BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10290
(128 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VAD|A Chain A, Crystal Structure Of I170f Mutant Branched-chain
Alpha-ketoacid Dehydrogenase Kinase In Complex With
3,6-dichlorobenzo[b]thiophene-2- Carboxylic Acid
Length = 418
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 DEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKEL 92
++P V TP L+ SQDG+ L+ LQ+EL
Sbjct: 64 EKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQEL 98
>pdb|3TZ0|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
pdb|3TZ2|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX
pdb|3TZ4|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinaseS-Alpha-Chloroisocaproate Complex
With Adp
pdb|3TZ5|A Chain A, Crystal Structure Of Branched-Chain Alpha-Ketoacid
Dehydrogenase KinasePHENYLBUTYRATE COMPLEX WITH ADP
Length = 418
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 DEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKEL 92
++P V TP L+ SQDG+ L+ LQ+EL
Sbjct: 64 EKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQEL 98
>pdb|1GJV|A Chain A, Branched-chain Alpha-ketoacid Dehydrogenase Kinase (bck)
Complxed With Atp-gamma-s
pdb|1GKX|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
pdb|1GKZ|A Chain A, Branched-Chain Alpha-Ketoacid Dehydrogenase Kinase (Bck)
Complxed With Adp
Length = 388
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 59 DEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKEL 92
++P V TP L+ SQDG+ L+ LQ+EL
Sbjct: 34 EKPSVRLTPTMMLYSGRSQDGSHLLKSGRYLQQEL 68
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTS 363
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTS 357
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTS 357
>pdb|4GVR|A Chain A, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase
pdb|4GVR|B Chain B, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase
pdb|4GVR|C Chain C, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase
pdb|4GVS|A Chain A, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
N5-Formyl- Tetrahydromethanopterin
pdb|4GVS|B Chain B, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
N5-Formyl- Tetrahydromethanopterin
pdb|4GVS|C Chain C, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
N5-Formyl- Tetrahydromethanopterin
Length = 316
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 113 TDDIALACLGLEKEGW 128
TD A+ACLG +K GW
Sbjct: 82 TDHPAIACLGSQKAGW 97
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTS 359
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTS 359
>pdb|4GVQ|A Chain A, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
Tetrahydromethanpterin
pdb|4GVQ|B Chain B, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
Tetrahydromethanpterin
pdb|4GVQ|C Chain C, X-Ray Structure Of The Archaeoglobus Fulgidus Methenyl-
Tetrahydromethanopterin Cyclohydrolase In Complex With
Tetrahydromethanpterin
Length = 316
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 113 TDDIALACLGLEKEGW 128
TD A+ACLG +K GW
Sbjct: 82 TDHPAIACLGSQKAGW 97
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 77 DGAATLEKNHQLQKELGAKNVLLGPEQL 104
+G A L H + ++L A+NVLL ++L
Sbjct: 145 EGMAYLHAQHYIHRDLAARNVLLDNDRL 172
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 77 DGAATLEKNHQLQKELGAKNVLLGPEQL 104
+G A L H + + L A+NVLL ++L
Sbjct: 128 EGMAYLHSQHYIHRNLAARNVLLDNDRL 155
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTS 49
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTS 51
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 53 CHVIGEDEPDVNFTPNGYLFCAS 75
C + E++ DV P G+L C S
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTS 52
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 77 DGAATLEKNHQLQKELGAKNVLLGPEQL 104
+G A L H + + L A+NVLL ++L
Sbjct: 128 EGMAYLHAQHYIHRNLAARNVLLDNDRL 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,773,871
Number of Sequences: 62578
Number of extensions: 139132
Number of successful extensions: 470
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 18
length of query: 128
length of database: 14,973,337
effective HSP length: 87
effective length of query: 41
effective length of database: 9,529,051
effective search space: 390691091
effective search space used: 390691091
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)