Query psy10290
Match_columns 128
No_of_seqs 111 out of 1071
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 22:40:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10290.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10290hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y56_B Sarcosine oxidase; dehy 99.4 2.3E-12 7.8E-17 94.8 12.0 113 7-128 31-145 (382)
2 3nyc_A D-arginine dehydrogenas 99.4 8.3E-13 2.8E-17 96.7 9.3 113 7-125 34-148 (381)
3 2gag_B Heterotetrameric sarcos 99.4 5.4E-12 1.8E-16 93.3 13.1 115 7-128 49-170 (405)
4 2gf3_A MSOX, monomeric sarcosi 99.2 1.6E-10 5.5E-15 84.9 9.9 111 7-125 29-144 (389)
5 2oln_A NIKD protein; flavoprot 99.1 5.3E-10 1.8E-14 82.7 9.1 112 7-125 30-147 (397)
6 1pj5_A N,N-dimethylglycine oxi 99.0 1.4E-09 4.9E-14 87.7 10.2 111 7-125 31-145 (830)
7 2uzz_A N-methyl-L-tryptophan o 99.0 6.9E-09 2.4E-13 75.8 11.0 112 7-128 28-145 (372)
8 1ryi_A Glycine oxidase; flavop 99.0 1.2E-09 4.1E-14 80.1 6.9 113 7-128 43-160 (382)
9 3dme_A Conserved exported prot 98.9 8.3E-09 2.8E-13 74.9 9.7 108 7-125 30-144 (369)
10 3axb_A Putative oxidoreductase 98.9 3.2E-09 1.1E-13 79.8 6.1 107 7-125 50-175 (448)
11 3dje_A Fructosyl amine: oxygen 98.4 1.2E-06 4.1E-11 65.4 7.7 108 7-125 33-154 (438)
12 3pvc_A TRNA 5-methylaminomethy 98.3 4.9E-06 1.7E-10 66.0 9.6 107 7-128 290-408 (689)
13 3ps9_A TRNA 5-methylaminomethy 98.2 5.2E-06 1.8E-10 65.6 9.2 108 7-128 298-413 (676)
14 2rgh_A Alpha-glycerophosphate 98.1 4.7E-05 1.6E-09 59.3 11.7 110 7-124 58-182 (571)
15 3g3e_A D-amino-acid oxidase; F 97.8 4.8E-06 1.6E-10 60.4 1.7 99 7-123 32-135 (351)
16 3c4n_A Uncharacterized protein 97.6 3.3E-05 1.1E-09 57.3 2.6 92 7-125 64-166 (405)
17 2qcu_A Aerobic glycerol-3-phos 97.4 0.00018 6.1E-09 55.0 5.1 106 7-122 29-141 (501)
18 3da1_A Glycerol-3-phosphate de 96.1 0.0079 2.7E-07 46.6 5.3 115 7-123 44-163 (561)
19 1c0p_A D-amino acid oxidase; a 96.0 0.0076 2.6E-07 43.6 4.6 84 7-104 32-125 (363)
20 3ced_A Methionine import ATP-b 31.6 66 0.0023 18.5 3.7 33 66-99 61-95 (98)
21 3dhx_A Methionine import ATP-b 30.4 57 0.0019 19.1 3.3 34 66-100 62-96 (106)
22 2qrr_A Methionine import ATP-b 26.8 73 0.0025 18.3 3.3 33 66-99 64-97 (101)
23 2qsw_A Methionine import ATP-b 26.6 69 0.0024 18.4 3.2 33 66-99 64-97 (100)
24 2e6o_A HMG box-containing prot 22.8 57 0.002 18.2 2.2 36 17-52 1-39 (87)
25 2hiy_A Hypothetical protein; C 22.7 1.6E+02 0.0056 19.1 6.0 43 64-107 41-88 (183)
26 1wjo_A T-plastin; CH domain, a 20.6 1.6E+02 0.0053 18.0 4.5 36 76-112 68-103 (124)
No 1
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.42 E-value=2.3e-12 Score=94.81 Aligned_cols=113 Identities=23% Similarity=0.381 Sum_probs=100.6
Q ss_pred eeeecc-cccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHH
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEK 84 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~ 84 (128)
|.++|. .++.|+|++|+|++++.+..+...+++.++.+.|+++.+.++ . .|+++|.++++ +++..+.+++
T Consensus 31 V~lle~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~--~~~~~g~l~~~~~~~~~~~~~~ 102 (382)
T 1y56_B 31 VTVIEKRFIGSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKYSEEYG------F--SFKQTGYLFLLYDDEEVKTFKR 102 (382)
T ss_dssp EEEECSSSTTCSHHHHCCCCCCCCCSSHHHHHHHHHHHHHHHHHHHHHT------C--CEECCCEEEEECSHHHHHHHHH
T ss_pred EEEEeCCCCCCCccccccCeeeecCCChHHHHHHHHHHHHHHHHHHHhC------C--CeeccceEEEEeCHHHHHHHHH
Confidence 667774 689999999999999999988889999999999999998877 4 78999999999 8888888888
Q ss_pred HHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
..+.+++.|++.++++++++.+++|.+..+.+.+++|.|.+ ||
T Consensus 103 ~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~-~~ 145 (382)
T 1y56_B 103 NIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASWNPTD-GK 145 (382)
T ss_dssp HHHHHHHTTCCCEEECHHHHHHSSTTCCCTTCCEEEEETTC-CE
T ss_pred HHHHHHhcCCCcEEeCHHHHHHhCCCCCcccceEEEEcCCC-ee
Confidence 88889999999999999999999998876678889998876 53
No 2
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=99.42 E-value=8.3e-13 Score=96.75 Aligned_cols=113 Identities=17% Similarity=0.105 Sum_probs=96.4
Q ss_pred eeeecc--cccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEeChhhHHHHHH
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEK 84 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a~~~~~~~l~~ 84 (128)
|+|+|. .+|.|+|++|+|+++..+..+.+.+++.++.++|+++.+.+. ....|+++|.+.++..++.+.+++
T Consensus 34 V~vlE~~~~~g~~as~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~ 107 (381)
T 3nyc_A 34 VVVLEREAQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPPAGFC------EHPLLSPRPEMVVDFSDDPEELRR 107 (381)
T ss_dssp EEEECSSSSTTSSGGGSCCCEECSSSSCHHHHHHHHHHHHHHHSCCTTSC------SSCSEEECCEEEECSSCCHHHHHH
T ss_pred EEEEECCCCccccccccccceeecccCCHHHHHHHHHHHHHHHHhhhhhC------CcccccccceEEEechHHHHHHHH
Confidence 667775 479999999999999999998899999999999999876654 333589999999993345678888
Q ss_pred HHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
..+.++..|++.++++++++.+++|.++.+.+.+++|.|++
T Consensus 108 ~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~~~~~ 148 (381)
T 3nyc_A 108 QYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYDPTG 148 (381)
T ss_dssp HHHHHHHHCTTCEEECHHHHHHHSTTBCGGGCCCEEEETTC
T ss_pred HHHHHHHcCCCcEEeCHHHHHHhCCCcccccceEEEEcCCC
Confidence 88888999999999999999999999986557889999875
No 3
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=99.41 E-value=5.4e-12 Score=93.29 Aligned_cols=115 Identities=18% Similarity=0.170 Sum_probs=101.9
Q ss_pred eeeec-ccccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEK 84 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~~ 84 (128)
|.|+| ..++.|+|++|+|+++..+..+...++...+.+.|+++.+.++ .++.|+++|.+.++ +++..+.+.+
T Consensus 49 V~vlE~~~~~~gas~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~ 122 (405)
T 2gag_B 49 VAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWEQLPEDLE------YDFLFSQRGVLNLAHTLGDVRESVR 122 (405)
T ss_dssp EEEECSSSTTCSGGGTSCCCBCCCCSSHHHHHHHHHHHHHHHHHHHHTT------CCCCCBCCCEEEEECSHHHHHHHHH
T ss_pred EEEEeCCCCCCCcccccCceeeecCCCHHHHHHHHHHHHHHHHHHHHhC------CCcCEecccEEEEEcCHHHHHHHHH
Confidence 56677 4689999999999999999888889999999999999998887 78889999999999 8888888888
Q ss_pred HHHHHHHcCCCcceeCHhhHHHhCCCCCc-----CCceeEEecCCCCCC
Q psy10290 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNT-----DDIALACLGLEKEGW 128 (128)
Q Consensus 85 ~~~~~~~~G~~~e~l~~~~~~~~~P~l~~-----~~~~ga~~~p~d~g~ 128 (128)
..+.++..|++.++++++++.+++|.+.. ..+.+++|.|.+ ||
T Consensus 123 ~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 170 (405)
T 2gag_B 123 RVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRA-GI 170 (405)
T ss_dssp HHHHHHTBTCCCEEECHHHHHHHCTTSCCSTTSSSCCCEEEEETTC-BB
T ss_pred HHHHHHhcCCCceEeCHHHHHhhCCCCcccccccccceeEEEeCCC-cc
Confidence 88889999999999999999999998875 467889998875 54
No 4
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=99.18 E-value=1.6e-10 Score=84.93 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=93.1
Q ss_pred eeeecc-cccc--cccccccchhhhhcCc-HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLVS-LYAR--ASTTLSVGGLRQQFSL-RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~~-~~~~--gaS~~~~g~~~~~~~~-~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|+|+|. ..+. |+|+.++|+++..+.. +.+.++..++.++|+++.+..+ .+ .++++|.+.++ ++ +.+.
T Consensus 29 V~vie~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~------~~-~~~~~g~~~~~~~~-~~~~ 100 (389)
T 2gf3_A 29 TLLVDAFDPPHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYELEKETH------HK-IFTKTGVLVFGPKG-ESAF 100 (389)
T ss_dssp EEEECSSCSSCSSSSSCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHHHHCS------SC-CEECCCEEEEEETT-CCHH
T ss_pred EEEEeCCCCCCCCCCCCCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHhC------Cc-ceeecceEEEcCCC-chHH
Confidence 667775 5677 9999999999987765 4688999999999999998876 55 58999999999 64 4456
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
+++..+.++..|++.++++++++.+++|.++.+...+++|.|.+
T Consensus 101 ~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 144 (389)
T 2gf3_A 101 VAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIFEPNS 144 (389)
T ss_dssp HHHHHHHHHHTTCCCEEEETHHHHHHSTTCCCCTTEEEEEETTC
T ss_pred HHHHHHHHHHcCCCcEEcCHHHHHHhCCCcccCCCceEEEeCCC
Confidence 67777788889999999999999999999886678889998875
No 5
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=99.08 E-value=5.3e-10 Score=82.67 Aligned_cols=112 Identities=12% Similarity=0.188 Sum_probs=91.3
Q ss_pred eeeecc-cccc--cccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chh--hHH
Q psy10290 7 LASLVS-LYAR--ASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD--GAA 80 (128)
Q Consensus 7 ~~~~~~-~~~~--gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~--~~~ 80 (128)
|+|+|. ..+. |+|+.++++++..+..+.+.++..++++.|+++.+..+ .++ ++++|.+.++ ++. ..+
T Consensus 30 V~vlE~~~~~~~~gas~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~-~~~~g~l~~~~~~~~~~~~ 102 (397)
T 2oln_A 30 VLVLERHTFFNENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRALESRCE------RRL-IHEIGSLWFGDTDVVTNEG 102 (397)
T ss_dssp EEEEESSCTTCSSSSCCSSEEEECSCCSSHHHHHHHHHHHHHHHHHHHHHT------CCC-EECCCEEEEECSSCCBTTB
T ss_pred EEEEeCCCCCCCCCCCCCcCeEEEeccCcchhhhHHHHHHHHHHHHHHHhC------ccH-HHHCCcEEEcCCCccchhH
Confidence 667774 5666 89999999998888888889999999999999988776 554 8899999999 543 223
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
.+++..+.+++.|++.++++++++.+++|.+..+...+++|.|.+
T Consensus 103 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 147 (397)
T 2oln_A 103 QISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQPDG 147 (397)
T ss_dssp CHHHHHHHHHHTTCCCEEEEHHHHHHHHCCCSCCTTCEEEEETTC
T ss_pred HHHHHHHHHHHcCCCceecCHHHHHhhCcCccCCCceeEEEcCCC
Confidence 455666777889999999999999999998876667889998875
No 6
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=99.03 E-value=1.4e-09 Score=87.74 Aligned_cols=111 Identities=18% Similarity=0.183 Sum_probs=93.8
Q ss_pred eeeecc-cc--cccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHH
Q psy10290 7 LASLVS-LY--ARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 82 (128)
Q Consensus 7 ~~~~~~-~~--~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l 82 (128)
|+|+|. .. ..|+|++++|++........+.+++..+.++|+++.+. + . ..|+++|.+.++ +++..+.+
T Consensus 31 V~vlE~~~~~~~~gss~~~~G~~~~~~~~~~~~~l~~~s~~~~~~l~~~-~------~-~~~~~~G~l~~~~~~~~~~~l 102 (830)
T 1pj5_A 31 ITVLDQGPLNMPGGSTSHAPGLVFQTNPSKTMASFAKYTVEKLLSLTED-G------V-SCFNQVGGLEVATTETRLADL 102 (830)
T ss_dssp EEEECSSCTTCCCSGGGTCCCEECCCCSCHHHHHHHHHHHHHHHHCEET-T------E-ESEECCCEEEEESSHHHHHHH
T ss_pred EEEEeCCCCCCCcccceeCCceeecCCCCHHHHHHHHHHHHHHHHHHhh-C------C-CCeeecCcEEEEeCHHHHHHH
Confidence 667775 44 36888999999987777778899999999999998532 3 2 468999999999 88888888
Q ss_pred HHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 83 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 83 ~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
++..+.++.+|++.++++++++.+++|.++.+.+.+++|.|.+
T Consensus 103 ~~~~~~~~~~G~~~~~l~~~e~~~~~p~l~~~~~~gg~~~~~~ 145 (830)
T 1pj5_A 103 KRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGGLHVPSD 145 (830)
T ss_dssp HHHHHHHHHHTCCCEEECHHHHHHHCTTSCGGGCCEEEEETTC
T ss_pred HHHHHHHHHcCCCeEEECHHHHHHhCccCCccceEEEEEECCC
Confidence 8888888999999999999999999999886678899999876
No 7
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.97 E-value=6.9e-09 Score=75.81 Aligned_cols=112 Identities=11% Similarity=0.157 Sum_probs=87.6
Q ss_pred eeeecc-ccc--ccccccccchhhhhcCc-HHHHHHHHHHHHHHHHHHHhhcccCCCCC-CcceeecceEEEe-ChhhHH
Q psy10290 7 LASLVS-LYA--RASTTLSVGGLRQQFSL-RENIEMSLFGAEFLRNIKHHCHVIGEDEP-DVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~~-~~~--~gaS~~~~g~~~~~~~~-~~~~~la~~s~~~~~~~~~~~~~~~~~~~-~~~~~~~G~L~~a-~~~~~~ 80 (128)
|.|+|. ..+ .++|..++++++..+.. +.+.+++.++.++|+++. +.+ + +..++++|.+.++ ++. +
T Consensus 28 V~vle~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~------~~~~~~~~~g~l~~~~~~~--~ 98 (372)
T 2uzz_A 28 VLMTDAHMPPHQHGSHHGDTRLIRHAYGEGEKYVPLVLRAQMLWDELS-RHN------EDDPIFVRSGVINLGPADS--T 98 (372)
T ss_dssp EEEECSSCSSSSSSSCCSSEEEECSSCTTCGGGHHHHHHHHHHHHHHH-TTC------SSSCSEECCCEEEEEETTC--H
T ss_pred EEEEecCCCCCCCCCCCCccceeeeccCCCchHHHHHHHHHHHHHHHH-HhC------CCccceeeeceEEEeCCCc--H
Confidence 667774 444 35666777788865654 568899999999999998 665 4 3468999999999 654 3
Q ss_pred HHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
.+++..+.++..|++.++++++++.+++|.++.+...+++|.|.+ ||
T Consensus 99 ~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~~~-g~ 145 (372)
T 2uzz_A 99 FLANVAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDS-GF 145 (372)
T ss_dssp HHHHHHHHHHHTTCCEEEEEHHHHHHHCTTCCCCTTEEEEEESSC-EE
T ss_pred HHHHHHHHHHHcCCCcEecCHHHHHhhCCCccCCCCceEEEeCCC-cE
Confidence 566677778889999999999999999998876677789999876 54
No 8
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.96 E-value=1.2e-09 Score=80.13 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=87.6
Q ss_pred eeeecc-cccccccccccchhhhhcC---cHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQQFS---LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~~~~---~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|.++|. .++.|+|++|+|++.+.+. ...+.+|+.++.+.|+++.+.+. +.+++++.|+++|.+.++ ++++.+.
T Consensus 43 V~llE~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~l~~~~~~~~~~~ 120 (382)
T 1ryi_A 43 TALFESGTMGGRTTSAAAGMLGAHAECEERDAFFDFAMHSQRLYKGLGEELY--ALSGVDIRQHNGGMFKLAFSEEDVLQ 120 (382)
T ss_dssp EEEECSSSTTTTHHHHCCCBCCGGGSCSSCSHHHHHHHHHHHHTTTHHHHHH--HHHCCCCCCBCCCEEEEESSHHHHHH
T ss_pred EEEEeCCCCCcccchhcCceeccCccCCCCcHHHHHHHHHHHHHHHHHHHHH--HhhCCCcCeeecceEEEEeCHHHHHH
Confidence 667774 6889999999999988765 34678999999999988876651 112277889999999999 7776655
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
+.+..+. ...++++++++.+++|.+. +.+.++++.|.+ |+
T Consensus 121 ~~~~~~~-----~~~~~l~~~~~~~~~p~~~-~~~~~~~~~~~~-~~ 160 (382)
T 1ryi_A 121 LRQMDDL-----DSVSWYSKEEVLEKEPYAS-GDIFGASFIQDD-VH 160 (382)
T ss_dssp HHTTTTS-----TTEEEEEHHHHHHHCTTSC-TTCCEEEEETTC-CB
T ss_pred HHHHhhc-----CCeEEECHHHHHHhCCCCC-cccceEEEeCCC-eE
Confidence 5443332 6789999999999999887 578889998775 53
No 9
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.91 E-value=8.3e-09 Score=74.89 Aligned_cols=108 Identities=11% Similarity=0.030 Sum_probs=89.9
Q ss_pred eeeecc--cccccccccccchhhhhcCc---HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHH
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSL---RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAA 80 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~---~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~ 80 (128)
|.|+|. .++.|+|++|+|++...+.. +...+++..+.+.|.++.+.++ + .++++|.+.++ ++++.+
T Consensus 30 V~vlE~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~g~~~~~~~~~~~~ 101 (369)
T 3dme_A 30 VLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARG------V--PHQRLGKLIVATSDAEAS 101 (369)
T ss_dssp EEEECSSSSSSCSTTSSSCCEECCCCSSCTTCHHHHHHHHHHHHHHHHHHHHT------C--CEECCCEEEEECSHHHHT
T ss_pred EEEEeCCCCCCCccCcCCccccccCccCCCCCHhHHHHHHHHHHHHHHHHHcC------C--CcccCCEEEEecCHHHHH
Confidence 667774 47999999999999765432 3467899999999999998877 4 58999999999 888888
Q ss_pred HHHHHHHHHHHcCCC-cceeCHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 81 TLEKNHQLQKELGAK-NVLLGPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 81 ~l~~~~~~~~~~G~~-~e~l~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
.+....+.....|++ .++++++++.+++|.+. +.+++|.|.+
T Consensus 102 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~---~~~~~~~~~~ 144 (369)
T 3dme_A 102 QLDSIARRAGANGVDDLQHIDGAAARRLEPALH---CTAALVSPST 144 (369)
T ss_dssp THHHHHHHHHHTTCCCCEEEEHHHHHHHCTTCC---CSEEEEETTC
T ss_pred HHHHHHHHHHHcCCCceeecCHHHHHHhCCCce---eeeeeECCCC
Confidence 888888888999998 99999999999999764 5678888765
No 10
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=98.86 E-value=3.2e-09 Score=79.78 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=87.6
Q ss_pred eeeec--ccccccccccccchhhhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHHHH
Q psy10290 7 LASLV--SLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLE 83 (128)
Q Consensus 7 ~~~~~--~~~~~gaS~~~~g~~~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~l~ 83 (128)
|+|+| ..++.|+|++|+|++++.+..+...+++..+.+.|+++.+. + .++.++++|.++ + ++++.+.++
T Consensus 50 V~vlE~~~~~~~g~S~~~~g~i~~~~~~~~~~~l~~~~~~~~~~l~~~-g------~~~~~~~~g~l~-~~~~~~~~~~~ 121 (448)
T 3axb_A 50 VLVVDAGHAPGSGDSGRSMAAFRTFFSSTMNRLVAGSTVRLFEDAQRG-G------EDLGLVKSGYLF-VYDRERWREVE 121 (448)
T ss_dssp EEEEESSSSTTCSGGGSSCCEEECCCSSHHHHHHHHHHHHHHHHHHHT-T------CCCCCBCCCEEE-EECHHHHHHHH
T ss_pred EEEEccCCCCCCCcccCCCcEecccCCCHHHHHHHHHHHHHHHHHHhc-C------cccccccCCEEE-EcCHHHHHHHH
Confidence 55565 45799999999999999888888999999999999999877 6 778899999999 7 877777777
Q ss_pred HHHHHHHHcCCCc-----cee-----------CHhhHHHhCCCCCcCCceeEEecCCC
Q psy10290 84 KNHQLQKELGAKN-----VLL-----------GPEQLKAKFPWLNTDDIALACLGLEK 125 (128)
Q Consensus 84 ~~~~~~~~~G~~~-----e~l-----------~~~~~~~~~P~l~~~~~~ga~~~p~d 125 (128)
+..+.+++.|++. +++ +++++.+ +..+.+.++++.|.+
T Consensus 122 ~~~~~~~~~g~~~~p~~~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 175 (448)
T 3axb_A 122 EPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEV----LGVGDVEGAVLIRSA 175 (448)
T ss_dssp HHHTTSCCBTTTEEEECHHHHHHHHCCCCCCTTSSHHHH----HTCCCCCEEEEESSE
T ss_pred HHHHHHHhhCCCccccchhhhhhcccccccCCCHHHHHh----ccCCCceEEEEeCCC
Confidence 7777667788887 888 9999887 233567788888764
No 11
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.36 E-value=1.2e-06 Score=65.43 Aligned_cols=108 Identities=15% Similarity=0.026 Sum_probs=79.1
Q ss_pred eeeecc-cccccccc--cccchhhhhcCcHHHH------HHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Ch
Q psy10290 7 LASLVS-LYARASTT--LSVGGLRQQFSLRENI------EMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQ 76 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~--~~~g~~~~~~~~~~~~------~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~ 76 (128)
|+|+|. ..+.|.|+ ..+.+++..+..+.+. +++.++.+.|+++. . .++.|+++|.+.++ ++
T Consensus 33 V~vlE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~--------~~~~~~~~g~l~~~~~~ 103 (438)
T 3dje_A 33 VTVLDPYPVPSAISAGNDVNKVISSGQYSNNKDEIEVNEILAEEAFNGWKNDP-L--------FKPYYHDTGLLMSACSQ 103 (438)
T ss_dssp EEEEESSCSSCTTCTTCSSCEEECCCCSCCCHHHHHHHHHHHHHHHHHHHHCT-T--------TGGGEECCCEEEEECSH
T ss_pred EEEEeCCCCCCCCccCCCCccEEEeccCCchhhhcchhHHHHHHHHHHHhhCc-c--------ccCcEeccceEEEecCc
Confidence 566664 44444332 3445666666666677 99999999998763 2 34689999999999 88
Q ss_pred hhHHHHHHHHHHHHHcCCCc-ceeCHhhHHHhCCC-CCcCCcee--EEecCCC
Q psy10290 77 DGAATLEKNHQLQKELGAKN-VLLGPEQLKAKFPW-LNTDDIAL--ACLGLEK 125 (128)
Q Consensus 77 ~~~~~l~~~~~~~~~~G~~~-e~l~~~~~~~~~P~-l~~~~~~g--a~~~p~d 125 (128)
...+.+++..+. ..|.+. ++++++++++++|. +..+.+.+ ++|.|.+
T Consensus 104 ~~~~~~~~~~~~--~~g~~~~~~l~~~~~~~~~p~~l~~~~~~g~~g~~~~~~ 154 (438)
T 3dje_A 104 EGLDRLGVRVRP--GEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSG 154 (438)
T ss_dssp HHHHHHHHHHCG--GGCTTCEEECSHHHHHTTSCTTTSCSCCTTCEEEEESSS
T ss_pred chHHHHHHHHhh--cccCCceecCCHHHHHHhCCcccccCCCCCceEEEeCCC
Confidence 777777666654 678877 78899999999997 74456777 8888764
No 12
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.27 E-value=4.9e-06 Score=65.97 Aligned_cols=107 Identities=13% Similarity=0.027 Sum_probs=78.7
Q ss_pred eeeecc--cccccccccccchhhhhcCc--HHHHHH----HHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chh
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSL--RENIEM----SLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD 77 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~--~~~~~l----a~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~ 77 (128)
|+|+|. .+|.|+|++++|++.+.+.. ....++ ...+.++|+++.+. + +++.+..+|.+.++ +++
T Consensus 290 V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~-~------~~~~~~~~g~l~~~~~~~ 362 (689)
T 3pvc_A 290 VTLYCADAQPAQGASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQ-G------IAFDHQWCGVSQLAFDDK 362 (689)
T ss_dssp EEEEESSSSTTCSGGGCSCEEECCCCCSSCSHHHHHHHHHHHHHHHHHHHHHHT-T------CCCCEECCCEEEECCSHH
T ss_pred EEEEeCCCccccccccccCCEEecCCCCCChHHHHHHHHHHHHHHHHHHHhhhh-c------cccccccCceEEeccCHH
Confidence 677775 48999999999999876543 223333 45688888887432 4 67789999999999 877
Q ss_pred hHHHHHHHHHHHHHcCCCcc---eeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 78 GAATLEKNHQLQKELGAKNV---LLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 78 ~~~~l~~~~~~~~~~G~~~e---~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
..+.++. +.+.|++.+ +++++++.+++| +. ...+++|.|.+ ||
T Consensus 363 ~~~~~~~----~~~~g~~~~~~~~l~~~~~~~~~~-l~--~~~gg~~~p~~-g~ 408 (689)
T 3pvc_A 363 SRGKIEK----MLHTQWPVEFAEAMSREQLSELAG-LD--CAHDGIHYPAG-GW 408 (689)
T ss_dssp HHHHHHH----HTTSCCCTTTCEEECHHHHHHHHS-SC--CSSCEEEETTC-EE
T ss_pred HHHHHHH----HHhcCCChHHhhccCHHHHHHhcC-CC--cccceEEecCC-eE
Confidence 6655543 345688777 999999999999 53 57788998875 54
No 13
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.25 E-value=5.2e-06 Score=65.64 Aligned_cols=108 Identities=8% Similarity=0.017 Sum_probs=78.7
Q ss_pred eeeecc--cccccccccccchhhhhcCc--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLVS--LYARASTTLSVGGLRQQFSL--RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~~--~~~~gaS~~~~g~~~~~~~~--~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|+|+|. .+|.|+|++++|++.+.... ....++...+.....++.+.++ .++.+..+|.+.++ ++++.+.
T Consensus 298 V~vlEk~~~~g~gaS~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~~~~~~~~g~l~~~~~~~~~~~ 371 (676)
T 3ps9_A 298 VTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLP------VKFDHDWCGVTQLGWDEKSQHK 371 (676)
T ss_dssp EEEEESSSSSSCSTTCCSCEEECCCCCSSCHHHHHHHHHHHHHHHHHHHHCC------SCCCEECCCEEEECCSHHHHHH
T ss_pred EEEEeCCCcccccCccCCCceecCcCCCCccHHHHHHHHHHHHHHHHHHHCC------CCcCcCcCCeeeecCCHHHHHH
Confidence 667775 48999999999999876543 3456665555555555555555 67788999999999 8777665
Q ss_pred HHHHHHHHHHcCCCcc---eeCHhhHHHhCCCCCcCCceeEEecCCCCCC
Q psy10290 82 LEKNHQLQKELGAKNV---LLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e---~l~~~~~~~~~P~l~~~~~~ga~~~p~d~g~ 128 (128)
++. +...|++.+ +++++++.++.| + +...++++.|.+ ||
T Consensus 372 ~~~----~~~~g~~~~~~~~l~~~~~~~~~~-l--~~~~gg~~~p~~-g~ 413 (676)
T 3ps9_A 372 IAQ----MLSMDLPAELAVAVEANAVEQITG-V--ATNCSGITYPQG-GW 413 (676)
T ss_dssp HHH----HHTSCCCTTTCEEECHHHHHHHHS-S--CCSSCEEEETTC-EE
T ss_pred HHH----HHhcCCcHHHhhhCCHHHHHHhhC-C--CccCCcEEecCC-ee
Confidence 544 346788776 999999999998 4 356788888875 54
No 14
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=98.10 E-value=4.7e-05 Score=59.28 Aligned_cols=110 Identities=14% Similarity=0.099 Sum_probs=70.2
Q ss_pred eeeec-ccccccccccccchhhhhc--CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Chhh----
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQF--SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDG---- 78 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~--~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~~~---- 78 (128)
|+|+| .+++.|+|++|+|++.... ......++..++...+..+... . .. ..++.|.+... .+..
T Consensus 58 V~LlE~~~~~~GtS~~s~gli~~g~ryl~~~~~~l~~~~~~e~~~l~~~-~------~~-~~~~~~~l~~~~~~~g~~~~ 129 (571)
T 2rgh_A 58 TGLIEMQDFAEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGI-A------PH-IPKPDPMLLPIYEDEGATTF 129 (571)
T ss_dssp EEEECSSSTTCSGGGSSCSEECCCGGGGGGTCHHHHHHHHHHHHHHHHH-C------TT-SSEECCEEEEEESSSSSCSC
T ss_pred EEEEeCCCCCCCcccccccccccccchhhccChHHHHHHHHHHHHHHHh-C------cc-cccccCceEEeecccccccc
Confidence 66777 4789999999999986532 2223456666666665544432 2 12 24567776654 3211
Q ss_pred ----HHHHHHHHHHHH---HcCCCcceeCHhhHHHhCCCCCcCCceeEEecCC
Q psy10290 79 ----AATLEKNHQLQK---ELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE 124 (128)
Q Consensus 79 ----~~~l~~~~~~~~---~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p~ 124 (128)
.......++.+. ..+.+.++++++++.+++|.++.+.+.+++++++
T Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~e~~~~~P~l~~~~~~gg~~~~d 182 (571)
T 2rgh_A 130 NMFSVKVAMDLYDKLANVTGTKYENYTLTPEEVLEREPFLKKEGLKGAGVYLD 182 (571)
T ss_dssp CHHHHHHHHHHHHHHHTCSSSTTCCEEECHHHHHHHCTTSCCTTEEEEEEECC
T ss_pred cHHHHHHHHHHHHHHhhhhccCCCcEEECHHHHHHhCcCCchhhceEEEEecC
Confidence 111223333333 3577899999999999999998767888888864
No 15
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=97.83 E-value=4.8e-06 Score=60.44 Aligned_cols=99 Identities=14% Similarity=0.125 Sum_probs=65.7
Q ss_pred eeeecc-cccccccccccchhhhhcC---cHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcce-eecceEEEeChhhHHH
Q psy10290 7 LASLVS-LYARASTTLSVGGLRQQFS---LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNF-TPNGYLFCASQDGAAT 81 (128)
Q Consensus 7 ~~~~~~-~~~~gaS~~~~g~~~~~~~---~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~-~~~G~L~~a~~~~~~~ 81 (128)
|+|+|. .++.|+|++|+|++++.+. .....+++..+.+.|.++..+.. ++++.+ ..+|.+++.++++.
T Consensus 32 V~vlE~~~~~~~aS~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~~~-- 104 (351)
T 3g3e_A 32 IKVYADRFTPLTTTDVAAGLWQPYLSDPNNPQEADWSQQTFDYLLSHVHSPN-----AENLGLFLISGYNLFHEAIPD-- 104 (351)
T ss_dssp EEEEESSCGGGSGGGTCCCBCCCCSSCCSCTHHHHHHHHHHHHHHTTTTSTT-----HHHHTEEEEEEEEEESSCCCC--
T ss_pred EEEEECCCCCCCccccCcceeecccCCCchHHHHHHHHHHHHHHHHHhhccC-----CCCccEEEEEEEEEecCCccc--
Confidence 566674 6799999999999987543 23466777777777777665431 023444 67777776643331
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 123 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p 123 (128)
+.+.+.+.+.++++++++ +++|. +.++++.|
T Consensus 105 -----~~~~~~~~~~~~l~~~e~-~~~p~-----~~~~~~~~ 135 (351)
T 3g3e_A 105 -----PSWKDTVLGFRKLTPREL-DMFPD-----YGYGWFHT 135 (351)
T ss_dssp -----CGGGGTSEEEEECCHHHH-TTCTT-----CCEEEEEE
T ss_pred -----cCHHHhCCCceECCHHHh-ccCCC-----CceEEEec
Confidence 233457888999999999 56663 44566654
No 16
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=97.56 E-value=3.3e-05 Score=57.32 Aligned_cols=92 Identities=13% Similarity=0.082 Sum_probs=67.5
Q ss_pred eeeec-ccccccccccccc-hh--hhhcCcHHHHHHHHHHHHHHHHHHHhhcccCCCCC--CcceeecceEEEe-ChhhH
Q psy10290 7 LASLV-SLYARASTTLSVG-GL--RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEP--DVNFTPNGYLFCA-SQDGA 79 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g-~~--~~~~~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~--~~~~~~~G~L~~a-~~~~~ 79 (128)
|+|+| ..++.|+|++++| .+ +..+..+ +.++..+++++|++ ..+ . ++.|+++|.+.+. ...
T Consensus 64 V~vlE~~~~~~~~s~~~~g~~i~~~~~~~~~-~~~l~~~~~~~~~~---~~~------~~~~~~~~~~g~l~~~~~~~-- 131 (405)
T 3c4n_A 64 LLLVEEGGLPNEEGATILAPGVWTAQDIPAG-QEAQAEWTREQLLG---ALG------SGKTLEVEDRPLLHLLPAGE-- 131 (405)
T ss_dssp EEEECSSCSSCTTSHHHHCCCEECGGGCCTT-CHHHHHHHHHHHHT---GGG------SSCCCCEEECCEEEEESSCC--
T ss_pred EEEEeCCCCCCcchhccCCcceeecccCCch-HHHHHHHHHHHHHH---HhC------CCCCCcEEeeCeEEehhhHh--
Confidence 66677 4689999999998 45 5555544 78899999999987 344 5 5789999999876 322
Q ss_pred HHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCCc----CCceeEEecCCC
Q psy10290 80 ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT----DDIALACLGLEK 125 (128)
Q Consensus 80 ~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~----~~~~ga~~~p~d 125 (128)
..| +++++++.+++|.+.. +...+++|.|.+
T Consensus 132 -----------~~g----~l~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 166 (405)
T 3c4n_A 132 -----------GSG----LTPTLDALADFPEALALLDPARLPVARVDPRA 166 (405)
T ss_dssp -----------SSS----CEEHHHHTTTCHHHHTTSCTTTSCEEEEETTC
T ss_pred -----------HCC----CCCHHHHHHhCCCccccccCCcceEEEEcCCC
Confidence 233 7888898888886653 467788888765
No 17
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=97.41 E-value=0.00018 Score=54.96 Aligned_cols=106 Identities=11% Similarity=-0.082 Sum_probs=69.1
Q ss_pred eeeec-ccccccccccccchhhhhc--CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEeChh--hHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQF--SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD--GAAT 81 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~--~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a~~~--~~~~ 81 (128)
|+++| .++++|+|++|+|+++... ......+|+.++.+.|..+.+... -..++.|.+...+.. +...
T Consensus 29 V~llE~~~~~~gtS~~s~gli~~g~~~~~~~~~~l~~~~~~~~~~l~~~~~--------~l~~~~~~~~~~~~~~~~~~~ 100 (501)
T 2qcu_A 29 VLMLEAQDLACATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAP--------HIAFPMRFRLPHRPHLRPAWM 100 (501)
T ss_dssp EEEECSSSTTCSGGGSSCCEECCCGGGGGGTCHHHHHHHHHHHHHHHHHCT--------TTEEEEEEEEECCTTTSCHHH
T ss_pred EEEEECCCCCCCccccccccccccchhhhhchHHHHHHHHHHHHHHHHhCC--------ccccccCeEeccCcccchHHH
Confidence 66777 4789999999999997532 223457888899988888765432 234566665444322 1112
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhC--CCCCcCCceeEEec
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKF--PWLNTDDIALACLG 122 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~--P~l~~~~~~ga~~~ 122 (128)
.+.........+ ..++++++++.+++ |.++. .+.++++.
T Consensus 101 ~~~~~~~~~~~~-~~~~l~~~~~~~~~~~P~l~~-~~~~~~~~ 141 (501)
T 2qcu_A 101 IRIGLFMYDHLG-KRTSLPGSTGLRFGANSVLKP-EIKRGFEY 141 (501)
T ss_dssp HHHHHHHHHSSS-CCSSSCCCEEEECCTTSSBCT-TCCEEEEE
T ss_pred HHHHHHHHHhcC-CcEEECHHHHHHhhcCCCcch-hceEEEEe
Confidence 223333334444 78899999999999 98884 57777765
No 18
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=96.11 E-value=0.0079 Score=46.64 Aligned_cols=115 Identities=10% Similarity=0.013 Sum_probs=46.9
Q ss_pred eeeec-ccccccccccccchhhhhcC--cHHHHHHHHHHHHHHHHHHHhhc-ccCCCCCCcceeecceEEEe-ChhhHHH
Q psy10290 7 LASLV-SLYARASTTLSVGGLRQQFS--LRENIEMSLFGAEFLRNIKHHCH-VIGEDEPDVNFTPNGYLFCA-SQDGAAT 81 (128)
Q Consensus 7 ~~~~~-~~~~~gaS~~~~g~~~~~~~--~~~~~~la~~s~~~~~~~~~~~~-~~~~~~~~~~~~~~G~L~~a-~~~~~~~ 81 (128)
|+++| .+++.|+|++|++++..... .....++..++......+.+... +.......+.+.+.|.+... .......
T Consensus 44 V~LlEk~d~~~GtS~~ss~lihgG~ryl~~~~~~l~~e~~~e~~~l~~~ap~l~~~~~~~~p~~~~~~~~~~~~~~g~~~ 123 (561)
T 3da1_A 44 TGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAPHVTTPEWMLLPIFKDGTFGKFSTSLGLKV 123 (561)
T ss_dssp EEEEESSSTTCSGGGSSCCEECC---------------CHHHHHHHHHHCTTTCEEEEEEEEECC---------------
T ss_pred EEEEECCCCCCCcccCCcCccccchHHHHhcCHHHHHHHHHHHHHHHHhCchhccccceeEeecCCccHHHHHHHhHHHH
Confidence 56666 47899999999998854322 22223344333333332222111 00000000111222222221 1111111
Q ss_pred HHHHHHHHHHcCCCcceeCHhhHHHhCCCCCcCCceeEEecC
Q psy10290 82 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 123 (128)
Q Consensus 82 l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~~~~~~ga~~~p 123 (128)
+.. .. ....+.+.++++++++.+++|.++.+.+.++++++
T Consensus 124 ~d~-l~-~~~~~~~~~~l~~~~~~~~~P~l~~~~~~gg~~~~ 163 (561)
T 3da1_A 124 YDY-LA-DVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYV 163 (561)
T ss_dssp --------------CEEECHHHHHHHCTTSCCTTCCEEEEEE
T ss_pred HHH-hh-cccCCCCcEEECHHHHHHhCccCChhhceeEEEec
Confidence 111 11 11224568899999999999999866688887765
No 19
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=96.03 E-value=0.0076 Score=43.59 Aligned_cols=84 Identities=10% Similarity=-0.032 Sum_probs=53.9
Q ss_pred eeeecc-ccccc-----ccccccchhhhhc---CcHHHHHHHHHHHHHHHHHHHhhcccCCCCCCcceeecceEEEe-Ch
Q psy10290 7 LASLVS-LYARA-----STTLSVGGLRQQF---SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQ 76 (128)
Q Consensus 7 ~~~~~~-~~~~g-----aS~~~~g~~~~~~---~~~~~~~la~~s~~~~~~~~~~~~~~~~~~~~~~~~~~G~L~~a-~~ 76 (128)
|+|+|. .++.| +|++++|.+.+.. ..+...+++..+.+.|+++.+. + ..+...+.+.+. ++
T Consensus 32 V~vle~~~~~~g~s~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~g~~~~~~~~~~~~~ 102 (363)
T 1c0p_A 32 VHILARDLPEDVSSQTFASPWAGANWTPFMTLTDGPRQAKWEESTFKKWVELVPT-G--------HAMWLKGTRRFAQNE 102 (363)
T ss_dssp EEEEESSCTTCTTCTTSSGGGCCCBCCCCSCTTTCHHHHHHHHHHHHHHHHHTTT-T--------SSEEEEEEEEEESSG
T ss_pred EEEEeccCCCCcCCcCcccCcccccccCcccCCCchHHHHHHHHHHHHHHHhCcc-c--------CCeEEECCEEEEecC
Confidence 566674 57776 5566677766543 3566788999999999888533 0 223455667666 44
Q ss_pred hhHHHHHHHHHHHHHcCCCcceeCHhhH
Q psy10290 77 DGAATLEKNHQLQKELGAKNVLLGPEQL 104 (128)
Q Consensus 77 ~~~~~l~~~~~~~~~~G~~~e~l~~~~~ 104 (128)
.. ...+.+++.|.+.++++++++
T Consensus 103 ~~-----~~~~~~~~~g~~~~~l~~~~~ 125 (363)
T 1c0p_A 103 DG-----LLGHWYKDITPNYRPLPSSEC 125 (363)
T ss_dssp GG-----GGGGTTTTTSTTCEECCGGGS
T ss_pred cc-----chhHHHHHhCCCcEECCHHHC
Confidence 32 122334567888999999875
No 20
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=31.55 E-value=66 Score=18.53 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=25.4
Q ss_pred eecceEEEe-Ch-hhHHHHHHHHHHHHHcCCCccee
Q psy10290 66 TPNGYLFCA-SQ-DGAATLEKNHQLQKELGAKNVLL 99 (128)
Q Consensus 66 ~~~G~L~~a-~~-~~~~~l~~~~~~~~~~G~~~e~l 99 (128)
++.|.|.+. .- ++ +.+++..+.+++.|+.+|.+
T Consensus 61 ~~~G~L~v~l~G~~~-~~~~~ai~~L~~~~v~vEvl 95 (98)
T 3ced_A 61 GTVGFLVLHIPYISS-VDFGKFEKELIERQVKMEVL 95 (98)
T ss_dssp EEEEEEEEEESCCCH-HHHHHHHHHHHHTTCEEEEE
T ss_pred EeEEEEEEEEeCCCH-HHHHHHHHHHHHCCCEEEEe
Confidence 567999998 64 32 44778888899999988876
No 21
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.45 E-value=57 Score=19.09 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=25.6
Q ss_pred eecceEEEe-ChhhHHHHHHHHHHHHHcCCCcceeC
Q psy10290 66 TPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLG 100 (128)
Q Consensus 66 ~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l~ 100 (128)
++-|.|.+. +.+ .+.+++..+.+++.|+.+|.+.
T Consensus 62 ~~~G~L~v~l~G~-~~~~~~ai~~L~~~~v~vEvl~ 96 (106)
T 3dhx_A 62 VKFGIMLTEMHGT-QQDTQAAIAWLQEHHVKVEVLG 96 (106)
T ss_dssp EEEEEEEEEEESC-HHHHHHHHHHHHHTTCEEEEEE
T ss_pred eeEEEEEEEEeCC-HHHHHHHHHHHHHCCCEEEEee
Confidence 578999888 543 2457777888899999888763
No 22
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=26.80 E-value=73 Score=18.31 Aligned_cols=33 Identities=12% Similarity=0.059 Sum_probs=25.0
Q ss_pred eecceEEEe-ChhhHHHHHHHHHHHHHcCCCccee
Q psy10290 66 TPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLL 99 (128)
Q Consensus 66 ~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l 99 (128)
++.|.|.+. .-++ +.+++..+.+++.|+.+|.+
T Consensus 64 ~~~G~L~v~l~G~~-~~~~~ai~~L~~~~v~vEvl 97 (101)
T 2qrr_A 64 VKFGMMVAELFGNE-QDDSAAIEYLRENNVKVEVL 97 (101)
T ss_dssp EEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEEE
T ss_pred eeEEEEEEEEeCCH-HHHHHHHHHHHHcCCEEEEe
Confidence 577999998 5432 34677788889999988876
No 23
>2qsw_A Methionine import ATP-binding protein METN 2; ABC transporter, structural genomics, APC87322.1, PSI-2, protein structure initiative; 1.50A {Enterococcus faecalis} SCOP: d.58.18.13
Probab=26.56 E-value=69 Score=18.37 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=25.1
Q ss_pred eecceEEEe-ChhhHHHHHHHHHHHHHcCCCccee
Q psy10290 66 TPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLL 99 (128)
Q Consensus 66 ~~~G~L~~a-~~~~~~~l~~~~~~~~~~G~~~e~l 99 (128)
++.|.|.+. .-+. +.+++..+.+++.|+.+|.+
T Consensus 64 ~~~G~L~v~l~G~~-~~~~~ai~~L~~~~v~vEvl 97 (100)
T 2qsw_A 64 GAVGSLYIQLLGEE-QNILAAIEGLRKLRVETEVI 97 (100)
T ss_dssp EEEEEEEEEEESCH-HHHHHHHHHHHHTTCEEEES
T ss_pred eeEEEEEEEEECCH-HHHHHHHHHHHHcCCEEEEc
Confidence 567999998 5432 34677788889999988877
No 24
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=22.79 E-value=57 Score=18.18 Aligned_cols=36 Identities=17% Similarity=0.134 Sum_probs=17.6
Q ss_pred cccccccchhhhhcCc---HHHHHHHHHHHHHHHHHHHh
Q psy10290 17 ASTTLSVGGLRQQFSL---RENIEMSLFGAEFLRNIKHH 52 (128)
Q Consensus 17 gaS~~~~g~~~~~~~~---~~~~~la~~s~~~~~~~~~~ 52 (128)
||||.++|-....... .+.....+.+.+....+...
T Consensus 1 ~~sg~~~~~~~~kdp~~pKrP~~af~lf~~~~r~~~~~~ 39 (87)
T 2e6o_A 1 GSSGSSGGTVSATSPNKCKRPMNAFMLFAKKYRVEYTQM 39 (87)
T ss_dssp CCCCCCCSSCCCCCCSSCCCCCCHHHHHHHHTHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6777777765433321 12334444444555444433
No 25
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=22.68 E-value=1.6e+02 Score=19.06 Aligned_cols=43 Identities=19% Similarity=0.234 Sum_probs=29.5
Q ss_pred ceeecceEEEe-ChhhHHHHHHHHHH-H-HHcCC--CcceeCHhhHHHh
Q psy10290 64 NFTPNGYLFCA-SQDGAATLEKNHQL-Q-KELGA--KNVLLGPEQLKAK 107 (128)
Q Consensus 64 ~~~~~G~L~~a-~~~~~~~l~~~~~~-~-~~~G~--~~e~l~~~~~~~~ 107 (128)
-|-++|.+.+. +. +.+.++..++. + ..+|+ ++-+.|.+++++.
T Consensus 41 TyI~SGNvvF~s~~-~~~~l~~~ie~~l~~~fg~~v~v~vrs~~el~~i 88 (183)
T 2hiy_A 41 SYINSGNIFFTSID-SKAQLVEKLETFFAVHYPFIQSFSLLSLEDFEAE 88 (183)
T ss_dssp EETTTTEEEEEECS-CHHHHHHHHHHHHHHHCTTCCCCEEEEHHHHHHH
T ss_pred EEEecCCEEEecCC-CHHHHHHHHHHHHHHhcCCCCCEEEecHHHHHHH
Confidence 57899999998 55 55566655544 2 34775 4557799888764
No 26
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A
Probab=20.63 E-value=1.6e+02 Score=18.02 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.9
Q ss_pred hhhHHHHHHHHHHHHHcCCCcceeCHhhHHHhCCCCC
Q psy10290 76 QDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLN 112 (128)
Q Consensus 76 ~~~~~~l~~~~~~~~~~G~~~e~l~~~~~~~~~P~l~ 112 (128)
++..+..+.....+++.|++. ++.++++-+.-|-+.
T Consensus 68 ~d~~~Na~~ais~ArklG~~~-~l~pEDIve~~pK~i 103 (124)
T 1wjo_A 68 DDKHNNAKYAVSMARRIGARV-YALPEDLVEVKPKMV 103 (124)
T ss_dssp HHHHHHHHHHHHHHHHTCCSC-CCCHHHHHHTCTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCCc-ccCHHHHhcCcchhh
Confidence 344566777777788999996 999999998877544
Done!