L +
Sbjct: 66 KTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 125
Query: 128 FIPAIGFHPFWGVPSLRYLN 147
+ + VP +R L+
Sbjct: 126 NKKHYRLYVIYKVPQVRVLD 145
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 192
Score = 45.2 bits (105), Expect = 4e-06
Identities = 43/195 (22%), Positives = 76/195 (38%), Gaps = 14/195 (7%)
Query: 56 CPYMCECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQ 115
CP MC C + C + IP + +++ ++ ++ +F +
Sbjct: 2 CPAMCHCEGT-----TVDCTGRGLKE-IPRD---IPLHTTELLLNDNELGRISSDGLFGR 52
Query: 116 FQHLEELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
HL +L + + + I + F G ++ L L N I + + F G+ L+ L L N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKD 235
+I + F HL+ L L+LA N + + L+ L+ P +D
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGAARCGAPSKVRD 171
Query: 236 IQEL----KTFKCRS 246
+Q FKC S
Sbjct: 172 VQIKDLPHSEFKCSS 186
Score = 32.9 bits (73), Expect = 0.052
Identities = 40/181 (22%), Positives = 68/181 (37%), Gaps = 10/181 (5%)
Query: 240 KTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKK-LETLLLDGNHFP 298
T C GL+ I I L L N+L + +D L L L L N
Sbjct: 11 TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67
Query: 299 VILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIEN 358
I +F +Q L L N++ +++ F L L L++ N++ + SF+ + N
Sbjct: 68 GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-N 126
Query: 359 SLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN 418
SL L ++ N + + ++ K+L N G +Q +L +
Sbjct: 127 SLTSLNLASNPFNCNCHLAWFAEWLRKKSL-----NGGAARCGAPSKVRDVQIKDLPHSE 181
Query: 419 L 419
Sbjct: 182 F 182
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 284
Score = 45.9 bits (107), Expect = 5e-06
Identities = 38/241 (15%), Positives = 85/241 (35%), Gaps = 13/241 (5%)
Query: 191 LRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEIN-PEIFKDIQELKTFKCRSCGL 249
+ + + + F +++ +DLS + I I +L+ L
Sbjct: 25 VIAFRCPRSFMDQPLAEHF-SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 250 ENINPMMYSILADLIYLDLGYNQLKYLLADE--------LEDLKKLETLLLDGNHFPVIL 301
+ + ++L+ L+L A + L++L H V +
Sbjct: 84 SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV 143
Query: 302 EKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLR 361
+ +L + ++N +T NL+ LD+S + + + + N L+
Sbjct: 144 AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 203
Query: 362 DLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQD 421
L +S + + L ++ LK L + + + L + PHLQ ++ ++
Sbjct: 204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ---INCSHFTT 260
Query: 422 I 422
I
Sbjct: 261 I 261
Score = 31.2 bits (69), Expect = 0.23
Identities = 40/250 (16%), Positives = 79/250 (31%), Gaps = 13/250 (5%)
Query: 90 LGTEVLKIVPSEENPNHLTIGPIFQQFQ--HLEELHITNSFIPAIGFHPFWG-VPSLRYL 146
G + + V + P P+ + F ++ + ++NS I H L+ L
Sbjct: 17 TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76
Query: 147 NLTHNNITSLLDYNFKGMMNLQELYLDF--NKIESIPSSVFMHLSDLRVLSLAHNR---- 200
+L ++ + NL L L E ++ S L L+L+
Sbjct: 77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136
Query: 201 --ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMY- 257
+ + +++L N + + L + +
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196
Query: 258 SILADLIYLDLGY-NQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCL 316
L L +L L + EL ++ L+TL + G L+ + LQ+ C
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCS 256
Query: 317 KRNRLAKVTT 326
+A+ T
Sbjct: 257 HFTTIARPTI 266
Score = 28.9 bits (63), Expect = 1.2
Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 8/137 (5%)
Query: 289 TLLLDGNHF-PVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDR 347
TL L G + P + + S + R+ + + F+ + +D+S + ++
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQG--VIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60
Query: 348 LEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLKALSIADMNYTDIPKGLFKMNP 407
+ + L++L + G + +++ L K L +++
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLS----DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTL 116
Query: 408 HLQFLNLSGNNLQDIHN 424
L NL +
Sbjct: 117 LSSCSRLDELNLSWCFD 133
Score = 28.1 bits (61), Expect = 2.1
Identities = 31/246 (12%), Positives = 57/246 (23%), Gaps = 8/246 (3%)
Query: 3 FTLIFMSKLKSLDLSYNDIVEIN-PEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCE 61
+++ +DLS + I I L + L + +
Sbjct: 40 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR 99
Query: 62 CALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEE 121
+ ++D +E++ Q
Sbjct: 100 L---NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 156
Query: 122 LHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDF-NKIESI 180
+ N + + + + F + LQ L L I
Sbjct: 157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 216
Query: 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIF-KDIQEL 239
+ L+ L + L L L+ + I P I K QE+
Sbjct: 217 TLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTTI--ARPTIGNKKNQEI 274
Query: 240 KTFKCR 245
KCR
Sbjct: 275 WGIKCR 280
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP
{Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}
Length = 313
Score = 43.2 bits (100), Expect = 4e-05
Identities = 40/240 (16%), Positives = 66/240 (27%), Gaps = 3/240 (1%)
Query: 107 LTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVPS-LRYLNLTHNNITSLLDYNFKGMM 165
I +L L+I P + L YL +TH N++ + +
Sbjct: 66 YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
L L +N + L +L ++ NRIS P + SKL + +
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+ F S + + + ++ K
Sbjct: 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSK 244
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
L L L N L + + L L + N L NL + NK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQGGNLQRFDVSAYANNKC 303
Score = 42.0 bits (97), Expect = 1e-04
Identities = 38/256 (14%), Positives = 72/256 (28%), Gaps = 8/256 (3%)
Query: 118 HLEELHITNSFIPAIGFHP--FWGVPSLRYLNLTHN-NITSLLDYNFKGMMNLQELYLDF 174
+ L ++ +P P +P L +L + N+ + + L LY+
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 175 NKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIV-EINPEIF 233
+ + L L ++N +S P L L + N I I
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 234 KDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLD 293
+ + L P ++ L D + L
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 294 GNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASF 353
+ + + S L+ NR+ T L L L++S+N L E+
Sbjct: 231 NSLAFDLGKVGLSKNLNGL--DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-EIPQG 287
Query: 354 DPIENSLRDLKISGNN 369
++ + N
Sbjct: 288 GNLQR-FDVSAYANNK 302
Score = 37.4 bits (85), Expect = 0.002
Identities = 31/237 (13%), Positives = 62/237 (26%), Gaps = 14/237 (5%)
Query: 10 KLKSLDLSYNDI---VEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDD 66
++ +LDLS ++ I + + L A + +
Sbjct: 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 67 RGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTI---------GPIFQQFQ 117
+ + + PS + +L G I +
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170
Query: 118 HLEELHITNSFIPA--IGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFN 175
+L + + G P N+ G +
Sbjct: 171 SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230
Query: 176 KIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEI 232
+ +L L L +NRI P+ +L L SL++S+N++ P+
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287
Score = 36.3 bits (82), Expect = 0.007
Identities = 53/262 (20%), Positives = 81/262 (30%), Gaps = 19/262 (7%)
Query: 191 LRVLSLAHNRISKLA--PRLFLKLSKLKSLDLSYND-IVEINPEIFKDIQELKTFKCRSC 247
+ L L+ + K P L L L + + +V P + +L
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 248 GLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSS 307
+ P S + L+ LD YN L L + L L + DGN + S+ S
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 308 QFKLQV-LCLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKIS 366
KL + + RNRL F NL V L +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 367 GNNIQLSDVKNVLDKLVKLKALSIADMNYTD-IPKGLFKMNPHLQFLNLSGNNLQ----D 421
L V + + + +P+GL ++ L LN+S NNL
Sbjct: 232 SLAFDLGKVGLSKNLNGLD----LRNNRIYGTLPQGLTQL-KFLHSLNVSFNNLCGEIPQ 286
Query: 422 IHNLLYQSNIKLTHLDLSRNKF 443
NL + + NK
Sbjct: 287 GGNLQ-----RFDVSAYANNKC 303
Score = 31.3 bits (69), Expect = 0.26
Identities = 47/239 (19%), Positives = 82/239 (34%), Gaps = 8/239 (3%)
Query: 211 KLSKLKSLDLSYNDI---VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLD 267
+ ++ +LDLS ++ I + + L P + L L YL
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 268 LGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTT 327
+ + + + D L +K L TL N L S SS L + NR++
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 328 AFTNLTNLIE-LDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSDVKNVLDKLVKLK 386
++ + + L + IS N+L +F + + D + L +VL K
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD----LSRNMLEGDASVLFGSDKNT 223
Query: 387 ALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKG 445
N G ++ +L L+L N + L L++S N G
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 344
Score = 42.6 bits (98), Expect = 7e-05
Identities = 39/320 (12%), Positives = 88/320 (27%), Gaps = 22/320 (6%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIP----SSVFMHLSDLRVLSLA 197
SL+ +T + S+ +++E+ L N I + S DL + +
Sbjct: 9 SLKLDAITTEDEKSVFA-VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 67
Query: 198 HN---RISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINP 254
R+ P L + + + + QE
Sbjct: 68 DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127
Query: 255 MMYSILADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVL 314
+ + L + + + + ++ L +++ N K ++ F+ L
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 315 CLKRNRLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENSLRDLKISGNNIQLSD 374
+ L L + S +
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN--- 244
Query: 375 VKNVLDKLVKLKALSIADMNYTDIPKGLFKM-NPHLQFLNLSGNNLQD-----IHNLLYQ 428
+ + L ++ + K+ N LQ L L N ++ + ++ +
Sbjct: 245 -----LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDE 299
Query: 429 SNIKLTHLDLSRNKFKGFDE 448
L L+L+ N+F D+
Sbjct: 300 KMPDLLFLELNGNRFSEEDD 319
Score = 37.2 bits (84), Expect = 0.004
Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 134 FHPFWGVPSLRYLNLTHNNITSLLDY-NFKGMMNLQELYLDFNKIE-----SIPSSVFMH 187
P L L+ +++D + + LQ L L +N+IE ++ + +
Sbjct: 241 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 300
Query: 188 LSDLRVLSLAHNRISKLAPRLFLKLSKLKSL 218
+ DL L L NR S+ + ++ ++ S
Sbjct: 301 MPDLLFLELNGNRFSEE-DDVVDEIREVFST 330
Score = 36.8 bits (83), Expect = 0.004
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 185 FMHLSDLRVLSLAHNRISK-----LAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQEL 239
+ L+ L L +N I L + K+ L L+L+ N E ++ +I+E+
Sbjct: 269 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE-DDVVDEIREV 327
Query: 240 KT 241
+
Sbjct: 328 FS 329
Score = 29.5 bits (64), Expect = 1.1
Identities = 35/303 (11%), Positives = 71/303 (23%), Gaps = 25/303 (8%)
Query: 5 LIFMSKLKSLDLSYNDI----VEINPEIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMC 60
L+ +K + LS N I E +D + IF + +
Sbjct: 27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL 86
Query: 61 ECALDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLE 120
+ L + + +D ++ +
Sbjct: 87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDF---------LSKHTPLEHLYLHNNGLGPQA 137
Query: 121 ELHITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESI 180
I + P LR + N + M + + + ++
Sbjct: 138 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLE------NGSMKEWAKTFQSHRLLHTV 191
Query: 181 PSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELK 240
+ L ++ + S + + L
Sbjct: 192 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251
Query: 241 TFKCRSCGLENI-NPMMYSILADLIYLDLGYNQL-----KYLLADELEDLKKLETLLLDG 294
+ G + + L L L YN++ + L E + L L L+G
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311
Query: 295 NHF 297
N F
Sbjct: 312 NRF 314
Score = 29.1 bits (63), Expect = 1.2
Identities = 15/93 (16%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 291 LLDGNHFPVILEKSFSSQFKLQVLCLKRNRL-----AKVTTTAFTNLTNLIELDISYNKL 345
L V+ S LQ L L+ N + + T + +L+ L+++ N+
Sbjct: 255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314
Query: 346 DRLEVASFDPIENSLRDLKISGNNIQLSDVKNV 378
D + + +R++ + +L ++ ++
Sbjct: 315 S-----EEDDVVDEIREVFSTRGRGELDELDDM 342
Score = 27.2 bits (58), Expect = 5.1
Identities = 14/119 (11%), Positives = 32/119 (26%), Gaps = 29/119 (24%)
Query: 207 RLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYL 266
R ++ LK ++ D + + + + +
Sbjct: 2 RFSIEGKSLKLDAITTEDEKSVFAVLLE-------------------------DDSVKEI 36
Query: 267 DLGYNQLKY----LLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRL 321
L N + L++ + K LE + ++ + L LK +L
Sbjct: 37 VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKL 95
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 210
Score = 40.0 bits (92), Expect = 2e-04
Identities = 32/211 (15%), Positives = 63/211 (29%), Gaps = 14/211 (6%)
Query: 82 PIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITNSFIPAIGFHPFWGVP 141
P PI Q+ + + +T + ++++ NS I +P
Sbjct: 11 PTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDI--KSVQGIQYLP 68
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRI 201
++ L L N +T + L L + + +
Sbjct: 69 NVTKLFLNGNKLT--------DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE 120
Query: 202 SKLAPRLFLKLSKLKSLDLSYNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILA 261
+ + + L + + + + +L T + +I P+ + L
Sbjct: 121 HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPL--AGLT 178
Query: 262 DLIYLDLGYNQLKYLLADELEDLKKLETLLL 292
L L L N + L L LK L+ L L
Sbjct: 179 KLQNLYLSKNHISDL--RALAGLKNLDVLEL 207
Score = 38.5 bits (88), Expect = 8e-04
Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 10/169 (5%)
Query: 8 MSKLKSLDLSYNDIVEINPEIFKDIQDTTMLF----QVTIFLYLLHSSASVMCPYMCECA 63
++ + + + +DI + + + + T LF ++T L +
Sbjct: 45 LNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102
Query: 64 LDDRGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELH 123
D ++ + I ++ + ++ N +T + + L+ L
Sbjct: 103 KDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 162
Query: 124 ITNSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYL 172
+ ++ I I P G+ L+ L L+ N+I+ L G+ NL L L
Sbjct: 163 LEDNQISDI--VPLAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLEL 207
Score = 35.8 bits (81), Expect = 0.007
Identities = 31/185 (16%), Positives = 65/185 (35%), Gaps = 20/185 (10%)
Query: 146 LNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLA 205
NL ++T + + ++ ++ + + I+S+ +L ++ L L N+++ +
Sbjct: 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK 84
Query: 206 PRLFLKLSKLKSLDLSYNDIVEINPEIFKD------------IQELKTFKCRSCGLENIN 253
P LK LD + + ++ K I L N
Sbjct: 85 PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144
Query: 254 PMMYSILADLIYLDLGYNQLKYLLAD--ELEDLKKLETLLLDGNHFPVILEKSFSSQFKL 311
+ + + + ++D L L KL+ L L NH + ++ + L
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL--RALAGLKNL 202
Query: 312 QVLCL 316
VL L
Sbjct: 203 DVLEL 207
Score = 34.6 bits (78), Expect = 0.016
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 18/192 (9%)
Query: 260 LADLIYLDLGYNQLKYLLADELEDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRN 319
A+ I +L + + +L ++ ++ + + + + + L L N
Sbjct: 23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN 78
Query: 320 RLAKVTTTAFTNLTNLIELDISYNKLDRLEVASFDPIENS--------LRDLKISGNNIQ 371
+L + A + LD + K S + L
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 372 LSDVKNVLDKLVKLKALSIADMNYTDIPKGL----FKMNPHLQFLNLSGNNLQDIHNLLY 427
L N + + L L+ D + + LQ L LS N++ D+ L
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAG 198
Query: 428 QSNIKLTHLDLS 439
N L L+L
Sbjct: 199 LKN--LDVLELF 208
Score = 34.2 bits (77), Expect = 0.019
Identities = 24/202 (11%), Positives = 57/202 (28%), Gaps = 17/202 (8%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
+ L + + L+ + + ++ I + L + L L+ N +
Sbjct: 25 ETIKDNLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKL 80
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADELEDLK 285
+I P + + + + + G + + L+ +
Sbjct: 81 TDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE-HNGISDINGLVHLPQLESL 139
Query: 286 KLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDISYNKL 345
L + L K + + + LT L L +S N +
Sbjct: 140 YLGNNKITDITVLSRLTKLDTLSLEDNQIS---------DIVPLAGLTKLQNLYLSKNHI 190
Query: 346 DRLEVASFDPIENSLRDLKISG 367
L + ++N L L++
Sbjct: 191 SDLR--ALAGLKN-LDVLELFS 209
Score = 29.2 bits (64), Expect = 0.97
Identities = 7/38 (18%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 409 LQFLNLSGNNLQDIHNLLYQSNIKLTHLDLSRNKFKGF 446
+ + + ++++ + + Y N +T L L+ NK
Sbjct: 48 IDQIIANNSDIKSVQGIQYLPN--VTKLFLNGNKLTDI 83
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor
receptor, N-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 37.1 bits (84), Expect = 0.002
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 142 SLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNK-IESIPSSVFMHLSDLRVLSLAHNR 200
L T + L + G NL ELY++ + ++ + L +LR L++ +
Sbjct: 9 GSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 201 ISKLAPRLFLKLSKLKSLDLSYNDIVEINPEIF 233
+ +AP F +L L+LS+N + ++ +
Sbjct: 68 LRFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100
Score = 29.8 bits (65), Expect = 0.45
Identities = 11/92 (11%), Positives = 27/92 (29%)
Query: 166 NLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLSYNDI 225
L + + + + + L R L +L++L + + +
Sbjct: 9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 226 VEINPEIFKDIQELKTFKCRSCGLENINPMMY 257
+ P+ F L LE+++
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNALESLSWKTV 100
Score = 29.0 bits (63), Expect = 0.78
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 103 NPNHLTIGPIFQQFQHLEELHIT-NSFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNF 161
L ++L EL+I + + G+ LR L + + + + F
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMH 187
L L L FN +ES+
Sbjct: 77 HFTPRLSRLNLSFNALESLSWKTVQG 102
Score = 27.1 bits (58), Expect = 3.7
Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 385 LKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNN-LQDIHNLLYQSNIKLTHLDLSRNKF 443
L D L + + LQ + + +L +L + ++
Sbjct: 10 SSGLRCTRDGALDSLHHLPGAENLTEL-YIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68
Query: 444 KGFDEKSYIMSEPKNIHKAAKNSF 467
+ ++ + + + N+
Sbjct: 69 RFVAPDAFHFTPRLSRLNLSFNAL 92
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes
[TaxId: 1639]}
Length = 199
Score = 37.3 bits (85), Expect = 0.002
Identities = 20/164 (12%), Positives = 49/164 (29%), Gaps = 4/164 (2%)
Query: 8 MSKLKSLDLSYNDIVEINP-EIFKDIQDTTMLFQVTIFLYLLHSSASVMCPYMCECALDD 66
+ ++ +L I I+ E ++ + L + ++ M + D
Sbjct: 39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD 98
Query: 67 RGRYEIVCRRGDMANPIPIGQMDLGTEVLKIVPSEENPNHLTIGPIFQQFQHLEELHITN 126
+ + + L + E ++ TI I +
Sbjct: 99 ITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNF 157
Query: 127 SFIPAIGFHPFWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQEL 170
S P + +L L+++ N ++ + + NL+ L
Sbjct: 158 SSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESL 199
Score = 36.6 bits (83), Expect = 0.003
Identities = 29/189 (15%), Positives = 53/189 (28%), Gaps = 14/189 (7%)
Query: 162 KGMMNLQELYLDFNKIESIPSSVFMHLSDLRVLSLAHNRISKLAPRLFLKLSKLKSLDLS 221
+ + L + S L + L I + L+ L ++ S
Sbjct: 15 TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFS 70
Query: 222 YNDIVEINPEIFKDIQELKTFKCRSCGLENINPMMYSILADLIYLDLGYNQLKYLLADEL 281
N + +I P + ++ ++ + + L
Sbjct: 71 NNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130
Query: 282 EDLKKLETLLLDGNHFPVILEKSFSSQFKLQVLCLKRNRLAKVTTTAFTNLTNLIELDIS 341
L+ + D + + + QV LK NLT L LDIS
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLK----------PLANLTTLERLDIS 180
Query: 342 YNKLDRLEV 350
NK+ + V
Sbjct: 181 SNKVSDISV 189
Score = 28.9 bits (63), Expect = 1.1
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 380 DKLVKLKALSIADMNYTDIPKGLFKMNPHLQFLNLSGNNLQDIHNLLYQSNIKLTHLDLS 439
L + + N TD + L ++ I + Y +N LT ++ S
Sbjct: 15 TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDGVEYLNN--LTQINFS 70
Query: 440 RNKFKGF 446
N+
Sbjct: 71 NNQLTDI 77
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
(Chlamydomonas reinhardtii) [TaxId: 3055]}
Length = 198
Score = 31.2 bits (69), Expect = 0.17
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 150 HNNITSL--LDYNFKGMMNLQELYLDFNKIESIPSSVFMHLSDLRVL 194
H I + +D + + L L N IE I S + +LR+L
Sbjct: 31 HGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS--LSGMENLRIL 75
Score = 26.6 bits (57), Expect = 6.0
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 137 FWGVPSLRYLNLTHNNITSLLDYNFKGMMNLQELYLDFNKIESIPSSVFMH 187
+ + ++L L+ NNI + + GM NL+ L L N I+ I + +
Sbjct: 44 LSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIENLDAVA 92
>d1gq6a_ c.42.1.1 (A:) Proclavaminate amidino hydrolase
{Streptomyces clavuligerus [TaxId: 1901]}
Length = 301
Score = 27.2 bits (59), Expect = 5.0
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 7 FMSKLKSLDLSYNDIVEINPEIFKDIQDTTMLFQVTIFLYLLHSSA 52
+ + L D++E++P D T + I LL+ A
Sbjct: 255 LLRCVGDLKPVGFDVMEVSPL--YDHGGITSILATEIGAELLYQYA 298
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.138 0.394
Gapped
Lambda K H
0.267 0.0428 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,786,670
Number of extensions: 85978
Number of successful extensions: 698
Number of sequences better than 10.0: 1
Number of HSP's gapped: 399
Number of HSP's successfully gapped: 172
Length of query: 497
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 408
Effective length of database: 1,185,626
Effective search space: 483735408
Effective search space used: 483735408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.7 bits)