BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy10292
         (168 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2GJL|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase
 pdb|2GJN|A Chain A, Crystal Structure Of 2-Nitropropane Dioxygenase Complexed
           With Fmn And Substrate
          Length = 328

 Score = 33.5 bits (75), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%)

Query: 62  NVQLQVFKNMTPTPFI---TTYLENGSEMLIDVDNKSKDEIHD---HVLKVLGKSEQVLK 115
            V L +     P P+       +E G  ++    N   + I +   H +KV+ K   V  
Sbjct: 71  GVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRH 130

Query: 116 AEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDS 157
           A    R   D  +  GF+C  H     PG+   PGLV LP +
Sbjct: 131 ALKAERLGVDAVSIDGFECAGH-----PGEDDIPGLVLLPAA 167


>pdb|3MMI|A Chain A, Crystal Structure Of The Globular Tail Of Myo4p
 pdb|3MMI|B Chain B, Crystal Structure Of The Globular Tail Of Myo4p
          Length = 386

 Score = 28.5 bits (62), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 13  TLKYLNAGRIVFKDKI-KIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNV 63
           TLKYLN   ++F D I K  A+N+ +  E  R  +  V W   +I+   PN+
Sbjct: 219 TLKYLNV--MLFNDLITKCPALNWKYGYEVDRNIERLVSWFEPRIEDVRPNL 268


>pdb|3DOA|A Chain A, The Crystal Structure Of The Fibrinogen Binding Protein
           From Staphylococcus Aureus
          Length = 288

 Score = 28.1 bits (61), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)

Query: 60  NPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDH-----VLKVLGKSEQVL 114
           NP +  +VF+       I +  + G++  I++D KSKDEI D      +L+++GK   ++
Sbjct: 70  NPPMFARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLI 129


>pdb|3UEB|A Chain A, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
 pdb|3UEB|B Chain B, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
 pdb|3UEB|C Chain C, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
 pdb|3UEB|D Chain D, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
 pdb|3UEB|E Chain E, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
 pdb|3UEB|F Chain F, Crystal Structure Of Ton_0450 From Thermococcus
          Onnurineus Na1
          Length = 110

 Score = 26.9 bits (58), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 25/46 (54%)

Query: 47 EFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVD 92
          ++VF H T+ + K+  V +++ +  T    I  YLE    + +DVD
Sbjct: 36 DYVFDHLTRSEVKDIEVTMRINREETLDLEIEVYLEVPIFVKVDVD 81


>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
          Complex With Adp
 pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
          Complex With Adp
 pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
          Complex With Adp
 pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
          Complex With Adp
          Length = 286

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)

Query: 57 QFKNPNV-QLQ-VFKNMTPTPFITTYLENGS 85
          QF +PNV  L+ V    TP   IT ++ENGS
Sbjct: 64 QFDHPNVIHLEGVVTKSTPVMIITEFMENGS 94


>pdb|3ROF|A Chain A, Crystal Structure Of The S. Aureus Protein Tyrosine
           Phosphatase Ptpa
          Length = 158

 Score = 26.2 bits (56), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 11/107 (10%)

Query: 5   IGEAPIRRTLKYLNAGRIVFKDKI-KIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNV 63
           +GE P   T K LN   I F   I ++F    +F+             +   I+  NPN+
Sbjct: 51  LGEPPHEGTQKILNKHNIPFDGMISELFEATDDFDYIVAMDQS-----NVDNIKSINPNL 105

Query: 64  QLQVFK-----NMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLK 105
           + Q+FK     NM  +     Y  N  E + D+   S D + D+++K
Sbjct: 106 KGQLFKLLEFSNMEESDVPDPYYTNNFEGVYDMVLSSCDNLIDYIVK 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,286,278
Number of Sequences: 62578
Number of extensions: 211953
Number of successful extensions: 569
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 565
Number of HSP's gapped (non-prelim): 17
length of query: 168
length of database: 14,973,337
effective HSP length: 92
effective length of query: 76
effective length of database: 9,216,161
effective search space: 700428236
effective search space used: 700428236
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)