BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10292
(168 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VY28|RT25_DROME Probable 28S ribosomal protein S25, mitochondrial OS=Drosophila
melanogaster GN=mRpS25 PE=2 SV=1
Length = 167
Score = 216 bits (551), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 93/161 (57%), Positives = 127/161 (78%)
Query: 1 MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
M F+ G PIRRTLKYLNAG++V KDK++IF++NYN +H GA++FVFW+ QIQFKN
Sbjct: 1 MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKN 60
Query: 61 PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
P VQ+ KNMTP+PF+ Y ++G +MLID+D++++++I DH++KV+GK+ + L AE
Sbjct: 61 PEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERL 120
Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
+E KDNPANFG+ C +HCIC+IPGQ+ CPG V LPD MRGK
Sbjct: 121 KESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGK 161
>sp|P82669|RT25_BOVIN 28S ribosomal protein S25, mitochondrial OS=Bos taurus GN=MRPS25
PE=1 SV=2
Length = 173
Score = 174 bits (440), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 2/158 (1%)
Query: 6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
G PIRRTL+YL+ G +VFKD +K+ +NYN + E GA++FVF++ QIQ+KNP VQ+
Sbjct: 5 GRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64
Query: 66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
+FKNMTPTPF+ YL++G ++L+DV+ KS EI +HV K+LGK+E+ L+ E RE+
Sbjct: 65 MLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQEREQLS 124
Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
+PA+FG + C + CIC++ GQ+ CP +V LP + GK
Sbjct: 125 HPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTGK 162
>sp|P82663|RT25_HUMAN 28S ribosomal protein S25, mitochondrial OS=Homo sapiens GN=MRPS25
PE=1 SV=1
Length = 173
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
G PIRRTL+YL+ G +VFKD +K+ +NYN + E GA++FVF++ QIQ+KNP VQ+
Sbjct: 5 GRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64
Query: 66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
+FKNMTP+PF+ YL++G ++L+DV+ KS EI +H+ K+LGK+E+ L+ E +++
Sbjct: 65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLS 124
Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
+PANFG + C + CIC++ GQ+ CP LV LP MRGK
Sbjct: 125 HPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGK 162
>sp|Q4QR80|RT25_RAT 28S ribosomal protein S25, mitochondrial OS=Rattus norvegicus
GN=Mrps25 PE=2 SV=1
Length = 171
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 2/158 (1%)
Query: 6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
G PIRRTL+YL +G +VFK+ +K+ +NYN + E GA++FVF++ QIQ+KNP VQ+
Sbjct: 5 GRFPIRRTLQYLGSGDVVFKESVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64
Query: 66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
+FKNMTP+PF+ YLE+G ++L+DV+ KS EI +H+ K+LGK E+ L+ E + ++++
Sbjct: 65 MLFKNMTPSPFLRFYLESGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEKQQRF 124
Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
+P NFG + C + C+C++ GQ+ CPGLV LP M GK
Sbjct: 125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162
>sp|Q9D125|RT25_MOUSE 28S ribosomal protein S25, mitochondrial OS=Mus musculus GN=Mrps25
PE=1 SV=1
Length = 171
Score = 160 bits (404), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 2/158 (1%)
Query: 6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
G PIRRTL+YL G +VFK+ +KI +NYN E GA++FVF++ QIQ+KNP VQ+
Sbjct: 5 GRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQI 64
Query: 66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
+FKNMTP+PF+ YL++G ++L+DV+ KS EI +H+ K+LGK E+ L+ E + ++++
Sbjct: 65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRF 124
Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
+P NFG + C + C+C++ GQ+ CPGLV LP M GK
Sbjct: 125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162
>sp|Q9N361|RT25_CAEEL Probable 28S ribosomal protein S25, mitochondrial OS=Caenorhabditis
elegans GN=Y55F3AM.1 PE=3 SV=1
Length = 170
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 1/162 (0%)
Query: 1 MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFN-AENHRGAKEFVFWHFTQIQFK 59
M F+ G P+RRT YL G++ +D + +F++ ++ N GA++FV+W++ Q+Q+
Sbjct: 1 MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQSGARDFVYWNWAQLQYH 60
Query: 60 NPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAI 119
NP VQL + TPF YL +G E+L D+D ++EI + K LGK+E V + E +
Sbjct: 61 NPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHL 120
Query: 120 AREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
K NPA+FG K E+ C+C++ GQ C GL+R P + GK
Sbjct: 121 ESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAPQCVTGK 162
>sp|Q99N89|RM43_MOUSE 39S ribosomal protein L43, mitochondrial OS=Mus musculus GN=Mrpl43
PE=2 SV=1
Length = 183
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%)
Query: 17 LNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPF 76
L+ G + +++ +++ + +A + RGA+EFV T +NP V + V P
Sbjct: 15 LHNGLGRYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPR 74
Query: 77 ITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKS 110
I NG+ +V++KS +EI V K+ +S
Sbjct: 75 IVAEYLNGAVREENVNSKSVEEIKSLVQKLADQS 108
>sp|Q95KE5|RM43_BOVIN 39S ribosomal protein L43, mitochondrial OS=Bos taurus GN=MRPL43
PE=2 SV=2
Length = 159
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 20 GRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITT 79
GR V +++ + + + +A + RGA+EFV T +NP V + V P +
Sbjct: 20 GRYV--QQLQRLSFSLSRDAPSSRGAREFVEREVTDFARRNPGVVIYVNPRPCCVPRVVA 77
Query: 80 YLENGSEMLIDVDNKSKDEIHDHVLKVLGKS 110
NG+ ++ KS +EI V K+ +S
Sbjct: 78 EYLNGAVREESLNCKSVEEIATLVQKLADQS 108
>sp|Q9I4V0|2NPD_PSEAE Nitronate monooxygenase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=PA1024 PE=1
SV=1
Length = 328
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 41/102 (40%), Gaps = 11/102 (10%)
Query: 62 NVQLQVFKNMTPTPFI---TTYLENGSEMLIDVDNKSKDEIHD---HVLKVLGKSEQVLK 115
V L + P P+ +E G ++ N + I + H +KV+ K V
Sbjct: 71 GVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGNDPGEHIAEFRRHGVKVIHKCTAVRH 130
Query: 116 AEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDS 157
A R D + GF+C H PG+ PGLV LP +
Sbjct: 131 ALKAERLGVDAVSIDGFECAGH-----PGEDDIPGLVLLPAA 167
>sp|Q6S5L9|SHC4_MOUSE SHC-transforming protein 4 OS=Mus musculus GN=Shc4 PE=1 SV=1
Length = 626
Score = 33.1 bits (74), Expect = 0.88, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 68 FKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKS--EQVLKAEAIAREKKD 125
FK P + T+ E+L VD +D HD+ + GK E + I + D
Sbjct: 342 FKQYLKNPSLNTW--EREEVL--VDGAPEDRDHDYYNSIPGKQPPEGGISDVRIQAQATD 397
Query: 126 NPANFGFKCEKHCICQIPGQITCPGLVR 153
A +CEK +C +PG TC G+ +
Sbjct: 398 QMAYCPIRCEK--LCYLPGNSTCSGVYK 423
>sp|P57075|UBS3A_HUMAN Ubiquitin-associated and SH3 domain-containing protein A OS=Homo
sapiens GN=UBASH3A PE=1 SV=1
Length = 661
Score = 32.0 bits (71), Expect = 1.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 26 DKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYL 81
D I+ FA+ + A G FW F+Q+ PN++L N+T F++ Y+
Sbjct: 167 DVIREFAMTFATEASLLAGTSVSRFWIFSQVPGHGPNLRLS---NLTRASFVSHYI 219
>sp|Q8N983|RM43_HUMAN 39S ribosomal protein L43, mitochondrial OS=Homo sapiens GN=MRPL43
PE=1 SV=1
Length = 215
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 43/102 (42%)
Query: 9 PIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVF 68
P R L+ G + +++ + + + + + RGA+EFV +NP V + V
Sbjct: 7 PSRFLASVLHNGLGRYVQQLQRLSFSVSRDGASSRGAREFVEREVIDFARRNPGVVIYVN 66
Query: 69 KNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKS 110
P + NG+ + KS +EI V K+ +S
Sbjct: 67 SRPCCVPRVVAEYLNGAVREESIHCKSVEEISTLVQKLADQS 108
>sp|Q69ZS6|SV2C_MOUSE Synaptic vesicle glycoprotein 2C OS=Mus musculus GN=Sv2c PE=1 SV=2
Length = 727
Score = 30.8 bits (68), Expect = 4.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 21 RIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMT--PTPFIT 78
R V KDK F+IN+ + H G E+ F ++FK+ + VFK+ T +
Sbjct: 471 RNVQKDKYANFSINFTMENQIHTGM-EYENGRFLGVKFKSVTFKDSVFKSCTFDDVTSVN 529
Query: 79 TYLEN 83
TY +N
Sbjct: 530 TYFKN 534
>sp|Q9Z2I6|SV2C_RAT Synaptic vesicle glycoprotein 2C OS=Rattus norvegicus GN=Sv2c PE=1
SV=1
Length = 727
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 21 RIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMT--PTPFIT 78
R V KDK F+IN+ + H G E+ F ++FK+ + VFK+ T +
Sbjct: 471 RNVQKDKYANFSINFTMENQVHTGM-EYDNGRFLGVKFKSVTFKDSVFKSCTFDDVTSVN 529
Query: 79 TYLEN 83
TY +N
Sbjct: 530 TYFKN 534
>sp|Q7MWV3|COAE_PORGI Dephospho-CoA kinase OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=coaE PE=3 SV=1
Length = 202
Score = 30.4 bits (67), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 108 GKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVNP 165
G S + ++ +++E++ + A G H + P + P +VR+ +++R K+ NP
Sbjct: 144 GSSAETMRQRMLSQEREQSLAKAG---ADHTVLNAPPHLLVPQVVRIIETVRTKRPNP 198
>sp|P12247|CO3_RABIT Complement C3 alpha chain (Fragment) OS=Oryctolagus cuniculus GN=C3
PE=2 SV=1
Length = 726
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 37 FNAENHRGAKEFVFWHFTQ-IQFKNPNVQLQVFKNMTPTPFITTYL 81
F+ E + A E + +TQ + FK PN F N P+ ++T Y+
Sbjct: 100 FSLEKRQEALELIKKGYTQQLAFKQPNSAYAAFLNRAPSTWLTAYV 145
>sp|Q8PZN0|Y462_METMA Putative ABC transporter ATP-binding protein MM_0462
OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647
/ Goe1 / Go1 / JCM 11833 / OCM 88) GN=MM_0462 PE=3 SV=2
Length = 453
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 92 DNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGL 151
D+KS EI V V S+ + A + ++ PAN G+ E+ C + + GL
Sbjct: 71 DSKSLREIRKSVGIVFQNSDDQIFAPTVYQDVAFGPANLGYSKERVDAC-VQSALEYVGL 129
Query: 152 VRLPD 156
+RL D
Sbjct: 130 IRLKD 134
>sp|B4S3F3|F16PA_PROA2 Fructose-1,6-bisphosphatase class 1 OS=Prosthecochloris aestuarii
(strain DSM 271 / SK 413) GN=fbp PE=3 SV=1
Length = 332
Score = 29.6 bits (65), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 60 NPNVQLQVFKNMTPTPFITTYL----ENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLK 115
+PN +L++ P FI NG E ++D++ E+H +G E VLK
Sbjct: 268 HPNGKLRLMYEANPLAFICEQAGGRATNGKERILDIN---PTELHQRTPLYIGSKEDVLK 324
Query: 116 AEAIARE 122
AE +E
Sbjct: 325 AEEFEKE 331
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,854,312
Number of Sequences: 539616
Number of extensions: 2674737
Number of successful extensions: 6107
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 6090
Number of HSP's gapped (non-prelim): 30
length of query: 168
length of database: 191,569,459
effective HSP length: 109
effective length of query: 59
effective length of database: 132,751,315
effective search space: 7832327585
effective search space used: 7832327585
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)