RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10290
         (128 letters)



>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 325

 Score = 29.5 bits (64), Expect = 0.094
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 44  EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDG 78
           + ++        +G  +  V  T NG +   S DG
Sbjct: 284 KCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318


>d1qlma_ d.147.1.1 (A:) Methenyltetrahydromethanopterin
           cyclohydrolase {Archaeon Methanopyrus kandleri [TaxId:
           2320]}
          Length = 316

 Score = 28.5 bits (64), Expect = 0.21
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 3/39 (7%)

Query: 93  GAKNVLLGPEQLKAKFPW---LNTDDIALACLGLEKEGW 128
           G   V L   +          + TD  A++ L  +K GW
Sbjct: 59  GLATVELTEFEHDGLCLPAVQVTTDHPAVSTLAAQKAGW 97


>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear
          cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 130

 Score = 27.0 bits (59), Expect = 0.41
 Identities = 12/35 (34%), Positives = 15/35 (42%)

Query: 54 HVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQL 88
            +G  E    F   G   CA  DGAA + +N  L
Sbjct: 3  SFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPL 37


>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
           central and FMN domains {Synechocystis sp. [TaxId:
           1143]}
          Length = 809

 Score = 27.6 bits (61), Expect = 0.47
 Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 14/44 (31%)

Query: 27  RQQF---------SLRENIEMSL---FGAE--FLRNIKHHCHVI 56
           +Q+F          LREN+ MSL    G     L         I
Sbjct: 66  KQRFAQVTNPPIDPLRENLVMSLAMFLGKRGNLLEPKAESARTI 109


>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
           central and FMN domains {Azospirillum brasilense [TaxId:
           192]}
          Length = 771

 Score = 26.8 bits (59), Expect = 0.88
 Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 18/51 (35%)

Query: 27  RQQF---------SLRENIEMSL---FGAEFLRNI----KHHCHVIGEDEP 61
           RQ F         SLRE   MSL    G     NI    +    ++  + P
Sbjct: 78  RQNFSQVTNPPIDSLRERRVMSLKTRLGNL--GNILDEDETQTRLLQLESP 126


>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 287

 Score = 25.3 bits (53), Expect = 2.6
 Identities = 3/37 (8%), Positives = 12/37 (32%), Gaps = 4/37 (10%)

Query: 42  GAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDG 78
             + ++ +  H   +     ++ +     L  +  D 
Sbjct: 247 PMKIIKALNAHKDGVN----NLLWETPSTLVSSGADA 279


>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 24.8 bits (52), Expect = 4.7
 Identities = 3/16 (18%), Positives = 7/16 (43%)

Query: 63  VNFTPNGYLFCASQDG 78
           V+ +  G +     +G
Sbjct: 190 VDISERGLIATGFNNG 205


>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 236

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 87  QLQKELGAKNVLLGPEQLKA 106
           + +  LG  NVL+  +QL  
Sbjct: 18  KFRALLGDDNVLVESDQLVP 37


>d1a8ra_ d.96.1.1 (A:) GTP cyclohydrolase I {Escherichia coli
           [TaxId: 562]}
          Length = 221

 Score = 23.8 bits (51), Expect = 6.7
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 9/38 (23%)

Query: 15  ARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHH 52
           +  +TT   G  +   + R          EFLR ++HH
Sbjct: 192 SATTTTSLGGLFKSSQNTRH---------EFLRAVRHH 220


>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency
          virus type 1 [TaxId: 11676]}
          Length = 316

 Score = 23.9 bits (52), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 51 HHCH--VIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 86
            C+  VI +  P V+F P    +CA   G A L+ N+
Sbjct: 48 GSCNTSVITQACPKVSFEPIPIHYCAPA-GFAILKCNN 84


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0689    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 456,866
Number of extensions: 18526
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 11
Length of query: 128
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 53
Effective length of database: 1,377,846
Effective search space: 73025838
Effective search space used: 73025838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.3 bits)