BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10293
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5I0H4|TMCO1_RAT Transmembrane and coiled-coil domains protein 1 OS=Rattus
norvegicus GN=Tmco1 PE=2 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|Q5R9B0|TMCO1_PONAB Transmembrane and coiled-coil domain-containing protein 1 OS=Pongo
abelii GN=TMCO1 PE=2 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|C5HGF3|TMCO1_PIG Transmembrane and coiled-coil domains protein 1 OS=Sus scrofa
GN=TMCO1 PE=2 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|Q921L3|TMCO1_MOUSE Transmembrane and coiled-coil domain-containing protein 1 OS=Mus
musculus GN=Tmco1 PE=2 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|Q9UM00|TMCO1_HUMAN Transmembrane and coiled-coil domain-containing protein 1 OS=Homo
sapiens GN=TMCO1 PE=1 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|Q3T0N3|TMCO1_BOVIN Transmembrane and coiled-coil domain-containing protein 1 OS=Bos
taurus GN=TMCO1 PE=2 SV=1
Length = 188
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 127/179 (70%), Positives = 154/179 (86%), Gaps = 2/179 (1%)
Query: 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTL--LDK 58
M+ADTLLIVFISVCTALL+EG+TW+LVYRT+KY++LK E+EKQ +K ++ E+ +
Sbjct: 4 MFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLEKKKETITESAGR 63
Query: 59 NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPIS 118
KKKIER+EE+LKNNN+DL+MV+MKSMFAIGF FTAL+ MFN+IFDG++VAKLPFTP+S
Sbjct: 64 QQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLS 123
Query: 119 WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAAKQGGGMFGTQP 177
++QGLSHRNL G+D TDCSFIFLYILCTMSIRQNIQK+LG APSR A KQ GG G P
Sbjct: 124 YIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 182
>sp|Q54TU8|TMCO1_DICDI Transmembrane and coiled-coil domain-containing protein 1 homolog
OS=Dictyostelium discoideum GN=tmco1 PE=2 SV=1
Length = 186
Score = 172 bits (436), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 85/167 (50%), Positives = 120/167 (71%), Gaps = 6/167 (3%)
Query: 4 DTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEK---QMEK--KKEAIESTLLDK 58
+ L I+F+S+ ++L SEG++WLLVYRTE Y++ K I++ Q++K +E+ S+L K
Sbjct: 5 EVLFILFVSIASSLASEGVSWLLVYRTENYKRGKANIDRLQIQLDKLVDQESETSSLSKK 64
Query: 59 -NVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPI 117
N KKIE+ EE+LK NK+L+ KMKSMFA+ + AL S N IFDG +V KLPF PI
Sbjct: 65 GNKDKKIEKIEEQLKIANKELSFSKMKSMFAVAISMIALFSYLNRIFDGVVVCKLPFVPI 124
Query: 118 SWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRT 164
++QG+SHR ++G+DYTDCS F+Y +C+M IR NIQ +LG AP +T
Sbjct: 125 GFLQGISHRTIAGDDYTDCSMTFIYAICSMFIRNNIQLILGTAPPKT 171
>sp|Q14678|KANK1_HUMAN KN motif and ankyrin repeat domain-containing protein 1 OS=Homo
sapiens GN=KANK1 PE=1 SV=3
Length = 1352
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMK 84
TE + TE +K++E +++ IES +K+KI R E +L+ D M K+K
Sbjct: 441 TEAMLGVMTEADKEIELQQQTIES------LKEKIYRLEVQLRETTHDREMTKLK 489
>sp|Q8GUI6|JMJ14_ARATH Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana
GN=JMJ14 PE=1 SV=1
Length = 954
Score = 32.0 bits (71), Expect = 2.2, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 47 KKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMF 87
K+ E LL K VKK+++ EEERL + ++ KM+ F
Sbjct: 471 KRVCSEDGLLTKAVKKRVQMEEERLNHLQDGFSLRKMEGDF 511
>sp|Q4VCS5|AMOT_HUMAN Angiomotin OS=Homo sapiens GN=AMOT PE=1 SV=1
Length = 1084
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 29 RTEKYQKLKTEIEKQMEKKKEAIEST----LLDKNVKKKIEREEERLKNNNKDL 78
+ + QK++TEI++ E + ++S+ L+K ++ K+E E R+ + N+DL
Sbjct: 458 KVARLQKVETEIQRVSEAYENLVKSSSKREALEKAMRNKLEGEIRRMHDFNRDL 511
>sp|Q8VHG2|AMOT_MOUSE Angiomotin OS=Mus musculus GN=Amot PE=1 SV=3
Length = 1126
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 29 RTEKYQKLKTEIEKQMEKKKEAIEST----LLDKNVKKKIEREEERLKNNNKDL 78
+ + QK++TEI++ E + ++S+ L+K ++ K+E E R+ + N+DL
Sbjct: 437 KVARLQKVETEIQRVSEAYENLVKSSSKREALEKAMRNKLEGEIRRMHDFNRDL 490
>sp|A7HWQ4|RPOB_PARL1 DNA-directed RNA polymerase subunit beta OS=Parvibaculum
lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
GN=rpoB PE=3 SV=1
Length = 1362
Score = 31.6 bits (70), Expect = 2.7, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 18 LSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEE 69
LS G W + + EK Q ++KQ ++ KE +E+ DK K++R +E
Sbjct: 1012 LSHGQWWQIALKNEKAQSEIEALKKQYDESKERLEARFADK--VDKLQRGDE 1061
>sp|Q54BT3|ABCB2_DICDI ABC transporter B family member 2 OS=Dictyostelium discoideum
GN=abcB2 PE=3 SV=1
Length = 1397
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 10/167 (5%)
Query: 2 WADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVK 61
W TL+I ++ A +T ++ T+K Q + E+K +I +
Sbjct: 285 WQLTLVIFALTPLIAAAGAFMTKMMADLTKKGQDAYAKAGGVAEEKIGSIRTVSTFSGEP 344
Query: 62 KKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIF--DGKIVAKLPFTPISW 119
+++R ERLK T + + IG F L ++ F GK++ + P+
Sbjct: 345 FEVKRYTERLKEALDIGTKKGIMNGIGIGLVFLVLFGTYSLSFWYGGKLIVDRKWNPV-- 402
Query: 120 VQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPSRTAA 166
R G D + F I+ M++ Q + FA R AA
Sbjct: 403 ----PDRPWQGGDV--LTVFFSVIMGAMALGQASPNVASFANGRGAA 443
>sp|P40528|SYG1_YEAST Protein SYG1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SYG1 PE=1 SV=1
Length = 902
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 24 WLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKM 83
WL+ ++ K + + K+ +KK E ++S L +++K ER+ ++N D++
Sbjct: 99 WLISFQLSKCNEFYLWLLKECDKKFEVLQSQLHYYSLQKNYERDNLNRSSSNVDMS---- 154
Query: 84 KSMFAIGFA 92
S++A G A
Sbjct: 155 TSLYAAGLA 163
>sp|Q08378|GOGA3_HUMAN Golgin subfamily A member 3 OS=Homo sapiens GN=GOLGA3 PE=1 SV=2
Length = 1498
Score = 31.6 bits (70), Expect = 2.8, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 20 EGLTWLLVYRTEKYQKLKTEI---EKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNK 76
E L W + + + Q LK ++ E+Q K+ E ++ L +NVK ++E +E L K
Sbjct: 1287 ENLKWEVDQKEREIQSLKQQLDLTEQQGRKELEGLQQLL--QNVKSELEMAQEDLSMTQK 1344
Query: 77 DLTMVKMK 84
D M++ K
Sbjct: 1345 DKFMLQAK 1352
>sp|E1BEQ5|AMOL1_BOVIN Angiomotin-like protein 1 OS=Bos taurus GN=AMOTL1 PE=3 SV=1
Length = 960
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 31 EKYQKLKTEIEKQMEKKKEAIESTL----LDKNVKKKIEREEERLKNNNKDL 78
+K K + E+++ E + ++ST LDK ++ K+E E RL + N+DL
Sbjct: 469 DKLHKFEKELQRISEAYESLVKSTTKRESLDKAMRNKLEGEIRRLHDFNRDL 520
>sp|A8T6P4|MYRIP_DANRE Rab effector MyRIP OS=Danio rerio GN=myrip PE=1 SV=1
Length = 838
Score = 31.6 bits (70), Expect = 3.2, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 31/50 (62%), Gaps = 6/50 (12%)
Query: 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDL 78
+ EK ++ + EIE Q+EKK+E K ++K++++E+ER +DL
Sbjct: 782 QIEKDRERRREIEMQVEKKQER------QKEMEKQLKQEQERQSEIERDL 825
>sp|Q8IY63|AMOL1_HUMAN Angiomotin-like protein 1 OS=Homo sapiens GN=AMOTL1 PE=1 SV=1
Length = 956
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 31 EKYQKLKTEIEKQMEKKKEAIESTL----LDKNVKKKIEREEERLKNNNKDL 78
+K K + E+++ E + ++ST LDK ++ K+E E RL + N+DL
Sbjct: 467 DKLHKFEKELQRISEAYESLVKSTTKRESLDKAMRNKLEGEIRRLHDFNRDL 518
>sp|P55937|GOGA3_MOUSE Golgin subfamily A member 3 OS=Mus musculus GN=Golga3 PE=1 SV=3
Length = 1487
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
Query: 20 EGLTWLLVYRTEKYQKLKTEI---EKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNK 76
E L W L + + Q LK ++ E+Q +K+ E + TL + +K ++E +E L K
Sbjct: 1283 EDLKWELDQKEREIQSLKQQLDLTEQQGKKELEGTQQTL--QTIKSELEMVQEDLSETQK 1340
Query: 77 DLTMVKMK 84
D M++ K
Sbjct: 1341 DKFMLQAK 1348
>sp|Q8K3M5|CABL2_MOUSE CDK5 and ABL1 enzyme substrate 2 OS=Mus musculus GN=Cables2 PE=1
SV=1
Length = 481
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 51 IESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSM 99
I S L VK+ I++ EER + N KDL IGF FT L+++
Sbjct: 421 ISSDLRKSEVKQLIDKLEERFRFNRKDL----------IGFEFTVLVAL 459
>sp|P49025|CTRO_MOUSE Citron Rho-interacting kinase OS=Mus musculus GN=Cit PE=1 SV=3
Length = 2055
Score = 30.4 bits (67), Expect = 6.2, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMK 84
K Q+L+ ++EK ++ EA E + K++ ERE E+L N +K K
Sbjct: 636 KIQELQEKLEKAVKASTEATELLQNIRQAKERAERELEKLHNREDSSEGIKKK 688
>sp|O14578|CTRO_HUMAN Citron Rho-interacting kinase OS=Homo sapiens GN=CIT PE=1 SV=2
Length = 2027
Score = 30.4 bits (67), Expect = 6.5, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMK 84
K Q+L+ ++EK ++ EA E + K++ ERE E+L+N ++ K
Sbjct: 637 KIQELQEKLEKAVKASTEATELLQNIRQAKERAERELEKLQNREDSSEGIRKK 689
>sp|B8D298|MUTS2_HALOH MutS2 protein OS=Halothermothrix orenii (strain H 168 / OCM 544 /
DSM 9562) GN=mutS2 PE=3 SV=1
Length = 791
Score = 30.0 bits (66), Expect = 7.4, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 30/48 (62%), Gaps = 6/48 (12%)
Query: 31 EKYQKLKTEIEKQME---KKKEAIESTLLDKNVKKK---IEREEERLK 72
+KY++LK EIE+++E KK++ +S L D +KK E EE L+
Sbjct: 535 KKYEQLKIEIEERLEAVKKKEQKYDSLLTDLEKRKKKLITEAREEALQ 582
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,072,452
Number of Sequences: 539616
Number of extensions: 2429421
Number of successful extensions: 17279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 139
Number of HSP's that attempted gapping in prelim test: 16438
Number of HSP's gapped (non-prelim): 885
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)