Query psy10290
Match_columns 128
No_of_seqs 111 out of 1071
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:40:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10290.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10290hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02352 thiamin_ThiO glycine 99.7 3.3E-17 7.1E-22 120.2 11.5 118 7-128 10-133 (337)
2 TIGR01373 soxB sarcosine oxida 99.7 5.4E-17 1.2E-21 122.6 11.5 115 7-128 58-179 (407)
3 PRK00711 D-amino acid dehydrog 99.7 9.2E-16 2E-20 115.9 11.4 116 6-128 25-197 (416)
4 PRK12409 D-amino acid dehydrog 99.7 9.8E-16 2.1E-20 115.8 11.3 114 7-128 27-193 (410)
5 KOG2853|consensus 99.6 1.4E-15 3.1E-20 111.5 9.3 122 7-128 116-239 (509)
6 TIGR03364 HpnW_proposed FAD de 99.6 3.6E-14 7.8E-19 105.7 11.7 113 7-128 26-141 (365)
7 KOG2844|consensus 99.6 3E-14 6.5E-19 111.5 10.3 116 5-127 65-182 (856)
8 PF01266 DAO: FAD dependent ox 99.5 1.4E-13 3.1E-18 101.0 11.3 112 7-125 25-141 (358)
9 TIGR03329 Phn_aa_oxid putative 99.5 1.3E-13 2.9E-18 106.0 11.4 112 7-128 52-179 (460)
10 PRK11728 hydroxyglutarate oxid 99.4 1.3E-12 2.8E-17 98.6 10.9 111 6-128 29-145 (393)
11 TIGR01377 soxA_mon sarcosine o 99.4 2.1E-12 4.6E-17 96.5 11.0 112 7-128 26-141 (380)
12 COG0579 Predicted dehydrogenas 99.4 4.3E-12 9.4E-17 96.4 10.5 105 12-125 38-147 (429)
13 TIGR03377 glycerol3P_GlpA glyc 99.4 3.8E-12 8.2E-17 99.2 10.3 105 7-123 11-121 (516)
14 PRK11259 solA N-methyltryptoph 99.4 5.5E-12 1.2E-16 94.1 10.8 112 7-128 29-145 (376)
15 PRK11101 glpA sn-glycerol-3-ph 99.3 3.9E-11 8.3E-16 94.3 10.0 106 7-124 32-143 (546)
16 TIGR03197 MnmC_Cterm tRNA U-34 99.2 4.1E-11 9E-16 90.0 7.1 108 7-128 12-131 (381)
17 PRK13339 malate:quinone oxidor 99.2 1.8E-10 3.9E-15 89.5 9.9 116 5-125 33-178 (497)
18 PTZ00383 malate:quinone oxidor 99.1 1E-09 2.2E-14 85.4 12.3 115 7-125 73-204 (497)
19 TIGR01320 mal_quin_oxido malat 99.1 4.1E-10 9E-15 87.3 9.7 118 6-128 27-174 (483)
20 PRK01747 mnmC bifunctional tRN 99.1 3.8E-10 8.1E-15 90.5 7.7 110 7-128 286-404 (662)
21 PRK05257 malate:quinone oxidor 99.0 2.5E-09 5.4E-14 83.2 10.5 116 6-125 32-177 (494)
22 KOG2820|consensus 99.0 1.8E-09 3.9E-14 79.4 7.8 114 6-128 35-149 (399)
23 COG0665 DadA Glycine/D-amino a 99.0 2.4E-09 5.1E-14 80.1 8.2 115 7-128 30-152 (387)
24 KOG2665|consensus 98.6 6.3E-08 1.4E-12 71.1 4.2 108 7-125 76-190 (453)
25 PLN02464 glycerol-3-phosphate 97.8 0.00013 2.9E-09 58.6 8.7 112 7-128 97-228 (627)
26 COG0578 GlpA Glycerol-3-phosph 97.8 0.00016 3.5E-09 56.9 8.1 110 7-124 38-158 (532)
27 PRK13369 glycerol-3-phosphate 97.1 0.0016 3.4E-08 51.1 6.6 107 7-125 32-149 (502)
28 PRK12266 glpD glycerol-3-phosp 96.5 0.014 3E-07 46.0 7.4 47 7-53 32-81 (508)
29 KOG2852|consensus 95.3 0.022 4.7E-07 42.1 3.3 66 5-74 40-106 (380)
30 KOG0042|consensus 92.1 0.17 3.7E-06 40.4 3.2 28 95-122 189-216 (680)
31 PF08032 SpoU_sub_bind: RNA 2' 60.8 20 0.00043 20.2 3.7 49 70-118 20-68 (76)
32 KOG3363|consensus 53.5 27 0.00059 23.7 3.7 81 29-124 88-172 (196)
33 PF00585 Thr_dehydrat_C: C-ter 52.4 16 0.00034 22.0 2.3 41 67-107 48-89 (91)
34 PF06039 Mqo: Malate:quinone o 52.3 76 0.0016 25.4 6.5 69 40-111 85-157 (488)
35 PF07867 DUF1654: Protein of u 50.6 17 0.00038 21.1 2.2 33 40-74 34-66 (73)
36 PF09383 NIL: NIL domain; Int 48.0 29 0.00062 19.7 2.9 33 66-99 43-76 (76)
37 COG4024 Uncharacterized protei 46.5 65 0.0014 22.3 4.7 65 41-112 75-146 (218)
38 COG3564 Uncharacterized protei 37.7 38 0.00083 20.9 2.4 25 40-71 11-35 (116)
39 PF10137 TIR-like: Predicted n 37.1 1.1E+02 0.0024 19.6 4.6 18 82-99 13-30 (125)
40 cd04907 ACT_ThrD-I_2 Second of 35.4 93 0.002 18.1 3.8 39 68-107 40-79 (81)
41 PRK11118 putative monooxygenas 33.1 1.2E+02 0.0025 18.9 3.9 63 32-95 13-79 (100)
42 PF11203 DUF2984: Protein of u 30.9 91 0.002 19.0 3.3 31 81-111 40-70 (98)
43 cd04906 ACT_ThrD-I_1 First of 28.9 1.2E+02 0.0025 17.6 3.5 39 68-106 39-79 (85)
44 PF08002 DUF1697: Protein of u 28.6 1.7E+02 0.0036 18.9 4.5 48 64-111 38-92 (137)
45 PF08803 ydhR: Putative mono-o 27.6 1.4E+02 0.003 18.4 3.7 64 32-95 10-76 (97)
46 PF04255 DUF433: Protein of un 27.2 9.4 0.0002 20.7 -1.4 19 99-117 32-50 (56)
47 PF09286 Pro-kuma_activ: Pro-k 24.7 1.9E+02 0.004 18.5 4.2 40 70-109 16-58 (143)
48 TIGR03704 PrmC_rel_meth putati 24.4 1.9E+02 0.004 20.7 4.5 53 41-104 190-243 (251)
49 PF05240 APOBEC_C: APOBEC-like 24.3 1.3E+02 0.0028 16.5 2.8 27 82-108 4-30 (55)
50 PRK14188 bifunctional 5,10-met 23.9 1.6E+02 0.0036 21.8 4.2 45 70-114 37-88 (296)
51 PF05157 T2SE_Nter: Type II se 23.7 1.7E+02 0.0036 17.2 3.7 42 66-107 55-98 (109)
52 KOG4498|consensus 23.5 1.8E+02 0.0039 20.3 4.0 57 64-122 57-113 (197)
53 PF13587 DJ-1_PfpI_N: N-termin 23.2 60 0.0013 16.2 1.3 24 4-27 1-24 (38)
54 KOG3045|consensus 23.0 1.5E+02 0.0033 22.1 3.7 51 38-97 236-287 (325)
55 PF03932 CutC: CutC family; I 22.8 1.4E+02 0.0031 20.8 3.5 35 61-95 53-87 (201)
56 KOG3923|consensus 22.7 2.4E+02 0.0053 21.4 4.8 87 15-110 45-135 (342)
57 PF14698 ASL_C2: Argininosucci 22.6 1.3E+02 0.0028 17.0 2.8 37 80-117 23-59 (70)
58 PRK13660 hypothetical protein; 22.4 1.2E+02 0.0027 20.8 3.1 40 68-107 131-174 (182)
59 PF13280 WYL: WYL domain 22.4 1.3E+02 0.0029 19.1 3.2 40 66-108 124-164 (172)
60 PHA02552 4 head completion pro 22.1 1.4E+02 0.0031 19.9 3.2 28 82-109 120-147 (151)
61 PHA03118 multifunctional expre 21.2 1E+02 0.0022 24.0 2.6 40 12-51 245-284 (474)
62 COG1397 DraG ADP-ribosylglycoh 20.9 93 0.002 23.4 2.4 22 88-109 17-38 (314)
63 PF05861 PhnI: Bacterial phosp 20.9 92 0.002 23.8 2.3 54 70-124 2-58 (358)
64 KOG3366|consensus 20.3 1.9E+02 0.0041 19.8 3.5 28 81-109 116-143 (172)
65 PRK11572 copper homeostasis pr 20.0 2E+02 0.0044 20.9 3.9 35 61-95 54-88 (248)
66 PF09830 ATP_transf: ATP adeny 20.0 1.8E+02 0.0038 16.1 3.3 28 68-95 33-62 (62)
No 1
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=99.74 E-value=3.3e-17 Score=120.24 Aligned_cols=118 Identities=15% Similarity=0.144 Sum_probs=101.4
Q ss_pred eeeec-ccccccccccccchhhhhc----CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQF----SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~----~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~ 80 (128)
|+|+| ..++.|+|++|+|++++.. ....+.+|+.+|+++|+++.+++. +..++++.|+++|.|+++ ++++.+
T Consensus 10 V~vle~~~~~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~--~~~~~~~~~~~~G~l~~a~~~~~~~ 87 (337)
T TIGR02352 10 VTLFDRDPMGGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALK--ELTGLDTGYHQCGTLVVAFDEDDVE 87 (337)
T ss_pred eEEEcCCCCCcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHH--HhcCCCcCeEEccEEEEeCCHHHHH
Confidence 66677 4689999999999998754 345689999999999999987763 223378899999999999 999999
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
.+++..+..+..|++.++++++++++++|.++ +++.+|+|.|.+ ||
T Consensus 88 ~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~-~~~~~g~~~~~~-g~ 133 (337)
T TIGR02352 88 HLRQLADLQSATGMEVEWLSGRALRRLEPYLS-GGIRGAVFYPDD-AH 133 (337)
T ss_pred HHHHHHHHHHhcCCceEEcCHHHHHHhCCCCC-cccceEEEcCCC-ce
Confidence 99999999999999999999999999999998 578899999886 76
No 2
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.73 E-value=5.4e-17 Score=122.55 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=101.6
Q ss_pred eeeec-ccccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEK 84 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~ 84 (128)
|+|+| ..+++|+|++|+|+++..+..+...+++.+|+++|+++.++++ +++.|+++|.|+++ ++++.+.+++
T Consensus 58 V~vle~~~~~~gas~~~~g~~~~~~~~~~~~~~~~~s~~l~~~l~~~~~------~~~~~~~~G~l~~a~~~~~~~~l~~ 131 (407)
T TIGR01373 58 VAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKLWEGLSQDLN------YNVMFSQRGVLNLCHSTADMDDGAR 131 (407)
T ss_pred EEEEEcccccCcccccccceeeecccCccccHHHHHHHHHHHHHHHHhC------CCcCEEeccEEEEeCCHHHHHHHHH
Confidence 66676 4689999999999999888776678899999999999998887 78889999999999 9998999999
Q ss_pred HHHHHHHcCCCcceeCHhhHHHhCCCCCcC-----CceeEEecCCCCCC
Q psy10290 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTD-----DIALACLGLEKEGW 128 (128)
Q Consensus 85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~-----~~~ga~~~p~d~g~ 128 (128)
.++.+++.|+++++|+++++++++|.++.+ .+.++++.|.+ |+
T Consensus 132 ~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~ga~~~~~~-g~ 179 (407)
T TIGR01373 132 RVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVGGLLQRRG-GT 179 (407)
T ss_pred HHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeEEEEcCCC-Cc
Confidence 999899999999999999999999999853 36789999876 64
No 3
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.67 E-value=9.2e-16 Score=115.94 Aligned_cols=116 Identities=13% Similarity=0.105 Sum_probs=99.3
Q ss_pred eeeeecc--cccccccccccchhhhhcCc---------------------------------------------------
Q psy10290 6 ILASLVS--LYARASTTLSVGGLRQQFSL--------------------------------------------------- 32 (128)
Q Consensus 6 ~~~~~~~--~~~~gaS~~~~g~~~~~~~~--------------------------------------------------- 32 (128)
=|+|+|. .++.|||++|+|++.+.+..
T Consensus 25 ~V~vle~~~~~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (416)
T PRK00711 25 EVTVIDRQPGPALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQRHAPLAIRPDGDPFQLRWMWQMLRNCTASRYAVN 104 (416)
T ss_pred EEEEEeCCCchhhhheeccCcccccccccccCCCchhhhhhhhccCCCCCeEecCCCCHHHHHHHHHHHHhCCHHHHHHH
Confidence 3677775 47999999999998775421
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCC
Q psy10290 33 -RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPW 110 (128)
Q Consensus 33 -~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~ 110 (128)
..+.+|+.+|.++|+++.++++ +++.|+++|.|.++ ++++.+.+++.++.+++.|+++++|+++++++++|.
T Consensus 105 ~~~~~~l~~~s~~~~~~l~~~~~------~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~ 178 (416)
T PRK00711 105 KSRMVRLAEYSRDCLKALRAETG------IQYEGRQGGTLQLFRTQQQLDAAAKDIAVLEEAGVPYELLDRDELAAVEPA 178 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhC------CccccccCcEEEEECCHHHHHHHHHHHHHHHHcCCCceecCHHHHHHhCCC
Confidence 1356788899999999998888 88999999999999 888889999999999999999999999999999998
Q ss_pred CC--cCCceeEEecCCCCCC
Q psy10290 111 LN--TDDIALACLGLEKEGW 128 (128)
Q Consensus 111 l~--~~~~~ga~~~p~d~g~ 128 (128)
++ .+.+.+|+|.|++ ||
T Consensus 179 l~~~~~~~~ga~~~p~~-g~ 197 (416)
T PRK00711 179 LAGVRHKLVGGLRLPND-ET 197 (416)
T ss_pred ccCCCccceeEEECCCc-cc
Confidence 86 2578899999886 64
No 4
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.66 E-value=9.8e-16 Score=115.81 Aligned_cols=114 Identities=16% Similarity=0.148 Sum_probs=97.5
Q ss_pred eeeecc-c-ccccccccccchhhhhcCc--------------------------------------------------HH
Q psy10290 7 LASLVS-L-YARASTTLSVGGLRQQFSL--------------------------------------------------RE 34 (128)
Q Consensus 7 ~~~~~~-~-~~~gaS~~~~g~~~~~~~~--------------------------------------------------~~ 34 (128)
|+|+|. . ++.|+|++|+|++.+.+.. ..
T Consensus 27 V~vle~~~~~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (410)
T PRK12409 27 VTVFDRHRYAAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLRKDAPLLLNPKPSWHKYSWLAEFLAHIPNYRANTIE 106 (410)
T ss_pred EEEEeCCCCCCcCcccccCCEEeecccccccChHHHHhhhHHhcCCCCCeEecCCCCHHHHHHHHHHHhccHHHHHHHHH
Confidence 677775 3 6999999999999653211 12
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCc
Q psy10290 35 NIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT 113 (128)
Q Consensus 35 ~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~ 113 (128)
..+|+.+|.++|+++.++++ +++.|+++|.|+++ ++++.+.+++.++.+++.|++.++|+++++++++|.++
T Consensus 107 ~~~l~~~~~~~~~~l~~~~~------~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~- 179 (410)
T PRK12409 107 TVRLAIAARKHLFDIAEREG------IDFDLERRGILHIYHDKAGFDHAKRVNALLAEGGLERRAVTPEEMRAIEPTLT- 179 (410)
T ss_pred HHHHHHHHHHHHHHHHHhhC------CcceeecCcEEEEECCHHHHHhccHHHHHHHhcCCCeEEcCHHHHHHhCCCCc-
Confidence 46789999999999999888 88999999999999 99998889999999999999999999999999999998
Q ss_pred CCceeEEecCCCCCC
Q psy10290 114 DDIALACLGLEKEGW 128 (128)
Q Consensus 114 ~~~~ga~~~p~d~g~ 128 (128)
+++.+|+|+|++ ||
T Consensus 180 ~~~~ga~~~~~~-g~ 193 (410)
T PRK12409 180 GEYYGGYYTPSD-ST 193 (410)
T ss_pred cccceEEEcCCC-Cc
Confidence 478899999886 64
No 5
>KOG2853|consensus
Probab=99.64 E-value=1.4e-15 Score=111.52 Aligned_cols=122 Identities=52% Similarity=0.888 Sum_probs=111.3
Q ss_pred eeeecc--cccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEeChhhHHHHHH
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEK 84 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a~~~~~~~l~~ 84 (128)
|.|+|. .....||.-+.|-+..+++-|...+|++.+.++.++..+++++-+..++|..|.++|+|+++++++.+.++.
T Consensus 116 VvVVErddtytqssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s 195 (509)
T KOG2853|consen 116 VVVVERDDTYTQSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRS 195 (509)
T ss_pred EEEEeccCcccccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhccccCCCCCcccCCCceEEEcchhhHHHHHH
Confidence 455554 457888889999999999999999999999999999999998666666889999999999998888899999
Q ss_pred HHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
..+..++.|..+++|++++++.++|+|+++++.-|.+.-++|||
T Consensus 196 ~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e~EGw 239 (509)
T KOG2853|consen 196 NSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVEKEGW 239 (509)
T ss_pred hHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccccccc
Confidence 99999999999999999999999999999999999998899999
No 6
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.58 E-value=3.6e-14 Score=105.73 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=95.3
Q ss_pred eeeecc-cccccccccccchhhhhcCc-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHH
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQQFSL-RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLE 83 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~~~~~-~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~ 83 (128)
|+|+|. .++.|||++|+|++.+.... ....+++.++.++|+++.++++ + .|+++|.|+++ ++++.+.++
T Consensus 26 V~vle~~~~~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~--~~~~~g~l~~~~~~~~~~~~~ 97 (365)
T TIGR03364 26 VTVIERSSRAQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLELAAKAG------I--WVRENGSLHLARTEEELAVLE 97 (365)
T ss_pred EEEEeCCCCCCCcccccCceEEecCCCCccHHHHHHHHHHHHHHHHHHcC------C--CEEeCCEEEEeCCHHHHHHHH
Confidence 567774 67899999999999764443 4567799999999999998876 4 58899999999 888878888
Q ss_pred HHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 84 KNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 84 ~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+..+..+..|+++++|+++++++++|.|+.+.+.+|+|.|++ ||
T Consensus 98 ~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~-g~ 141 (365)
T TIGR03364 98 EFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLHSPDE-LR 141 (365)
T ss_pred HHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEEcCCC-ee
Confidence 888777788999999999999999999976688999999876 65
No 7
>KOG2844|consensus
Probab=99.56 E-value=3e-14 Score=111.47 Aligned_cols=116 Identities=21% Similarity=0.220 Sum_probs=104.4
Q ss_pred eeeeeecccccccccccccchhhhhcCcHH-HHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHH
Q psy10290 5 HILASLVSLYARASTTLSVGGLRQQFSLRE-NIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 82 (128)
Q Consensus 5 ~~~~~~~~~~~~gaS~~~~g~~~~~~~~~~-~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l 82 (128)
-.|++.+....+|+|+.++|.+...+..+. ...++..++.+++++.++.+ .+..|+++|.|++| +...+..+
T Consensus 65 ~avlle~~~ltsgttwhtagl~~~lr~~dv~~qlia~~~~~l~~~leeEtg------l~tGwiq~G~~~lAs~~~R~de~ 138 (856)
T KOG2844|consen 65 GAVLLERSRLTSGTTWHTAGLLWQLFPSDVELQLIAHTSRVLYRELEEETG------LHTGWIQNGGIFLASNRQRLDEY 138 (856)
T ss_pred ceEEEeeeeeccccccccccceeeccCCchhHHHHHHHHHHHHHHHHHhcC------CCcceecCCceEEecCHHHHHHH
Confidence 356666678899999999999988454444 67789999999999998888 88899999999999 99999999
Q ss_pred HHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCC
Q psy10290 83 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 127 (128)
Q Consensus 83 ~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g 127 (128)
++.......+|++.++|+++++++++|.|+.+++.+++|.|+| |
T Consensus 139 kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly~P~D-G 182 (856)
T KOG2844|consen 139 KRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLYSPGD-G 182 (856)
T ss_pred HHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeeecCCC-c
Confidence 9999999999999999999999999999999999999999998 5
No 8
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.53 E-value=1.4e-13 Score=100.99 Aligned_cols=112 Identities=25% Similarity=0.325 Sum_probs=102.0
Q ss_pred eeeecc-cccccccccccchhhhh---cCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQQ---FSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~~---~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|.++|. .++.|+|++++|++++. +..+.+.+++.+|.+.|+++.++.+ .++.|+++|.|.++ ++.+.+.
T Consensus 25 V~l~e~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~g~l~~~~~~~~~~~ 98 (358)
T PF01266_consen 25 VTLLERGDIGSGASGRSGGLVRPGISSYPDPQYARLARESVEFWRELAEEYG------IPVGFRPCGSLYLAEDEEDAES 98 (358)
T ss_dssp EEEEESSSTTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHHHHHHHTT------SSCEEEECEEEEEESSHHHHHH
T ss_pred EEEEeeccccccccccccccccccccccccccccchhhhhccchhhhhhhcC------cccccccccccccccchhhhhh
Confidence 566664 68999999999999987 6777899999999999999988888 77889999999999 9999999
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
+++..+.+++.+++.++++++++++++|.+. +.+..++|.|++
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~ 141 (358)
T PF01266_consen 99 LERLLDRLRRNGIPYELLSPEELRELFPFLN-PRIEGGVFFPEG 141 (358)
T ss_dssp HHHHHHHHHHTTTTEEEEEHHHHHHHSTTSS-TTTEEEEEETTE
T ss_pred ccccccccccccccccccchhhhhhhhcccc-cchhhhhccccc
Confidence 9999999999999999999999999999998 688889998775
No 9
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.53 E-value=1.3e-13 Score=105.96 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=87.6
Q ss_pred eeeecc-cccccccccccchhhh----------hcCcHHHHHHHHHH---HHHHHHHHHhhcccCCCCCCcceeecceEE
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQ----------QFSLRENIEMSLFG---AEFLRNIKHHCHVIGEDEPDVNFTPNGYLF 72 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~----------~~~~~~~~~la~~s---~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~ 72 (128)
|+|+|. .+|+|+|++|+|++.+ .++.+...+|...+ .+.++++.++++ ++|.|+++|.|+
T Consensus 52 V~vlE~~~~g~GaSgrn~G~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~l~~~~~------i~~~~~~~G~l~ 125 (460)
T TIGR03329 52 VLVLEADLCGAGASGRNGGCMLTWSTKFFTLKRLFGEAEAARLVKASEQAVLEIAAFCEQHN------IDAQLRLDGTLY 125 (460)
T ss_pred EEEEeCCccccccccccCccccccccCHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhC------CCCCcccCCEEE
Confidence 567774 6899999999997632 23344455555555 455555555666 899999999999
Q ss_pred Ee-ChhhHHHHHHHHHHHHHcCCC-cceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 73 CA-SQDGAATLEKNHQLQKELGAK-NVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 73 ~a-~~~~~~~l~~~~~~~~~~G~~-~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
++ ++++.+.+++..+.+++.|++ +++|+++++++++|. +.+.+|+|+|++ |+
T Consensus 126 ~a~~~~~~~~l~~~~~~~~~~G~~~~~~l~~~e~~~~~~~---~~~~~g~~~~~~-g~ 179 (460)
T TIGR03329 126 TATNPAQVGSMDPVVDALERRGINSWQRLSEGELARRTGS---ARHLEGFYSPVA-AS 179 (460)
T ss_pred EecCHHHHHHHHHHHHHHHHhCCCCeEEcCHHHHHHHhCC---CcceEEEEeCCC-eE
Confidence 99 889899999999999999987 599999999999983 367789999886 64
No 10
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.44 E-value=1.3e-12 Score=98.55 Aligned_cols=111 Identities=18% Similarity=0.142 Sum_probs=93.8
Q ss_pred eeeeecc--cccccccccccchhhhh--cCcH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhH
Q psy10290 6 ILASLVS--LYARASTTLSVGGLRQQ--FSLR-ENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGA 79 (128)
Q Consensus 6 ~~~~~~~--~~~~gaS~~~~g~~~~~--~~~~-~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~ 79 (128)
=|.|+|. .++.|+|++|+|++++. +... ...+|+.+|.++|+++.++++ +.|+++|.|+++ ++++.
T Consensus 29 ~V~llE~~~~~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~G~l~~~~~~~~~ 100 (393)
T PRK11728 29 RIAVLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQHG--------IPYEECGKLLVATSELEL 100 (393)
T ss_pred eEEEEeCCCcccccccccCcceEccccccCcHHHHHHHHHHHHHHHHHHHHHcC--------CCcccCCEEEEEcCHHHH
Confidence 4677775 37999999999999874 2322 368999999999999998866 468999999999 88888
Q ss_pred HHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 80 ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 80 ~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+.+++..+.+++.|+++++++++++++++|.+. . .+|+|.|.+ ||
T Consensus 101 ~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~--~-~~al~~p~~-g~ 145 (393)
T PRK11728 101 ERMEALYERARANGIEVERLDAEELREREPNIR--G-LGAIFVPST-GI 145 (393)
T ss_pred HHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCcc--c-cceEEcCCc-eE
Confidence 999999999999999999999999999999876 2 589999886 64
No 11
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.43 E-value=2.1e-12 Score=96.49 Aligned_cols=112 Identities=17% Similarity=0.190 Sum_probs=93.2
Q ss_pred eeeecc-cc--cccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHH
Q psy10290 7 LASLVS-LY--ARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 82 (128)
Q Consensus 7 ~~~~~~-~~--~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l 82 (128)
|+++|. .+ +.++|..++++++..+..+.+.+++.+|+++|+++.++.+ +++ +.++|.|.++ +++ +.+
T Consensus 26 V~l~e~~~~~~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~------~~~-~~~~G~l~~~~~~~--~~~ 96 (380)
T TIGR01377 26 TLLLEQFDLPHSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQLEKEAG------TKL-HRQTGLLLLGPKEN--QFL 96 (380)
T ss_pred EEEEeccCCCCCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHHHHHhC------Cee-EeecCeEEEcCCCc--HHH
Confidence 667775 44 3467778889998888888889999999999999998877 655 6789999998 554 677
Q ss_pred HHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 83 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 83 ~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
++..+.+++.|++.++|+++++++++|.++.+...+|+|.|.+ ||
T Consensus 97 ~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~~~~~-g~ 141 (380)
T TIGR01377 97 KTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLLDPNG-GV 141 (380)
T ss_pred HHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEEcCCC-cE
Confidence 8888888999999999999999999999976667789999886 64
No 12
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.39 E-value=4.3e-12 Score=96.42 Aligned_cols=105 Identities=21% Similarity=0.154 Sum_probs=93.9
Q ss_pred ccccccccccccchhhhhcCc---HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHH
Q psy10290 12 SLYARASTTLSVGGLRQQFSL---RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQ 87 (128)
Q Consensus 12 ~~~~~gaS~~~~g~~~~~~~~---~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~ 87 (128)
+.+|.++|++|+|+++..+.. ....+++..+.+.|.++.++++ +.|..+|.|.++ ++++.+.+++.++
T Consensus 38 ~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq~~--------~~f~~~g~l~vA~~e~e~~~L~~l~~ 109 (429)
T COG0579 38 DGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQLG--------IPFINCGKLSVATGEEEVERLEKLYE 109 (429)
T ss_pred CccccccccCcccceeccccCCCcchhhHHHHHHHHHHHHHHHHhC--------CcccccCeEEEEEChHHHHHHHHHHH
Confidence 589999999999999875432 2368899999999999999987 468888999999 9999999999999
Q ss_pred HHHHcCCC-cceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 88 LQKELGAK-NVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 88 ~~~~~G~~-~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
...++|++ .+.+|++++++++|.++ ++..+|++.|..
T Consensus 110 ~~~~ngv~~~~~ld~~~i~~~eP~l~-~~~~aal~~p~~ 147 (429)
T COG0579 110 RGKANGVFDLEILDKEEIKELEPLLN-EGAVAALLVPSG 147 (429)
T ss_pred HHhhCCCcceeecCHHHHHhhCcccc-ccceeeEEcCCC
Confidence 99999999 99999999999999998 578899998764
No 13
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.38 E-value=3.8e-12 Score=99.22 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=85.4
Q ss_pred eeeec-ccccccccccccchhhhhc----CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQF----SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~----~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~ 80 (128)
|+|+| .++++|+|++|+|+++..+ .+....+++..+.++|.++..+ .+.++|.|+++ ++++..
T Consensus 11 V~llEk~d~~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~-----------~~~~~g~L~va~~~~~~~ 79 (516)
T TIGR03377 11 CILLEQGDLAHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH-----------CVEDTGGLFITLPEDDLE 79 (516)
T ss_pred EEEEeCCCcccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH-----------hccCCCceEEecCcccHH
Confidence 45555 6899999999999997542 3344566777778888777532 36789999999 888878
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 123 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p 123 (128)
.+++.+..++..|++.++++++++++++|.++ +++.+|++.|
T Consensus 80 ~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~-~~~~ga~~~~ 121 (516)
T TIGR03377 80 FQKQFLAACREAGIPAEEIDPAEALRLEPNLN-PDLIGAVKVP 121 (516)
T ss_pred HHHHHHHHHHHCCCCceEECHHHHHHHCCCCC-hhheEEEEeC
Confidence 88888888889999999999999999999998 4788999997
No 14
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.38 E-value=5.5e-12 Score=94.14 Aligned_cols=112 Identities=15% Similarity=0.260 Sum_probs=91.1
Q ss_pred eeeecc-ccc--ccccccccchhhhhcC-cHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLVS-LYA--RASTTLSVGGLRQQFS-LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~~-~~~--~gaS~~~~g~~~~~~~-~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|+++|. ..+ .++|+.+.++++..+. .+.+.+|+.+|.++|+++.+.++ .++ |+++|+|+++ ++. +.
T Consensus 29 V~lie~~~~~~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~------~~~-~~~~G~l~~~~~~~--~~ 99 (376)
T PRK11259 29 VLGLDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERESG------EPL-FVRTGVLNLGPADS--DF 99 (376)
T ss_pred EEEEecccCCCCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHHHHHHHhC------Ccc-EEEECCEEEcCCCC--HH
Confidence 566664 443 5788888888887665 35678999999999999998877 665 8999999998 543 45
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+++..+.+++.|++.++++++++++++|.++.+...+|+|.|.+ ||
T Consensus 100 ~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~~~~~-g~ 145 (376)
T PRK11259 100 LANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALFEPDG-GF 145 (376)
T ss_pred HHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEEcCCC-CE
Confidence 67777788899999999999999999999986667889999876 76
No 15
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.27 E-value=3.9e-11 Score=94.26 Aligned_cols=106 Identities=19% Similarity=0.121 Sum_probs=83.8
Q ss_pred eeeec-ccccccccccccchhhhhcC----cHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFS----LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~----~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~ 80 (128)
|+|+| +++++|+|++|+|+++..+. +....+++.++.++|.++..+ .+.++|.|.++ ++++..
T Consensus 32 V~LlEk~d~~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~~~l~~~a~~-----------~~~~~g~l~~~~~~~~~~ 100 (546)
T PRK11101 32 CILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARH-----------CVEPTDGLFITLPEDDLA 100 (546)
T ss_pred EEEEECCCCCCCcccccccceeccchhcccCHHHHHHHHHHHHHHHHhchH-----------hhcccCCceEEeccccHH
Confidence 56667 57899999999999986322 334556666777777777643 25678888888 777777
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE 124 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~ 124 (128)
.+++.++.+...|+++++|+++++++++|.|+ +++.+|++.|+
T Consensus 101 ~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~-~~~~ga~~~~d 143 (546)
T PRK11101 101 FQATFIRACEEAGIEAEAIDPQQALILEPAVN-PALIGAVKVPD 143 (546)
T ss_pred HHHHHHHHHHHcCCCcEEECHHHHHHhCCCcC-ccceEEEEecC
Confidence 77778888889999999999999999999998 57899999983
No 16
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=99.21 E-value=4.1e-11 Score=89.98 Aligned_cols=108 Identities=18% Similarity=0.119 Sum_probs=80.1
Q ss_pred eeeecc--cccccccccccchhhhhcCc--HHHHHHH----HHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chh
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSL--RENIEMS----LFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD 77 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~--~~~~~la----~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~ 77 (128)
|+|+|. .++.|+|++|+|++++.+.. ....++. .++.++|+++.+. + .++.|+++|.|+++ +++
T Consensus 12 V~vlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~~-~------~~~~~~~~G~L~~a~~~~ 84 (381)
T TIGR03197 12 VTLYEQDEAPAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAEA-G------FPFDHEWCGVLQLAYDEK 84 (381)
T ss_pred eEEEeCCCcccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHhc-C------CCcccccCceEEecCChH
Confidence 677775 47999999999999876542 2344554 4678888887653 4 67889999999999 877
Q ss_pred hHHHHHHHHHHHHHcCCC---cceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 78 GAATLEKNHQLQKELGAK---NVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 78 ~~~~l~~~~~~~~~~G~~---~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+.+.+++.. ++.|++ +++++++++.+++|. +.+.+|+|.|.+ |+
T Consensus 85 ~~~~l~~~~---~~~~~~~~~~~~l~~~e~~~~~~~---~~~~gal~~~~~-g~ 131 (381)
T TIGR03197 85 EAERLQKLL---EQLGFPEELARWVDAEQASQLAGI---PLPYGGLFFPQG-GW 131 (381)
T ss_pred HHHHHHHHH---HhcCCCHHHheeCCHHHHHHhcCC---CCCCCceEeCCC-cc
Confidence 766665543 345665 458999999999873 356789999887 64
No 17
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.19 E-value=1.8e-10 Score=89.48 Aligned_cols=116 Identities=13% Similarity=0.086 Sum_probs=93.8
Q ss_pred eeeeeec-cccccccccc-------ccchhhhhcCcHH---HHHHH---------HHHHHHHHHHHHh--hcccCCCCCC
Q psy10290 5 HILASLV-SLYARASTTL-------SVGGLRQQFSLRE---NIEMS---------LFGAEFLRNIKHH--CHVIGEDEPD 62 (128)
Q Consensus 5 ~~~~~~~-~~~~~gaS~~-------~~g~~~~~~~~~~---~~~la---------~~s~~~~~~~~~~--~~~~~~~~~~ 62 (128)
.|+.+.. ..+|.+||++ ++|++...|+.+. ...++ ..|.++|..+.+. +. ...
T Consensus 33 ~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i~~~~~~s~~f~~~~~~~~~~~-----~~~ 107 (497)
T PRK13339 33 NIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEINEQFEISKQFWGHLVKSGTIG-----NPR 107 (497)
T ss_pred eEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHHHHHHHHHHHHHHhhhhhcCCC-----ChH
Confidence 3443333 4799999999 9999999998765 56666 8899999988863 22 001
Q ss_pred cceeecceEEEe-ChhhHHHHHHHHHHHHHcCC--Cccee-CHhhHHHhCCCCCcC----CceeEEecCCC
Q psy10290 63 VNFTPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVLL-GPEQLKAKFPWLNTD----DIALACLGLEK 125 (128)
Q Consensus 63 ~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~--~~e~l-~~~~~~~~~P~l~~~----~~~ga~~~p~d 125 (128)
-.++++|.|.++ .+++.+.+++.++.++.++. .++++ |++++++++|.+... ...+|+|.|++
T Consensus 108 ~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l~~~r~~~~~~~Al~~p~~ 178 (497)
T PRK13339 108 EFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLMMPGREANEIMAASKIDEG 178 (497)
T ss_pred hhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcccCCCCCCcceeEEECCCc
Confidence 238899999999 99999999999999999998 99999 899999999998743 56889999876
No 18
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.15 E-value=1e-09 Score=85.41 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=87.0
Q ss_pred eeeecc--ccccccc--ccccchhh-----hhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Ch
Q psy10290 7 LASLVS--LYARAST--TLSVGGLR-----QQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQ 76 (128)
Q Consensus 7 ~~~~~~--~~~~gaS--~~~~g~~~-----~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~ 76 (128)
|+|+|. .+|+++| +.|+|.+. ..| .+...+++.++.++|+++.+++. ... .+..+.++|.|.++ ++
T Consensus 73 V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y-~~~kA~~~~~~~~~~~~~~~~L~--~~~-~~~~~~~~G~l~va~~e 148 (497)
T PTZ00383 73 IALIERRSDFALVASHGKNNSQTIHCGDIETNY-TLEKARKVKRQADMLRNYLTKLP--PSE-RDSIIFKMQKMVLGVGE 148 (497)
T ss_pred EEEEecCcchhhcccCCCCCCccccceeehhcC-CHHHHHHHHHHHHHHHHHHHHhc--ccc-cccceeeCCEEEEEECH
Confidence 566664 4788777 44555443 233 34467778888999999887754 211 23457899999999 99
Q ss_pred hhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCc-------CCceeEEecCCC
Q psy10290 77 DGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT-------DDIALACLGLEK 125 (128)
Q Consensus 77 ~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~-------~~~~ga~~~p~d 125 (128)
++.+.+++.++.++..+.++++++++++++++|.+.. +...+|+|.|++
T Consensus 149 ~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~~Al~~p~~ 204 (497)
T PTZ00383 149 KECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPLAALYVPNE 204 (497)
T ss_pred HHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccceEEEEeCCC
Confidence 9999999999988888889999999999999998742 357789999875
No 19
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.14 E-value=4.1e-10 Score=87.34 Aligned_cols=118 Identities=14% Similarity=0.110 Sum_probs=84.9
Q ss_pred eeeeecc--ccccccccc--ccchh-----hhhcCcHH---HH---------HHHHHHHHHHHHHHHhhcccCCCCCCcc
Q psy10290 6 ILASLVS--LYARASTTL--SVGGL-----RQQFSLRE---NI---------EMSLFGAEFLRNIKHHCHVIGEDEPDVN 64 (128)
Q Consensus 6 ~~~~~~~--~~~~gaS~~--~~g~~-----~~~~~~~~---~~---------~la~~s~~~~~~~~~~~~~~~~~~~~~~ 64 (128)
-|+|+|. .+|.++|++ |+|.+ ...|..+. .. +....+.++|..+.+. ++ ...+..
T Consensus 27 ~V~VlEk~~~~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~~a~~~~~~~~~s~~~~~~l~~~-g~---~~~~~~ 102 (483)
T TIGR01320 27 SITLIERLDAVAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIAKAVGINEQFQVSRQFWAHLVEE-GI---LTDPKS 102 (483)
T ss_pred eEEEEEcCCcchhhhCCCCCcccccccchhhccCCCccCCCchhHHHHHHHHHHHHHHHHHHHHHHHc-CC---CCChhh
Confidence 4677774 589999994 85543 33444321 12 3445789999888865 20 001123
Q ss_pred -eeecceEEEe-ChhhHHHHHHHHHHHHHcCC--Ccce-eCHhhHHHhCCCCCcC----CceeEEecCCCCCC
Q psy10290 65 -FTPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVL-LGPEQLKAKFPWLNTD----DIALACLGLEKEGW 128 (128)
Q Consensus 65 -~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~--~~e~-l~~~~~~~~~P~l~~~----~~~ga~~~p~d~g~ 128 (128)
++++|.|.++ ++++.+.+++.++.+++.|+ .+++ ++++++++++|.+... ...+|+|.|++ |+
T Consensus 103 ~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~~~eP~l~~~r~~~~~~gAl~~p~~-g~ 174 (483)
T TIGR01320 103 FINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFAEWLPLMAAGRDFSEPVAANWAAEG-TD 174 (483)
T ss_pred hccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHHHhCCCcccCCCCCCceEEEEeCCC-EE
Confidence 4579999999 99999999999999999987 4675 7999999999998732 47889999887 64
No 20
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.08 E-value=3.8e-10 Score=90.46 Aligned_cols=110 Identities=15% Similarity=0.080 Sum_probs=83.8
Q ss_pred eeeecc--cccccccccccchhhhhcCc--HHHHHHHH----HHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chh
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSL--RENIEMSL----FGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD 77 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~--~~~~~la~----~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~ 77 (128)
|+|+|. .++.|+|++|+|++++.... ....++.. ++.++|+++. +.+ .++.++++|.|.++ +++
T Consensus 286 V~VlE~~~~~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a~~~~~~l~-~~~------~~~~~~~~G~l~~a~~~~ 358 (662)
T PRK01747 286 VTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDALP-AAG------VAFDHDWCGVLQLAWDEK 358 (662)
T ss_pred EEEEecCCCccccCCcCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHH-hcC------CCCCCCCCceEEeecCch
Confidence 677775 47999999999999887643 23455543 6889999887 455 67789999999999 887
Q ss_pred hHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 78 GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 78 ~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+.+.+++..+.... +..+++++++++.+++|. +...+|+|.|++ ||
T Consensus 359 ~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~---~~~~~g~~~p~~-G~ 404 (662)
T PRK01747 359 SAEKIAKMLALGLP-AELARALDAEEAEELAGL---PVPCGGIFYPQG-GW 404 (662)
T ss_pred HHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCC---CCCCCcEEeCCC-Ce
Confidence 77777766654433 456789999999999873 356789999887 86
No 21
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=2.5e-09 Score=83.21 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=83.5
Q ss_pred eeeeecc--cccccccc--cccchhhh-----hcCcH-----HHHHHH-------HHHHHHHHHHHHhhcccCCCCCCcc
Q psy10290 6 ILASLVS--LYARASTT--LSVGGLRQ-----QFSLR-----ENIEMS-------LFGAEFLRNIKHHCHVIGEDEPDVN 64 (128)
Q Consensus 6 ~~~~~~~--~~~~gaS~--~~~g~~~~-----~~~~~-----~~~~la-------~~s~~~~~~~~~~~~~~~~~~~~~~ 64 (128)
-|+|+|. .+|.++|+ +|+|.++. .|..+ ...+.+ ..|+++|..+.+. ++.. .+..
T Consensus 32 ~V~VlEk~~~~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~~~~a~~~~~~~~~s~~~~~~l~~~-g~~~---~~~~ 107 (494)
T PRK05257 32 SITMFERLDGVALESSNGWNNAGTGHSALCELNYTPEKADGSIDISKAVKINEQFQISRQFWAYLVEK-GVLP---DPRS 107 (494)
T ss_pred eEEEEEcCCchhhhcCCCcCccccccccchhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHc-CCCC---Cccc
Confidence 3666773 46889988 68776644 34331 112222 6788999888764 3100 0122
Q ss_pred -eeecceEEEe-ChhhHHHHHHHHHHHHHcCC--Cccee-CHhhHHHhCCCCC----cCCceeEEecCCC
Q psy10290 65 -FTPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVLL-GPEQLKAKFPWLN----TDDIALACLGLEK 125 (128)
Q Consensus 65 -~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~--~~e~l-~~~~~~~~~P~l~----~~~~~ga~~~p~d 125 (128)
++++|.|.++ ++++.+.+++.++.++++|+ .++++ +++++++++|.+. .++..+|+|+|.+
T Consensus 108 ~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~el~e~eP~l~~~r~~~~~~~Al~~p~~ 177 (494)
T PRK05257 108 FINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQIKEWAPLMMEGRDPSQKVAATRIEIG 177 (494)
T ss_pred ccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHHHHHhCcccccCCCCCcceeEEEcCCc
Confidence 4899999999 99999999999999999997 56774 9999999999884 2467889999876
No 22
>KOG2820|consensus
Probab=99.01 E-value=1.8e-09 Score=79.42 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=88.2
Q ss_pred eeeeecccccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEeChhhHHHHHHH
Q psy10290 6 ILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKN 85 (128)
Q Consensus 6 ~~~~~~~~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a~~~~~~~l~~~ 85 (128)
++++++..+-.|||...+.|+|+.|.+..|..|+.++++.|+++....+ .. ...++|.+.+. ..+-..+...
T Consensus 35 lLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g------~~-~~~~t~~~~~~-~~e~~~~~sv 106 (399)
T KOG2820|consen 35 LLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESG------VK-LHCGTGLLISG-DPERQRLDSV 106 (399)
T ss_pred EEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhc------ee-ecccceeeecC-cHHHHHHHHH
Confidence 3445555778999999999999999999999999999999999998776 32 33455555555 3333567778
Q ss_pred HHHHHHcCCCcceeCHhhHHHhCC-CCCcCCceeEEecCCCCCC
Q psy10290 86 HQLQKELGAKNVLLGPEQLKAKFP-WLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 86 ~~~~~~~G~~~e~l~~~~~~~~~P-~l~~~~~~ga~~~p~d~g~ 128 (128)
...++..++..+.++.+++++++| .+..++--.|+.++.. ||
T Consensus 107 ~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~g-Gv 149 (399)
T KOG2820|consen 107 AANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESG-GV 149 (399)
T ss_pred HHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccc-cE
Confidence 888889999999999999999999 6655554456666554 65
No 23
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.99 E-value=2.4e-09 Score=80.14 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=94.8
Q ss_pred eeeec-ccccccccccccchhhhhcCcH----HHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chh--h
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFSLR----ENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD--G 78 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~~~----~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~--~ 78 (128)
|+++| ..++.|+|++|++.+...+... ....++..++.+|+.+.+..+ ....|.++|.+.+. .+. .
T Consensus 30 V~vie~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~ 103 (387)
T COG0665 30 VTVLEAGEAGGGAAGRNAGGILAPWASPGGELEVRPLADLSLALWRELSEELG------TGAGLRRRGLLDLAAREGLKG 103 (387)
T ss_pred EEEEecCccCCcchhcchhhhccccccCCccchhhhhhHHHHHHHHHHHHHhC------cchhcchhhhhhhhhccccch
Confidence 56666 5678899999999998877653 478899999999999999887 55679999999999 665 3
Q ss_pred HHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 79 AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 79 ~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
.....+..+..++.....++++..++.+..|.+..+.+.++++.|.+ ||
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~~~~~~-~~ 152 (387)
T COG0665 104 LAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGLFDPTG-GH 152 (387)
T ss_pred HHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeEecCCC-Cc
Confidence 45566677777777776689999999999999997668999999887 65
No 24
>KOG2665|consensus
Probab=98.58 E-value=6.3e-08 Score=71.14 Aligned_cols=108 Identities=14% Similarity=0.146 Sum_probs=88.3
Q ss_pred eeeec--ccccccccccccchhhh--hcCcH-HHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290 7 LASLV--SLYARASTTLSVGGLRQ--QFSLR-ENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~--~~~~~gaS~~~~g~~~~--~~~~~-~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~ 80 (128)
|+++| ..++-..||+|+|.++. .|... .-.+|+.+++++.=+...+.+ +.|.++|-|.++ .+++..
T Consensus 76 V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc~e~~--------IpyKk~GKLIVAt~~~Eip 147 (453)
T KOG2665|consen 76 VAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYCDEKK--------IPYKKTGKLIVATESEEIP 147 (453)
T ss_pred EEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHhhhcC--------CChhhcceEEEEeChhhcc
Confidence 45555 47899999999999987 33333 358899999999888887766 479999999999 889999
Q ss_pred HHHHHHHHHHHcCCC-cceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 81 TLEKNHQLQKELGAK-NVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~-~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
.+.........+|++ .++++..++.+++|+.+ -..|+++|+.
T Consensus 148 rLd~L~~~g~qN~v~glrmieg~ei~~~EP~cr---gvkAl~sPht 190 (453)
T KOG2665|consen 148 RLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCR---GVKALLSPHT 190 (453)
T ss_pred hHHHHHHhhhhcCCCCeeeeccchhhhcChhhh---hhhhhcCCCc
Confidence 999988888888875 88999999999999765 3347888775
No 25
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.82 E-value=0.00013 Score=58.61 Aligned_cols=112 Identities=7% Similarity=-0.032 Sum_probs=61.2
Q ss_pred eeeec-ccccccccccccchhhhhcC--c-------HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-C
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFS--L-------RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-S 75 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~--~-------~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~ 75 (128)
|+++| .++++|+|++|+++++.... . +...+++.++++.++.+.+... ...++-+.+.-. +
T Consensus 97 V~LvE~~d~a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l~~e~l~er~~l~~~ap--------~l~~~l~~~~p~~~ 168 (627)
T PLN02464 97 VGLVEREDFSSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKLVFHALEERKQLIENAP--------HLCHALPIMTPCYD 168 (627)
T ss_pred EEEEeccccCCCcccchhhhhhhHHHHHHHHhhCCCccceeehHHHHHHHHHHHhhCh--------hhccccceeeeccc
Confidence 66677 57999999999988754311 1 1134567777766655543321 111222333222 2
Q ss_pred hhhHHHHH---HHHHHH-HHcCC-CcceeCHhhHHHhCCCCCcC----CceeEEecCCCCCC
Q psy10290 76 QDGAATLE---KNHQLQ-KELGA-KNVLLGPEQLKAKFPWLNTD----DIALACLGLEKEGW 128 (128)
Q Consensus 76 ~~~~~~l~---~~~~~~-~~~G~-~~e~l~~~~~~~~~P~l~~~----~~~ga~~~p~d~g~ 128 (128)
..+...+. ..++.. ...+. +.++++++++++++|.|+.+ .+.++++ +.| |+
T Consensus 169 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L~~~~~~~~l~ga~~-~~D-g~ 228 (627)
T PLN02464 169 WFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTLAKKGKDGSLKGTVV-YYD-GQ 228 (627)
T ss_pred hhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCCCccccccceeEEEE-ecC-cE
Confidence 21111111 111111 12233 36899999999999999854 3676664 455 64
No 26
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.77 E-value=0.00016 Score=56.85 Aligned_cols=110 Identities=13% Similarity=0.036 Sum_probs=73.7
Q ss_pred eeeec-ccccccccccccchhhh--hcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-C-hhhHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQ--QFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-S-QDGAAT 81 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~--~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~-~~~~~~ 81 (128)
|+++| .++++|+|++|.++|+. +|-......|+++++.-=+-+.+- . +....+.+.+... + ..+...
T Consensus 38 v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~Er~vL~~~-A-------PH~v~p~~~~lp~~~~~~~~~~ 109 (532)
T COG0578 38 VALVEKGDLASGTSSRSTKLIHGGLRYLEQYEFSLVREALAEREVLLRI-A-------PHLVEPLPFLLPHLPGLRDAWL 109 (532)
T ss_pred EEEEecCcccCcccCccccCccchhhhhhhcchHHHHHHHHHHHHHHHh-C-------ccccccCcCeEeccCCcccchH
Confidence 56777 58999999999999975 444444566777777665554432 2 2345677777777 5 133334
Q ss_pred HHHHHHHHHH-cCC-----CcceeCHhhHHHhCCCCCcCCceeEEecCC
Q psy10290 82 LEKNHQLQKE-LGA-----KNVLLGPEQLKAKFPWLNTDDIALACLGLE 124 (128)
Q Consensus 82 l~~~~~~~~~-~G~-----~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~ 124 (128)
+....-.... .|+ +.+.+++++...+.|.|+.+...||+++++
T Consensus 110 ~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D 158 (532)
T COG0578 110 IRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPD 158 (532)
T ss_pred HHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcc
Confidence 4443333333 444 578899999999999999777777887754
No 27
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.14 E-value=0.0016 Score=51.11 Aligned_cols=107 Identities=9% Similarity=-0.063 Sum_probs=64.3
Q ss_pred eeeec-ccccccccccccchhhhh--cCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQ--FSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 82 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~--~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l 82 (128)
|+++| .++++|+|++|+|+++.. |......+|..+++..++.+.+... . ...+.+ +.+. ++.+...+
T Consensus 32 V~LlEk~d~~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e~~~l~~~ap-------~-l~~~~~-~~~~~~~~~~~~~ 102 (502)
T PRK13369 32 VLLCEKDDLAQGTSSRSGKLVHGGLRYLEYYEFRLVREALIEREVLLAAAP-------H-IIWPMR-FVLPHSPEDRPAW 102 (502)
T ss_pred EEEEECCCCCCCCchhhhhhHHHHHHHHHhccHHHHHHHHHHHHHHHHhCC-------c-cccccc-eEEecccccccHH
Confidence 55566 589999999999999753 3333468899999988887775422 1 234455 4444 44332222
Q ss_pred H--HHHHHHHHcC----C-CcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 83 E--KNHQLQKELG----A-KNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 83 ~--~~~~~~~~~G----~-~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
. ........++ + +.+.++.+++.+.+| ++ +.+.+++.. .|
T Consensus 103 ~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l~-~~~~~a~~~-~d 149 (502)
T PRK13369 103 LVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-LK-PEYTKGFEY-SD 149 (502)
T ss_pred HHHHHHHHHHhccCCCCCCcceEechhhccccCC-ch-HhcCEEEEE-cC
Confidence 2 1112222222 3 367888888877777 55 456666543 44
No 28
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=96.52 E-value=0.014 Score=46.00 Aligned_cols=47 Identities=6% Similarity=-0.121 Sum_probs=35.5
Q ss_pred eeeec-ccccccccccccchhhhhc--CcHHHHHHHHHHHHHHHHHHHhh
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQF--SLRENIEMSLFGAEFLRNIKHHC 53 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~--~~~~~~~la~~s~~~~~~~~~~~ 53 (128)
|+++| +++++|+|++|+++++... ......+|..++++.++.+.+..
T Consensus 32 V~LvEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~er~~l~~~~ 81 (508)
T PRK12266 32 VLLCEQDDLASATSSASTKLIHGGLRYLEHYEFRLVREALAEREVLLRMA 81 (508)
T ss_pred EEEEecCCCCCCccccccccccchHHHhhhccHHHHHHHHHHHHHHHHhC
Confidence 56667 5899999999999887543 23336789999998888776543
No 29
>KOG2852|consensus
Probab=95.26 E-value=0.022 Score=42.06 Aligned_cols=66 Identities=9% Similarity=0.059 Sum_probs=49.1
Q ss_pred eeeeeecc-cccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe
Q psy10290 5 HILASLVS-LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA 74 (128)
Q Consensus 5 ~~~~~~~~-~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a 74 (128)
+-+..+|+ .++.||||.++|++...-.......|+..|.++++++.++++ ... .-.|+.--.+.+.
T Consensus 40 ~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd--Gvn--nwgYRaltTws~k 106 (380)
T KOG2852|consen 40 LDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD--GVN--NWGYRALTTWSCK 106 (380)
T ss_pred eeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc--Ccc--cccceeeeEEEEE
Confidence 34566675 799999999999998444455578899999999999999987 111 2456666666655
No 30
>KOG0042|consensus
Probab=92.09 E-value=0.17 Score=40.40 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.1
Q ss_pred CcceeCHhhHHHhCCCCCcCCceeEEec
Q psy10290 95 KNVLLGPEQLKAKFPWLNTDDIALACLG 122 (128)
Q Consensus 95 ~~e~l~~~~~~~~~P~l~~~~~~ga~~~ 122 (128)
...++++++.-+++|.|+.+..+|++.+
T Consensus 189 ~S~~lSk~~alE~fPmL~~~~L~Ga~VY 216 (680)
T KOG0042|consen 189 SSYFLSKKEALEIFPMLRKDNLKGAMVY 216 (680)
T ss_pred cceeecHHHHHHhCccccccCceeEEEE
Confidence 3578999999999999998889998655
No 31
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=60.81 E-value=20 Score=20.16 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=30.8
Q ss_pred eEEEeChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCcee
Q psy10290 70 YLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIAL 118 (128)
Q Consensus 70 ~L~~a~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~g 118 (128)
.|++......+.+....+.+.+.|+++..++.+.+.++...-+.+++..
T Consensus 20 ~l~~~~~~~~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~~~~hQGv~a 68 (76)
T PF08032_consen 20 KLFVTEEKADKRIKEILKLAKKKGIPVYEVSKKVLDKLSDTENHQGVVA 68 (76)
T ss_dssp EEEEETT---CCTHHHHHHHHHCT-EEEEE-HHHHHHCTTTSS-TTEEE
T ss_pred EEEEEcCccchhHHHHHHHHHHcCCeEEEeCHHHHHHHcCCCCCCeEEE
Confidence 4455422222335677777888999999999999998887666556663
No 32
>KOG3363|consensus
Probab=53.52 E-value=27 Score=23.75 Aligned_cols=81 Identities=17% Similarity=0.237 Sum_probs=55.7
Q ss_pred hcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe--ChhhHHHHH-HHHHHHHHcCCCcceeCHhhHH
Q psy10290 29 QFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA--SQDGAATLE-KNHQLQKELGAKNVLLGPEQLK 105 (128)
Q Consensus 29 ~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a--~~~~~~~l~-~~~~~~~~~G~~~e~l~~~~~~ 105 (128)
.|..+....+...|+.+|..+... +++ |.+. +.+.-+.+. +..+..+++++..|+++.++..
T Consensus 88 SW~v~~fedIt~dSLslF~tlePk--------idl-------LIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~ 152 (196)
T KOG3363|consen 88 SWSVRTFEDITTDSLSLFQTLEPK--------IDL-------LIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDTENAA 152 (196)
T ss_pred eccCCChhhcCcchHhHhhhcCCC--------ccE-------EEEecCCcCCchhcCHHHHHHHHHhCcceEEecchhhh
Confidence 334445677888899999877654 333 3333 444444454 5567789999999999999998
Q ss_pred HhCCCCCcC-CceeEEecCC
Q psy10290 106 AKFPWLNTD-DIALACLGLE 124 (128)
Q Consensus 106 ~~~P~l~~~-~~~ga~~~p~ 124 (128)
.-+-.|+.+ .++++...|.
T Consensus 153 aTfNfLNaEgR~VaaAL~Pp 172 (196)
T KOG3363|consen 153 ATFNFLNAEGRYVAAALLPP 172 (196)
T ss_pred hHhhhccccccEEEEEecCC
Confidence 888888855 4666666654
No 33
>PF00585 Thr_dehydrat_C: C-terminal regulatory domain of Threonine dehydratase; InterPro: IPR001721 Threonine dehydratases including Serine/threonine dehydratase (see IPR001926 from INTERPRO) contain a common C-terminal region that may have a regulatory role. Some members contain two copies of this region [].; GO: 0004794 L-threonine ammonia-lyase activity, 0009097 isoleucine biosynthetic process; PDB: 1TDJ_A 3IAU_A.
Probab=52.38 E-value=16 Score=22.00 Aligned_cols=41 Identities=20% Similarity=0.102 Sum_probs=28.8
Q ss_pred ecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHh
Q psy10290 67 PNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAK 107 (128)
Q Consensus 67 ~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~ 107 (128)
..|.+.+. .-++.+.++...+.+++.|+++.-+|..++...
T Consensus 48 ~~a~vlvgi~v~~~~~~~~l~~~L~~~gy~~~dls~ne~~k~ 89 (91)
T PF00585_consen 48 DFARVLVGIEVPDAEDLEELIERLKALGYPYEDLSDNELAKL 89 (91)
T ss_dssp SCSEEEEEEE-SSTHHHHHHHHHHTSSS-EEECTTT-HHHHH
T ss_pred CeeeEEEEEEeCCHHHHHHHHHHHHHcCCCeEECCCCHHHHh
Confidence 45677777 444445578888999999999999999887654
No 34
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=52.30 E-value=76 Score=25.37 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCC--Cccee-CHhhHHHhCCCC
Q psy10290 40 LFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVLL-GPEQLKAKFPWL 111 (128)
Q Consensus 40 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~--~~e~l-~~~~~~~~~P~l 111 (128)
.-|+++|..+.+.-.+ ...+-..+++-.+-+. .+++.+.++++++.++.+-. .++.. +++++++..|.+
T Consensus 85 evsrqfWs~lv~~g~l---~~p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLv 157 (488)
T PF06039_consen 85 EVSRQFWSYLVENGIL---QNPESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLV 157 (488)
T ss_pred HHHHHHHHHHHHCCCC---CChHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCee
Confidence 4578899888765321 0012356788899999 89999999999999988543 45666 689999999965
No 35
>PF07867 DUF1654: Protein of unknown function (DUF1654); InterPro: IPR012449 This entry is represented by Bacteriophage F116 (Pseudomonas phage F116), Orf28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of proteins from the Pseudomonadaceae.
Probab=50.63 E-value=17 Score=21.13 Aligned_cols=33 Identities=12% Similarity=0.083 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe
Q psy10290 40 LFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA 74 (128)
Q Consensus 40 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a 74 (128)
-++.+-|..+.+.+. +..|+.+.|+..|.+.+.
T Consensus 34 ~e~~~~W~~vl~~i~--Etegv~v~~~dDGsv~i~ 66 (73)
T PF07867_consen 34 DESDEDWEQVLEEIA--ETEGVEVTFNDDGSVRIR 66 (73)
T ss_pred CCCHHHHHHHHHHHh--cCCCeEEEEcCCCeEEEE
Confidence 357788888888877 788899999999999987
No 36
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=48.04 E-value=29 Score=19.74 Aligned_cols=33 Identities=30% Similarity=0.402 Sum_probs=25.4
Q ss_pred eecceEEEe-ChhhHHHHHHHHHHHHHcCCCccee
Q psy10290 66 TPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLL 99 (128)
Q Consensus 66 ~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l 99 (128)
++.|.|.+. +-+ .+.+++..+.+++.|+.+|.|
T Consensus 43 ~~~G~l~l~l~g~-~~~~~~a~~~L~~~~v~vEvl 76 (76)
T PF09383_consen 43 TPFGILILELPGD-DEEIEKAIAYLREQGVEVEVL 76 (76)
T ss_dssp EEEEEEEEEEES--HHHHHHHHHHHHHTTEEEEEE
T ss_pred eeEEEEEEEEECC-HHHHHHHHHHHHHCCCeEEEC
Confidence 578999998 543 355888888999999888765
No 37
>COG4024 Uncharacterized protein conserved in archaea [Function unknown]
Probab=46.48 E-value=65 Score=22.35 Aligned_cols=65 Identities=25% Similarity=0.166 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCCCc------ceeCHhhHHHhCCCCC
Q psy10290 41 FGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKN------VLLGPEQLKAKFPWLN 112 (128)
Q Consensus 41 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~------e~l~~~~~~~~~P~l~ 112 (128)
...+..+.+-+.+|+.++++-+..---.|.|++. +......++ ..+++. -.|+++++++..|.+.
T Consensus 75 a~~e~l~~ILa~fGveee~~~~~~e~~~g~l~IV~n~~~~K~L~-------k~~v~a~~v~t~G~L~~eDmR~Inp~~P 146 (218)
T COG4024 75 ALDEILRSILALFGVEEETERDLDELFKGSLLIVVNGRERKALR-------KELVDAPIVQTGGPLVPEDMRKINPNLP 146 (218)
T ss_pred HHHHHHHHHHHHcCcchhccccHHHHhcCCEEEEEChHHHHHHH-------HhCCCCceeeeCCCCCHHHHHHhCCCCc
Confidence 7778888888888865555555444567899988 766555443 233321 2489999999999764
No 38
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.74 E-value=38 Score=20.89 Aligned_cols=25 Identities=12% Similarity=0.171 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCcceeecceE
Q psy10290 40 LFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYL 71 (128)
Q Consensus 40 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L 71 (128)
..++++.+++..+++ ++.|+++|.-
T Consensus 11 ~aAl~Li~~l~~~hg-------pvmFHQSGGC 35 (116)
T COG3564 11 PAALDLIAELQAEHG-------PVMFHQSGGC 35 (116)
T ss_pred HHHHHHHHHHHHhcC-------CEEEeccCCc
Confidence 467888999998886 6889998864
No 39
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=37.09 E-value=1.1e+02 Score=19.58 Aligned_cols=18 Identities=17% Similarity=0.361 Sum_probs=8.0
Q ss_pred HHHHHHHHHHcCCCccee
Q psy10290 82 LEKNHQLQKELGAKNVLL 99 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l 99 (128)
.++....++..|++..+|
T Consensus 13 ~~~v~~~L~~~~~ep~i~ 30 (125)
T PF10137_consen 13 AEAVERFLEKLGLEPIIW 30 (125)
T ss_pred HHHHHHHHHhCCCceEEe
Confidence 334444444455544444
No 40
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=35.43 E-value=93 Score=18.14 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=27.5
Q ss_pred cceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHh
Q psy10290 68 NGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAK 107 (128)
Q Consensus 68 ~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~ 107 (128)
.|.+.+. .=.+. ......+.+++.|++++.++..++...
T Consensus 40 ~a~vlvGi~~~~~-~~~~l~~~l~~~g~~~~dls~ne~~~~ 79 (81)
T cd04907 40 YGRVLVGIQVPDA-DLDELKERLDALGYPYQEETDNPAYKL 79 (81)
T ss_pred ceeEEEEEEeChH-HHHHHHHHHHHcCCCeEECCCCHHHHH
Confidence 4556666 32222 667778888999999999998886543
No 41
>PRK11118 putative monooxygenase; Provisional
Probab=33.09 E-value=1.2e+02 Score=18.85 Aligned_cols=63 Identities=14% Similarity=0.082 Sum_probs=36.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCC--CCCCcceeecceEEEe-ChhhHHHH-HHHHHHHHHcCCC
Q psy10290 32 LRENIEMSLFGAEFLRNIKHHCHVIGE--DEPDVNFTPNGYLFCA-SQDGAATL-EKNHQLQKELGAK 95 (128)
Q Consensus 32 ~~~~~~la~~s~~~~~~~~~~~~~~~~--~~~~~~~~~~G~L~~a-~~~~~~~l-~~~~~~~~~~G~~ 95 (128)
.|-...|+..-.++-+++.++-++.=- | .+-.-..-|.+|+. +++..+.. +.....++.+|++
T Consensus 13 GP~g~em~~~~~~LA~sI~~EpGliWKIWT-en~~t~eaGGiYlF~~e~~a~aYl~mH~aRL~~~Gv~ 79 (100)
T PRK11118 13 GPFGEEMAKALKPLAESINEEPGFIWKIWT-ENEKTQEAGGIYLFEDEASAEAYLEMHTARLKNFGVE 79 (100)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCCceEEEee-cCCCCcccceEEEECCHHHHHHHHHHHHHHHHhcCCC
Confidence 343455655555666666655441000 0 01123577999999 88776654 4555667788875
No 42
>PF11203 DUF2984: Protein of unknown function (DUF2984); InterPro: IPR021368 This entry represents the transmembrane protein EccE found in the Actinobacteria, which are part of type VII secretion system (T7SS) [].
Probab=30.93 E-value=91 Score=18.99 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWL 111 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l 111 (128)
..++....+++.|+...+|+++|+.+....+
T Consensus 40 a~~Rla~~L~~~G~~a~~l~a~el~~~~~~~ 70 (98)
T PF11203_consen 40 AARRLADRLREAGIRARVLTADELPAALAAL 70 (98)
T ss_pred HHHHHHHHHHHCCCCceecChhhhHHHHHHh
Confidence 3456777899999999999999988765433
No 43
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.94 E-value=1.2e+02 Score=17.63 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=27.8
Q ss_pred cceEEEe-Chhh-HHHHHHHHHHHHHcCCCcceeCHhhHHH
Q psy10290 68 NGYLFCA-SQDG-AATLEKNHQLQKELGAKNVLLGPEQLKA 106 (128)
Q Consensus 68 ~G~L~~a-~~~~-~~~l~~~~~~~~~~G~~~e~l~~~~~~~ 106 (128)
.+.+.+. .-++ .+..++..+.+++.|+.+..++..++..
T Consensus 39 ~~~v~i~ie~~~~~~~~~~i~~~L~~~G~~~~~~~~~~~~~ 79 (85)
T cd04906 39 DAHIFVGVSVANGAEELAELLEDLKSAGYEVVDLSDDELAK 79 (85)
T ss_pred eeEEEEEEEeCCcHHHHHHHHHHHHHCCCCeEECCCCHHHH
Confidence 4445554 3334 5677788888999999999988877653
No 44
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=28.58 E-value=1.7e+02 Score=18.93 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=28.2
Q ss_pred ceeecceEEEeChhhHHHHHHHHHH--HHHcCCC--cceeCHhhHHHh---CCCC
Q psy10290 64 NFTPNGYLFCASQDGAATLEKNHQL--QKELGAK--NVLLGPEQLKAK---FPWL 111 (128)
Q Consensus 64 ~~~~~G~L~~a~~~~~~~l~~~~~~--~~~~G~~--~e~l~~~~~~~~---~P~l 111 (128)
-|-++|.+.+.++.+.+.++..++. ...+|++ +-+.|.+++++. .|+.
T Consensus 38 Tyi~SGNvvf~~~~~~~~l~~~ie~~l~~~fG~~v~v~vrs~~el~~i~~~nPf~ 92 (137)
T PF08002_consen 38 TYIQSGNVVFESDRDPAELAAKIEKALEERFGFDVPVIVRSAEELRAIIAANPFP 92 (137)
T ss_dssp EETTTTEEEEEESS-HHHHHHHHHHHHHHH-TT---EEEEEHHHHHHHHTT--GG
T ss_pred EEEeeCCEEEecCCChHHHHHHHHHHHHHhcCCCeEEEEeeHHHHHHHHHHCCCc
Confidence 5789999999944444555554433 3447764 557788888764 4644
No 45
>PF08803 ydhR: Putative mono-oxygenase ydhR; InterPro: IPR014910 YdhR is a homodimeric protein that comprises of a central four-stranded beta sheet and four surrounding alpha helices []. It shows structural homology to the ActVA-Orf6 and YgiN proteins which indicates it could be a mono-oxygenase. ; PDB: 1WD6_B 2HIQ_B 2ASY_B.
Probab=27.64 E-value=1.4e+02 Score=18.41 Aligned_cols=64 Identities=13% Similarity=0.024 Sum_probs=34.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcccCCC-CCCcceeecceEEEe-ChhhHHHHH-HHHHHHHHcCCC
Q psy10290 32 LRENIEMSLFGAEFLRNIKHHCHVIGED-EPDVNFTPNGYLFCA-SQDGAATLE-KNHQLQKELGAK 95 (128)
Q Consensus 32 ~~~~~~la~~s~~~~~~~~~~~~~~~~~-~~~~~~~~~G~L~~a-~~~~~~~l~-~~~~~~~~~G~~ 95 (128)
.|....|+....++-+++.++-|+.--- -.+-.-..-|.+|+. +++..+... .....++.+|++
T Consensus 10 gPfg~em~~~~~~LA~sI~~ePGliwKiWten~~t~eaGGiYLFe~e~~A~aY~~~h~aRl~~~Gv~ 76 (97)
T PF08803_consen 10 GPFGEEMSKAFNDLAESINQEPGLIWKIWTENEETGEAGGIYLFEDEASAEAYLEMHTARLAAFGVT 76 (97)
T ss_dssp SS-HHHHHHHHHHHHHHHTTSTTEEEEEEEEETTTTEEEEEEEESSHHHHHHHHHHHHHHHGGGTSS
T ss_pred CCcHHHHHHHHHHHHHHHhhCCCeEEEEEEecCCCCccceEEEECCHHHHHHHHHHHHHHHHhcCcc
Confidence 3434556666666666666554310000 001122467999999 888766554 444556777764
No 46
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=27.20 E-value=9.4 Score=20.73 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=11.0
Q ss_pred eCHhhHHHhCCCCCcCCce
Q psy10290 99 LGPEQLKAKFPWLNTDDIA 117 (128)
Q Consensus 99 l~~~~~~~~~P~l~~~~~~ 117 (128)
.+++++.+.+|.|+...+.
T Consensus 32 ~s~eeI~~~yp~Lt~~~i~ 50 (56)
T PF04255_consen 32 ESPEEIAEDYPSLTLEDIR 50 (56)
T ss_dssp --HHHHHHHSTT--HHHHH
T ss_pred CCHHHHHHHCCCCCHHHHH
Confidence 4678888889887754444
No 47
>PF09286 Pro-kuma_activ: Pro-kumamolisin, activation domain ; InterPro: IPR015366 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found at the N terminus of peptidases belonging to MEROPS peptidase family S53 (sedolisin, clan SB). The domain adopts a ferredoxin-like fold, with an alpha+beta sandwich. Cleavage of the domain results in activation of the peptidase []. ; GO: 0008236 serine-type peptidase activity; PDB: 1T1E_A 3EDY_A 3EE6_A.
Probab=24.65 E-value=1.9e+02 Score=18.52 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=23.0
Q ss_pred eEEEe-ChhhHHHHHHHHHHHHHcCCC--cceeCHhhHHHhCC
Q psy10290 70 YLFCA-SQDGAATLEKNHQLQKELGAK--NVLLGPEQLKAKFP 109 (128)
Q Consensus 70 ~L~~a-~~~~~~~l~~~~~~~~~~G~~--~e~l~~~~~~~~~P 109 (128)
.+.++ .+.+.+.+++.+.....-+-+ -..|+++|+.+++.
T Consensus 16 ~~~i~L~~~n~~~L~~~l~~vsdP~s~~Ygk~Lt~~e~~~~~~ 58 (143)
T PF09286_consen 16 SVTIALKQRNLDALEQYLAEVSDPGSPNYGKYLTPEEFAALFA 58 (143)
T ss_dssp EEEEEE--TTHHHHHHHHHHHHTTTSTTTT----HHHHHHHHS
T ss_pred EEEEEEcCCCHHHHHHHHHhCcCCCCcccccCCCHHHHHHHHC
Confidence 55666 777777788777665553332 47899999998773
No 48
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=24.43 E-value=1.9e+02 Score=20.68 Aligned_cols=53 Identities=21% Similarity=0.226 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhH
Q psy10290 41 FGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQL 104 (128)
Q Consensus 41 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~ 104 (128)
.+.+.++++.+... -...+.|.+++. ...+. ....+.+++.|+...+++.+++
T Consensus 190 dgl~~~~~i~~~a~--------~~L~~gG~l~l~~~~~~~---~~v~~~l~~~g~~~~~~~~~~~ 243 (251)
T TIGR03704 190 DGLDVLRRVAAGAP--------DWLAPGGHLLVETSERQA---PLAVEAFARAGLIARVASSEEL 243 (251)
T ss_pred cHHHHHHHHHHHHH--------HhcCCCCEEEEEECcchH---HHHHHHHHHCCCCceeeEcccc
Confidence 45777788876644 257889999988 66544 3455566788999888887665
No 49
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.27 E-value=1.3e+02 Score=16.45 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKF 108 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~ 108 (128)
.++....+...|+.+.+++.++..--+
T Consensus 4 ~qegLr~L~~aG~~v~iM~~~eF~~CW 30 (55)
T PF05240_consen 4 YQEGLRRLCQAGAQVSIMTYSEFQYCW 30 (55)
T ss_dssp HHHHHHHHHHTT-EEEE--HHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEecCcHHHHHHH
Confidence 455666778899999999999976543
No 50
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.88 E-value=1.6e+02 Score=21.84 Aligned_cols=45 Identities=18% Similarity=0.206 Sum_probs=30.9
Q ss_pred eEEEe-ChhhHHHHHHHHHHHHHcCCCccee------CHhhHHHhCCCCCcC
Q psy10290 70 YLFCA-SQDGAATLEKNHQLQKELGAKNVLL------GPEQLKAKFPWLNTD 114 (128)
Q Consensus 70 ~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l------~~~~~~~~~P~l~~~ 114 (128)
.+.+. +++...+.+.....+.+.|+..++. +.+++.+..-.|+.+
T Consensus 37 ~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d 88 (296)
T PRK14188 37 VVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNAD 88 (296)
T ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34444 5566666777888899999987765 777777766556543
No 51
>PF05157 T2SE_Nter: Type II secretion system (T2SS), protein E, N-terminal domain; InterPro: IPR007831 This domain is found at the N terminus of members of the general secretory system II protein E. Proteins in this subfamily are typically involved in Type IV pilus biogenesis (e.g. Q9X4G8 from SWISSPROT), though some are involved in other processes; for instance aggregation in Myxococcus xanthus (e.g. Q9RF11 from SWISSPROT) [].; GO: 0005524 ATP binding, 0006810 transport; PDB: 2D27_A 2D28_C.
Probab=23.71 E-value=1.7e+02 Score=17.22 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=21.4
Q ss_pred eecceEEEe--ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHh
Q psy10290 66 TPNGYLFCA--SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAK 107 (128)
Q Consensus 66 ~~~G~L~~a--~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~ 107 (128)
...|.+.++ ++.+....+..........+...+.+++++.+.
T Consensus 55 ~~~~~l~va~~dP~~~~~~~~l~~~~~~~~i~~~la~~~~i~~~ 98 (109)
T PF05157_consen 55 QDDGTLVVAVADPLDPEALDELEFLLGKYPIEFVLATREDIDQL 98 (109)
T ss_dssp ECTTCEEEEES-TT-HHHHHHHHHHH-S--EEEEE--HHHHHHH
T ss_pred EECCEEEEEEcCCCCHHHHHHHHHHcCCCCeEEEEeCHHHHHHH
Confidence 345777777 555544444433333444777778899888765
No 52
>KOG4498|consensus
Probab=23.46 E-value=1.8e+02 Score=20.31 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=38.7
Q ss_pred ceeecceEEEeChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEec
Q psy10290 64 NFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLG 122 (128)
Q Consensus 64 ~~~~~G~L~~a~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~ 122 (128)
..++.|++.+- +..+.+......+.+.|+..-.+.+-+..+..+....+.+.+.+|.
T Consensus 57 ~vRrpgCvlCR--~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevyl 113 (197)
T KOG4498|consen 57 FVRRPGCVLCR--EEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYL 113 (197)
T ss_pred EeccCcEEEeH--HHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCcceeEEE
Confidence 45667766664 2234455556778899999888887666677776665567777774
No 53
>PF13587 DJ-1_PfpI_N: N-terminal domain of DJ-1_PfpI family; PDB: 1U9C_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A.
Probab=23.21 E-value=60 Score=16.19 Aligned_cols=24 Identities=25% Similarity=0.083 Sum_probs=12.4
Q ss_pred ceeeeeecccccccccccccchhh
Q psy10290 4 KHILASLVSLYARASTTLSVGGLR 27 (128)
Q Consensus 4 ~~~~~~~~~~~~~gaS~~~~g~~~ 27 (128)
|.|+.|+-+.--.+.+++..|+.-
T Consensus 1 kkiLiV~Ts~~~~~~~~~~TG~wl 24 (38)
T PF13587_consen 1 KKILIVVTSHDKLGDTGRPTGFWL 24 (38)
T ss_dssp SEEEEEE---SEECTTTEE--B-H
T ss_pred CeEEEEEcCcccccCCCCcceecc
Confidence 578888887544566777777753
No 54
>KOG3045|consensus
Probab=22.99 E-value=1.5e+02 Score=22.06 Aligned_cols=51 Identities=22% Similarity=0.305 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHHHHHHHHHcCCCcc
Q psy10290 38 MSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNV 97 (128)
Q Consensus 38 la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e 97 (128)
|++.+-++..=+.+... -+...|.|+++ -...+......++.+...|+...
T Consensus 236 LSLMgtn~~df~kEa~R---------iLk~gG~l~IAEv~SRf~dv~~f~r~l~~lGF~~~ 287 (325)
T KOG3045|consen 236 LSLMGTNLADFIKEANR---------ILKPGGLLYIAEVKSRFSDVKGFVRALTKLGFDVK 287 (325)
T ss_pred HhhhcccHHHHHHHHHH---------HhccCceEEEEehhhhcccHHHHHHHHHHcCCeee
Confidence 55566655554444444 46889999999 77778888889999999998654
No 55
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=22.80 E-value=1.4e+02 Score=20.83 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=21.9
Q ss_pred CCcceeecceEEEeChhhHHHHHHHHHHHHHcCCC
Q psy10290 61 PDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAK 95 (128)
Q Consensus 61 ~~~~~~~~G~L~~a~~~~~~~l~~~~~~~~~~G~~ 95 (128)
+.+..++.|.=+++++.+++...+.++.+++.|++
T Consensus 53 v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~Gad 87 (201)
T PF03932_consen 53 VHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGAD 87 (201)
T ss_dssp EEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-S
T ss_pred eEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCC
Confidence 34567887776666788888888888888888874
No 56
>KOG3923|consensus
Probab=22.71 E-value=2.4e+02 Score=21.40 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=50.1
Q ss_pred cccccccccchhhhhcC----cHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEeChhhHHHHHHHHHHHH
Q psy10290 15 ARASTTLSVGGLRQQFS----LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQK 90 (128)
Q Consensus 15 ~~gaS~~~~g~~~~~~~----~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a~~~~~~~l~~~~~~~~ 90 (128)
-.=+|...+|++++... +....+-.....+.|..+...-. ..++|+. --.|++...+ +.+.+....+.
T Consensus 45 e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k~tf~~l~~l~rs~~-a~~aGV~---l~sg~~ls~~----e~~~~~~~~w~ 116 (342)
T KOG3923|consen 45 EDTTSDVAAGLFRPDLSDGTPQEINRQWGKDTFNYLAHLARSEE-AGEAGVC---LVSGHILSDS----ESLDDQQRSWG 116 (342)
T ss_pred cccccccccceeecccCCCCcHHHHHHHHHHHHHHHHHHhcccc-ccccceE---EeeeeeeccC----CCchhhhhhHH
Confidence 44567788889887642 23356666666777766664211 1233331 1233333222 33455555666
Q ss_pred HcCCCcceeCHhhHHHhCCC
Q psy10290 91 ELGAKNVLLGPEQLKAKFPW 110 (128)
Q Consensus 91 ~~G~~~e~l~~~~~~~~~P~ 110 (128)
..=+.+..|+.+|+. .+|.
T Consensus 117 diV~~fr~l~e~EL~-~f~~ 135 (342)
T KOG3923|consen 117 DIVYGFRDLTERELL-GFPD 135 (342)
T ss_pred hhhhhhhcCCHHHhc-CCCC
Confidence 666778899999996 7764
No 57
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=22.63 E-value=1.3e+02 Score=17.01 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCce
Q psy10290 80 ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIA 117 (128)
Q Consensus 80 ~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ 117 (128)
..+-+.+....+.|.+..-++.+++++..|.+. +++.
T Consensus 23 ~iVg~~V~~a~~~~~~l~~l~~~~~~~~~~~~~-~~~~ 59 (70)
T PF14698_consen 23 HIVGRLVRLAEEEGKPLSELTLEELQEISPEFE-EDVR 59 (70)
T ss_dssp HHHHHHHHHHHHTTS-GGGS-HHHHHHH-TT---GGGG
T ss_pred HHHHHHHHHHHHcCCChhhCCHHHHHHHhHHhH-HHHH
Confidence 344566677788999999999999999998876 4554
No 58
>PRK13660 hypothetical protein; Provisional
Probab=22.43 E-value=1.2e+02 Score=20.82 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=23.6
Q ss_pred cceEEEeChhhHHHHHHHHHHHHHc----CCCcceeCHhhHHHh
Q psy10290 68 NGYLFCASQDGAATLEKNHQLQKEL----GAKNVLLGPEQLKAK 107 (128)
Q Consensus 68 ~G~L~~a~~~~~~~l~~~~~~~~~~----G~~~e~l~~~~~~~~ 107 (128)
.+.|.+.+++.-..-.-.++.+++. |+++..|+++++.+.
T Consensus 131 d~~i~~YD~e~~Ggt~y~~~~A~k~~~~~~y~i~~I~~~~l~~~ 174 (182)
T PRK13660 131 DGALLVYDEENEGSPKYFYEAAKKKQEKEDYPLDLITFDDLQEI 174 (182)
T ss_pred CeEEEEEcCCCCCChHHHHHHHHHhhhccCceEEEeCHHHHHHH
Confidence 3445555533212233344444444 999999999999765
No 59
>PF13280 WYL: WYL domain
Probab=22.43 E-value=1.3e+02 Score=19.13 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=29.0
Q ss_pred eecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhC
Q psy10290 66 TPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKF 108 (128)
Q Consensus 66 ~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~ 108 (128)
...|.+.+. +-.+. ......+..+|-.+++++|+.+++.+
T Consensus 124 ~~~~~~~~~~~~~~~---~~~~~~l~~~g~~v~Vl~P~~lr~~~ 164 (172)
T PF13280_consen 124 DDDGSIIVTFPVNDS---EELLRWLLSFGDHVEVLEPESLRQRL 164 (172)
T ss_pred ccceEEEEEEEEech---HHHHHHHHHhCCCEEEECCHHHHHHH
Confidence 356777766 54433 34566678899999999999998764
No 60
>PHA02552 4 head completion protein; Provisional
Probab=22.07 E-value=1.4e+02 Score=19.91 Aligned_cols=28 Identities=21% Similarity=0.268 Sum_probs=22.0
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFP 109 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P 109 (128)
+++-.+.+++.|....++|.++|+..++
T Consensus 120 ~~Aa~~~a~~~Gw~F~iiTE~~ir~~~~ 147 (151)
T PHA02552 120 WKAARALCEKKGWKFKIITEDELKKVFG 147 (151)
T ss_pred HHHHHHHHHHcCCEEEEEEHHHhhhhhC
Confidence 3444445677899999999999998876
No 61
>PHA03118 multifunctional expression regulator; Provisional
Probab=21.16 E-value=1e+02 Score=24.03 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=30.7
Q ss_pred ccccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHH
Q psy10290 12 SLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKH 51 (128)
Q Consensus 12 ~~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~ 51 (128)
+.+..|.|+.++|-+.+.-..-.+..|+.++.++|+.|..
T Consensus 245 gn~~~~~sW~~gg~f~~~~~rVSWetL~~~G~eLyrtFE~ 284 (474)
T PHA03118 245 GNIEEGDSWADGGCFPGIEENISWAELMLYGHELYQTFES 284 (474)
T ss_pred cchhcCcchhccCCCCCccccccHHHHHHHhHHHHHHHhh
Confidence 3467799999999876655555578888888888888863
No 62
>COG1397 DraG ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=93 Score=23.43 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.2
Q ss_pred HHHHcCCCcceeCHhhHHHhCC
Q psy10290 88 LQKELGAKNVLLGPEQLKAKFP 109 (128)
Q Consensus 88 ~~~~~G~~~e~l~~~~~~~~~P 109 (128)
.....|.|+|.++++++++.+.
T Consensus 17 ~GDAlG~pvE~~t~e~Ik~~yG 38 (314)
T COG1397 17 LGDALGMPVEFLTREEIKALYG 38 (314)
T ss_pred HHHHhCCCccccCHHHHHHHhC
Confidence 4567999999999999999775
No 63
>PF05861 PhnI: Bacterial phosphonate metabolism protein (PhnI); InterPro: IPR008773 This family consists of several proteobacterial phosphonate metabolism protein (PhnI) sequences. Bacteria that use phosphonates as a phosphorus source must be able to break the stable carbon-phosphorus bond. In Escherichia coli phosphonates are broken down by a C-P lyase that has a broad substrate specificity. The genes for phosphonate uptake and degradation in E. coli are organised in an operon of 14 genes, named phnC to phnP. Three gene products (PhnC, PhnD and PhnE) comprise a binding protein-dependent phosphonate transporter, which also transports phosphate, phosphite, and certain phosphate esters such as phosphoserine; two gene products (PhnF and PhnO) may have a role in gene regulation; and nine gene products (PhnG, PhnH, PhnI, PhnJ, PhnK, PhnL, PhnM, PhnN, and PhnP) probably comprise a membrane-associated C-P lyase enzyme complex [].; GO: 0015716 phosphonate transport
Probab=20.88 E-value=92 Score=23.81 Aligned_cols=54 Identities=9% Similarity=0.076 Sum_probs=35.8
Q ss_pred eEEEe-ChhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCc--eeEEecCC
Q psy10290 70 YLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDI--ALACLGLE 124 (128)
Q Consensus 70 ~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~--~ga~~~p~ 124 (128)
++-+. .++.++...+..+..+.-+-...-|+-+||.+..+.+- +.+ .|++|.|+
T Consensus 2 YVAVKGGe~AI~~A~~ll~~~Rrg~~~~~~l~~~qI~~ql~lav-drVMsEgsLYdp~ 58 (358)
T PF05861_consen 2 YVAVKGGEKAIENAHRLLAYERRGDPAVPELSVAQIEEQLRLAV-DRVMSEGSLYDPE 58 (358)
T ss_pred eeeeeccHHHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHHHHH-HHHhccccccCHH
Confidence 44455 56666666666666666666788999999999887443 332 46677653
No 64
>KOG3366|consensus
Probab=20.28 E-value=1.9e+02 Score=19.80 Aligned_cols=28 Identities=29% Similarity=0.273 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFP 109 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P 109 (128)
.+++..+..+.. .|++-+|.+++.+.+|
T Consensus 116 ~l~k~le~v~~~-~P~demT~ed~~ea~P 143 (172)
T KOG3366|consen 116 ELEKELEKVKSA-RPFDEMTMEDLNEAFP 143 (172)
T ss_pred HHHHHHHHHHhc-CCcccccHHHHHHhCc
Confidence 333333333333 5799999999999999
No 65
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=20.04 E-value=2e+02 Score=20.87 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=28.4
Q ss_pred CCcceeecceEEEeChhhHHHHHHHHHHHHHcCCC
Q psy10290 61 PDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAK 95 (128)
Q Consensus 61 ~~~~~~~~G~L~~a~~~~~~~l~~~~~~~~~~G~~ 95 (128)
+.+..++.|.-+++++.+++...+.++.+++.|++
T Consensus 54 v~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~Gad 88 (248)
T PRK11572 54 VHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFP 88 (248)
T ss_pred eEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 34677888888888888888899999999988864
No 66
>PF09830 ATP_transf: ATP adenylyltransferase; InterPro: IPR019200 Diadenosine 5',5'''-P-1,P-4-tetraphosphate (Ap4A) and related diadenosine oligoposphates such as Ap3A are important intracellular and extracellular signalling molecules in prokaryotes and eukaryotes []. They are implicated in the regulation of many vital celluar functions including stress response, cell division and apoptosis. Synthesis primarily occurs via aminoacyl-tRNA synthetases adding the AMP moiety of an aminoacyl-AMP to an acceptor nucleotide, and is an inevitable byproduct of protein synthesis. The concentration of these compounds must thus be controlled both to ensure the proper regulation of various celluar processes, but also to prevent their buildup to potentially toxic levels. This domain is found in a group of ATP adenylyltransferases found in bacteria and lower eukaryotes which catalyse the interconversion of Ap4A to ATP and ADP [, , ]. While these enzymes are thought to act primarily to break down Ap4A, there is evidence to suggest that in some circumstances they may also act in a biosynthetic role. Some variability in substrate range is apparent eg the cyanobacterial enzyme can also utilise Ap3A as a substrate, while the Saccharomyces enzymes apparently cannot.; GO: 0003877 ATP adenylyltransferase activity
Probab=20.03 E-value=1.8e+02 Score=16.11 Aligned_cols=28 Identities=21% Similarity=0.410 Sum_probs=15.4
Q ss_pred cceEEEeChhhHHHHHHH--HHHHHHcCCC
Q psy10290 68 NGYLFCASQDGAATLEKN--HQLQKELGAK 95 (128)
Q Consensus 68 ~G~L~~a~~~~~~~l~~~--~~~~~~~G~~ 95 (128)
.|++.+.++++.+.+++. .+.+++.|+|
T Consensus 33 ~G~llvk~~~~~~~~~~~gp~~iL~~vg~P 62 (62)
T PF09830_consen 33 AGMLLVKSEEELDWLKEDGPMKILREVGFP 62 (62)
T ss_pred eeeeeeCCHHHHHHHHHcCHHHHHHHhcCC
Confidence 466666677766666542 2445555443
Done!