Query psy10292
Match_columns 168
No_of_seqs 157 out of 311
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:43:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s3a_A NADH-ubiquinone oxidore 100.0 2E-28 6.9E-33 179.5 10.6 92 19-110 8-101 (102)
2 2a2p_A Selenoprotein M, SELM p 92.4 0.68 2.3E-05 34.7 8.0 75 26-106 12-89 (129)
3 2a4h_A Selenoprotein SEP15; re 85.9 0.94 3.2E-05 33.9 4.4 80 27-111 19-100 (126)
4 4adi_A E1 envelope glycoprotei 61.5 2.8 9.7E-05 35.4 1.4 16 136-151 47-62 (473)
5 1mek_A Protein disulfide isome 59.8 33 0.0011 22.3 6.8 79 30-109 27-118 (120)
6 3or5_A Thiol:disulfide interch 58.3 43 0.0015 23.2 9.0 40 73-112 116-155 (165)
7 1wgr_A Growth factor receptor- 54.4 18 0.0006 25.7 4.4 34 76-109 11-45 (100)
8 2l61_A EC protein I/II; metall 51.7 6.6 0.00023 21.4 1.3 18 131-152 1-18 (26)
9 2ggt_A SCO1 protein homolog, m 51.3 37 0.0013 23.5 5.9 28 82-109 135-162 (164)
10 2zuv_A Lacto-N-biose phosphory 50.3 55 0.0019 30.9 8.0 68 42-110 185-255 (759)
11 2dj1_A Protein disulfide-isome 49.0 59 0.002 22.0 8.3 79 31-111 38-127 (140)
12 4euy_A Uncharacterized protein 44.7 60 0.0021 20.9 5.8 73 30-107 21-104 (105)
13 2yzu_A Thioredoxin; redox prot 43.1 29 0.00098 22.1 3.9 57 53-110 40-108 (109)
14 2trx_A Thioredoxin; electron t 42.0 57 0.0019 20.8 5.3 73 31-108 24-108 (108)
15 1w4v_A Thioredoxin, mitochondr 41.6 55 0.0019 21.8 5.3 74 30-108 34-119 (119)
16 2lq4_p Lysophosphatidic acid r 38.8 11 0.00037 25.1 1.1 17 137-156 33-49 (80)
17 2npb_A Selenoprotein W; struct 37.8 49 0.0017 23.0 4.5 75 30-109 4-82 (96)
18 2o8i_A AGR_C_4230P, hypothetic 36.2 33 0.0011 26.0 3.7 38 83-120 111-148 (165)
19 3eyt_A Uncharacterized protein 35.8 1E+02 0.0036 21.0 10.1 90 14-110 48-154 (158)
20 2q37_A OHCU decarboxylase; 2-O 35.6 32 0.0011 26.7 3.5 38 83-120 127-164 (181)
21 2o8v_B Thioredoxin 1; disulfid 35.4 75 0.0026 21.6 5.3 74 30-108 43-128 (128)
22 1ixt_A Spasmodic protein TX9A- 35.4 20 0.00069 19.4 1.6 14 131-144 9-22 (27)
23 2k6v_A Putative cytochrome C o 34.5 49 0.0017 23.1 4.3 89 10-106 51-171 (172)
24 3tco_A Thioredoxin (TRXA-1); d 33.9 78 0.0027 20.0 4.9 72 31-107 25-108 (109)
25 2ppt_A Thioredoxin-2; thiredox 33.8 77 0.0026 22.5 5.3 76 30-110 67-154 (155)
26 1gh2_A Thioredoxin-like protei 32.7 98 0.0033 19.8 7.8 72 31-108 25-107 (107)
27 1igq_A Transcriptional repress 32.0 44 0.0015 21.8 3.2 38 57-94 7-54 (62)
28 2o70_A OHCU decarboxylase; URI 31.9 31 0.0011 26.4 2.9 38 83-120 115-152 (174)
29 3hk0_A Growth factor receptor- 31.4 52 0.0018 26.7 4.3 30 76-105 10-40 (256)
30 4gmv_A RAS-associated and plec 30.5 50 0.0017 27.2 4.2 34 76-109 33-67 (281)
31 4e6f_A Uncharacterized protein 29.8 54 0.0018 25.7 3.9 27 82-108 21-50 (181)
32 3uvt_A Thioredoxin domain-cont 29.6 1.1E+02 0.0037 19.3 6.7 74 31-105 25-109 (111)
33 3p2a_A Thioredoxin 2, putative 28.9 96 0.0033 21.3 5.0 75 31-110 59-145 (148)
34 1dby_A Chloroplast thioredoxin 28.3 1.1E+02 0.0036 19.4 4.8 72 31-107 23-106 (107)
35 3o7i_A OHCU decarboxylase; lya 28.0 52 0.0018 25.6 3.6 38 83-120 136-173 (189)
36 1v98_A Thioredoxin; oxidoreduc 27.9 1.3E+02 0.0045 20.3 5.6 75 30-109 53-139 (140)
37 3e21_A HFAF1, FAS-associated f 26.8 1.1E+02 0.0037 18.4 4.3 20 93-112 2-21 (45)
38 2voc_A Thioredoxin; electron t 26.1 90 0.0031 20.3 4.2 75 31-110 21-107 (112)
39 2rli_A SCO2 protein homolog, m 25.4 1.7E+02 0.0058 20.2 7.6 91 11-108 43-164 (171)
40 1oaz_A Thioredoxin 1; immune s 24.6 70 0.0024 21.7 3.5 33 74-107 90-122 (123)
41 3idv_A Protein disulfide-isome 24.3 2.1E+02 0.0072 20.9 10.1 78 31-110 151-239 (241)
42 2kuc_A Putative disulphide-iso 24.2 1.5E+02 0.005 19.6 5.1 39 74-112 87-125 (130)
43 2es7_A Q8ZP25_salty, putative 23.9 82 0.0028 22.4 3.9 60 53-113 58-130 (142)
44 3hz4_A Thioredoxin; NYSGXRC, P 23.9 1E+02 0.0035 21.1 4.3 76 31-111 28-115 (140)
45 2i4a_A Thioredoxin; acidophIle 23.0 1.3E+02 0.0043 18.9 4.4 71 31-106 24-106 (107)
46 3ia1_A THIO-disulfide isomeras 22.8 1.1E+02 0.0037 20.8 4.3 39 74-112 110-148 (154)
47 1hym_A CMTI-V, hydrolyzed cucu 22.7 93 0.0032 18.7 3.3 20 54-73 23-42 (45)
48 3lor_A Thiol-disulfide isomera 22.7 1.8E+02 0.0063 19.6 10.6 96 9-111 44-158 (160)
49 1r26_A Thioredoxin; redox-acti 22.6 1.8E+02 0.0062 19.6 8.0 72 31-108 41-123 (125)
50 1ep7_A Thioredoxin CH1, H-type 22.1 1.6E+02 0.0054 18.7 5.3 72 31-108 28-111 (112)
51 2qgv_A Hydrogenase-1 operon pr 21.4 1.4E+02 0.0047 21.9 4.7 64 49-113 54-130 (140)
52 2e0q_A Thioredoxin; electron t 21.2 1.5E+02 0.0052 18.1 9.0 56 52-108 37-103 (104)
53 1via_A Shikimate kinase; struc 21.2 90 0.0031 22.2 3.7 27 86-112 143-169 (175)
54 3d22_A TRXH4, thioredoxin H-ty 20.7 2E+02 0.0068 19.2 7.1 73 31-109 50-133 (139)
55 2ju5_A Thioredoxin disulfide i 20.5 2.1E+02 0.0071 19.9 5.5 35 74-109 117-153 (154)
56 1fb6_A Thioredoxin M; electron 20.5 1.6E+02 0.0053 18.3 4.4 71 31-106 22-104 (105)
57 3qfa_C Thioredoxin; protein-pr 20.2 1.9E+02 0.0065 18.9 7.7 71 31-107 35-116 (116)
58 3erw_A Sporulation thiol-disul 20.1 49 0.0017 22.1 1.8 86 11-103 50-144 (145)
No 1
>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22
Probab=99.95 E-value=2e-28 Score=179.49 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=80.3
Q ss_pred ccCccccCC--ceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCH
Q psy10292 19 AGRIVFKDK--IKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSK 96 (168)
Q Consensus 19 ~g~~~l~~~--Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~ 96 (168)
+|++.|+++ |++|+|+||+++++|.|+|+||+++||+||++||+|+|+++++.+.+|++.++|+||+++.||++|++.
T Consensus 8 ~~~~~l~~~~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~l~n~s~ 87 (102)
T 1s3a_A 8 AASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSA 87 (102)
T ss_dssp ----------CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCH
T ss_pred hhhhcCCCCCceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEECCCCCH
Confidence 589999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCC
Q psy10292 97 DEIHDHVLKVLGKS 110 (168)
Q Consensus 97 ~eIl~~l~~l~g~s 110 (168)
+||+++|..++.++
T Consensus 88 ~eI~~~l~~l~~~~ 101 (102)
T 1s3a_A 88 DQVTRALENVLSGK 101 (102)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999987643
No 2
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=92.35 E-value=0.68 Score=34.74 Aligned_cols=75 Identities=16% Similarity=0.184 Sum_probs=56.2
Q ss_pred CCceEEEEEecCCC--CCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEE-EEEcCCCCHhHHHHH
Q psy10292 26 DKIKIFAINYNFNA--ENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEM-LIDVDNKSKDEIHDH 102 (168)
Q Consensus 26 ~~Vk~l~l~y~~~~--~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~-~Idv~nk~~~eIl~~ 102 (168)
..+.+..|.-|... +.--.+..||++..|. | |+|.|.... +..|.|.++=++|+++ +|++++.+.++|.+-
T Consensus 12 ~~yarA~lEvC~~CkL~~~PeIk~FIk~d~~~--y--~~v~Vkyi~--Ga~P~LvL~D~~G~e~E~I~Iekw~~d~I~ef 85 (129)
T 2a2p_A 12 RGLARGRVETCGGCQLNRLKEVKAFVTEDIQL--Y--HNLVMKHLP--GADPELVLLSRNYQELERIPLSQMTRDEINAL 85 (129)
T ss_dssp TTCCEEEEEEETTCCCSTTHHHHHHTTTHHHH--B--TTEEEEEES--SCCCEEEEECSSSCCCEEEECSSSCHHHHHHH
T ss_pred cccceEEEEECCCcccccchhHHHHHhCchhh--c--CceeEEEeC--CCCCEEEEecCCCCEEEEeecccCCHHHHHHH
Confidence 34566777777322 2366799999998886 4 667765544 4468999888888864 999999999999998
Q ss_pred HHHH
Q psy10292 103 VLKV 106 (168)
Q Consensus 103 l~~l 106 (168)
|.+.
T Consensus 86 L~e~ 89 (129)
T 2a2p_A 86 VQEL 89 (129)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 8764
No 3
>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23
Probab=85.95 E-value=0.94 Score=33.85 Aligned_cols=80 Identities=11% Similarity=0.076 Sum_probs=58.3
Q ss_pred CceEEEEEecCCCCC-ChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcE-EEEEcCCCCHhHHHHHHH
Q psy10292 27 KIKIFAINYNFNAEN-HRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSE-MLIDVDNKSKDEIHDHVL 104 (168)
Q Consensus 27 ~Vk~l~l~y~~~~~~-s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~-~~Idv~nk~~~eIl~~l~ 104 (168)
.+.+-.|..|...=+ ---+..||....|.. -|+|.|... .+..|.|..+=++|++ .+|++++.+.++|.+-|.
T Consensus 19 ~Ya~A~LEvC~CKL~~yPeVk~FI~~d~~~~---fpnL~vkyv--~Ga~P~LvLlD~~Ge~~E~I~IekW~tD~I~efL~ 93 (126)
T 2a4h_A 19 TYAKAILEVCTCKFRAYPQIQAFIQSGRPAK---FPNLQIKYV--RGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFE 93 (126)
T ss_dssp CCSCBEEECCSCTTTTCTTHHHHHHHTTGGG---CTTBCCCCC--SSCCCEEEECCSSSCCSEEEECSSSSCSHHHHHHH
T ss_pred ccCceEEEEcchhhhcCHHHHHHHccchhhh---CCceEEEEe--cCCCCEEEEecCCCCEeeEeccccCCHHHHHHHHH
Confidence 367777887854422 556799999877653 345555443 3446888877788885 599999999999999998
Q ss_pred HHhCCCh
Q psy10292 105 KVLGKSE 111 (168)
Q Consensus 105 ~l~g~s~ 111 (168)
+-+....
T Consensus 94 ekL~~~~ 100 (126)
T 2a4h_A 94 THLAKDG 100 (126)
T ss_dssp HHSCCCC
T ss_pred HHhhhhc
Confidence 8876644
No 4
>4adi_A E1 envelope glycoprotein; viral protein, membrane fusion; HET: NAG NGA; 1.80A {Rubella virus} PDB: 4adg_A* 4adj_A* 4b3v_A*
Probab=61.49 E-value=2.8 Score=35.44 Aligned_cols=16 Identities=50% Similarity=1.340 Sum_probs=14.4
Q ss_pred ceeeeecCCCCCCCcC
Q psy10292 136 KHCICQIPGQITCPGL 151 (168)
Q Consensus 136 ~~c~ce~~gq~pc~~~ 151 (168)
--||||||..|.|-++
T Consensus 47 gaciceiptdvscegl 62 (473)
T 4adi_A 47 GACICEIPTDVSCEGL 62 (473)
T ss_dssp EEEESSCCSCCSTTTT
T ss_pred ceEEEecCCccccccc
Confidence 4699999999999886
No 5
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=59.81 E-value=33 Score=22.26 Aligned_cols=79 Identities=13% Similarity=0.122 Sum_probs=49.7
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-----------CCCCeEEEEeeCCcEE--EEEcCCCCH
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-----------TPTPFITTYLENGSEM--LIDVDNKSK 96 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~--~Idv~nk~~ 96 (168)
.|-..|..|.+...-+..-+..-...++..+++|.|...... ...|.+.++ .+|+.. ..-....+.
T Consensus 27 ~lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~~~g~~~~ 105 (120)
T 1mek_A 27 LLVEFYAPWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFF-RNGDTASPKEYTAGREA 105 (120)
T ss_dssp EEEEEECSSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHHHHTCCSSSEEEEE-ESSCSSSCEECCCCSSH
T ss_pred EEEEEECCCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHHHHCCCCcccEEEEE-eCCCcCCcccccCccCH
Confidence 355667777777666666665555555555678888655322 224666555 688754 333345678
Q ss_pred hHHHHHHHHHhCC
Q psy10292 97 DEIHDHVLKVLGK 109 (168)
Q Consensus 97 ~eIl~~l~~l~g~ 109 (168)
++|.+.|.++++.
T Consensus 106 ~~l~~~l~~~~~~ 118 (120)
T 1mek_A 106 DDIVNWLKKRTGP 118 (120)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHHhccCC
Confidence 8888888877654
No 6
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0
Probab=58.29 E-value=43 Score=23.17 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=28.6
Q ss_pred CCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCChH
Q psy10292 73 PTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQ 112 (168)
Q Consensus 73 ~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~ 112 (168)
..|.+-+.-.+|+....-.-..+.+++.+.|.+++++...
T Consensus 116 ~~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~l~~~~~ 155 (165)
T 3or5_A 116 GIPTSFVIDASGNVSGVIVGPRSKADFDRIVKMALGAKAA 155 (165)
T ss_dssp SSSEEEEECTTSBEEEEECSCCCHHHHHHHHHHHHC----
T ss_pred CCCeEEEECCCCcEEEEEcCCCCHHHHHHHHHHHHhhhcc
Confidence 3566555557898887777778999999999999987543
No 7
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=54.40 E-value=18 Score=25.66 Aligned_cols=34 Identities=12% Similarity=0.287 Sum_probs=27.8
Q ss_pred eEEEEeeCCcEEEEEcC-CCCHhHHHHHHHHHhCC
Q psy10292 76 FITTYLENGSEMLIDVD-NKSKDEIHDHVLKVLGK 109 (168)
Q Consensus 76 ~l~~~~~~G~~~~Idv~-nk~~~eIl~~l~~l~g~ 109 (168)
++++|++||..++|+|. +.++.|+.+.|......
T Consensus 11 vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~ 45 (100)
T 1wgr_A 11 VVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHA 45 (100)
T ss_dssp EEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSC
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCC
Confidence 78999999999999986 57888888887665443
No 8
>2l61_A EC protein I/II; metallothionein, wheat EC-1, Zn binding, metal-thiolate CLUS metal binding protein; NMR {Triticum aestivum} PDB: 2l62_A
Probab=51.74 E-value=6.6 Score=21.39 Aligned_cols=18 Identities=39% Similarity=1.125 Sum_probs=12.5
Q ss_pred CCCCCceeeeecCCCCCCCcCc
Q psy10292 131 GFKCEKHCICQIPGQITCPGLV 152 (168)
Q Consensus 131 G~~~~~~c~ce~~gq~pc~~~~ 152 (168)
|..|...|=|- +|||+-.
T Consensus 1 ~~~cnd~cGCp----vPCpGg~ 18 (26)
T 2l61_A 1 GSGCDDKCGCA----VPCPGGT 18 (26)
T ss_dssp CCCCCGGGSSC----SSCSSST
T ss_pred CccccCCCCCc----ccCCCCc
Confidence 45677778784 6898753
No 9
>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A
Probab=51.35 E-value=37 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.162 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCHhHHHHHHHHHhCC
Q psy10292 82 ENGSEMLIDVDNKSKDEIHDHVLKVLGK 109 (168)
Q Consensus 82 ~~G~~~~Idv~nk~~~eIl~~l~~l~g~ 109 (168)
.+|+.+.+-....+.++|.+.|.+++.+
T Consensus 135 ~~G~i~~~~~g~~~~~~l~~~l~~ll~~ 162 (164)
T 2ggt_A 135 PDGEFLDYFGQNKRKGEIAASIATHMRP 162 (164)
T ss_dssp TTSCEEEEEETTCCHHHHHHHHHHHHGG
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 5788887767778899999999888753
No 10
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=50.27 E-value=55 Score=30.93 Aligned_cols=68 Identities=21% Similarity=0.242 Sum_probs=56.6
Q ss_pred ChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCH---hHHHHHHHHHhCCC
Q psy10292 42 HRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSK---DEIHDHVLKVLGKS 110 (168)
Q Consensus 42 s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~---~eIl~~l~~l~g~s 110 (168)
+--.|+|+..+|-++-..||+|.++++..-- .-|..++=+..+++-+|=-+-+. -.||+++.+-.|-.
T Consensus 185 ~p~t~~~~~~~l~~wl~~~p~~dVVRfTTfF-y~Ftl~f~~~~~ek~vDW~gY~~sVSp~ale~Fe~e~GY~ 255 (759)
T 2zuv_A 185 HPATRKFVFDTFEQWLKDSPQTDVVRFTTFF-YQFTLLFDEKRREKVVDWFGCACTVSPRALDDFEAKYGYR 255 (759)
T ss_dssp SHHHHHHHHHHHHHHHHTCTTCCEEEESCCS-CCCEEEECTTSSEEEEETTCCGGGBCHHHHHHHHHHHSSC
T ss_pred CHHHHHHHHHHHHHHHHhCCCCcEEEEeeee-eeEEEEecccchhhcccccccccccCHHHHHHHHHHhCCC
Confidence 5678999999999999999999999987764 45555666788999999888875 47899998888864
No 11
>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.00 E-value=59 Score=21.98 Aligned_cols=79 Identities=11% Similarity=0.061 Sum_probs=48.7
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
|-..|..|.+...-....+..-...++..++.|.|..... -...|.+.++ .+|+ ...-.-..+.++|
T Consensus 38 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~-~~~~~g~~~~~~l 115 (140)
T 2dj1_A 38 LLEFYAPWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASMLASKFDVSGYPTIKIL-KKGQ-AVDYDGSRTQEEI 115 (140)
T ss_dssp EEEECCTTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHHHHHHTTCCSSSEEEEE-ETTE-EEECCSCCCHHHH
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHHHHHHCCCCccCeEEEE-ECCc-EEEcCCCCCHHHH
Confidence 4455555555554455555555555666667788866532 1224666666 7898 3222334788899
Q ss_pred HHHHHHHhCCCh
Q psy10292 100 HDHVLKVLGKSE 111 (168)
Q Consensus 100 l~~l~~l~g~s~ 111 (168)
.+.|.++++...
T Consensus 116 ~~~l~~~~~~~~ 127 (140)
T 2dj1_A 116 VAKVREVSQPDW 127 (140)
T ss_dssp HHHHHHHHSSSC
T ss_pred HHHHHHhcCCCC
Confidence 999998887654
No 12
>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}
Probab=44.72 E-value=60 Score=20.88 Aligned_cols=73 Identities=11% Similarity=0.018 Sum_probs=43.0
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
.+-..|..|.+...-+ ...|.++....|++.|...... ...|.+.++ .+|+...--....+.++
T Consensus 21 vlv~f~a~wC~~C~~~----~p~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~g~~~~~~ 95 (105)
T 4euy_A 21 VLLFIKTENCGVCDVM----LRKVNYVLENYNYVEKIEILLQDMQEIAGRYAVFTGPTVLLF-YNGKEILRESRFISLEN 95 (105)
T ss_dssp EEEEEEESSCHHHHHH----HHHHHHHHHTCTTEEEEEEEECCC---------CCCCEEEEE-ETTEEEEEEESSCCHHH
T ss_pred EEEEEeCCCCcchHHH----HHHHHHHHHHcCCceEEEEECCCCHHHHHhcCCCCCCEEEEE-eCCeEEEEEeCCcCHHH
Confidence 3444566665433332 2345667777788888544211 123555554 69987755455668888
Q ss_pred HHHHHHHHh
Q psy10292 99 IHDHVLKVL 107 (168)
Q Consensus 99 Il~~l~~l~ 107 (168)
+.+.|.+++
T Consensus 96 l~~~l~~~~ 104 (105)
T 4euy_A 96 LERTIQLFE 104 (105)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHhh
Confidence 888876543
No 13
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=43.10 E-value=29 Score=22.11 Aligned_cols=57 Identities=12% Similarity=0.232 Sum_probs=35.7
Q ss_pred hHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCC
Q psy10292 53 FTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKS 110 (168)
Q Consensus 53 LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s 110 (168)
|.++....+ ++.|..... ....|.+.++ .+|+....-....+.+++.+.|.++++++
T Consensus 40 l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~~~ 108 (109)
T 2yzu_A 40 LEEIAKEYEGKLLVAKLDVDENPKTAMRYRVMSIPTVILF-KDGQPVEVLVGAQPKRNYQAKIEKHLPAT 108 (109)
T ss_dssp HHHHHHHTBTTBEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHHHHHHHHHTTC---
T ss_pred HHHHHHHhhCceEEEEEECCCCHhHHHhCCCCcCCEEEEE-eCCcEeeeEeCCCCHHHHHHHHHHHhhhc
Confidence 455655555 577755431 2235777666 79988765555667889998888777643
No 14
>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...
Probab=41.99 E-value=57 Score=20.81 Aligned_cols=73 Identities=12% Similarity=0.116 Sum_probs=41.3
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+. .+.+.. .|.++....+ ++.|..... -...|.+.++ .+|+....-.-..+.++
T Consensus 24 ~v~f~~~~C~~---C~~~~~-~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 98 (108)
T 2trx_A 24 LVDFWAEWCGP---CKMIAP-ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKGQ 98 (108)
T ss_dssp EEEEECTTCHH---HHHHHH-HHHHHHHHTTTTEEEEEEETTTCTTHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHHH
T ss_pred EEEEECCCCHh---HHHHHH-HHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCcccCEEEEE-eCCEEEEEEecCCCHHH
Confidence 44445555433 333322 2345554443 577755432 1224666555 79988755555668889
Q ss_pred HHHHHHHHhC
Q psy10292 99 IHDHVLKVLG 108 (168)
Q Consensus 99 Il~~l~~l~g 108 (168)
+.+.|.++++
T Consensus 99 l~~~l~~~l~ 108 (108)
T 2trx_A 99 LKEFLDANLA 108 (108)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhhC
Confidence 9888887764
No 15
>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A
Probab=41.59 E-value=55 Score=21.77 Aligned_cols=74 Identities=15% Similarity=0.136 Sum_probs=42.9
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHh-CCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHh
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFK-NPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKD 97 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~-NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~ 97 (168)
.|-..|..|.+ ..+.+.. .|.++... .++|.|..... -...|.+.++ .+|+....-....+.+
T Consensus 34 vlv~f~a~~C~---~C~~~~~-~l~~~~~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~ 108 (119)
T 1w4v_A 34 VVVDFHAQWCG---PCKILGP-RLEKMVAKQHGKVVMAKVDIDDHTDLAIEYEVSAVPTVLAM-KNGDVVDKFVGIKDED 108 (119)
T ss_dssp EEEEEECTTCH---HHHHHHH-HHHHHHHHTTTSSEEEEEETTTTHHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHH
T ss_pred EEEEEECCCCH---HHHHHHH-HHHHHHHHhcCCeEEEEEeCCCCHHHHHHcCCCcccEEEEE-eCCcEEEEEcCCCCHH
Confidence 34455555543 3344332 23444433 35688865421 2234666655 7998775444556889
Q ss_pred HHHHHHHHHhC
Q psy10292 98 EIHDHVLKVLG 108 (168)
Q Consensus 98 eIl~~l~~l~g 108 (168)
+|.+.|.+++|
T Consensus 109 ~l~~~l~~~l~ 119 (119)
T 1w4v_A 109 QLEAFLKKLIG 119 (119)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99998888765
No 16
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=38.79 E-value=11 Score=25.06 Aligned_cols=17 Identities=35% Similarity=0.954 Sum_probs=13.9
Q ss_pred eeeeecCCCCCCCcCccCCC
Q psy10292 137 HCICQIPGQITCPGLVRLPD 156 (168)
Q Consensus 137 ~c~ce~~gq~pc~~~~~~p~ 156 (168)
.|||.|+. |+.+.||=.
T Consensus 33 ncicdien---csnmaplys 49 (80)
T 2lq4_p 33 NCICDIEN---CSNMAPLYS 49 (80)
T ss_dssp CSSCCCCC---CCSSCCCCC
T ss_pred hhhccccc---ccccccccc
Confidence 69999985 999988743
No 17
>2npb_A Selenoprotein W; structure, thioredoxin-like fold, oxidoreductase; NMR {Mus musculus}
Probab=37.77 E-value=49 Score=22.97 Aligned_cols=75 Identities=7% Similarity=0.006 Sum_probs=41.0
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHhCCC-CeEEEEeCCCCCCeEEEEeeCCcEE---EEEcCCCCHhHHHHHHHH
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFKNPN-VQLQVFKNMTPTPFITTYLENGSEM---LIDVDNKSKDEIHDHVLK 105 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~-V~i~~~k~~~~~P~l~~~~~~G~~~---~Idv~nk~~~eIl~~l~~ 105 (168)
+|+|.||..-+-..=+. |.--.|...-|+ +.|.+....+..-...++. ||+.+ ..+-.-=+.+|+++.+.+
T Consensus 4 ~V~I~YC~~C~y~~ra~----~laqeLl~~Fp~~l~V~~~l~p~~~G~FEV~v-ng~lV~SKk~~ggFP~~~el~q~I~~ 78 (96)
T 2npb_A 4 AVRVVYSGACGYKPKYL----QLKEKLEHEFPGCLDICGEGTPQVTGFFEVTV-AGKLVHSKKRGDGYVDTESKFRKLVT 78 (96)
T ss_dssp EEEEECCCCSCHHHHHH----HHHHHHHHHSBTTEEEEECCCSSCCSCCEEEE-TTEEEEETTTTCCSSCSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHH----HHHHHHHHhCCcceEEEEEEcCCCCcEEEEEE-CCEEEEEEecCCCCCChHHHHHHHHH
Confidence 59999998765322222 222333344465 6665544443334556666 66543 223333456788888887
Q ss_pred HhCC
Q psy10292 106 VLGK 109 (168)
Q Consensus 106 l~g~ 109 (168)
.+..
T Consensus 79 ~i~~ 82 (96)
T 2npb_A 79 AIKA 82 (96)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 6643
No 18
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=36.22 E-value=33 Score=26.03 Aligned_cols=38 Identities=16% Similarity=0.130 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCCCHhHHHHHHHHHhCCChHHHHHHHHH
Q psy10292 83 NGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120 (168)
Q Consensus 83 ~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~l~~e~~~ 120 (168)
.|-...|.+++.+.++|++.+..-++-+.++-..+++.
T Consensus 111 FGfpFvi~v~g~~~~~Il~~l~~Rl~nd~~~E~~~a~~ 148 (165)
T 2o8i_A 111 FGFPFIIAVKGLNRHDILSAFDTRIDNNAAQEFATATG 148 (165)
T ss_dssp HSSCCCCCCTTCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCeeEeeeCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 47778899999999999999999999887765555444
No 19
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}
Probab=35.84 E-value=1e+02 Score=21.02 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=56.6
Q ss_pred HHHHhccCcccc-CCceEEEEEecCC---CCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-------------CCCCe
Q psy10292 14 LKYLNAGRIVFK-DKIKIFAINYNFN---AENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-------------TPTPF 76 (168)
Q Consensus 14 l~yL~~g~~~l~-~~Vk~l~l~y~~~---~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-------------~~~P~ 76 (168)
+..|++-.-.++ ++|..+.|+.... ..+..-+++|+..+ +-..++....+. ...|.
T Consensus 48 ~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~v~~~P~ 120 (158)
T 3eyt_A 48 IPLAQKVRAAFPEDKVAVLGLHTVFEHHEAMTPISLKAFLHEY-------RIKFPVGVDQPGDGAMPRTMAAYQMRGTPS 120 (158)
T ss_dssp HHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHT-------TCCSCEEEECCCSSSSCHHHHHTTCCSSSE
T ss_pred hHHHHHHHHHhCcCCEEEEEEEecccccccCCHHHHHHHHHHc-------CCCceEEEcCccchhhHHHHHHcCCCCCCE
Confidence 666666666666 4688888887522 12355567777543 333444333222 12355
Q ss_pred EEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCC
Q psy10292 77 ITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKS 110 (168)
Q Consensus 77 l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s 110 (168)
.-+.-.+|+.+..-.-..+.+++.+.|.+++...
T Consensus 121 ~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~ 154 (158)
T 3eyt_A 121 LLLIDKAGDLRAHHFGDVSELLLGAEIATLLGEA 154 (158)
T ss_dssp EEEECTTSEEEEEEESCCCHHHHHHHHHHHHTSC
T ss_pred EEEECCCCCEEEEEeCCCCHHHHHHHHHHHhccC
Confidence 4444468988877777789999999999988754
No 20
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=35.64 E-value=32 Score=26.70 Aligned_cols=38 Identities=13% Similarity=0.051 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCCCHhHHHHHHHHHhCCChHHHHHHHHH
Q psy10292 83 NGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120 (168)
Q Consensus 83 ~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~l~~e~~~ 120 (168)
.|-...|.+++.+.++|++.|..-++.+.++-..+++.
T Consensus 127 FGfpFVi~v~G~s~~~IL~~l~~RL~N~~~~E~~~Al~ 164 (181)
T 2q37_A 127 FGFIFIICASGRTHAEMLHALKERYENRPIVELEIAAM 164 (181)
T ss_dssp HSSCCCCCCSSCCHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 37777899999999999999999999998765555443
No 21
>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=35.45 E-value=75 Score=21.65 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=42.4
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHh
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKD 97 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~ 97 (168)
.|-..|..|.+. .+.+.. .|.+++...+ +|.|..... -...|.+.++ .+|+....-.-..+.+
T Consensus 43 vlv~F~a~wC~~---C~~~~p-~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~ 117 (128)
T 2o8v_B 43 ILVDFWAEWCGP---AKMIAP-ILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF-KNGEVAATKVGALSKG 117 (128)
T ss_dssp EEEEEECSSCHH---HHHTHH-HHHHHHHHTTTTEEEEEEETTTCCTTSGGGTCCSSSEEEEE-ETTEEEEEEESCCCHH
T ss_pred EEEEEECCCCHH---HHHHhH-HHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCccCEEEEE-eCCEEEEEEcCCCCHH
Confidence 344455555433 333322 2345555544 577755431 1224666665 8998875545556888
Q ss_pred HHHHHHHHHhC
Q psy10292 98 EIHDHVLKVLG 108 (168)
Q Consensus 98 eIl~~l~~l~g 108 (168)
+|.+.|.++++
T Consensus 118 ~l~~~l~~~l~ 128 (128)
T 2o8v_B 118 QLKEFLDANLA 128 (128)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhhC
Confidence 99998887764
No 22
>1ixt_A Spasmodic protein TX9A-like protein; conotoxin, P-superfamily, ICK, inhibitory cystine knot, conus gloriamaris, GM9A, GM9.1; NMR {Synthetic} SCOP: g.3.6.1
Probab=35.42 E-value=20 Score=19.41 Aligned_cols=14 Identities=43% Similarity=1.132 Sum_probs=10.9
Q ss_pred CCCCCceeeeecCC
Q psy10292 131 GFKCEKHCICQIPG 144 (168)
Q Consensus 131 G~~~~~~c~ce~~g 144 (168)
-..|..+|||-..|
T Consensus 9 hs~c~shcic~~~~ 22 (27)
T 1ixt_A 9 HSDCASHCICTFRG 22 (27)
T ss_dssp SSCSSSSEEEETTE
T ss_pred hhhHhhceeeeecc
Confidence 34699999998765
No 23
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}
Probab=34.52 E-value=49 Score=23.08 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHhccCccccC----CceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC---------------
Q psy10292 10 IRRTLKYLNAGRIVFKD----KIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN--------------- 70 (168)
Q Consensus 10 i~rtl~yL~~g~~~l~~----~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~--------------- 70 (168)
=++.+..|++-.-.+++ +|..+.|+.........-+++|+..+ ++..+++.-..
T Consensus 51 C~~~~~~l~~~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~-------~~~~~~l~d~~~~~~~~~~~~gv~~~ 123 (172)
T 2k6v_A 51 CPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAF-------HPSFLGLSGSPEAVREAAQTFGVFYQ 123 (172)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTTEEEEEEESCTTTCCHHHHHHHHHHH-------CTTEEEECCCHHHHHHHHHHHTCCEE
T ss_pred hHHHHHHHHHHHHHhhhhccCCEEEEEEEECCCCCCHHHHHHHHHHh-------CCCcEEEeCCHHHHHHHHHhcCeEEE
Confidence 35566666666666663 68888888765333456678887652 22222221100
Q ss_pred -----------CCCCCeEEEEeeCCcEEEEEcCCC--CHhHHHHHHHHH
Q psy10292 71 -----------MTPTPFITTYLENGSEMLIDVDNK--SKDEIHDHVLKV 106 (168)
Q Consensus 71 -----------~~~~P~l~~~~~~G~~~~Idv~nk--~~~eIl~~l~~l 106 (168)
....|.+-+.- +|+.+..-.-.. +.++|.+.|.++
T Consensus 124 ~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~~~~~~~~l~~~l~~l 171 (172)
T 2k6v_A 124 KSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPDKAEATDRVVADLQAL 171 (172)
T ss_dssp EEEEEETTEEEEEECCCEEEEE-TTEEEEEECHHHHTCHHHHHHHHHHC
T ss_pred eccCCCCCCceEecCCEEEEEE-CCEEEEEECCCCCCCHHHHHHHHHHh
Confidence 01134444433 888776655445 788888888764
No 24
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=33.90 E-value=78 Score=19.96 Aligned_cols=72 Identities=13% Similarity=0.057 Sum_probs=43.6
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+...-... .|.++....+ .+.|..... -...|.+.++ .+|+....-....+.++
T Consensus 25 lv~f~~~~C~~C~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~-~~g~~~~~~~g~~~~~~ 99 (109)
T 3tco_A 25 LVDCWAEWCAPCHLYEP----IYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLNIPTTLIF-VNGQLVDSLVGAVDEDT 99 (109)
T ss_dssp EEEEECTTCHHHHHHHH----HHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHHH
T ss_pred EEEEECCCCHHHHhhhH----HHHHHHHHhCCCceEEEEccccCHHHHHhcCcccCCEEEEE-cCCcEEEeeeccCCHHH
Confidence 44455555444443333 3444555555 677755432 2234677666 89988766566678899
Q ss_pred HHHHHHHHh
Q psy10292 99 IHDHVLKVL 107 (168)
Q Consensus 99 Il~~l~~l~ 107 (168)
+.+.|.+++
T Consensus 100 l~~~l~~~l 108 (109)
T 3tco_A 100 LESTVNKYL 108 (109)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 998888765
No 25
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}
Probab=33.79 E-value=77 Score=22.54 Aligned_cols=76 Identities=13% Similarity=0.178 Sum_probs=43.5
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHh-CCCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHh
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFK-NPNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKD 97 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~-NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~ 97 (168)
.|-..|..|.+ .-+.|.. .|.+++.. ..+|.|...... ..-|.+.++ .+|+....-.-..+.+
T Consensus 67 vlv~F~a~wC~---~C~~~~p-~l~~la~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~-~~G~~~~~~~G~~~~~ 141 (155)
T 2ppt_A 67 LLVDFWAPWCG---PCRQMAP-QFQAAAATLAGQVRLAKIDTQAHPAVAGRHRIQGIPAFILF-HKGRELARAAGARPAS 141 (155)
T ss_dssp EEEEEECTTCH---HHHHHHH-HHHHHHHHHTTTCEEEEEETTTSTHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHH
T ss_pred EEEEEECCCCH---HHHHHHH-HHHHHHHHccCCEEEEEEeCCccHHHHHHcCCCcCCEEEEE-eCCeEEEEecCCCCHH
Confidence 34445555543 3344332 23444444 346888655321 224666555 7998875444557889
Q ss_pred HHHHHHHHHhCCC
Q psy10292 98 EIHDHVLKVLGKS 110 (168)
Q Consensus 98 eIl~~l~~l~g~s 110 (168)
+|.+.|.+++++.
T Consensus 142 ~l~~~l~~~l~~~ 154 (155)
T 2ppt_A 142 ELVGFVRGKLGAR 154 (155)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHhccC
Confidence 9999999888753
No 26
>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1
Probab=32.66 E-value=98 Score=19.76 Aligned_cols=72 Identities=10% Similarity=0.083 Sum_probs=42.6
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
+-..|..|.+.. +.+. ..|.++....|++.|..... -...|.+.++ .+|+... ...|.+.++|
T Consensus 25 ~v~f~a~wC~~C---~~~~-~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~-~~~G~~~~~l 98 (107)
T 1gh2_A 25 VVKFTMRGCGPC---LRIA-PAFSSMSNKYPQAVFLEVDVHQCQGTAATNNISATPTFQFF-RNKVRID-QYQGADAVGL 98 (107)
T ss_dssp EEEEECSSCHHH---HHHH-HHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCSSSEEEEE-ETTEEEE-EEESSCHHHH
T ss_pred EEEEECCCChhh---HHHH-HHHHHHHHHCCCcEEEEEECccCHHHHHhcCCCcccEEEEE-ECCeEEE-EEeCCCHHHH
Confidence 444555554433 3332 23455666678899866531 1234666555 7887653 3446777888
Q ss_pred HHHHHHHhC
Q psy10292 100 HDHVLKVLG 108 (168)
Q Consensus 100 l~~l~~l~g 108 (168)
.+.|.+++|
T Consensus 99 ~~~l~~~lg 107 (107)
T 1gh2_A 99 EEKIKQHLE 107 (107)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHhcC
Confidence 888887765
No 27
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=32.03 E-value=44 Score=21.78 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=23.5
Q ss_pred HHhCCCCeEEEE---------eCCCCCCeEEEEeeC-CcEEEEEcCCC
Q psy10292 57 QFKNPNVQLQVF---------KNMTPTPFITTYLEN-GSEMLIDVDNK 94 (168)
Q Consensus 57 ky~NP~V~i~~~---------k~~~~~P~l~~~~~~-G~~~~Idv~nk 94 (168)
+.++|=|++..- +..+..-++++.|+| |.+..+|+...
T Consensus 7 klKK~iv~V~~dgR~arlllnrRps~~G~~wiKyED~G~e~E~d~~~v 54 (62)
T 1igq_A 7 KLKKAIVQVEHDERPARLILNRRPPAEGYAWLKYEDDGQEFEANLADV 54 (62)
T ss_dssp --CCCEEEEEETTEEEEECTTBCCSSTTEEEEEETTTCCEEEEEGGGC
T ss_pred hhhCcEEEEEECChhhhhhhccCCCcCceEEEEEecCCcEEEEeccce
Confidence 456666666321 222234499999987 99999987653
No 28
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=31.88 E-value=31 Score=26.43 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCHhHHHHHHHHHhCCChHHHHHHHHH
Q psy10292 83 NGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120 (168)
Q Consensus 83 ~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~l~~e~~~ 120 (168)
.|-...|.+++.+.++|++.+..-++-+.++-..+++.
T Consensus 115 FGfpFvi~v~g~s~~~IL~~l~~Rl~n~~~~E~~~a~~ 152 (174)
T 2o70_A 115 FGFPFVICARLNNKADIVRQLSERLKNRRTAELECAIE 152 (174)
T ss_dssp HSSCCCCCGGGCCHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCeEEEeeCCCCHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 37777899999999999999999999887765555443
No 29
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=31.41 E-value=52 Score=26.71 Aligned_cols=30 Identities=7% Similarity=0.306 Sum_probs=26.5
Q ss_pred eEEEEeeCCcEEEEEcC-CCCHhHHHHHHHH
Q psy10292 76 FITTYLENGSEMLIDVD-NKSKDEIHDHVLK 105 (168)
Q Consensus 76 ~l~~~~~~G~~~~Idv~-nk~~~eIl~~l~~ 105 (168)
++++|.+||..++|.|. .+++.|+++.|..
T Consensus 10 ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~ 40 (256)
T 3hk0_A 10 DVKVFSEDGTSKVVEILADMTARDLCQLLVY 40 (256)
T ss_dssp EEEEEETTSCEEEEEECTTCBHHHHHHHHHC
T ss_pred EEEEEecCCcEEEEEECCCCCHHHHHHHHHH
Confidence 78999999999999998 8999999987754
No 30
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=30.53 E-value=50 Score=27.23 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=28.9
Q ss_pred eEEEEeeCCcEEEEEcC-CCCHhHHHHHHHHHhCC
Q psy10292 76 FITTYLENGSEMLIDVD-NKSKDEIHDHVLKVLGK 109 (168)
Q Consensus 76 ~l~~~~~~G~~~~Idv~-nk~~~eIl~~l~~l~g~ 109 (168)
++++|.+||..++|+|. ..++.|+++.|....+.
T Consensus 33 ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~ 67 (281)
T 4gmv_A 33 VIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHC 67 (281)
T ss_dssp EEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCC
T ss_pred EEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCC
Confidence 67899999999999997 89999999988665544
No 31
>4e6f_A Uncharacterized protein; PF14730 family protein, DUF4468 with TBP-like fold,structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.49A {Bacteroides ovatus}
Probab=29.83 E-value=54 Score=25.69 Aligned_cols=27 Identities=19% Similarity=0.277 Sum_probs=22.6
Q ss_pred eCCcEE---EEEcCCCCHhHHHHHHHHHhC
Q psy10292 82 ENGSEM---LIDVDNKSKDEIHDHVLKVLG 108 (168)
Q Consensus 82 ~~G~~~---~Idv~nk~~~eIl~~l~~l~g 108 (168)
.||+++ +|++.|++.+||.+.+.+.+.
T Consensus 21 vdGKVvFt~~i~vPg~S~~qIYd~~~~wl~ 50 (181)
T 4e6f_A 21 VDGKVVFSKEFQIPGMSQAQIYDTMTKWMD 50 (181)
T ss_dssp ETTEEEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 488875 999999999999999876543
No 32
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=29.55 E-value=1.1e+02 Score=19.35 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=40.2
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
|-..|..|.+...-...-+..-...++..++.+.|...... ..-|.+.++ .+|+....-.-..+.++|
T Consensus 25 lv~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l 103 (111)
T 3uvt_A 25 FIKFYAPWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRGYPTLLLF-RGGKKVSEHSGGRDLDSL 103 (111)
T ss_dssp EEEEECSSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEECSCCSHHHH
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCcccEEEEE-eCCcEEEeccCCcCHHHH
Confidence 44455555544433333333222222333467888655321 234665555 788876555556788888
Q ss_pred HHHHHH
Q psy10292 100 HDHVLK 105 (168)
Q Consensus 100 l~~l~~ 105 (168)
.+.|.+
T Consensus 104 ~~~l~~ 109 (111)
T 3uvt_A 104 HRFVLS 109 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 888765
No 33
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=28.95 E-value=96 Score=21.32 Aligned_cols=75 Identities=13% Similarity=0.124 Sum_probs=44.7
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHh-CCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFK-NPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~-NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+...-... .|.++... ++++.|..... -...|.+.++ .+|+....-.-..+.++
T Consensus 59 lv~F~a~wC~~C~~~~p----~l~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 133 (148)
T 3p2a_A 59 VIDFWAPWCGPCRSFAP----IFAETAAERAGKVRFVKVNTEAEPALSTRFRIRSIPTIMLY-RNGKMIDMLNGAVPKAP 133 (148)
T ss_dssp EEEEECSSCHHHHHHHH----HHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEESSCCCHHH
T ss_pred EEEEECCCCHHHHHHHH----HHHHHHHHcCCceEEEEEECcCCHHHHHHCCCCccCEEEEE-ECCeEEEEEeCCCCHHH
Confidence 44455555543333332 33344333 36788865532 2224665554 79988765556688999
Q ss_pred HHHHHHHHhCCC
Q psy10292 99 IHDHVLKVLGKS 110 (168)
Q Consensus 99 Il~~l~~l~g~s 110 (168)
|.+.|.+++++.
T Consensus 134 l~~~l~~~l~~~ 145 (148)
T 3p2a_A 134 FDNWLDEQLSRD 145 (148)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHhccc
Confidence 999999888764
No 34
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=28.33 E-value=1.1e+02 Score=19.37 Aligned_cols=72 Identities=13% Similarity=0.093 Sum_probs=40.2
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
+-..|..|.+. .+.+.. .|.++....+ .+.+..... -...|.+.++ .+|+....-....+.++
T Consensus 23 lv~f~~~~C~~---C~~~~~-~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 97 (107)
T 1dby_A 23 LVDFWAPWCGP---CRIIAP-VVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRSIPTIMVF-KGGKKCETIIGAVPKAT 97 (107)
T ss_dssp EEEEECTTCHH---HHHHHH-HHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCSSCEEEEE-SSSSEEEEEESCCCHHH
T ss_pred EEEEECCCCHh---HHHHHH-HHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCcCCEEEEE-eCCEEEEEEeCCCCHHH
Confidence 44445544433 333322 2344544443 577765432 1234665544 78988765556677888
Q ss_pred HHHHHHHHh
Q psy10292 99 IHDHVLKVL 107 (168)
Q Consensus 99 Il~~l~~l~ 107 (168)
+.+.|.+++
T Consensus 98 l~~~l~~~l 106 (107)
T 1dby_A 98 IVQTVEKYL 106 (107)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 888887765
No 35
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=28.03 E-value=52 Score=25.64 Aligned_cols=38 Identities=29% Similarity=0.338 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCCCHhHHHHHHHHHhCCChHHHHHHHHH
Q psy10292 83 NGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120 (168)
Q Consensus 83 ~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~l~~e~~~ 120 (168)
.|-...|.+++.+.++|++.+..-++-+.++-..+++.
T Consensus 136 FGfpFVi~v~G~s~~~IL~~l~~Rl~nd~e~E~~~Al~ 173 (189)
T 3o7i_A 136 FGRVFLIRAKGRSGEEILQALTRRLQHTADEEVAEALA 173 (189)
T ss_dssp HSSCCCCCCTTCCHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCceEEecCCCCHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 37777899999999999999999999887765555444
No 36
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=27.87 E-value=1.3e+02 Score=20.32 Aligned_cols=75 Identities=5% Similarity=0.070 Sum_probs=44.1
Q ss_pred EEEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHh
Q psy10292 30 IFAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKD 97 (168)
Q Consensus 30 ~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~ 97 (168)
.|-..|..|.+ ..+.+. ..|.+++...+ +|.|..... ....|.+.++ .+|+....-.-..+.+
T Consensus 53 vvv~f~~~~C~---~C~~~~-~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~ 127 (140)
T 1v98_A 53 TLVDFFAPWCG---PCRLVS-PILEELARDHAGRLKVVKVNVDEHPGLAARYGVRSVPTLVLF-RRGAPVATWVGASPRR 127 (140)
T ss_dssp EEEEEECTTCH---HHHHHH-HHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHH
T ss_pred EEEEEECCCCH---HHHHHH-HHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCccCEEEEE-eCCcEEEEEeCCCCHH
Confidence 44444544433 334443 23456666665 677755431 2234666555 7998875444556788
Q ss_pred HHHHHHHHHhCC
Q psy10292 98 EIHDHVLKVLGK 109 (168)
Q Consensus 98 eIl~~l~~l~g~ 109 (168)
+|.+.|.++++.
T Consensus 128 ~l~~~i~~~l~~ 139 (140)
T 1v98_A 128 VLEERLRPYLEG 139 (140)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHcc
Confidence 899988887754
No 37
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=26.77 E-value=1.1e+02 Score=18.38 Aligned_cols=20 Identities=10% Similarity=0.104 Sum_probs=16.8
Q ss_pred CCCHhHHHHHHHHHhCCChH
Q psy10292 93 NKSKDEIHDHVLKVLGKSEQ 112 (168)
Q Consensus 93 nk~~~eIl~~l~~l~g~s~~ 112 (168)
+.+.+|++.++..++|.+..
T Consensus 2 ~~d~de~ia~F~~iTG~~d~ 21 (45)
T 3e21_A 2 SMDREMILADFQACTGIENI 21 (45)
T ss_dssp -CCHHHHHHHHHHHHCCCCH
T ss_pred cccHHHHHHHHHHHHCCCCH
Confidence 46789999999999998863
No 38
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=26.14 E-value=90 Score=20.30 Aligned_cols=75 Identities=12% Similarity=0.087 Sum_probs=43.7
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhC-CCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKN-PNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~N-P~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+...-....+. +++... .++.|...... ...|.+.++ .+|+....-.-..+.++
T Consensus 21 lv~f~a~wC~~C~~~~~~l~----~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 95 (112)
T 2voc_A 21 LADFWAPWCGPSKMIAPVLE----ELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVL-KDGEVVETSVGFKPKEA 95 (112)
T ss_dssp EEEEECTTBGGGGGHHHHHH----HHHHHHTTTCEEEEEETTTCCSHHHHTTCCSBSEEEEE-ETTEEEEEEESCCCHHH
T ss_pred EEEEECCCCHHHHHHHHHHH----HHHHHhCCCcEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCEEEEEEeCCCCHHH
Confidence 44556666555444444333 333222 36888655321 123666666 89988755555677888
Q ss_pred HHHHHHHHhCCC
Q psy10292 99 IHDHVLKVLGKS 110 (168)
Q Consensus 99 Il~~l~~l~g~s 110 (168)
+.+.|.+.++.+
T Consensus 96 l~~~l~~~~~~~ 107 (112)
T 2voc_A 96 LQELVNKHLLEH 107 (112)
T ss_dssp HHHHHHTTSCSC
T ss_pred HHHHHHHHHHhh
Confidence 888887776654
No 39
>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}
Probab=25.37 E-value=1.7e+02 Score=20.17 Aligned_cols=91 Identities=12% Similarity=0.020 Sum_probs=51.3
Q ss_pred HHHHHHHhccCcccc-----CCceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEE-----------------
Q psy10292 11 RRTLKYLNAGRIVFK-----DKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVF----------------- 68 (168)
Q Consensus 11 ~rtl~yL~~g~~~l~-----~~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~----------------- 68 (168)
+..+..|++-.-.+. ++|+.|.|+......+..-+++|+..+ ++...++.-
T Consensus 43 ~~~~~~l~~l~~~~~~~~~~~~v~vv~is~d~~~d~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~v~~~ 115 (171)
T 2rli_A 43 PDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQDF-------HPRLLGLTGSTKQVAQASHSYRVYYN 115 (171)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCEEEEEEESCSTTCCHHHHHHHHHTT-------CTTCCEEECCHHHHHHHHHHSCCCCE
T ss_pred HHHHHHHHHHHHHHhhccCCCceEEEEEEECCCCCCHHHHHHHHHHc-------CCCeEEEeCCHHHHHHHHHHhCeEEE
Confidence 444445554444443 478888888764333455678887654 222222210
Q ss_pred eCCC---------CCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhC
Q psy10292 69 KNMT---------PTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLG 108 (168)
Q Consensus 69 k~~~---------~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g 108 (168)
.... ..|..-+.-.+|+.+..-.-..+.++|.+.|.+++.
T Consensus 116 p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~l~~~l~~ll~ 164 (171)
T 2rli_A 116 AGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMA 164 (171)
T ss_dssp ECCCCSSCCCCEECCCEEEEECTTSCEEEEEESSCCHHHHHHHHHHHHH
T ss_pred ecCCCCCCCeEEeccceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 0000 011233333578888766667889999999988764
No 40
>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1
Probab=24.57 E-value=70 Score=21.68 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=22.6
Q ss_pred CCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHh
Q psy10292 74 TPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVL 107 (168)
Q Consensus 74 ~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~ 107 (168)
-|.+.++ .+|+....-.-..+.+++.+.|.+++
T Consensus 90 ~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~l~~~l 122 (123)
T 1oaz_A 90 IPTLLLF-KNGEVAATKVGALSKGQLKEFLDANL 122 (123)
T ss_dssp SSEEEEE-ESSSEEEEEESCCCHHHHHHHHTTTC
T ss_pred cCEEEEE-ECCEEEEEEeCCCCHHHHHHHHHHHh
Confidence 3666655 89998754444567888888876654
No 41
>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A
Probab=24.31 E-value=2.1e+02 Score=20.93 Aligned_cols=78 Identities=12% Similarity=0.086 Sum_probs=52.2
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
+-..|..|.+...-...-+..-...++..+|+|.|...... ..-|.+.+ |.+|+.... .-..+.++|
T Consensus 151 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~-~~~g~~~~~-~g~~~~~~l 228 (241)
T 3idv_A 151 LVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKI-FRKGRPYDY-NGPREKYGI 228 (241)
T ss_dssp EEEEECTTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHHHHHHTTCCSSSEEEE-EETTEEEEC-CSCCSHHHH
T ss_pred EEEEECCCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHHHHHHcCCcccCEEEE-EECCeEEEe-cCCCCHHHH
Confidence 44556777766666666666666677777899999765422 22465555 457876552 334789999
Q ss_pred HHHHHHHhCCC
Q psy10292 100 HDHVLKVLGKS 110 (168)
Q Consensus 100 l~~l~~l~g~s 110 (168)
.+.|.+.++.+
T Consensus 229 ~~~l~~~~~~~ 239 (241)
T 3idv_A 229 VDYMIEQSGAA 239 (241)
T ss_dssp HHHHHHHTTCT
T ss_pred HHHHHhhhCCC
Confidence 99999888764
No 42
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=24.23 E-value=1.5e+02 Score=19.55 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=27.6
Q ss_pred CCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCChH
Q psy10292 74 TPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQ 112 (168)
Q Consensus 74 ~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~ 112 (168)
.|.+.++-.+|+....-.-..+.++|.+.|.++++..+.
T Consensus 87 ~Pt~~~~d~~G~~~~~~~G~~~~~~l~~~l~~~~~~~~~ 125 (130)
T 2kuc_A 87 YPTLLFINSSGEVVYRLVGAEDAPELLKKVKLGVESEGH 125 (130)
T ss_dssp SCEEEEECTTSCEEEEEESCCCHHHHHHHHHHHHSCCC-
T ss_pred CCEEEEECCCCcEEEEecCCCCHHHHHHHHHHHHHhccc
Confidence 455554435888876555567889999999998887654
No 43
>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A
Probab=23.95 E-value=82 Score=22.43 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=32.6
Q ss_pred hHHHHHhCCCCe--EEEEe-----------CCCCCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCChHH
Q psy10292 53 FTQIQFKNPNVQ--LQVFK-----------NMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQV 113 (168)
Q Consensus 53 LP~Lky~NP~V~--i~~~k-----------~~~~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~ 113 (168)
|.+|....++|. |.... +-..-|.+.++ .+|++...-.-..+.++|.+.|.++++.+...
T Consensus 58 l~~la~~~~~v~~~~~~Vd~d~~~~la~~~~V~~iPT~~~f-k~G~~v~~~~G~~~~~~l~~~i~~~l~~~~~~ 130 (142)
T 2es7_A 58 IAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVF-TDGKLRGALSGIHPWAELLTLMRSIVDTPAAQ 130 (142)
T ss_dssp HHHHHHTCTTSCCEEEEECHHHHHHHHHTTTCCSSSEEEEE-SCC----CEESCCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHhcccceeEEEEECCCCHHHHHhcCCCcCCeEEEE-eCCEEEEEEeCCCCHHHHHHHHHHHhcccccC
Confidence 344444446777 75431 22235777666 89987643334567889999999998876553
No 44
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=23.90 E-value=1e+02 Score=21.08 Aligned_cols=76 Identities=13% Similarity=0.104 Sum_probs=45.0
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCC-CeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPN-VQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~-V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+.. +.+. ..|.+++...++ |.|...... ...|.+.++ .+|+....-.-..+.++
T Consensus 28 lv~F~a~wC~~C---~~~~-~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 102 (140)
T 3hz4_A 28 VVMFYSPACPYC---KAME-PYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFF-CHGRPVWEQVGQIYPSI 102 (140)
T ss_dssp EEEEECTTCHHH---HHHH-HHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEE-ETTEEEEEEESSCCHHH
T ss_pred EEEEECCCChhH---HHHH-HHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEE-eCCcEEEEEcCCCCHHH
Confidence 444555554333 3332 234556555554 888655322 223555544 78988755455678899
Q ss_pred HHHHHHHHhCCCh
Q psy10292 99 IHDHVLKVLGKSE 111 (168)
Q Consensus 99 Il~~l~~l~g~s~ 111 (168)
|.+.|.+++.+..
T Consensus 103 l~~~l~~~l~~~~ 115 (140)
T 3hz4_A 103 LKNAVRDMLQHGE 115 (140)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccc
Confidence 9999998876543
No 45
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=23.03 E-value=1.3e+02 Score=18.89 Aligned_cols=71 Identities=11% Similarity=0.040 Sum_probs=38.5
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+ ..+.+.. .|.++....+ ++.|..... -...|.+.++ .+|+....-....+.++
T Consensus 24 lv~f~~~~C~---~C~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~ 98 (107)
T 2i4a_A 24 LVDFWAEWCG---PCKMIGP-ALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRSIPTLMLV-RDGKVIDKKVGALPKSQ 98 (107)
T ss_dssp EEEEECTTCH---HHHHHHH-HHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCSSSEEEEE-ETTEEEEEEESCCCHHH
T ss_pred EEEEECCCCh---hHHHHhH-HHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCccCEEEEE-eCCEEEEEecCCCCHHH
Confidence 3444444433 3344432 2344544433 677755432 1234666666 79988754444567788
Q ss_pred HHHHHHHH
Q psy10292 99 IHDHVLKV 106 (168)
Q Consensus 99 Il~~l~~l 106 (168)
+.+.|.++
T Consensus 99 l~~~l~~~ 106 (107)
T 2i4a_A 99 LKAWVESA 106 (107)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 88777653
No 46
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}
Probab=22.77 E-value=1.1e+02 Score=20.80 Aligned_cols=39 Identities=13% Similarity=0.170 Sum_probs=28.5
Q ss_pred CCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCChH
Q psy10292 74 TPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQ 112 (168)
Q Consensus 74 ~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~ 112 (168)
.|.+-+.-.+|+....-....+.+++.+.|.++.+.++.
T Consensus 110 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~~~~~~~~ 148 (154)
T 3ia1_A 110 QPWTFVVDREGKVVALFAGRAGREALLDALLLAGADLEG 148 (154)
T ss_dssp SCEEEEECTTSEEEEEEESBCCHHHHHHHHHHTTCCC--
T ss_pred ccEEEEECCCCCEEEEEcCCCCHHHHHHHHHhccCcccc
Confidence 355445556898887777778999999999998877653
No 47
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=22.69 E-value=93 Score=18.73 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=15.9
Q ss_pred HHHHHhCCCCeEEEEeCCCC
Q psy10292 54 TQIQFKNPNVQLQVFKNMTP 73 (168)
Q Consensus 54 P~Lky~NP~V~i~~~k~~~~ 73 (168)
..|...||+|.+.+....++
T Consensus 23 ~~I~~e~P~v~v~vl~~gs~ 42 (45)
T 1hym_A 23 AIIERQNPNVKAVILEEGTP 42 (45)
T ss_dssp HHHHHHCTTCEEEEEECCSC
T ss_pred HHHHHHCCCCeEEEecCCCc
Confidence 46889999999988776553
No 48
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}
Probab=22.65 E-value=1.8e+02 Score=19.64 Aligned_cols=96 Identities=9% Similarity=0.039 Sum_probs=58.3
Q ss_pred hHHH-HHHHHhccCccccC-CceEEEEEecCCC---CCChhHHHHHHhchHHHHHhCCCCeEEEEeCCC-----------
Q psy10292 9 PIRR-TLKYLNAGRIVFKD-KIKIFAINYNFNA---ENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMT----------- 72 (168)
Q Consensus 9 pi~r-tl~yL~~g~~~l~~-~Vk~l~l~y~~~~---~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~----------- 72 (168)
|-++ ++..|++-.-.+++ +|..+.|+....+ .+..-+++|+..+ +-..++.......
T Consensus 44 ~C~~e~~~~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~ 116 (160)
T 3lor_A 44 GCVNHGVPQAQKIHRMIDESQVQVIGLHSVFEHHDVMTPEALKVFIDEF-------GIKFPVAVDMPREGQRIPSTMKKY 116 (160)
T ss_dssp HHHHTHHHHHHHHHHHSCTTTEEEEEEECCCSCGGGSCHHHHHHHHHHT-------TCCSCEEEECCCTTCSSCHHHHHT
T ss_pred chhhhhhHHHHHHHHHhCcCCcEEEEEeccccccccCCHHHHHHHHHHc-------CCCCcEEECCccccchhhhHHHhc
Confidence 3455 46677766666765 4888888875211 2345567776542 2234443332221
Q ss_pred ---CCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCCh
Q psy10292 73 ---PTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSE 111 (168)
Q Consensus 73 ---~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~ 111 (168)
..|..-+.-.+|+.+..-.-..+.+++.+.|.+++....
T Consensus 117 ~v~~~P~~~lid~~G~i~~~~~g~~~~~~l~~~i~~ll~~~~ 158 (160)
T 3lor_A 117 RLEGTPSIILADRKGRIRQVQFGQVDDFVLGLLLGSLLSETD 158 (160)
T ss_dssp TCCSSSEEEEECTTSBEEEEEESCCCHHHHHHHHHHHHTCC-
T ss_pred ccCccceEEEECCCCcEEEEecCcCCHHHHHHHHHHHHhccC
Confidence 235443333589888777777889999999999987654
No 49
>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1
Probab=22.57 E-value=1.8e+02 Score=19.56 Aligned_cols=72 Identities=11% Similarity=0.115 Sum_probs=43.4
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
|-..|..|.+. .+.+.. .|.+++...++|.|..... -...|.+.++ .+|+.... ..+.+.++|
T Consensus 41 vv~F~a~wC~~---C~~~~p-~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~i~-~~G~~~~~-~~G~~~~~l 114 (125)
T 1r26_A 41 VAWFTAVWCGP---CKTIER-PMEKIAYEFPTVKFAKVDADNNSEIVSKCRVLQLPTFIIA-RSGKMLGH-VIGANPGML 114 (125)
T ss_dssp EEEEECTTCHH---HHHTHH-HHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEE-EESSCHHHH
T ss_pred EEEEECCcCHh---HHHHHH-HHHHHHHHCCCCEEEEEECCCCHHHHHHcCCCcccEEEEE-eCCeEEEE-EeCCCHHHH
Confidence 44555555433 344332 2556777778899966532 2234665554 78987632 334788888
Q ss_pred HHHHHHHhC
Q psy10292 100 HDHVLKVLG 108 (168)
Q Consensus 100 l~~l~~l~g 108 (168)
.+.|.+++.
T Consensus 115 ~~~l~~~l~ 123 (125)
T 1r26_A 115 RQKLRDIIK 123 (125)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888887764
No 50
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=22.08 E-value=1.6e+02 Score=18.66 Aligned_cols=72 Identities=15% Similarity=0.093 Sum_probs=40.8
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+. .+.+.. .|.++....+ ++.|..... -...|.+.++ .+|+.... ..+.+.++
T Consensus 28 vv~f~~~~C~~---C~~~~~-~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~-~~G~~~~~ 101 (112)
T 1ep7_A 28 VVDFTATWCGP---CKMIAP-LFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITAMPTFHVY-KDGVKADD-LVGASQDK 101 (112)
T ss_dssp EEEEECTTCHH---HHHHHH-HHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCBSSEEEEE-ETTEEEEE-EESCCHHH
T ss_pred EEEEECCCCHH---HHHHHH-HHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCcccEEEEE-ECCeEEEE-EcCCCHHH
Confidence 44455555433 333332 2445555555 788865532 1224665444 78887643 23448899
Q ss_pred HHHHHHHHhC
Q psy10292 99 IHDHVLKVLG 108 (168)
Q Consensus 99 Il~~l~~l~g 108 (168)
+.+.|.+++.
T Consensus 102 l~~~l~~~l~ 111 (112)
T 1ep7_A 102 LKALVAKHAA 111 (112)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9888888764
No 51
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=21.36 E-value=1.4e+02 Score=21.89 Aligned_cols=64 Identities=8% Similarity=-0.001 Sum_probs=40.2
Q ss_pred HHhchHHHHHhCCC--CeEEEEe-----------CCCCCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhCCChHH
Q psy10292 49 VFWHFTQIQFKNPN--VQLQVFK-----------NMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQV 113 (168)
Q Consensus 49 v~~~LP~Lky~NP~--V~i~~~k-----------~~~~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~ 113 (168)
+.=-|.+|....++ |.|.... .-..-|.+. .|.||+.+.--+--.+.++|.+.|.+++......
T Consensus 54 iaPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTli-lFk~G~~v~~~~G~~~k~~l~~~i~~~l~~~~~~ 130 (140)
T 2qgv_A 54 NPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATL-VFTGGNYRGVLNGIHPWAELINLMRGLVEPQQER 130 (140)
T ss_dssp HHHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEE-EEETTEEEEEEESCCCHHHHHHHHHHHHC-----
T ss_pred HHhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEE-EEECCEEEEEEecCCCHHHHHHHHHHHhcCCCCC
Confidence 34467788888764 7886542 112246664 4579999865555677889999999888665543
No 52
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=21.18 E-value=1.5e+02 Score=18.14 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=37.4
Q ss_pred chHHHHHhCCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHHhC
Q psy10292 52 HFTQIQFKNPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLG 108 (168)
Q Consensus 52 ~LP~Lky~NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l~g 108 (168)
.|.+++...+++.|..... ....|.+.++ .+|+....-....+.+++.+.|.++++
T Consensus 37 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~l~ 103 (104)
T 2e0q_A 37 IIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFF-KDGEPVDEIIGAVPREEIEIRIKNLLG 103 (104)
T ss_dssp HHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCSSCEEEEE-ETTEEEEEEESCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCceEEEEECCCCHHHHHhCCccccCEEEEE-ECCeEhhhccCCCCHHHHHHHHHHHhc
Confidence 3556666667788865431 2234666655 799876544455788899998888775
No 53
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=21.15 E-value=90 Score=22.20 Aligned_cols=27 Identities=22% Similarity=0.523 Sum_probs=20.8
Q ss_pred EEEEEcCCCCHhHHHHHHHHHhCCChH
Q psy10292 86 EMLIDVDNKSKDEIHDHVLKVLGKSEQ 112 (168)
Q Consensus 86 ~~~Idv~nk~~~eIl~~l~~l~g~s~~ 112 (168)
...||..+++.+|+.+.+.+.+...+.
T Consensus 143 ~~~Idt~~~~~eev~~~I~~~l~~~~~ 169 (175)
T 1via_A 143 NFILNIENKNIDELLSEIKKVIKEGGS 169 (175)
T ss_dssp SEEEECTTCCHHHHHHHHHHHHC----
T ss_pred CEEEECCCCCHHHHHHHHHHHHHhcCc
Confidence 478999999999999999998887664
No 54
>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A
Probab=20.67 E-value=2e+02 Score=19.24 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=43.2
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCC-----------CCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNM-----------TPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~-----------~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
|-..|..|.+. .+.+. ..|.++...+++|.|...... ...|.+.++ .+|+....-. +.+.+++
T Consensus 50 vv~f~a~wC~~---C~~~~-~~l~~l~~~~~~v~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~G~~~~~~~-G~~~~~l 123 (139)
T 3d22_A 50 LANFSARWCGP---SRQIA-PYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFL-RDGQQVDKLV-GANKPEL 123 (139)
T ss_dssp EEEEECTTCHH---HHHHH-HHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCEESEEEEE-ETTEEEEEEE-SCCHHHH
T ss_pred EEEEECCCCHH---HHHHH-HHHHHHHHHCCCCEEEEEeCcccHHHHHHcCCCcccEEEEE-cCCeEEEEEe-CCCHHHH
Confidence 34445555433 34433 235667777788999765322 123555554 8998764333 3478888
Q ss_pred HHHHHHHhCC
Q psy10292 100 HDHVLKVLGK 109 (168)
Q Consensus 100 l~~l~~l~g~ 109 (168)
.+.|.++++.
T Consensus 124 ~~~l~~~~~~ 133 (139)
T 3d22_A 124 HKKITAILDS 133 (139)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHhcc
Confidence 8888877654
No 55
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}
Probab=20.51 E-value=2.1e+02 Score=19.95 Aligned_cols=35 Identities=11% Similarity=0.010 Sum_probs=24.3
Q ss_pred CCeEEEEeeCCcEEEEEcCCC--CHhHHHHHHHHHhCC
Q psy10292 74 TPFITTYLENGSEMLIDVDNK--SKDEIHDHVLKVLGK 109 (168)
Q Consensus 74 ~P~l~~~~~~G~~~~Idv~nk--~~~eIl~~l~~l~g~ 109 (168)
.|.+.++-.+|+..... -.. +.+++++.|.+++++
T Consensus 117 ~Pt~~~~d~~G~~~~~~-G~~~~~~~~l~~~l~~~l~~ 153 (154)
T 2ju5_A 117 FPELVFIDAEGKQLARM-GFEPGGGAAYVSKVKSALKL 153 (154)
T ss_dssp SSEEEEECTTCCEEEEE-CCCTTCHHHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCCEEEEe-cCCCCCHHHHHHHHHHHHhc
Confidence 35554444689887554 444 789999999988765
No 56
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=20.51 E-value=1.6e+02 Score=18.32 Aligned_cols=71 Identities=10% Similarity=0.107 Sum_probs=39.2
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCC-CCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNP-NVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDE 98 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP-~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~e 98 (168)
|-..|..|.+ ..+.+.. .|.++....+ ++.|..... -...|.+.++ .+|+....-....+.++
T Consensus 22 ~v~f~~~~C~---~C~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~ 96 (105)
T 1fb6_A 22 MVDFWAPWCG---PCKLIAP-VIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFF-KNGERKESIIGAVPKST 96 (105)
T ss_dssp EEEEECTTCH---HHHHHHH-HHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCSSSEEEEE-ETTEEEEEEEECCCHHH
T ss_pred EEEEECCCCh---HHHHHHH-HHHHHHHHhcCceEEEEEcCcchHHHHHhCCCCcccEEEEE-eCCeEEEEEecCCCHHH
Confidence 4444554443 3333332 2455555554 477755421 1234665444 78988755455567788
Q ss_pred HHHHHHHH
Q psy10292 99 IHDHVLKV 106 (168)
Q Consensus 99 Il~~l~~l 106 (168)
+.+.|.++
T Consensus 97 l~~~l~~~ 104 (105)
T 1fb6_A 97 LTDSIEKY 104 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 88877765
No 57
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=20.22 E-value=1.9e+02 Score=18.90 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=42.1
Q ss_pred EEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC-----------CCCCCeEEEEeeCCcEEEEEcCCCCHhHH
Q psy10292 31 FAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN-----------MTPTPFITTYLENGSEMLIDVDNKSKDEI 99 (168)
Q Consensus 31 l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~-----------~~~~P~l~~~~~~G~~~~Idv~nk~~~eI 99 (168)
|-..|..|.+. .+.+. ..|.+++...++|.|..... -..-|.+.++ .+|+.... ..+.+.++|
T Consensus 35 lv~F~a~wC~~---C~~~~-p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~~Pt~~~~-~~G~~~~~-~~G~~~~~l 108 (116)
T 3qfa_C 35 VVDFSATWCGP---SKMIK-PFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKSMPTFQFF-KKGQKVGE-FSGANKEKL 108 (116)
T ss_dssp EEEEECTTCHH---HHHHH-HHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCSSSEEEEE-SSSSEEEE-EESCCHHHH
T ss_pred EEEEECCCCHH---HHHHH-HHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCccccEEEEE-eCCeEEEE-EcCCCHHHH
Confidence 44455555433 33332 24566777778888866532 1224666555 78887643 334488888
Q ss_pred HHHHHHHh
Q psy10292 100 HDHVLKVL 107 (168)
Q Consensus 100 l~~l~~l~ 107 (168)
.+.|.+++
T Consensus 109 ~~~l~~~l 116 (116)
T 3qfa_C 109 EATINELV 116 (116)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 88887653
No 58
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0
Probab=20.09 E-value=49 Score=22.12 Aligned_cols=86 Identities=10% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHHHHHhccCcccc-CCceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeC--------CCCCCeEEEEe
Q psy10292 11 RRTLKYLNAGRIVFK-DKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKN--------MTPTPFITTYL 81 (168)
Q Consensus 11 ~rtl~yL~~g~~~l~-~~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~--------~~~~P~l~~~~ 81 (168)
++.+..|++-.-.++ ++|..+.|+......+..-+++|+..+ +...++....+ ....|.+-+.-
T Consensus 50 ~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~-------~~~~~~~~d~~~~~~~~~~v~~~P~~~lid 122 (145)
T 3erw_A 50 KKELPQFQSFYDAHPSDSVKLVTVNLVNSEQNQQVVEDFIKAN-------KLTFPIVLDSKGELMKEYHIITIPTSFLLN 122 (145)
T ss_dssp HHHHHHHHHHHHHCCCSSEEEEEEECGGGSSCHHHHHHHHHHT-------TCCSCEEECSSSHHHHHTTCCEESEEEEEC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEEEccCCcCCHHHHHHHHHHc-------CCceeEEEcCchhHHHhcCcCccCeEEEEc
Confidence 344455555555555 567777777754433455566666542 22333332211 11135444444
Q ss_pred eCCcEEEEEcCCCCHhHHHHHH
Q psy10292 82 ENGSEMLIDVDNKSKDEIHDHV 103 (168)
Q Consensus 82 ~~G~~~~Idv~nk~~~eIl~~l 103 (168)
.+|+....-.-..+.+++.+.|
T Consensus 123 ~~G~i~~~~~g~~~~~~l~~~l 144 (145)
T 3erw_A 123 EKGEIEKTKIGPMTAEQLKEWT 144 (145)
T ss_dssp TTCCEEEEEESCCCHHHHHHHH
T ss_pred CCCcEEEEEcCCcCHHHHHHhh
Confidence 6888877666677888877655
Done!