RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10290
(128 letters)
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 124 bits (314), Expect = 3e-35
Identities = 19/128 (14%), Positives = 42/128 (32%), Gaps = 20/128 (15%)
Query: 13 LYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLF 72
+ S+ R FS N ++ + + D+ +GYLF
Sbjct: 58 APGSGDSGRSMAAFRTFFSSTMNRLVAGSTVRLFEDAQ-------RGGEDLGLVKSGYLF 110
Query: 73 CASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPW------------LNTDDIALAC 120
++ +E+ + E G +++ PE+L+ + L D+
Sbjct: 111 VYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEVLGVGDVE-GA 169
Query: 121 LGLEKEGW 128
+ + G+
Sbjct: 170 VLIRSAGF 177
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 94.2 bits (235), Expect = 4e-24
Identities = 18/117 (15%), Positives = 31/117 (26%), Gaps = 7/117 (5%)
Query: 12 SLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYL 71
+ ST S + + ++ F N +P +
Sbjct: 41 AQPGYHSTGRSAAHYTVAYGTPQVRALTAASRAFFDNPP------AGFCEHPLLSPRPEM 94
Query: 72 FCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW 128
D L + ++ K L + LL EQ + P L D + A
Sbjct: 95 VVDFSDDPEELRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYD-PTGAD 150
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 69.1 bits (170), Expect = 4e-15
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 9/97 (9%)
Query: 24 GGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 82
G+RQQF+ N+ + E + +E +F GYLF + T
Sbjct: 49 TGIRQQFNDEANVRVMKRSVELWKKY--------SEEYGFSFKQTGYLFLLYDDEEVKTF 100
Query: 83 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALA 119
++N ++Q + G L+ PE+ K P L+ ++ A
Sbjct: 101 KRNIEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAA 137
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 61.1 bits (149), Expect = 3e-12
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 11/97 (11%)
Query: 24 GGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN--FTPNGYLFCA-SQDGAA 80
+R + E+ + + + ++ + + F+ G L A +
Sbjct: 67 TIIRSNYLWDESAGIYEKSLKLWEQL--------PEDLEYDFLFSQRGVLNLAHTLGDVR 118
Query: 81 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIA 117
+ + K G L P Q+K P +NT D
Sbjct: 119 ESVRRVEANKLNGVDAEWLDPSQVKEACPIINTSDDI 155
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 56.6 bits (137), Expect = 9e-11
Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 10/111 (9%)
Query: 13 LYARASTTLSVGGLRQQFS-LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN-FTPNGY 70
+ S +R + RE + ++L E + E E FT G
Sbjct: 38 PHTNGSHHGDTRIIRHAYGEGREYVPLALRSQELWYEL--------EKETHHKIFTKTGV 89
Query: 71 LFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACL 121
L + +A + + + KE LL +++ ++P + + A
Sbjct: 90 LVFGPKGESAFVAETMEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIF 140
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 54.8 bits (132), Expect = 4e-10
Identities = 13/111 (11%), Positives = 31/111 (27%), Gaps = 12/111 (10%)
Query: 15 ARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN-FTPNGYLFC 73
T+ + R Q++ + ++L R + E + G L+
Sbjct: 41 ENGGTSGAERHWRLQYTQEDLFRLTLETLPLWRAL--------ESRCERRLIHEIGSLWF 92
Query: 74 ASQDGAAT---LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACL 121
D + + +L + L ++ +F + L
Sbjct: 93 GDTDVVTNEGQISGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFL 143
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 44.1 bits (104), Expect = 2e-06
Identities = 12/98 (12%), Positives = 20/98 (20%), Gaps = 9/98 (9%)
Query: 25 GLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEK 84
+ + N ++ +N + + G L A
Sbjct: 60 YSNNKDEIEVNEILAEEAFNGWKN---------DPLFKPYYHDTGLLMSACSQEGLDRLG 110
Query: 85 NHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLG 122
E L PEQ + P G
Sbjct: 111 VRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKG 148
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 37.2 bits (87), Expect = 5e-04
Identities = 13/95 (13%), Positives = 27/95 (28%), Gaps = 11/95 (11%)
Query: 24 GGLRQQFSLREN---IEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGA 79
G L E + ++ + + + D+ G A S++
Sbjct: 61 GMLGAHAECEERDAFFDFAMHSQRLYKGLGEE--LYALSGVDIRQHNGGMFKLAFSEEDV 118
Query: 80 ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTD 114
L + L E++ K P+ + D
Sbjct: 119 LQLRQMDDLDSV-----SWYSKEEVLEKEPYASGD 148
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 33.5 bits (77), Expect = 0.011
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 58 EDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDI 116
++ F G L A ++ A L++ G + LL P + + +P L+ ++I
Sbjct: 77 TEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLDGENI 136
Query: 117 ALA 119
Sbjct: 137 LGG 139
>3k1t_A Glutamate--cysteine ligase GSHA; putative gamma-glutamylcysteine
synthetase; HET: MSE; 1.90A {Methylobacillus flagellatus
KT}
Length = 432
Score = 27.6 bits (61), Expect = 1.4
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 62 DVNFTPNGY--LFCASQDGAATLEKNHQLQKELGAKNVLLGPE 102
D N P G+ L + A+ +LL PE
Sbjct: 61 DTNLFPGGFNNLNPDFLPLCIQAAMVAVEKICPDARRLLLIPE 103
>1qlm_A Methenyltetrahydromethanopterin cyclohydrolase; methanogenesis,
biological methanogenesis; 2.0A {Methanopyrus kandleri}
SCOP: d.147.1.1
Length = 316
Score = 27.1 bits (60), Expect = 1.4
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 93 GAKNVLLGPEQLKAKFPW---LNTDDIALACLGLEKEGW 128
G V L + + TD A++ L +K GW
Sbjct: 59 GLATVELTEFEHDGLCLPAVQVTTDHPAVSTLAAQKAGW 97
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 27.5 bits (62), Expect = 1.6
Identities = 13/49 (26%), Positives = 16/49 (32%), Gaps = 14/49 (28%)
Query: 27 RQQF---------SLRENIEMSL---FGAE--FLRNIKHHCHVIGEDEP 61
+Q+F LREN+ MSL G L I P
Sbjct: 496 KQRFAQVTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESARTIKLRSP 544
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 27.1 bits (61), Expect = 2.1
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 14/49 (28%)
Query: 27 RQQF---------SLRENIEMSL---FGAE--FLRNIKHHCHVIGEDEP 61
RQ F SLRE MSL G L + ++ + P
Sbjct: 500 RQNFSQVTNPPIDSLRERRVMSLKTRLGNLGNILDEDETQTRLLQLESP 548
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 26.6 bits (58), Expect = 2.2
Identities = 6/17 (35%), Positives = 7/17 (41%)
Query: 62 DVNFTPNGYLFCASQDG 78
+V F NGY D
Sbjct: 219 EVKFADNGYWMVVECDQ 235
>1lqa_A TAS protein; TIM barrel, structure 2 function project, S2F,
structural GE oxidoreductase; HET: NDP; 1.60A
{Escherichia coli} SCOP: c.1.7.1
Length = 346
Score = 26.7 bits (60), Expect = 2.3
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 10/42 (23%)
Query: 72 FCASQD-------GAATLEKNHQLQKELGAKNVLLGPEQLKA 106
F Q GA T++ QL+ + + ++ L + L
Sbjct: 295 FVRRQPFVASTLLGATTMD---QLKTNIESLHLELSEDVLAE 333
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics,
APC60148, GNAT famil protein structure initiative;
2.15A {Bacteroides thetaiotaomicron}
Length = 181
Score = 25.7 bits (56), Expect = 4.5
Identities = 12/58 (20%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 26 LRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLE 83
L + F E E+ R H ++I +D+ P G++ D +E
Sbjct: 25 LVESFPPEEYRELEHLREYTDRIGNFHNNIIFDDD-----LPIGFITYWDFDEFYYVE 77
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 5.1
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 11/35 (31%)
Query: 4 KHILASLVSLYARAST-TLSVGGLRQQFSLRENIE 37
K + ASL LYA S L++ + +E
Sbjct: 23 KKLQASL-KLYADDSAPALAI---------KATME 47
>3clm_A Transaldolase; YP_208650.1, structural genomics, joint cente
structural genomics, JCSG, protein structure initiative,
PS transferase; HET: MSE; 1.14A {Neisseria gonorrhoeae}
Length = 352
Score = 25.6 bits (56), Expect = 5.8
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 75 SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 127
++D T+E+ +L + KN ++ K P TD A L +G
Sbjct: 114 AKDAQGTVEEARRLHAAIARKNAMI-------KVP--ATDAGIDALETLVSDG 157
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 25.5 bits (55), Expect = 6.3
Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 11/97 (11%)
Query: 4 KHILASLVSLYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHH---CHVIGEDE 60
K++L +L+ Y T S +F+ R +I S+ E I + ++
Sbjct: 619 KNLLYALLDFYVIVEKTGSSSQFYDKFNSRYSI--SIILEELYYKIPSYKNQLIWQSQNN 676
Query: 61 PD-----VNFTPNGYLFCASQDGAATLEKNHQLQKEL 92
D V N F + G + L + H +Q EL
Sbjct: 677 ADFFVRFVARMLNDLTFLLDE-GLSNLAEVHNIQNEL 712
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 6.5
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 19/53 (35%)
Query: 44 EFLRNIKHHCHVIGEDEPDVN------FTPNGYLFCASQDGAATLEKNHQLQK 90
+FL I+ + + + +F E + Q+Q+
Sbjct: 550 DFLPKIEENLIC----SKYTDLLRIALMAEDEAIF---------EEAHKQVQR 589
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.410
Gapped
Lambda K H
0.267 0.0817 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,918,551
Number of extensions: 99935
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 222
Number of HSP's successfully gapped: 25
Length of query: 128
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 45
Effective length of database: 4,384,350
Effective search space: 197295750
Effective search space used: 197295750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.3 bits)