Query psy10293
Match_columns 179
No_of_seqs 121 out of 141
Neff 5.8
Searched_HMMs 46136
Date Fri Aug 16 22:44:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10293.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10293hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3312|consensus 100.0 1.6E-66 3.4E-71 409.1 12.1 177 1-178 4-183 (186)
2 PF01956 DUF106: Integral memb 100.0 3E-41 6.5E-46 269.8 16.1 153 4-161 15-168 (168)
3 COG1422 Predicted membrane pro 100.0 1.2E-31 2.6E-36 219.8 18.2 152 5-162 47-200 (201)
4 KOG3188|consensus 99.7 1.3E-16 2.8E-21 132.1 11.2 85 77-161 106-192 (246)
5 PF04420 CHD5: CHD5-like prote 98.0 1E-05 2.2E-10 64.9 5.8 114 29-146 38-160 (161)
6 PRK02201 putative inner membra 96.8 0.05 1.1E-06 49.0 14.4 89 7-102 136-227 (357)
7 COG1422 Predicted membrane pro 95.9 0.24 5.2E-06 41.4 12.1 81 13-98 51-133 (201)
8 PF01956 DUF106: Integral memb 95.1 0.32 7E-06 38.6 10.1 133 10-146 17-150 (168)
9 PRK01318 membrane protein inse 94.8 1.3 2.8E-05 41.8 14.8 108 29-161 348-459 (521)
10 TIGR03592 yidC_oxa1_cterm memb 94.7 0.8 1.7E-05 37.0 11.6 43 7-49 5-47 (181)
11 PRK01622 OxaA-like protein pre 94.4 0.35 7.6E-06 41.4 9.2 60 30-97 90-149 (256)
12 PRK00145 putative inner membra 94.2 2.9 6.3E-05 35.0 15.1 36 66-101 80-118 (223)
13 PRK02944 OxaA-like protein pre 94.1 0.65 1.4E-05 39.8 10.3 62 31-101 86-150 (255)
14 PRK02654 putative inner membra 93.5 0.64 1.4E-05 42.0 9.3 66 24-98 47-114 (375)
15 PF02096 60KD_IMP: 60Kd inner 93.3 2.6 5.6E-05 34.0 12.0 37 85-124 74-110 (198)
16 PRK01315 putative inner membra 91.2 11 0.00023 33.8 14.7 37 66-102 91-130 (329)
17 PRK02463 OxaA-like protein pre 91.1 1.4 3E-05 39.0 8.4 62 30-99 90-156 (307)
18 PRK00247 putative inner membra 90.7 9.2 0.0002 35.5 13.6 65 31-103 59-126 (429)
19 COG0706 YidC Preprotein transl 90.2 2.8 6E-05 36.9 9.5 83 9-103 115-200 (314)
20 PF00957 Synaptobrevin: Synapt 90.1 5.2 0.00011 28.3 10.7 21 30-50 2-22 (89)
21 PRK03449 putative inner membra 90.0 4.8 0.0001 35.6 10.8 38 66-103 81-121 (304)
22 PF02096 60KD_IMP: 60Kd inner 87.7 8.8 0.00019 30.9 10.2 30 67-97 53-82 (198)
23 PF05529 Bap31: B-cell recepto 87.5 8.3 0.00018 31.1 9.9 22 59-80 158-179 (192)
24 PRK01001 putative inner membra 86.7 7.3 0.00016 38.7 10.6 58 31-101 603-663 (795)
25 KOG4253|consensus 86.2 7.7 0.00017 31.5 8.7 16 136-151 154-169 (175)
26 PRK11546 zraP zinc resistance 85.4 14 0.0003 29.3 9.8 76 6-82 9-109 (143)
27 PF00558 Vpu: Vpu protein; In 85.0 1 2.3E-05 32.5 3.0 46 8-53 7-52 (81)
28 PRK00888 ftsB cell division pr 84.7 7.2 0.00016 29.1 7.6 29 21-49 14-45 (105)
29 PF10805 DUF2730: Protein of u 82.2 18 0.00039 26.9 9.4 64 14-79 19-82 (106)
30 PF14282 FlxA: FlxA-like prote 82.1 6.9 0.00015 29.1 6.6 52 31-82 19-71 (106)
31 PF06476 DUF1090: Protein of u 82.0 4.6 9.9E-05 30.8 5.6 21 58-78 92-112 (115)
32 PRK06342 transcription elongat 81.6 5 0.00011 32.2 6.0 51 29-82 32-84 (160)
33 PRK04654 sec-independent trans 81.2 22 0.00048 30.1 9.9 71 2-79 6-85 (214)
34 PF13858 DUF4199: Protein of u 78.5 28 0.00061 26.8 11.0 35 8-42 70-106 (163)
35 PF06305 DUF1049: Protein of u 77.1 14 0.0003 24.6 6.3 12 7-18 22-33 (68)
36 PF04210 MtrG: Tetrahydrometha 75.6 25 0.00055 24.7 8.6 61 29-104 10-70 (70)
37 COG3883 Uncharacterized protei 74.8 23 0.00051 30.8 8.5 31 13-43 20-50 (265)
38 PF05529 Bap31: B-cell recepto 74.5 36 0.00079 27.4 9.2 19 60-78 166-184 (192)
39 PF14584 DUF4446: Protein of u 72.9 46 0.00099 26.5 9.6 12 32-43 24-35 (151)
40 PF12732 YtxH: YtxH-like prote 72.6 28 0.00061 23.9 7.9 39 11-50 3-41 (74)
41 PRK09609 hypothetical protein; 72.4 24 0.00053 31.5 8.1 32 14-46 96-127 (312)
42 PF06936 Selenoprotein_S: Sele 70.5 21 0.00046 29.5 7.0 19 33-51 78-96 (190)
43 PRK11020 hypothetical protein; 70.0 22 0.00047 27.4 6.4 46 32-82 6-51 (118)
44 COG4920 Predicted membrane pro 69.9 31 0.00066 29.4 7.8 18 20-37 43-60 (249)
45 KOG0981|consensus 68.7 15 0.00032 35.7 6.3 49 31-79 636-700 (759)
46 PF05992 SbmA_BacA: SbmA/BacA- 68.6 88 0.0019 28.0 13.8 74 65-161 110-186 (315)
47 PF06305 DUF1049: Protein of u 65.9 36 0.00078 22.5 6.9 19 6-24 25-43 (68)
48 PRK01885 greB transcription el 65.5 25 0.00055 27.9 6.3 52 29-81 8-73 (157)
49 PHA03049 IMV membrane protein; 65.5 8.5 0.00018 26.8 3.1 21 1-21 1-21 (68)
50 PRK01026 tetrahydromethanopter 65.2 48 0.001 23.7 8.9 61 29-104 13-73 (77)
51 PF10732 DUF2524: Protein of u 64.4 40 0.00087 24.5 6.5 49 28-78 34-82 (84)
52 PF05961 Chordopox_A13L: Chord 64.0 6.9 0.00015 27.3 2.4 21 1-21 1-21 (68)
53 PF10828 DUF2570: Protein of u 63.2 60 0.0013 24.1 8.9 22 22-43 16-37 (110)
54 KOG3385|consensus 62.8 56 0.0012 25.2 7.4 46 58-103 60-116 (118)
55 PF14362 DUF4407: Domain of un 62.1 75 0.0016 27.3 9.1 31 9-39 87-117 (301)
56 KOG4403|consensus 61.5 44 0.00095 31.5 7.8 26 4-35 216-241 (575)
57 TIGR02209 ftsL_broad cell divi 61.0 52 0.0011 22.7 8.1 10 33-42 26-35 (85)
58 TIGR01461 greB transcription e 60.9 36 0.00077 27.0 6.4 53 29-82 6-72 (156)
59 PF07074 TRAP-gamma: Transloco 60.4 94 0.002 25.5 8.7 25 3-27 45-69 (170)
60 PF10883 DUF2681: Protein of u 57.5 72 0.0016 23.2 8.4 29 11-43 7-35 (87)
61 PF05781 MRVI1: MRVI1 protein; 57.2 41 0.0009 32.2 7.0 43 62-106 457-499 (538)
62 PF08514 STAG: STAG domain ; 57.2 63 0.0014 24.4 6.9 13 60-72 105-117 (118)
63 PF03904 DUF334: Domain of unk 56.3 86 0.0019 26.9 8.1 9 25-33 86-94 (230)
64 PF14182 YgaB: YgaB-like prote 55.2 67 0.0014 23.1 6.2 45 31-80 14-58 (79)
65 PRK09173 F0F1 ATP synthase sub 55.0 99 0.0021 24.0 8.9 8 21-28 17-24 (159)
66 PF04065 Not3: Not1 N-terminal 54.4 20 0.00044 30.6 4.2 16 34-49 4-19 (233)
67 PF12794 MscS_TM: Mechanosensi 54.4 72 0.0016 28.3 7.9 38 64-103 290-327 (340)
68 PF03449 GreA_GreB_N: Transcri 54.1 72 0.0016 22.2 6.7 51 29-80 7-71 (74)
69 KOG0860|consensus 54.0 99 0.0022 23.8 10.1 19 29-47 27-45 (116)
70 KOG1962|consensus 53.5 1.4E+02 0.0029 25.4 8.9 20 7-26 105-124 (216)
71 PF11460 DUF3007: Protein of u 53.4 51 0.0011 24.9 5.7 9 63-71 94-102 (104)
72 PRK11637 AmiB activator; Provi 53.4 99 0.0021 28.0 8.8 9 33-41 49-57 (428)
73 KOG2391|consensus 53.2 1.1E+02 0.0025 27.8 8.8 16 64-79 255-270 (365)
74 PRK01919 tatB sec-independent 52.8 1.3E+02 0.0028 24.7 9.1 13 3-15 7-19 (169)
75 PRK11677 hypothetical protein; 52.7 82 0.0018 24.7 7.0 36 8-43 5-41 (134)
76 PRK10722 hypothetical protein; 52.2 30 0.00065 29.9 4.8 47 30-82 164-213 (247)
77 PF04120 Iron_permease: Low af 52.1 1.1E+02 0.0024 23.8 7.8 64 14-78 48-114 (132)
78 PRK12772 bifunctional flagella 51.7 38 0.00083 32.7 6.0 9 44-52 484-492 (609)
79 PF11712 Vma12: Endoplasmic re 51.5 77 0.0017 24.5 6.8 32 64-98 65-96 (142)
80 PF03268 DUF267: Caenorhabditi 51.2 1.9E+02 0.0042 26.3 11.2 26 21-51 171-196 (353)
81 PF10805 DUF2730: Protein of u 51.2 98 0.0021 22.9 7.9 54 14-81 15-70 (106)
82 PF04977 DivIC: Septum formati 51.0 60 0.0013 21.7 5.5 13 31-43 17-29 (80)
83 PF15061 DUF4538: Domain of un 50.9 19 0.0004 24.5 2.7 27 11-39 16-42 (58)
84 PF10779 XhlA: Haemolysin XhlA 50.6 78 0.0017 21.6 9.8 15 65-79 30-44 (71)
85 TIGR02857 CydD thiol reductant 50.5 2E+02 0.0042 26.5 10.4 20 60-79 100-119 (529)
86 KOG1666|consensus 50.5 1.6E+02 0.0034 25.1 10.3 52 29-80 126-181 (220)
87 TIGR01462 greA transcription e 49.8 48 0.001 25.9 5.4 53 29-82 3-69 (151)
88 TIGR00328 flhB flagellar biosy 49.7 50 0.0011 29.7 6.1 10 44-53 221-230 (347)
89 KOG2150|consensus 49.4 28 0.0006 33.5 4.6 14 59-72 49-62 (575)
90 TIGR01404 FlhB_rel_III type II 47.8 55 0.0012 29.3 6.1 9 44-52 220-228 (342)
91 PF04888 SseC: Secretion syste 47.7 1.6E+02 0.0035 25.2 8.9 19 60-79 38-56 (306)
92 TIGR02209 ftsL_broad cell divi 47.4 91 0.002 21.4 7.9 12 32-43 32-43 (85)
93 PF07439 DUF1515: Protein of u 47.2 1.3E+02 0.0027 23.1 7.0 21 31-51 8-28 (112)
94 PRK12721 secretion system appa 47.2 54 0.0012 29.5 5.9 9 44-52 221-229 (349)
95 PF13942 Lipoprotein_20: YfhG 47.1 60 0.0013 26.8 5.6 48 29-82 117-167 (179)
96 PRK02201 putative inner membra 47.0 2.2E+02 0.0048 25.8 10.6 36 71-106 186-227 (357)
97 PRK12704 phosphodiesterase; Pr 46.9 2.2E+02 0.0047 27.1 10.1 9 18-26 16-24 (520)
98 PF04977 DivIC: Septum formati 46.5 42 0.00091 22.5 4.1 13 31-43 24-36 (80)
99 PRK06298 type III secretion sy 46.3 59 0.0013 29.3 6.1 9 44-52 222-230 (356)
100 PF04678 DUF607: Protein of un 45.9 1.6E+02 0.0034 23.7 9.2 57 60-120 72-128 (180)
101 KOG0804|consensus 45.5 48 0.001 31.2 5.4 13 60-72 433-445 (493)
102 TIGR01149 mtrG N5-methyltetrah 45.5 1.1E+02 0.0023 21.6 8.6 57 29-100 10-66 (70)
103 PF14193 DUF4315: Domain of un 44.1 98 0.0021 22.3 5.8 20 32-51 2-21 (83)
104 PRK01770 sec-independent trans 44.1 1.8E+02 0.0038 23.8 8.8 24 3-26 7-37 (171)
105 PF08285 DPM3: Dolichol-phosph 43.9 1.1E+02 0.0024 22.3 6.1 20 30-49 67-86 (91)
106 PRK08156 type III secretion sy 43.8 65 0.0014 29.2 5.9 32 21-53 194-225 (361)
107 PRK12468 flhB flagellar biosyn 43.8 69 0.0015 29.3 6.1 9 44-52 228-236 (386)
108 PRK09108 type III secretion sy 43.5 69 0.0015 28.9 6.0 9 44-52 223-231 (353)
109 PRK13109 flhB flagellar biosyn 43.2 72 0.0016 28.8 6.1 9 44-52 230-238 (358)
110 PF13314 DUF4083: Domain of un 42.6 80 0.0017 21.4 4.8 21 7-27 12-32 (58)
111 COG4988 CydD ABC-type transpor 42.5 2.4E+02 0.0052 27.3 9.7 55 63-119 99-157 (559)
112 PF08496 Peptidase_S49_N: Pept 42.3 81 0.0018 25.2 5.7 13 31-43 49-61 (155)
113 PRK15374 pathogenicity island 42.1 3.4E+02 0.0073 26.4 11.0 33 63-95 299-332 (593)
114 PRK05892 nucleoside diphosphat 41.4 1.2E+02 0.0027 24.0 6.6 52 29-81 9-73 (158)
115 PF09973 DUF2208: Predicted me 41.3 2.3E+02 0.0049 24.3 8.9 39 57-96 67-105 (233)
116 PRK11677 hypothetical protein; 41.3 1.7E+02 0.0037 22.9 9.9 43 9-51 3-45 (134)
117 PRK13455 F0F1 ATP synthase sub 41.3 1.8E+02 0.004 23.2 9.3 15 4-18 29-43 (184)
118 PF09991 DUF2232: Predicted me 41.2 2E+02 0.0044 23.7 13.2 21 29-49 111-131 (290)
119 PF11853 DUF3373: Protein of u 41.2 56 0.0012 30.9 5.2 11 40-50 36-46 (489)
120 PF12072 DUF3552: Domain of un 41.1 2E+02 0.0043 23.5 9.9 18 10-27 4-21 (201)
121 PRK05702 flhB flagellar biosyn 41.0 86 0.0019 28.3 6.3 10 44-53 228-237 (359)
122 PRK10920 putative uroporphyrin 40.9 2.9E+02 0.0063 25.4 10.2 13 67-79 111-123 (390)
123 PRK13729 conjugal transfer pil 40.8 94 0.002 29.4 6.6 20 59-78 101-120 (475)
124 PF12597 DUF3767: Protein of u 40.6 1E+02 0.0022 23.5 5.8 36 12-49 72-107 (118)
125 PRK14474 F0F1 ATP synthase sub 40.5 2.3E+02 0.005 24.1 10.2 26 1-26 1-26 (250)
126 PF06295 DUF1043: Protein of u 40.2 1.7E+02 0.0036 22.4 9.6 19 62-80 57-75 (128)
127 cd07599 BAR_Rvs167p The Bin/Am 40.1 77 0.0017 25.9 5.4 18 62-79 156-173 (216)
128 PRK09174 F0F1 ATP synthase sub 39.9 2.2E+02 0.0047 23.6 9.6 16 12-27 60-75 (204)
129 KOG1510|consensus 38.1 1.6E+02 0.0034 23.4 6.5 18 59-76 113-130 (139)
130 PF02388 FemAB: FemAB family; 37.1 1.3E+02 0.0029 27.2 6.9 23 59-81 270-292 (406)
131 PF03962 Mnd1: Mnd1 family; I 37.1 1.4E+02 0.003 24.4 6.5 20 60-79 108-127 (188)
132 PF05366 Sarcolipin: Sarcolipi 36.8 42 0.00091 19.7 2.4 22 11-33 10-31 (31)
133 PF11833 DUF3353: Protein of u 36.5 85 0.0018 25.9 5.1 12 38-49 7-18 (194)
134 PF02949 7tm_6: 7tm Odorant re 36.4 2.3E+02 0.005 22.9 12.1 28 16-43 15-42 (313)
135 KOG4552|consensus 36.3 2.6E+02 0.0057 24.0 8.0 54 24-79 50-105 (272)
136 PF13801 Metal_resist: Heavy-m 36.3 1.5E+02 0.0032 20.7 7.2 28 57-84 82-109 (125)
137 PF04156 IncA: IncA protein; 35.9 2.2E+02 0.0047 22.5 8.9 24 7-30 42-65 (191)
138 PF05008 V-SNARE: Vesicle tran 35.4 1.2E+02 0.0025 20.6 5.0 14 64-77 63-76 (79)
139 KOG3032|consensus 35.3 1.3E+02 0.0029 26.0 6.1 13 31-43 167-179 (264)
140 PF04547 Anoctamin: Calcium-ac 35.3 3.4E+02 0.0074 24.6 9.4 27 81-107 325-351 (452)
141 PHA01750 hypothetical protein 35.2 1.6E+02 0.0034 20.7 8.4 17 62-78 56-72 (75)
142 COG2348 Peptidoglycan interpep 35.2 1E+02 0.0023 28.6 5.9 48 32-79 247-297 (418)
143 cd07590 BAR_Bin3 The Bin/Amphi 34.4 53 0.0012 27.7 3.7 16 64-79 154-169 (225)
144 PF06273 eIF-4B: Plant specifi 34.2 80 0.0017 29.9 5.0 50 30-79 365-420 (492)
145 KOG1029|consensus 33.9 1E+02 0.0023 31.2 5.9 14 29-42 318-331 (1118)
146 PF06936 Selenoprotein_S: Sele 33.7 1.3E+02 0.0028 24.9 5.7 9 99-107 121-129 (190)
147 PF15079 DUF4546: Domain of un 33.4 1.5E+02 0.0033 24.5 6.0 47 32-79 48-99 (205)
148 PF15062 ARL6IP6: Haemopoietic 33.4 29 0.00062 25.3 1.6 21 9-29 26-46 (85)
149 PF01312 Bac_export_2: FlhB Hr 33.2 53 0.0012 29.3 3.7 9 44-52 223-231 (343)
150 TIGR03321 alt_F1F0_F0_B altern 33.1 2.9E+02 0.0064 23.1 10.2 26 1-26 1-26 (246)
151 PF04568 IATP: Mitochondrial A 32.7 1.7E+02 0.0037 21.8 5.7 11 60-70 88-98 (100)
152 cd07607 BAR_SH3P_plant The Bin 32.6 1.9E+02 0.0041 24.3 6.5 49 31-79 109-160 (209)
153 PF08229 SHR3_chaperone: ER me 32.2 95 0.0021 25.9 4.7 28 13-42 143-170 (196)
154 PRK13461 F0F1 ATP synthase sub 31.8 2.4E+02 0.0053 21.8 10.2 24 3-26 3-26 (159)
155 KOG0569|consensus 31.7 1.8E+02 0.0039 27.4 7.0 46 7-53 185-231 (485)
156 PRK06975 bifunctional uroporph 31.5 4.3E+02 0.0093 25.7 9.8 8 11-18 335-342 (656)
157 PTZ00046 rifin; Provisional 31.3 1E+02 0.0023 28.0 5.2 14 91-104 151-166 (358)
158 KOG2470|consensus 30.8 1.8E+02 0.004 27.0 6.6 71 15-87 372-445 (510)
159 PF00429 TLV_coat: ENV polypro 30.6 1.5E+02 0.0033 28.3 6.5 32 17-50 412-443 (561)
160 COG4298 Uncharacterized protei 30.6 1.3E+02 0.0028 22.2 4.6 33 9-43 50-82 (95)
161 COG4191 Signal transduction hi 30.5 5E+02 0.011 25.4 9.7 15 65-79 362-376 (603)
162 PF09429 Wbp11: WW domain bind 30.4 1.4E+02 0.0029 21.0 4.7 17 57-73 59-75 (78)
163 PF08390 TRAM1: TRAM1-like pro 30.4 82 0.0018 21.3 3.4 23 134-156 27-49 (65)
164 PF07946 DUF1682: Protein of u 30.3 1.8E+02 0.004 25.5 6.5 9 29-37 253-261 (321)
165 PF11026 DUF2721: Protein of u 30.2 2.5E+02 0.0054 21.4 9.1 19 31-49 21-39 (130)
166 TIGR01710 typeII_sec_gspG gene 30.1 2.3E+02 0.0049 21.5 6.3 8 11-18 15-22 (134)
167 COG5374 Uncharacterized conser 30.0 3.3E+02 0.0071 22.7 8.3 10 18-27 124-133 (192)
168 PF11460 DUF3007: Protein of u 30.0 2.4E+02 0.0053 21.2 6.8 16 62-77 85-101 (104)
169 PRK00404 tatB sec-independent 30.0 2.8E+02 0.0061 22.0 8.6 13 3-15 7-19 (141)
170 PF04420 CHD5: CHD5-like prote 29.6 1.3E+02 0.0029 23.8 5.0 18 63-80 67-84 (161)
171 PF10168 Nup88: Nuclear pore c 29.4 1.5E+02 0.0034 29.2 6.4 28 57-84 634-661 (717)
172 COG2959 HemX Uncharacterized e 29.4 4.6E+02 0.01 24.2 9.3 34 6-40 39-72 (391)
173 smart00786 SHR3_chaperone ER m 29.3 81 0.0018 26.4 3.8 28 13-42 143-170 (196)
174 PF09753 Use1: Membrane fusion 29.3 3.4E+02 0.0074 22.7 9.6 19 86-104 229-247 (251)
175 KOG1029|consensus 29.2 1.4E+02 0.003 30.4 5.9 13 34-46 367-379 (1118)
176 cd07591 BAR_Rvs161p The Bin/Am 29.0 88 0.0019 26.2 4.1 16 64-79 153-168 (224)
177 PRK00523 hypothetical protein; 29.0 2.1E+02 0.0046 20.2 7.5 14 59-72 56-69 (72)
178 cd07588 BAR_Amphiphysin The Bi 28.8 1.1E+02 0.0024 25.5 4.7 20 60-79 144-163 (211)
179 PF08182 Pedibin: Pedibin/Hym- 28.8 1.4E+02 0.003 18.2 3.8 31 36-73 2-32 (35)
180 PRK01622 OxaA-like protein pre 28.7 3.7E+02 0.008 22.9 12.3 38 83-120 132-170 (256)
181 PF04912 Dynamitin: Dynamitin 28.5 93 0.002 28.0 4.4 19 31-49 94-112 (388)
182 PF03978 Borrelia_REV: Borreli 28.5 2.5E+02 0.0054 22.8 6.3 22 29-50 45-66 (160)
183 PHA03072 putative viral membra 28.3 1.7E+02 0.0037 24.3 5.4 27 11-37 34-60 (190)
184 cd07667 BAR_SNX30 The Bin/Amph 28.2 3.7E+02 0.008 23.1 7.8 18 29-46 172-189 (240)
185 PF12644 DUF3782: Protein of u 28.0 1.8E+02 0.0038 19.0 7.6 59 31-91 1-59 (64)
186 PF06695 Sm_multidrug_ex: Puta 27.8 2.7E+02 0.0058 21.0 7.7 6 61-66 66-71 (121)
187 COG1377 FlhB Flagellar biosynt 27.6 2.4E+02 0.0053 25.7 6.9 48 6-53 190-237 (363)
188 KOG3850|consensus 27.6 1.6E+02 0.0034 27.4 5.6 14 30-43 280-293 (455)
189 PF06790 UPF0259: Uncharacteri 27.2 1.2E+02 0.0026 26.1 4.7 34 5-38 20-53 (248)
190 PF04880 NUDE_C: NUDE protein, 27.1 90 0.002 25.3 3.7 19 60-78 29-47 (166)
191 PRK09343 prefoldin subunit bet 26.8 2.3E+02 0.0049 21.4 5.7 19 61-79 91-109 (121)
192 PF07851 TMPIT: TMPIT-like pro 26.8 2.3E+02 0.005 25.5 6.5 20 60-79 66-85 (330)
193 PF11221 Med21: Subunit 21 of 26.6 2.3E+02 0.005 21.9 5.9 23 57-79 99-121 (144)
194 COG4178 ABC-type uncharacteriz 26.3 4.3E+02 0.0094 25.8 8.7 31 130-160 333-363 (604)
195 PF03356 Pox_LP_H2: Viral late 26.2 3.1E+02 0.0067 22.7 6.6 33 11-43 34-68 (189)
196 PF05382 Amidase_5: Bacterioph 26.1 53 0.0011 26.0 2.1 22 129-150 24-45 (145)
197 PRK10780 periplasmic chaperone 26.0 3.2E+02 0.007 21.4 7.9 20 23-43 32-51 (165)
198 KOG1760|consensus 25.8 2.6E+02 0.0057 21.9 5.8 21 60-80 93-113 (131)
199 PF10498 IFT57: Intra-flagella 25.8 2.5E+02 0.0054 25.4 6.7 14 33-46 275-288 (359)
200 PRK14127 cell division protein 25.7 3E+02 0.0064 20.8 6.4 19 61-79 50-68 (109)
201 PF05278 PEARLI-4: Arabidopsis 25.7 3E+02 0.0066 24.1 6.9 26 60-85 219-244 (269)
202 PRK15376 pathogenicity island 25.3 3.9E+02 0.0084 25.8 7.8 92 24-118 161-257 (670)
203 COG3404 Methenyl tetrahydrofol 25.1 4.2E+02 0.0091 22.4 8.4 40 9-50 30-69 (208)
204 cd07611 BAR_Amphiphysin_I_II T 25.1 1E+02 0.0022 25.9 3.8 20 60-79 137-163 (211)
205 PF11853 DUF3373: Protein of u 25.1 1.2E+02 0.0026 28.8 4.5 11 33-43 33-43 (489)
206 TIGR02976 phageshock_pspB phag 24.9 2.5E+02 0.0055 19.7 5.2 18 10-27 7-24 (75)
207 COG1382 GimC Prefoldin, chaper 24.8 2.8E+02 0.0061 21.4 5.8 17 29-45 28-44 (119)
208 PTZ00332 paraflagellar rod pro 24.7 4.6E+02 0.01 25.3 8.2 29 59-87 442-472 (589)
209 PF15188 CCDC-167: Coiled-coil 24.6 2.8E+02 0.006 20.1 7.8 31 63-97 51-81 (85)
210 KOG3088|consensus 24.2 1.5E+02 0.0032 26.5 4.7 22 86-107 136-160 (313)
211 PF00816 Histone_HNS: H-NS his 23.9 1.8E+02 0.004 20.5 4.5 16 60-75 22-37 (93)
212 PF14584 DUF4446: Protein of u 23.9 2.9E+02 0.0062 21.9 6.0 16 63-78 61-76 (151)
213 TIGR01477 RIFIN variant surfac 23.9 1.5E+02 0.0033 27.0 4.8 16 28-43 54-70 (353)
214 TIGR03592 yidC_oxa1_cterm memb 23.9 3.7E+02 0.0081 21.3 10.9 78 9-97 4-81 (181)
215 PF08058 NPCC: Nuclear pore co 23.8 56 0.0012 25.7 1.9 23 154-177 118-140 (144)
216 PTZ00370 STEVOR; Provisional 23.7 48 0.001 29.4 1.6 9 64-72 104-112 (296)
217 PLN03086 PRLI-interacting fact 23.4 2.3E+02 0.0051 27.4 6.2 12 61-72 50-61 (567)
218 KOG1161|consensus 23.4 4.6E+02 0.0099 23.5 7.6 60 30-93 65-125 (310)
219 COG0819 TenA Putative transcri 23.3 1.9E+02 0.004 24.4 5.0 29 23-51 160-188 (218)
220 cd00927 Cyt_c_Oxidase_VIc Cyto 23.2 2.7E+02 0.0058 19.5 5.0 25 6-30 16-40 (70)
221 COG1291 MotA Flagellar motor c 23.1 3.7E+02 0.0081 23.5 6.9 33 9-43 183-215 (266)
222 COG0576 GrpE Molecular chapero 23.0 3.2E+02 0.007 22.4 6.3 78 29-113 55-140 (193)
223 COG4026 Uncharacterized protei 22.8 3.6E+02 0.0078 23.4 6.6 48 30-80 134-181 (290)
224 PF11500 Cut12: Spindle pole b 22.8 4E+02 0.0088 21.3 6.7 15 30-44 72-90 (152)
225 cd04766 HTH_HspR Helix-Turn-He 22.8 2.7E+02 0.006 19.4 5.9 20 60-79 70-89 (91)
226 PF10498 IFT57: Intra-flagella 22.7 5.4E+02 0.012 23.2 8.2 21 59-79 332-352 (359)
227 TIGR03166 alt_F1F0_F1_eps alte 22.7 1.9E+02 0.004 22.0 4.5 37 29-71 82-118 (122)
228 COG5415 Predicted integral mem 22.6 5E+02 0.011 22.3 8.8 47 32-82 104-150 (251)
229 KOG3771|consensus 22.5 2.7E+02 0.0059 26.2 6.3 21 59-79 161-181 (460)
230 COG3750 Uncharacterized protei 22.4 1E+02 0.0023 22.3 2.8 18 62-79 21-38 (85)
231 PRK00226 greA transcription el 22.4 2.7E+02 0.0059 21.7 5.6 53 29-82 8-74 (157)
232 COG3879 Uncharacterized protei 22.3 2.4E+02 0.0052 24.4 5.6 45 30-80 63-107 (247)
233 TIGR02338 gimC_beta prefoldin, 22.2 3.2E+02 0.007 20.0 5.7 20 60-79 86-105 (110)
234 PTZ00370 STEVOR; Provisional 22.1 90 0.002 27.7 3.0 8 64-71 112-119 (296)
235 PF09604 Potass_KdpF: F subuni 22.0 1E+02 0.0023 17.3 2.2 16 17-33 10-25 (25)
236 PRK13454 F0F1 ATP synthase sub 22.0 4.2E+02 0.0091 21.2 9.5 17 11-27 37-53 (181)
237 KOG3366|consensus 21.8 3.1E+02 0.0066 22.5 5.8 17 59-75 109-125 (172)
238 PF04350 PilO: Pilus assembly 21.7 1.1E+02 0.0024 22.7 3.1 18 62-79 23-40 (144)
239 PF09889 DUF2116: Uncharacteri 21.7 2.6E+02 0.0057 18.8 5.2 10 60-69 24-33 (59)
240 PLN03229 acetyl-coenzyme A car 21.7 1.9E+02 0.0042 28.9 5.4 45 30-74 648-707 (762)
241 PRK15396 murein lipoprotein; P 21.6 3.1E+02 0.0066 19.5 7.4 13 31-43 25-37 (78)
242 COG3105 Uncharacterized protei 21.5 3.4E+02 0.0073 21.5 5.7 35 9-43 11-46 (138)
243 PF15086 UPF0542: Uncharacteri 21.5 3.1E+02 0.0067 19.5 6.8 11 17-27 35-45 (74)
244 PF07971 Glyco_hydro_92: Glyco 21.4 52 0.0011 31.1 1.5 25 125-151 401-426 (502)
245 PRK05886 yajC preprotein trans 21.3 2.1E+02 0.0046 21.6 4.5 24 23-48 17-40 (109)
246 PF10319 7TM_GPCR_Srj: Serpent 21.3 5.7E+02 0.012 22.8 7.9 37 78-114 248-293 (310)
247 KOG4571|consensus 21.2 4.3E+02 0.0093 23.5 7.0 21 62-82 262-282 (294)
248 PF13019 Telomere_Sde2: Telome 21.0 1.4E+02 0.003 24.2 3.6 11 61-71 150-160 (162)
249 KOG4403|consensus 21.0 3.6E+02 0.0078 25.7 6.7 20 62-81 309-328 (575)
250 PRK06330 transcript cleavage f 21.0 2.8E+02 0.006 27.7 6.3 56 25-82 567-636 (718)
251 KOG2357|consensus 20.9 2E+02 0.0043 26.9 5.0 14 14-27 347-360 (440)
252 PTZ00200 cysteine proteinase; 20.9 57 0.0012 30.3 1.6 38 7-44 47-84 (448)
253 PF00261 Tropomyosin: Tropomyo 20.8 4.9E+02 0.011 21.6 7.1 45 32-79 2-46 (237)
254 PRK14720 transcript cleavage f 20.8 2.8E+02 0.0061 28.4 6.5 53 29-82 753-819 (906)
255 PF07851 TMPIT: TMPIT-like pro 20.7 3.5E+02 0.0075 24.4 6.4 23 137-160 156-178 (330)
256 PRK02463 OxaA-like protein pre 20.6 5.9E+02 0.013 22.4 8.0 26 73-98 118-151 (307)
257 KOG1532|consensus 20.6 59 0.0013 29.2 1.5 9 70-78 292-300 (366)
258 PF15330 SIT: SHP2-interacting 20.5 1.4E+02 0.003 22.4 3.4 32 5-36 3-34 (107)
259 PF15619 Lebercilin: Ciliary p 20.3 4.1E+02 0.0089 21.8 6.4 27 23-49 4-30 (194)
260 PRK11778 putative inner membra 20.3 3.9E+02 0.0084 24.0 6.7 13 31-43 47-59 (330)
261 PRK09110 flagellar motor prote 20.3 3.3E+02 0.0072 23.8 6.1 33 9-43 202-234 (283)
262 PRK06228 F0F1 ATP synthase sub 20.2 3.8E+02 0.0083 20.6 5.9 37 29-71 85-121 (131)
No 1
>KOG3312|consensus
Probab=100.00 E-value=1.6e-66 Score=409.08 Aligned_cols=177 Identities=75% Similarity=1.192 Sum_probs=172.8
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH---HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHH
Q psy10293 1 MWADTLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ---MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKD 77 (179)
Q Consensus 1 ~~~d~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~---~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~ 77 (179)
||+|+++|++||++||+++|+++|+||||+++|++|++|++++ +|++|+..|++ .+|.++||+||.||++++.|||
T Consensus 4 m~aDtlliv~Is~cTAl~~EgitWvlvYRt~~Yk~LKa~vdK~sKKLE~~K~~~~~s-~~k~~kkKieR~Ee~LK~~nRD 82 (186)
T KOG3312|consen 4 MYADTLLIVFISFCTALLGEGITWVLVYRTDKYKRLKAEVDKQSKKLEKKKEENGDS-NDKSKKKKIERVEEKLKNNNRD 82 (186)
T ss_pred cccceeeeeHHHHHHHHHhCCceEEEEEehhHHHHHHHHHHHHHHHHHHHhhhcccc-hhhHHHHHHHHHHHHHhccccc
Confidence 7999999999999999999999999999999999999999998 89999988887 7889999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHh
Q psy10293 78 LTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKML 157 (179)
Q Consensus 78 l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlL 157 (179)
|+++|||+|+++++.+.++++++|+.|+|+|||||||.|+.++++++||||.|+|.||||++|+|+||+|++||||||+|
T Consensus 83 lSl~kmKsmfaigl~ftal~~~fNSiFeGrVVAkLPF~Pis~iqglSHRnL~GdD~TDCSfiFLYiLCtmsiRqNlQK~L 162 (186)
T KOG3312|consen 83 LSLFKMKSMFAIGLAFTALLGMFNSIFEGRVVAKLPFTPISIIQGLSHRNLKGDDMTDCSFIFLYILCTMSIRQNLQKIL 162 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhcceeEEecCCcchHHHhcccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhcCCCCCCCCCC
Q psy10293 158 GFAPSRTAAKQGGGMFGTQPK 178 (179)
Q Consensus 158 g~~~s~~~~~~~~~~~~~~~~ 178 (179)
|++|||+|++|++|+|+|||+
T Consensus 163 GfaPsRaaa~q~~~~~~P~p~ 183 (186)
T KOG3312|consen 163 GFAPSRAAAKQGGGFPGPPPS 183 (186)
T ss_pred CcCCchhHhhcCCCCCCCCCc
Confidence 999999999999999988874
No 2
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=100.00 E-value=3e-41 Score=269.81 Aligned_cols=153 Identities=31% Similarity=0.482 Sum_probs=138.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 4 DTLLIVFISVCTALLSEGLTWLLVYRT-EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 4 d~l~I~~~a~~t~l~se~ls~~Lvyr~-e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-+++|+++|+++++++|+++|.+|||+ +++++.++++++..+++++. .+..+.+|+|+.|+++.+.+.++++.+
T Consensus 15 ~~i~v~~~~~~~~~~s~l~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~ 89 (168)
T PF01956_consen 15 ITIVVFLIAILRGLISELLQKFLIDRKMDKYQKRMKEFQKRYRELRKN-----GDFKKPKKLEKRQMELMEKQQEMMMMM 89 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHc-----CCccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999887 66666666666655555552 245678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCC
Q psy10293 83 MKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAP 161 (179)
Q Consensus 83 ~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~ 161 (179)
||||++++++++++|+|++++|+|.+|+|+||+|+.+|+.++|||+++.|++||||++|||||+||+|+++||+||.+|
T Consensus 90 mK~~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYfL~s~~~~~vi~k~lg~~n 168 (168)
T PF01956_consen 90 MKPMFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYFLCSFGLRQVIRKLLGENN 168 (168)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999986
No 3
>COG1422 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=219.81 Aligned_cols=152 Identities=22% Similarity=0.253 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhh
Q psy10293 5 TLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMK 84 (179)
Q Consensus 5 ~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k 84 (179)
.++|+++|++||+++++++++++ |.|+++++|+++++.+|+.+||+.+ .|.++-||+|+.|+|+...|+||+...||
T Consensus 47 ~lvilV~avi~gl~~~i~~~~li-D~ekm~~~qk~m~efq~e~~eA~~~--~d~~~lkkLq~~qmem~~~Q~elmk~qfk 123 (201)
T COG1422 47 HLVILVAAVITGLYITILQKLLI-DQEKMKELQKMMKEFQKEFREAQES--GDMKKLKKLQEKQMEMMDDQRELMKMQFK 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 47899999999999999999999 9999999999999999999998722 13345555555555666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCcccccc--cccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCCC
Q psy10293 85 SMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWV--QGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAPS 162 (179)
Q Consensus 85 ~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~--~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~s 162 (179)
||+++++++|++|+|+..+..+....+-|++.+.|. +.+.|.++.|+. .+|++||||||++++|++||.||++..
T Consensus 124 PM~~~~v~tI~~F~Wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~gWi~WYfLcS~~vs~ilrk~l~i~~~ 200 (201)
T COG1422 124 PMLYISVLTIPFFAWLRWFVGTGGYLVSEPNMALPTLFHILYHTAVFGDF---LGWIGWYFLCSFVVSQILRKVLNIAVF 200 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHccCcccccCccchhHHhhhhhhhccccccc---hHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 999999999999955555555557777777666554 777899998887 899999999999999999999999864
No 4
>KOG3188|consensus
Probab=99.70 E-value=1.3e-16 Score=132.07 Aligned_cols=85 Identities=22% Similarity=0.244 Sum_probs=79.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCC--CCCchhHHHHHHHHHhhhHHHHH
Q psy10293 77 DLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGE--DYTDCSFIFLYILCTMSIRQNIQ 154 (179)
Q Consensus 77 ~l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~--d~td~s~i~wYfLcsm~~r~~iq 154 (179)
.+.|.+||.++...+|.+++++|+|.+|+|++..|+||+.+..|+.|.|||++.. |+.|+|+++|||||-+|+|.++.
T Consensus 106 smlmdmmKgNm~~viPqtii~~WiN~fFSGFv~~kvPFPLTlrFK~MlQ~Gi~l~~LDv~wVSS~SWYFLnvfGLrsiys 185 (246)
T KOG3188|consen 106 SMLMDMMKGNMANVIPQTIIGGWINWFFSGFVTTKVPFPLTLRFKSMLQRGIDLQDLDVSWVSSASWYFLNVFGLRSIYS 185 (246)
T ss_pred HHHHHHHhhhHHHHhHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHcCchhhhcchhHhhhhHHHHHHHhhhHHHHH
Confidence 3567889999999999999999999999999999999999999999999999865 66899999999999999999999
Q ss_pred HHhCCCC
Q psy10293 155 KMLGFAP 161 (179)
Q Consensus 155 KlLg~~~ 161 (179)
.+||.++
T Consensus 186 LiLG~~N 192 (246)
T KOG3188|consen 186 LILGEEN 192 (246)
T ss_pred HHhcccc
Confidence 9999776
No 5
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=98.03 E-value=1e-05 Score=64.86 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh-hhhhhc-hhHHHHHHHHHHHHHHhhHHHHHHhh----hHHHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAI-ESTLLD-KNVKKKIEREEERLKNNNKDLTMVKM----KSMFAIGFAFTALLSMFNT 102 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~-~~~~~~-k~~~kkler~e~~l~~~~~~l~~~k~----k~m~~~~l~~i~if~l~~~ 102 (179)
..++++++++|+++..+++.... .|+.-. -+.++|++++++|+++++++....+. .-..+..+.+.+.+..+..
T Consensus 38 ~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 117 (161)
T PF04420_consen 38 SSKEQRQLRKEILQLKRELNAISAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKVLWVLTTLPFFVLRF 117 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH--------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhe
Confidence 45677777777777766554421 111100 15778899999999999988886552 2233344455555557777
Q ss_pred hhccccccccCCccc-ccccccc--cCCCCCCCCCchhHHHHHHHHH
Q psy10293 103 IFDGKIVAKLPFTPI-SWVQGLS--HRNLSGEDYTDCSFIFLYILCT 146 (179)
Q Consensus 103 ~f~g~~VaklPF~pi-~~~~~~~--~rgL~g~d~td~s~i~wYfLcs 146 (179)
||-..+|..+|-.-+ .|++.+. -++..| .+|-.+|=+.|+
T Consensus 118 ~~rk~pV~~lp~~~~p~p~~~lLSfP~~~~g----aVsi~~W~~ac~ 160 (161)
T PF04420_consen 118 WYRKTPVFYLPKGWFPWPFEWLLSFPTAPLG----AVSITVWLFACN 160 (161)
T ss_dssp -----------------------------------------------
T ss_pred eecCceEEEECchhhHHHHHHheecccCCCC----ceehHHHHHHhc
Confidence 888779999995555 5665554 344334 478899988885
No 6
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=96.84 E-value=0.05 Score=49.01 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hh
Q psy10293 7 LIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KM 83 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~ 83 (179)
.|+++.+++=++.--+++.-.-.+++++++|-|+++.+||.|+.+ ++.+..++.++++.++.+|-... -+
T Consensus 136 aII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~-------~d~~~~~k~q~e~~~Lykk~ginP~~gc 208 (357)
T PRK02201 136 AIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYK-------KDKQMKQRKQQEIQELYKKHNISPFSPF 208 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhccc-------CCHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 344444444444444455555567788888888888877776532 33444555666666666655522 25
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q psy10293 84 KSMFAIGFAFTALLSMFNT 102 (179)
Q Consensus 84 k~m~~~~l~~i~if~l~~~ 102 (179)
-|+++-+.+++++|..+.+
T Consensus 209 lP~LiQ~Pif~aly~vl~~ 227 (357)
T PRK02201 209 VQMFVTLPIFIAVYRVVQS 227 (357)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666666666666655553
No 7
>COG1422 Predicted membrane protein [Function unknown]
Probab=95.89 E-value=0.24 Score=41.37 Aligned_cols=81 Identities=15% Similarity=0.080 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhh--hhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH
Q psy10293 13 VCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIE--STLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIG 90 (179)
Q Consensus 13 ~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~--~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~ 90 (179)
+++|.+..+..-++=|..-++ ++|++.+|++||-+. .+..+++|++|+||+|++.+++.++ ....||-.+==|
T Consensus 51 lV~avi~gl~~~i~~~~liD~----ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~-Q~elmk~qfkPM 125 (201)
T COG1422 51 LVAAVITGLYITILQKLLIDQ----EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDD-QRELMKMQFKPM 125 (201)
T ss_pred HHHHHHHHHHHHHHHHHhccH----HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHHhhhhH
Confidence 344555555555554444333 555566666655442 3336667999999988888866544 333466666666
Q ss_pred HHHHHHHH
Q psy10293 91 FAFTALLS 98 (179)
Q Consensus 91 l~~i~if~ 98 (179)
+.++++.-
T Consensus 126 ~~~~v~tI 133 (201)
T COG1422 126 LYISVLTI 133 (201)
T ss_pred HHHHHHHH
Confidence 65555553
No 8
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=95.12 E-value=0.32 Score=38.60 Aligned_cols=133 Identities=14% Similarity=0.017 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHH
Q psy10293 10 FISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAI 89 (179)
Q Consensus 10 ~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~ 89 (179)
++-+++|+++.+++-++=+.. -+++ .++.++..++.+++. ..+.++++.++.++.|++-+.+.++-.-. ++.++=-
T Consensus 17 i~v~~~~~~~~~~s~l~~~~~-i~~~-~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~mK~ 92 (168)
T PF01956_consen 17 IVVFLIAILRGLISELLQKFL-IDRK-MDKYQKRMKEFQKRY-RELRKNGDFKKPKKLEKRQMELMEKQQEM-MMMMMKP 92 (168)
T ss_pred HHHHHHHHHHHHHHHHHhccc-cccc-cHHHHHHHHHHHHHH-HHHHHcCCccCHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455666666666666664222 2233 222222211111111 11133345566666666555555433333 5566666
Q ss_pred HHHHHHHHHHHHHhhccccccccC-CcccccccccccCCCCCCCCCchhHHHHHHHHH
Q psy10293 90 GFAFTALLSMFNTIFDGKIVAKLP-FTPISWVQGLSHRNLSGEDYTDCSFIFLYILCT 146 (179)
Q Consensus 90 ~l~~i~if~l~~~~f~g~~VaklP-F~pi~~~~~~~~rgL~g~d~td~s~i~wYfLcs 146 (179)
++.+++.+..+..|....--+..- --|+++.+.+..=---|-+..|.++.+|-+.-.
T Consensus 93 ~~~~~v~~i~i~~wi~~~f~g~vv~klPFpl~~~f~~~~qrgl~~~d~~~~s~i~wYf 150 (168)
T PF01956_consen 93 MFVTMVPQIPIFYWINYFFSGFVVAKLPFPLTGRFKSMLQRGLEGLDVSYVSSISWYF 150 (168)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcceEEeeccccHHHhHHhhcCCCCCcccHhHHHHHHH
Confidence 666666665666664443332211 124443344422222244555666666655443
No 9
>PRK01318 membrane protein insertase; Provisional
Probab=94.83 E-value=1.3 Score=41.84 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=51.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHHHHhhc
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKSMFAIGFAFTALLSMFNTIFD 105 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~m~~~~l~~i~if~l~~~~f~ 105 (179)
.+.+++++|-+|++.+||.|+ + + +|.+++++++-++-... -+-|+++-+.+++++|.++....+
T Consensus 348 s~~km~~lqP~~~~i~~kyk~-------d---~---~k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e 414 (521)
T PRK01318 348 SMAKMKVLQPKMQELKEKYKD-------D---P---QKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE 414 (521)
T ss_pred HHHHHHHhhHHHHHHHHHhHh-------h---H---HHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666555555433 1 1 23344445444443322 244555555556555555444332
Q ss_pred cccccccCCcccc-cccccccCCCCCCCCCchhHHHHHHHHHhhhHHHHHHHhCCCC
Q psy10293 106 GKIVAKLPFTPIS-WVQGLSHRNLSGEDYTDCSFIFLYILCTMSIRQNIQKMLGFAP 161 (179)
Q Consensus 106 g~~VaklPF~pi~-~~~~~~~rgL~g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~~ 161 (179)
+.-.|+. |++.++. +|++..= -+..+-.-+++.+.++.-++-.+
T Consensus 415 ------l~~~~fl~Wi~DLs~-----~Dp~~il-~~~~lPil~~~~~~~~~~l~~~~ 459 (521)
T PRK01318 415 ------LRHAPFIGWIHDLSA-----PDPYFIL-HIGLLPILMGITMFLQQKLNPTP 459 (521)
T ss_pred ------hccCchheeeccccc-----cccchhH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 2223443 6665543 4543211 11222233666777777777443
No 10
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=94.73 E-value=0.8 Score=36.98 Aligned_cols=43 Identities=26% Similarity=0.313 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293 7 LIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~ 49 (179)
.|++++++.=++.-=++..=.-+..+++++|-|+++.+||.|+
T Consensus 5 sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~ 47 (181)
T TIGR03592 5 AIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKD 47 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 3444444444443334444444555666666666666665553
No 11
>PRK01622 OxaA-like protein precursor; Validated
Probab=94.39 E-value=0.35 Score=41.44 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALL 97 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if 97 (179)
+++++++|-|+++.+||.|++. +.++-++.++++.++.+|-+..-++....-+++.+|+|
T Consensus 90 ~~km~~iqP~l~~iq~kyk~~~--------d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif 149 (256)
T PRK01622 90 QEKMAVMKPELDKIQAKLKVTK--------DLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPIL 149 (256)
T ss_pred HHHHHHhCHHHHHHHHHHhccC--------CHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHH
Confidence 3455556666666666654422 22233345556666666655433442333344444444
No 12
>PRK00145 putative inner membrane protein translocase component YidC; Provisional
Probab=94.20 E-value=2.9 Score=35.05 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=16.2
Q ss_pred HHHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q psy10293 66 REEERLKNNNKDLTMVK---MKSMFAIGFAFTALLSMFN 101 (179)
Q Consensus 66 r~e~~l~~~~~~l~~~k---~k~m~~~~l~~i~if~l~~ 101 (179)
|.++++.++.++-...- +-|+++-..+++.+|+.++
T Consensus 80 ~~~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~ 118 (223)
T PRK00145 80 KLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFN 118 (223)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555544222 3344444444444444443
No 13
>PRK02944 OxaA-like protein precursor; Validated
Probab=94.12 E-value=0.65 Score=39.80 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK---MKSMFAIGFAFTALLSMFN 101 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k---~k~m~~~~l~~i~if~l~~ 101 (179)
.+++++|-|+++.+||.++ ++.+.-+|.++++.++-++-...- +-|+++-+.+++++|..++
T Consensus 86 ~km~~iqPe~~~iq~kyk~---------~~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~ 150 (255)
T PRK02944 86 KAMQALQPEMQKLKEKYSS---------KDQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIM 150 (255)
T ss_pred HHHHHccHHHHHHHHHHcC---------CCHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444322 122334555666666666655322 4455555555555554443
No 14
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=93.52 E-value=0.64 Score=42.04 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=33.3
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH--HHhhhHHHHHHHHHHHHHH
Q psy10293 24 WLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT--MVKMKSMFAIGFAFTALLS 98 (179)
Q Consensus 24 ~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~--~~k~k~m~~~~l~~i~if~ 98 (179)
+.=.-.+.+++.+|-+|++.+++.++... +++ ++.++++.++-+|-. +.-.-|+++-+.+++++|.
T Consensus 47 ikQ~KS~~KM~~LQPemqkk~~eIqeKYK------dDp---qk~QqEmmkLYKE~GNPlaGCLP~LIQmPIF~aLY~ 114 (375)
T PRK02654 47 AGSIRNMRRMKIAQPVMQKRQAEIQERYK------NDP---QKQQEEMGKLMKEFGNPLAGCLPLLVQMPILFALFA 114 (375)
T ss_pred HHHHHHHHHHHHhCchhhhHHHHHHHHhc------CCH---HHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHH
Confidence 33333455666666777776777776431 111 233444555555554 1124455555555555554
No 15
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=93.29 E-value=2.6 Score=34.03 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccc
Q psy10293 85 SMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLS 124 (179)
Q Consensus 85 ~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~ 124 (179)
|.++-+.+++.+|..+.+.-. +..+.-..+.++..++
T Consensus 74 ~~liq~Pif~~~~~~lr~~~~---~~~~~~~g~lw~~dL~ 110 (198)
T PF02096_consen 74 PPLIQIPIFIGLFRALRRMAE---VPSLATGGFLWFPDLT 110 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---hcccccCceeChHhcC
Confidence 444444444444444444322 2222334555555543
No 16
>PRK01315 putative inner membrane protein translocase component YidC; Provisional
Probab=91.25 E-value=11 Score=33.82 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=21.8
Q ss_pred HHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHHH
Q psy10293 66 REEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFNT 102 (179)
Q Consensus 66 r~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~~ 102 (179)
+.+++++++.++-.. ..+-|+++-+.+++.+|..+++
T Consensus 91 ~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~ 130 (329)
T PRK01315 91 RMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDS 130 (329)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555442 2256777777777777776665
No 17
>PRK02463 OxaA-like protein precursor; Provisional
Probab=91.09 E-value=1.4 Score=38.99 Aligned_cols=62 Identities=21% Similarity=0.184 Sum_probs=34.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhh-----hHHHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKM-----KSMFAIGFAFTALLSM 99 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~-----k~m~~~~l~~i~if~l 99 (179)
+++++++|-|+++.+||.|++. + ++++ ++.++++.++.+|-....+ -|+++-+.+++++|..
T Consensus 90 ~~KM~~lqPe~~~Iq~Kyk~~~-----~--~~~~-~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~a 156 (307)
T PRK02463 90 SEKMAYLKPVFEPINERLKNAT-----T--QEEK-MAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFA 156 (307)
T ss_pred HHHHHHhChhHHHHHHHHhcCC-----C--hHHH-HHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHH
Confidence 5788888888888888877633 1 1222 2344556555555443323 3445555555555543
No 18
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=90.66 E-value=9.2 Score=35.47 Aligned_cols=65 Identities=14% Similarity=0.134 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhHHHHHHHHHHHHHHHHHHh
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKSMFAIGFAFTALLSMFNTI 103 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~m~~~~l~~i~if~l~~~~ 103 (179)
.+++.+|-++++.+++.|++. + .+..++.+++++++.++-+.. .+-|+++-+.+++++|..+.+.
T Consensus 59 ~km~~lqPel~~iq~kyk~~~-----d---~e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~m 126 (429)
T PRK00247 59 RTAAHIRPKRKALREEYKGKT-----D---EASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRM 126 (429)
T ss_pred HHHHHcCHHHHHHHHHHhcCC-----C---HHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566666666666665422 1 122233344556565555522 2556666666666666555553
No 19
>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]
Probab=90.25 E-value=2.8 Score=36.94 Aligned_cols=83 Identities=18% Similarity=0.198 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH---hhhH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV---KMKS 85 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~---k~k~ 85 (179)
+++-++.=++.--++..-...+++++++|-++++.+||.|. . | .++.++|++++-++-... ..-|
T Consensus 115 i~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~-~-----~------~~~~q~e~~~Lyk~~~vnPl~gclP 182 (314)
T COG0706 115 ILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKG-T-----D------KQKQQQEMMKLYKKHKVNPLAGCLP 182 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCC-C-----C------HHHHHHHHHHHHHHhCCCchhhHHH
Confidence 33333333333346666665678888888888888887774 0 1 123334666666665532 2457
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10293 86 MFAIGFAFTALLSMFNTI 103 (179)
Q Consensus 86 m~~~~l~~i~if~l~~~~ 103 (179)
+++.+.+++.+++.+.+.
T Consensus 183 ~liQ~Pifialy~~l~~~ 200 (314)
T COG0706 183 LLIQMPIFIALYYVLRST 200 (314)
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 777777777776555443
No 20
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=90.05 E-value=5.2 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.381 Sum_probs=14.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~ 50 (179)
.+++.++++++++..+.+.+.
T Consensus 2 ~dkl~~i~~~v~~v~~im~~N 22 (89)
T PF00957_consen 2 NDKLEQIQEQVEEVKNIMREN 22 (89)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 367778888887776555553
No 21
>PRK03449 putative inner membrane protein translocase component YidC; Provisional
Probab=89.99 E-value=4.8 Score=35.58 Aligned_cols=38 Identities=13% Similarity=0.183 Sum_probs=22.2
Q ss_pred HHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHHHh
Q psy10293 66 REEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFNTI 103 (179)
Q Consensus 66 r~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~~~ 103 (179)
+.++++.++.+|-+. ..+-|+++-+.+++++|..+.+.
T Consensus 81 ~~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~ 121 (304)
T PRK03449 81 KMALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSF 121 (304)
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555542 22566667777777777666553
No 22
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=87.73 E-value=8.8 Score=30.90 Aligned_cols=30 Identities=3% Similarity=-0.016 Sum_probs=15.6
Q ss_pred HHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293 67 EEERLKNNNKDLTMVKMKSMFAIGFAFTALL 97 (179)
Q Consensus 67 ~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if 97 (179)
.+++++++-+|-....+ +.+...++.+|+|
T Consensus 53 ~~~~~~~l~k~~~~~p~-~~~~~~liq~Pif 82 (198)
T PF02096_consen 53 MQQEMQKLYKKHGVNPL-KGCLPPLIQIPIF 82 (198)
T ss_pred HHHHHHHHHHHcCCCcH-HHHHHHHHHHHHH
Confidence 33344444444432223 4455667777777
No 23
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.52 E-value=8.3 Score=31.14 Aligned_cols=22 Identities=18% Similarity=0.471 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~~ 80 (179)
+.++++++++++++...+|+-.
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~ 179 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEA 179 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665555553
No 24
>PRK01001 putative inner membrane protein translocase component YidC; Provisional
Probab=86.73 E-value=7.3 Score=38.67 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH---HhhhHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM---VKMKSMFAIGFAFTALLSMFN 101 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~---~k~k~m~~~~l~~i~if~l~~ 101 (179)
.+|+++|-+|++.+||-|+ .-+|.|++++++-++-.. .-.-|+++-+.+++++|..+.
T Consensus 603 aKMq~LQPemqeIQeKYKd-------------D~qK~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~ 663 (795)
T PRK01001 603 RRMQKLSPYIQEIQQKYKK-------------EPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLK 663 (795)
T ss_pred HHHHHhhHHHHHHHHHhHh-------------HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555544433 113345556655555442 224465666666666665444
No 25
>KOG4253|consensus
Probab=86.15 E-value=7.7 Score=31.53 Aligned_cols=16 Identities=13% Similarity=-0.027 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHhhhHH
Q psy10293 136 CSFIFLYILCTMSIRQ 151 (179)
Q Consensus 136 ~s~i~wYfLcsm~~r~ 151 (179)
+|-..|-+.|.=.++.
T Consensus 154 VsltiW~~a~~kvi~g 169 (175)
T KOG4253|consen 154 VSLTIWVWALMKVING 169 (175)
T ss_pred cchhhhHHHHHHHHhh
Confidence 6888888888765544
No 26
>PRK11546 zraP zinc resistance protein; Provisional
Probab=85.38 E-value=14 Score=29.34 Aligned_cols=76 Identities=11% Similarity=0.067 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------hhccHHHHHHHHH-------HHHHHHHHHHHh----hhhhhchhH
Q psy10293 6 LLIVFISVCTALLSEGLTWLL--------------VYRTEKYQKLKTE-------IEKQMEKKKEAI----ESTLLDKNV 60 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~~L--------------vyr~e~~~~l~~e-------~~~~~ek~k~~~----~~~~~~k~~ 60 (179)
++++.+|+++.+-+-.+.|.- + ..|+..++++= +.++.+++.+.. .-..+++.|
T Consensus 9 ~~~~ala~~~~~s~~a~A~~~~G~~~G~~~~~~~~L-T~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD 87 (143)
T PRK11546 9 LVLMALSALAMGSGSAFAHHHWGGGHGMWQQNAAPL-TTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPD 87 (143)
T ss_pred HHHHHHHHHHHhhhHHHHhhccCCCCCCCccccccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 556677777777777776641 2 56666555432 222222222111 011135578
Q ss_pred HHHHHHHHHHHHHhhHHHHHHh
Q psy10293 61 KKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 61 ~kkler~e~~l~~~~~~l~~~k 82 (179)
.+|+.++..|+.+++.+|.--+
T Consensus 88 ~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 88 SSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999888544
No 27
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=85.00 E-value=1 Score=32.48 Aligned_cols=46 Identities=24% Similarity=0.449 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy10293 8 IVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIES 53 (179)
Q Consensus 8 I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~ 53 (179)
+.++|++++++...+-|.+||+.=+=.+-|.++++..+|..+...+
T Consensus 7 ~~iialiv~~iiaIvvW~iv~ieYrk~~rqrkId~li~RIreraED 52 (81)
T PF00558_consen 7 LAIIALIVALIIAIVVWTIVYIEYRKIKRQRKIDRLIERIRERAED 52 (81)
T ss_dssp -HHHHHHHHHHHHHHHHHHH------------CHHHHHHHHCTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccccc
Confidence 3445666677778889999988644445567888888888775533
No 28
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=84.74 E-value=7.2 Score=29.08 Aligned_cols=29 Identities=14% Similarity=0.334 Sum_probs=17.7
Q ss_pred HHHHHHhhccH---HHHHHHHHHHHHHHHHHH
Q psy10293 21 GLTWLLVYRTE---KYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 21 ~ls~~Lvyr~e---~~~~l~~e~~~~~ek~k~ 49 (179)
.++|.+++-.. .|.+++++++.+.++.++
T Consensus 14 ~l~y~l~~g~~G~~~~~~l~~q~~~~~~e~~~ 45 (105)
T PRK00888 14 WLQYSLWFGKNGILDYWRVNDQVAAQQQTNAK 45 (105)
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55666665444 677777777766444443
No 29
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.21 E-value=18 Score=26.85 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 14 CTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 14 ~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
+.+++--.++.-++ .++.+.++.+++++.-+|..+-.++ ...-...+.+.+++.++.+++-++.
T Consensus 19 ~~~~~~~~l~~~~a-~~~~~~~l~~~~~~~~~Rl~~lE~~-l~~LPt~~dv~~L~l~l~el~G~~~ 82 (106)
T PF10805_consen 19 AGGIFWLWLRRTYA-KREDIEKLEERLDEHDRRLQALETK-LEHLPTRDDVHDLQLELAELRGELK 82 (106)
T ss_pred HHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHhHHH
Confidence 34444444555556 6778888877777664444332211 0011233344444444554444444
No 30
>PF14282 FlxA: FlxA-like protein
Probab=82.13 E-value=6.9 Score=29.12 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh-hhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIE-STLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~-~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
+..++|+..++++.+++++-.. ++.+++.+.++.+.++.++..+..+|....
T Consensus 19 ~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 19 SQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888777776543 222344567788888899999999888543
No 31
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=82.01 E-value=4.6 Score=30.79 Aligned_cols=21 Identities=24% Similarity=0.453 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHHHHhhHHH
Q psy10293 58 KNVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 58 k~~~kkler~e~~l~~~~~~l 78 (179)
+|+.+|+.+.|.+|.+.+.+|
T Consensus 92 ~G~~~KI~K~~~KL~ea~~eL 112 (115)
T PF06476_consen 92 KGDSDKIAKRQKKLAEAKAEL 112 (115)
T ss_pred hCCHHHHHHHHHHHHHHHHHH
Confidence 366678888777787777776
No 32
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=81.56 E-value=5 Score=32.21 Aligned_cols=51 Identities=10% Similarity=0.138 Sum_probs=34.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh--hhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAI--ESTLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~--~~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+.++.++|. |+- +| ++++...+|.++..+.+.|...+
T Consensus 32 T~~G~~~L~~El~~L~~~i~~Ar~~GDl-sE--ak~~~~~~e~rI~~L~~~L~~A~ 84 (160)
T PRK06342 32 TEAGLKALEDQLAQARAAYEAAQAIEDV-NE--RRRQMARPLRDLRYLAARRRTAQ 84 (160)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCh-hH--HHHHHHHHHHHHHHHHHHHccCE
Confidence 57899999999999988887774 332 23 33344445557777776666433
No 33
>PRK04654 sec-independent translocase; Provisional
Probab=81.16 E-value=22 Score=30.06 Aligned_cols=71 Identities=18% Similarity=0.397 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHH-------HHHHHHHHHHHhhccHHHHHHHHHHHHH--HHHHHHHhhhhhhchhHHHHHHHHHHHHH
Q psy10293 2 WADTLLIVFISVCT-------ALLSEGLTWLLVYRTEKYQKLKTEIEKQ--MEKKKEAIESTLLDKNVKKKIEREEERLK 72 (179)
Q Consensus 2 ~~d~l~I~~~a~~t-------~l~se~ls~~Lvyr~e~~~~l~~e~~~~--~ek~k~~~~~~~~~k~~~kkler~e~~l~ 72 (179)
+.++++|++++++. .+.-++-.|+--.|+ .++..++++++. .+++++.. + +-+..++..+.+++
T Consensus 6 ~~ELLlI~VVALlV~GPerLPe~aRtlGk~irk~R~-~~~~vk~El~~El~~~ELrk~l-----~-~~~~~i~~~~~~lk 78 (214)
T PRK04654 6 VGELTLIAVVALVVLGPERLPKAARFAGLWVRRARM-QWDSVKQELERELEAEELKRSL-----Q-DVQASLREAEDQLR 78 (214)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH-----H-HHHHHHHHHHHHHH
Confidence 34778888888765 345555555554443 456666666555 33333322 1 12334666666666
Q ss_pred HhhHHHH
Q psy10293 73 NNNKDLT 79 (179)
Q Consensus 73 ~~~~~l~ 79 (179)
+..+++-
T Consensus 79 ~~~~el~ 85 (214)
T PRK04654 79 NTQQQVE 85 (214)
T ss_pred HHHHHHH
Confidence 6666665
No 34
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=78.55 E-value=28 Score=26.80 Aligned_cols=35 Identities=11% Similarity=0.193 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH
Q psy10293 8 IVFISVCTALLSEGLTWLLVY--RTEKYQKLKTEIEK 42 (179)
Q Consensus 8 I~~~a~~t~l~se~ls~~Lvy--r~e~~~~l~~e~~~ 42 (179)
-+.++++.++++.+.++++.+ |++-+.++.+...+
T Consensus 70 g~~~~~ia~li~~v~~~i~~~~IdP~~~~~~~~~~~~ 106 (163)
T PF13858_consen 70 GFLISLIAGLISAVFQYIYFNYIDPDFFENYIEAQIE 106 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence 345566666666666655431 66555555555433
No 35
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=77.11 E-value=14 Score=24.56 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q psy10293 7 LIVFISVCTALL 18 (179)
Q Consensus 7 ~I~~~a~~t~l~ 18 (179)
++++++++.|++
T Consensus 22 l~il~~f~~G~l 33 (68)
T PF06305_consen 22 LLILIAFLLGAL 33 (68)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 36
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=75.55 E-value=25 Score=24.70 Aligned_cols=61 Identities=13% Similarity=0.287 Sum_probs=35.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIF 104 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~~~~f 104 (179)
++++|+++++++++.-||..-+. .+-.|| .=+..+||++.. =.++++++...++..+++.|
T Consensus 10 ~~~~~~~i~~rLd~iEeKvEf~~---------~Ei~Qr---~GkkiGRDiGIl---YG~v~Glii~~~~~~l~~~~ 70 (70)
T PF04210_consen 10 DPDDFNEIMKRLDEIEEKVEFTN---------AEIAQR---AGKKIGRDIGIL---YGLVIGLIIFIIYIVLSSMF 70 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHhHH---------HHHHHH---HhHHhhhHHHHH---HHHHHHHHHHHHHHHHHHhC
Confidence 78888888888877433333222 112222 233456777742 56677777766666665543
No 37
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.77 E-value=23 Score=30.84 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 13 VCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 13 ~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
+.+.+..+.++-...-...+|..++++..+.
T Consensus 20 ~~t~V~a~~~~~~i~~~ds~l~~~~~~~~~~ 50 (265)
T COG3883 20 FLTTVFAALLSDKIQNQDSKLSELQKEKKNI 50 (265)
T ss_pred hcchhhhhhhhhHHHhhHHHHHHHHHHHHHH
Confidence 4455555666665553445566666554444
No 38
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=74.51 E-value=36 Score=27.35 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q psy10293 60 VKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l 78 (179)
-++++++.|.+++++.+|.
T Consensus 166 lk~el~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 166 LKKELEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555666555554
No 39
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=72.91 E-value=46 Score=26.47 Aligned_cols=12 Identities=33% Similarity=0.426 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHH
Q psy10293 32 KYQKLKTEIEKQ 43 (179)
Q Consensus 32 ~~~~l~~e~~~~ 43 (179)
+++|++.+-++.
T Consensus 24 kl~kl~r~Y~~l 35 (151)
T PF14584_consen 24 KLRKLKRRYDAL 35 (151)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
No 40
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=72.58 E-value=28 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
+++++|.+.=.+--+|. -+++=+++++++.+..++.++.
T Consensus 3 ~g~l~Ga~~Ga~~glL~-aP~sG~e~R~~l~~~~~~~~~~ 41 (74)
T PF12732_consen 3 LGFLAGAAAGAAAGLLF-APKSGKETREKLKDKAEDLKDK 41 (74)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHHHHHHH
Confidence 44455544444445555 6777777887777775555543
No 41
>PRK09609 hypothetical protein; Provisional
Probab=72.39 E-value=24 Score=31.46 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH
Q psy10293 14 CTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEK 46 (179)
Q Consensus 14 ~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek 46 (179)
+.+++-..+.+.+. ++-+-+++.++++.+.++
T Consensus 96 f~~~~fk~~~~~f~-~~~~~~~~~~~i~~~~~~ 127 (312)
T PRK09609 96 VGWFFFKFGKKFFG-KESRIKRYDNKIFKQKEQ 127 (312)
T ss_pred HHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHH
Confidence 33344455555555 555666666766554443
No 42
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=70.46 E-value=21 Score=29.53 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy10293 33 YQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 33 ~~~l~~e~~~~~ek~k~~~ 51 (179)
..+.|++++....|++|+.
T Consensus 78 v~~rqEa~eaAR~RmQEE~ 96 (190)
T PF06936_consen 78 VVRRQEAMEAARRRMQEEL 96 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455543
No 43
>PRK11020 hypothetical protein; Provisional
Probab=70.05 E-value=22 Score=27.37 Aligned_cols=46 Identities=13% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
..++|.+++++..-++.++. .|++...+-+.+.+.+.++.++...|
T Consensus 6 Eiq~L~drLD~~~~Klaaa~-----~rgd~~~i~qf~~E~~~l~k~I~~lk 51 (118)
T PRK11020 6 EIKRLSDRLDAIRHKLAAAS-----LRGDAEKYAQFEKEKATLEAEIARLK 51 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555444444433 45677777777777777777777655
No 44
>COG4920 Predicted membrane protein [Function unknown]
Probab=69.93 E-value=31 Score=29.45 Aligned_cols=18 Identities=28% Similarity=0.325 Sum_probs=9.2
Q ss_pred HHHHHHHhhccHHHHHHH
Q psy10293 20 EGLTWLLVYRTEKYQKLK 37 (179)
Q Consensus 20 e~ls~~Lvyr~e~~~~l~ 37 (179)
-++|-...-|+..|-+-+
T Consensus 43 ~glsiVm~~RSnp~l~~~ 60 (249)
T COG4920 43 FGLSIVMGLRSNPYLKGV 60 (249)
T ss_pred HHHHHHHhhccCcccccc
Confidence 345555554555555444
No 45
>KOG0981|consensus
Probab=68.67 E-value=15 Score=35.68 Aligned_cols=49 Identities=33% Similarity=0.392 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh------------hc----hhHHHHHHHHHHHHHHhhHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTL------------LD----KNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~------------~~----k~~~kkler~e~~l~~~~~~l~ 79 (179)
..+++|+++|++..|.++++..+-- .+ -+..++++|+++|++.+..|+.
T Consensus 636 ~smekl~~kI~~~keql~e~~~~l~~ak~~~~~~~~~~~~k~~Ek~~k~~~~l~eqi~kl~~q~~ 700 (759)
T KOG0981|consen 636 KSMEKLAEKIKAKKEQLKEAEAELKSAKADEKKQEGSKEKKEVEKKEKKLERLEEQLKKLEIQMT 700 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3577888888777555544321000 01 1466778999999998888776
No 46
>PF05992 SbmA_BacA: SbmA/BacA-like family; InterPro: IPR009248 The Rhizobium meliloti (Sinorhizobium meliloti) bacA gene encodes a function that is essential for bacterial differentiation into bacteroids within plant cells in the symbiosis between R. meliloti and alfalfa. An Escherichia coli homologue of BacA, SbmA, is implicated in the uptake of microcins and bleomycin. This family is likely to be a subfamily of the ABC transporter family.; GO: 0005215 transporter activity, 0006810 transport, 0009276 Gram-negative-bacterium-type cell wall, 0016021 integral to membrane
Probab=68.59 E-value=88 Score=28.00 Aligned_cols=74 Identities=16% Similarity=0.134 Sum_probs=45.0
Q ss_pred HHHHHHHHH---hhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccccccccCCCCCCCCCchhHHHH
Q psy10293 65 EREEERLKN---NNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWVQGLSHRNLSGEDYTDCSFIFL 141 (179)
Q Consensus 65 er~e~~l~~---~~~~l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~~~~~~rgL~g~d~td~s~i~w 141 (179)
||+||+-.. .-.+|+. ++-..+.|.+.++|+. |--+..|..+|+ ++.+ ..+++|
T Consensus 110 QRIQEDtmrfa~i~E~Lgv-~~i~simtliaFlPiL-----~~lS~~V~~lp~-----~g~i------------~~~Lv~ 166 (315)
T PF05992_consen 110 QRIQEDTMRFAKIMEDLGV-SFIRSIMTLIAFLPIL-----WELSSHVSELPF-----FGEI------------PHSLVW 166 (315)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-----HHHhccCCcCcc-----cCCC------------chHHHH
Confidence 566664433 3334443 3556677788888887 433445555553 1322 356788
Q ss_pred HHHHHhhhHHHHHHHhCCCC
Q psy10293 142 YILCTMSIRQNIQKMLGFAP 161 (179)
Q Consensus 142 YfLcsm~~r~~iqKlLg~~~ 161 (179)
+.++...+..++--+.|..-
T Consensus 167 ~ai~~s~~gt~~l~~vGikL 186 (315)
T PF05992_consen 167 AAIIWSLFGTILLAFVGIKL 186 (315)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 88888888887777777664
No 47
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=65.87 E-value=36 Score=22.48 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 6 LLIVFISVCTALLSEGLTW 24 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~ 24 (179)
++.++++++.|.+.....+
T Consensus 25 l~~f~~G~llg~l~~~~~~ 43 (68)
T PF06305_consen 25 LIAFLLGALLGWLLSLPSR 43 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444444
No 48
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=65.53 E-value=25 Score=27.92 Aligned_cols=52 Identities=21% Similarity=0.262 Sum_probs=32.2
Q ss_pred ccHHHHHHHHHHHHHHH-H-------HHHHh--hhhhhch----hHHHHHHHHHHHHHHhhHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQME-K-------KKEAI--ESTLLDK----NVKKKIEREEERLKNNNKDLTMV 81 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e-k-------~k~~~--~~~~~~k----~~~kkler~e~~l~~~~~~l~~~ 81 (179)
-.+.|++|++|++.+.. + ++++. |+- +|- ..+++..++|.++..+.+.|...
T Consensus 8 T~~g~~~L~~EL~~L~~~~r~e~~~~i~~Ar~~GDl-~ENaeY~aAk~~~~~~e~rI~~L~~~L~~A 73 (157)
T PRK01885 8 TREGYARLKQELDYLWREERPEVTQKVSWAASLGDR-SENADYIYGKKRLREIDRRVRFLTKRLENL 73 (157)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCc-chhhcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 57899999999988733 2 44442 321 222 24555566666777777777643
No 49
>PHA03049 IMV membrane protein; Provisional
Probab=65.50 E-value=8.5 Score=26.84 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.4
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q psy10293 1 MWADTLLIVFISVCTALLSEG 21 (179)
Q Consensus 1 ~~~d~l~I~~~a~~t~l~se~ 21 (179)
|++|.++++++.+++|++--+
T Consensus 1 MI~d~~l~iICVaIi~lIvYg 21 (68)
T PHA03049 1 MIGDIILVIICVVIIGLIVYG 21 (68)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 899999999988888887444
No 50
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=65.17 E-value=48 Score=23.72 Aligned_cols=61 Identities=15% Similarity=0.312 Sum_probs=35.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhh
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIF 104 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~~~~f 104 (179)
++++|+++++++++.-||..-+.+ +--|| .=+..+||++-. =.+++++++..+...++..|
T Consensus 13 ~~~d~~~i~~rLD~iEeKVEftn~---------Ei~Qr---~GkkvGRDiGIl---YG~viGlli~~i~~~~~~~~ 73 (77)
T PRK01026 13 DPKDFKEIQKRLDEIEEKVEFTNA---------EIFQR---IGKKVGRDIGIL---YGLVIGLLIVLVYIILSPIF 73 (77)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---HhHHhhhHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 778899998888875444443331 12222 234567788832 45666666666555544443
No 51
>PF10732 DUF2524: Protein of unknown function (DUF2524); InterPro: IPR019668 This entry represents proteins with unknown function, and appear to be restricted to the Bacillaceae.
Probab=64.42 E-value=40 Score=24.49 Aligned_cols=49 Identities=14% Similarity=0.354 Sum_probs=32.4
Q ss_pred hccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHH
Q psy10293 28 YRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 28 yr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l 78 (179)
|+...|.+-+.+++....++..-.-+. ...+.+.|.|.+.++..++.+|
T Consensus 34 ynd~eYt~Aq~~LE~a~neL~~l~~sA--N~qQREqL~R~rlQlqqLQN~M 82 (84)
T PF10732_consen 34 YNDEEYTEAQQMLEEAYNELEKLAHSA--NPQQREQLHRMRLQLQQLQNNM 82 (84)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHhhh
Confidence 677778888888877755544422111 2357778888888888777654
No 52
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=63.97 E-value=6.9 Score=27.34 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=16.8
Q ss_pred CcchHHHHHHHHHHHHHHHHH
Q psy10293 1 MWADTLLIVFISVCTALLSEG 21 (179)
Q Consensus 1 ~~~d~l~I~~~a~~t~l~se~ 21 (179)
|++|.++++++.+++|++--+
T Consensus 1 MI~d~iLi~ICVaii~lIlY~ 21 (68)
T PF05961_consen 1 MIGDFILIIICVAIIGLILYG 21 (68)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 889999999888888876433
No 53
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=63.21 E-value=60 Score=24.11 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=12.8
Q ss_pred HHHHHhhccHHHHHHHHHHHHH
Q psy10293 22 LTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 22 ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
+-..+.|-...+.+|+++.+.+
T Consensus 16 L~~~l~~qs~~i~~L~a~n~~q 37 (110)
T PF10828_consen 16 LGGWLWYQSQRIDRLRAENKAQ 37 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566677777766544
No 54
>KOG3385|consensus
Probab=62.84 E-value=56 Score=25.19 Aligned_cols=46 Identities=9% Similarity=0.143 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH--HHhhhH---------HHHHHHHHHHHHHHHHHh
Q psy10293 58 KNVKKKIEREEERLKNNNKDLT--MVKMKS---------MFAIGFAFTALLSMFNTI 103 (179)
Q Consensus 58 k~~~kkler~e~~l~~~~~~l~--~~k~k~---------m~~~~l~~i~if~l~~~~ 103 (179)
+.+.|-+++...++...+--|+ |.++|. +.|+++.+++.|.++-+|
T Consensus 60 ~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~ 116 (118)
T KOG3385|consen 60 RTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFSLVAFFILWVW 116 (118)
T ss_pred chHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhee
Confidence 4677888888888777666665 333443 456677776666444333
No 55
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=62.07 E-value=75 Score=27.28 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTE 39 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e 39 (179)
+++|++.|++..-.=-+.+|+.|-=+++.++
T Consensus 87 ~~lAvliaivIs~pl~l~iF~~eI~~~l~~~ 117 (301)
T PF14362_consen 87 LLLAVLIAIVISEPLELKIFEKEIDQKLDEI 117 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555544433334455576655555544
No 56
>KOG4403|consensus
Probab=61.48 E-value=44 Score=31.49 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Q psy10293 4 DTLLIVFISVCTALLSEGLTWLLVYRTEKYQK 35 (179)
Q Consensus 4 d~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~ 35 (179)
|.++++.+-+.+|.. |+ -|++.++.+
T Consensus 216 D~iLv~lili~v~gc-----w~-ay~Qnk~ak 241 (575)
T KOG4403|consen 216 DFILVVLILIGVGGC-----WF-AYRQNKKAK 241 (575)
T ss_pred hHHHHHHHHHHhhhh-----hh-hhhhhhHHH
Confidence 666666655555443 44 347766653
No 57
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=61.00 E-value=52 Score=22.66 Aligned_cols=10 Identities=30% Similarity=0.591 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy10293 33 YQKLKTEIEK 42 (179)
Q Consensus 33 ~~~l~~e~~~ 42 (179)
+..++.++++
T Consensus 26 ~~~~~~~~~~ 35 (85)
T TIGR02209 26 TRQLNNELQK 35 (85)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 58
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=60.86 E-value=36 Score=27.03 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhch----hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLDK----NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~k----~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+.. +++++. |+- +|- ..+++...+|.++..+.+.|...+
T Consensus 6 T~~G~~~L~~El~~L~~~~r~~~~~~i~~Ar~~GDl-sENaeY~aak~~~~~le~rI~~L~~~L~~A~ 72 (156)
T TIGR01461 6 TPEGYEKLKQELNYLWREERPEVTQKVTWAASLGDR-SENADYQYGKKRLREIDRRVRFLTKRLENLK 72 (156)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCCc-chhhhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 46899999999988732 224442 331 121 245555666667777777776543
No 59
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=60.40 E-value=94 Score=25.45 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=12.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Q psy10293 3 ADTLLIVFISVCTALLSEGLTWLLV 27 (179)
Q Consensus 3 ~d~l~I~~~a~~t~l~se~ls~~Lv 27 (179)
.|.+++.++..+.+.+.-..-|.=+
T Consensus 45 ~~~~I~f~i~t~~sayll~fAYkNv 69 (170)
T PF07074_consen 45 YDSLIVFVIVTLVSAYLLAFAYKNV 69 (170)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhH
Confidence 3555555555555444333334333
No 60
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=57.52 E-value=72 Score=23.25 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
++.++|++..++-|+.. +-++++.+.+++
T Consensus 7 v~~~~~v~~~i~~y~~~----k~~ka~~~~~kL 35 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWW----KVKKAKKQNAKL 35 (87)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 44555555566667666 445555555444
No 61
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=57.25 E-value=41 Score=32.16 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhcc
Q psy10293 62 KKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDG 106 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~~~~f~g 106 (179)
....++++....+ +.+.-|.-.++|+++.++++|..+++++.|
T Consensus 457 s~~srves~~~~L--k~s~pKanK~LWIsvAliVLLAaLlSfLtg 499 (538)
T PF05781_consen 457 SRYSRVESWASYL--KTSFPKANKVLWISVALIVLLAALLSFLTG 499 (538)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344555544332 223334558899999999999999999998
No 62
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=57.15 E-value=63 Score=24.39 Aligned_cols=13 Identities=31% Similarity=0.560 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q psy10293 60 VKKKIEREEERLK 72 (179)
Q Consensus 60 ~~kkler~e~~l~ 72 (179)
++.++|.++.+++
T Consensus 105 ~~~r~~~l~~~i~ 117 (118)
T PF08514_consen 105 NKSRLEELEQKIK 117 (118)
T ss_pred cHHHHHHHHHHhc
Confidence 3336777666554
No 63
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=56.28 E-value=86 Score=26.87 Aligned_cols=9 Identities=33% Similarity=0.342 Sum_probs=3.7
Q ss_pred HHhhccHHH
Q psy10293 25 LLVYRTEKY 33 (179)
Q Consensus 25 ~Lvyr~e~~ 33 (179)
-+.|+.++-
T Consensus 86 df~~~~~k~ 94 (230)
T PF03904_consen 86 DFIDKTEKV 94 (230)
T ss_pred HHHHHHHHH
Confidence 344444433
No 64
>PF14182 YgaB: YgaB-like protein
Probab=55.19 E-value=67 Score=23.11 Aligned_cols=45 Identities=22% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++.=.||+++++=++=-++- .+..++++++.+++++..+.++|..
T Consensus 14 D~LL~LQsElERCqeIE~eL-----~~l~~ea~l~~i~~EI~~mkk~Lk~ 58 (79)
T PF14182_consen 14 DKLLFLQSELERCQEIEKEL-----KELEREAELHSIQEEISQMKKELKE 58 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34445566665543322221 1224566788888888877777763
No 65
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=54.96 E-value=99 Score=24.02 Aligned_cols=8 Identities=25% Similarity=0.156 Sum_probs=3.3
Q ss_pred HHHHHHhh
Q psy10293 21 GLTWLLVY 28 (179)
Q Consensus 21 ~ls~~Lvy 28 (179)
++.|++.|
T Consensus 17 ~l~~~~~~ 24 (159)
T PRK09173 17 LVVYLKVP 24 (159)
T ss_pred HHHHHHhH
Confidence 34444343
No 66
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=54.43 E-value=20 Score=30.58 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10293 34 QKLKTEIEKQMEKKKE 49 (179)
Q Consensus 34 ~~l~~e~~~~~ek~k~ 49 (179)
++||.||++.++|..|
T Consensus 4 RKLQ~Eid~~lKkv~E 19 (233)
T PF04065_consen 4 RKLQQEIDRTLKKVQE 19 (233)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4677777777555443
No 67
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=54.36 E-value=72 Score=28.27 Aligned_cols=38 Identities=11% Similarity=0.224 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Q psy10293 64 IEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTI 103 (179)
Q Consensus 64 ler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~~~~ 103 (179)
.|..+..+++.++|-... .| ++...+....++.+|...
T Consensus 290 ~ee~~ldl~~I~~QslrL-~~-~~l~~~~~~~l~~iWsdl 327 (340)
T PF12794_consen 290 VEEPELDLEQISQQSLRL-LR-SILLLILLVGLYWIWSDL 327 (340)
T ss_pred cCCcccCHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 443333666666664421 33 333333344444466654
No 68
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=54.15 E-value=72 Score=22.23 Aligned_cols=51 Identities=24% Similarity=0.309 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~ 80 (179)
-.+.|++|++|++.+.+ +++++. ||- +| ...+++...++.++..+.+.|..
T Consensus 7 T~~g~~~L~~EL~~L~~~~rpe~~~~i~~Ar~~GDl-sENaeY~aAke~q~~le~rI~~Le~~l~~ 71 (74)
T PF03449_consen 7 TPEGYEKLQAELEHLKNVERPEIAEEIAEAREQGDL-SENAEYHAAKERQAFLEARIRELEERLAR 71 (74)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSS-TSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999988632 234443 321 11 13455566666677777776653
No 69
>KOG0860|consensus
Probab=54.03 E-value=99 Score=23.78 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=12.5
Q ss_pred ccHHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKK 47 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~ 47 (179)
..++.+..|+++++..+=+
T Consensus 27 ~~~k~~~tq~QvdeVv~IM 45 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIM 45 (116)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4567788888877663333
No 70
>KOG1962|consensus
Probab=53.50 E-value=1.4e+02 Score=25.40 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy10293 7 LIVFISVCTALLSEGLTWLL 26 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~L 26 (179)
++++++++.==+-+++..+.
T Consensus 105 f~LFL~lvI~R~~~ll~~l~ 124 (216)
T KOG1962|consen 105 FVLFLSLVIRRLHTLLRELA 124 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333333333
No 71
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=53.43 E-value=51 Score=24.91 Aligned_cols=9 Identities=11% Similarity=0.339 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy10293 63 KIEREEERL 71 (179)
Q Consensus 63 kler~e~~l 71 (179)
.+|++++++
T Consensus 94 E~~~L~~ei 102 (104)
T PF11460_consen 94 ELEALQAEI 102 (104)
T ss_pred HHHHHHHHh
Confidence 344444433
No 72
>PRK11637 AmiB activator; Provisional
Probab=53.41 E-value=99 Score=28.03 Aligned_cols=9 Identities=11% Similarity=0.468 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q psy10293 33 YQKLKTEIE 41 (179)
Q Consensus 33 ~~~l~~e~~ 41 (179)
.+.++.+++
T Consensus 49 l~~l~~qi~ 57 (428)
T PRK11637 49 LKSIQQDIA 57 (428)
T ss_pred HHHHHHHHH
Confidence 333444443
No 73
>KOG2391|consensus
Probab=53.21 E-value=1.1e+02 Score=27.76 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhHHHH
Q psy10293 64 IEREEERLKNNNKDLT 79 (179)
Q Consensus 64 ler~e~~l~~~~~~l~ 79 (179)
+|++|.|+-.++.+.-
T Consensus 255 ~etLEqq~~~L~~niD 270 (365)
T KOG2391|consen 255 KETLEQQLQSLQKNID 270 (365)
T ss_pred HHHHHHHHHHHHhhhH
Confidence 4455555555555544
No 74
>PRK01919 tatB sec-independent translocase; Provisional
Probab=52.78 E-value=1.3e+02 Score=24.66 Aligned_cols=13 Identities=15% Similarity=0.256 Sum_probs=9.0
Q ss_pred chHHHHHHHHHHH
Q psy10293 3 ADTLLIVFISVCT 15 (179)
Q Consensus 3 ~d~l~I~~~a~~t 15 (179)
..+++|+++|++.
T Consensus 7 ~ElliI~VVALiV 19 (169)
T PRK01919 7 SKLALIGVVALVV 19 (169)
T ss_pred HHHHHHHHHHHhe
Confidence 4677777777764
No 75
>PRK11677 hypothetical protein; Provisional
Probab=52.69 E-value=82 Score=24.67 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHH
Q psy10293 8 IVFISVCTALLSEGLTWLLVYRT-EKYQKLKTEIEKQ 43 (179)
Q Consensus 8 I~~~a~~t~l~se~ls~~Lvyr~-e~~~~l~~e~~~~ 43 (179)
+.++++++|++.-++--.+..+. .+=+++++++++.
T Consensus 5 ~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~ 41 (134)
T PRK11677 5 YALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKN 41 (134)
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence 34455555555444444444222 1223444444444
No 76
>PRK10722 hypothetical protein; Provisional
Probab=52.17 E-value=30 Score=29.90 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhch---hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDK---NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k---~~~kkler~e~~l~~~~~~l~~~k 82 (179)
+-+|+|||++.++++|++++....- .+ .-.+|||. |.++.|+|+..|
T Consensus 164 r~Ry~rLQq~sD~qlD~lrqq~~~L--q~~L~~t~rKLEn----LTdIERqLSsRk 213 (247)
T PRK10722 164 RQRYQKLQQSSDSELDALRQQQQRL--QYQLELTTRKLEN----LTDIERQLSSRK 213 (247)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHH----HHHHHHHhccCC
Confidence 4578999988888888887754211 10 12233433 666677887544
No 77
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=52.12 E-value=1.1e+02 Score=23.85 Aligned_cols=64 Identities=14% Similarity=0.271 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHhhhhh-hchhHHHHHHHHHHHHHHhhHHH
Q psy10293 14 CTALLSEGLTWLLVYR--TEKYQKLKTEIEKQMEKKKEAIESTL-LDKNVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 14 ~t~l~se~ls~~Lvyr--~e~~~~l~~e~~~~~ek~k~~~~~~~-~~k~~~kkler~e~~l~~~~~~l 78 (179)
.|+++ +++--+|+=+ .-+-+.++.++++++...+++...=. .|.-.++.+++++..+++..++-
T Consensus 48 ~ttIi-tFlmvfLIQn~q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~ 114 (132)
T PF04120_consen 48 ATTII-TFLMVFLIQNTQNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQA 114 (132)
T ss_pred HHHHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHh
Confidence 34444 5555555522 12233555666666555554431100 24456777887777777665543
No 78
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=51.71 E-value=38 Score=32.68 Aligned_cols=9 Identities=22% Similarity=0.091 Sum_probs=4.7
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.||.|+.+|
T Consensus 484 K~E~Ke~EG 492 (609)
T PRK12772 484 KEEYKQDEG 492 (609)
T ss_pred HHHHHhccC
Confidence 445555554
No 79
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=51.51 E-value=77 Score=24.46 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHH
Q psy10293 64 IEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLS 98 (179)
Q Consensus 64 ler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~ 98 (179)
-+...+++++.++|++.. -++++.+....+++
T Consensus 65 ~~t~~~~~k~~~~qls~v---~Nilvsv~~~~~~~ 96 (142)
T PF11712_consen 65 EDTPAQELKSVKRQLSTV---FNILVSVFAVFFAG 96 (142)
T ss_pred cCcHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 345567889999999853 34444444444443
No 80
>PF03268 DUF267: Caenorhabditis protein of unknown function, DUF267; InterPro: IPR004950 This family of proteins, from Caenorhabditis species, have not been characterised though a number are annotated as 'serpentine receptor, class r' proteins.
Probab=51.21 E-value=1.9e+02 Score=26.28 Aligned_cols=26 Identities=31% Similarity=0.262 Sum_probs=17.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Q psy10293 21 GLTWLLVYRTEKYQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 21 ~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~ 51 (179)
+.-|.|| -..+..|++-..|++++|+
T Consensus 171 L~~y~lv-----~~al~REi~yFN~ELe~A~ 196 (353)
T PF03268_consen 171 LAIYFLV-----NSALNREIEYFNEELEKAS 196 (353)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 4556665 3467778877777777765
No 81
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=51.17 E-value=98 Score=22.88 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHh--hHHHHHH
Q psy10293 14 CTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNN--NKDLTMV 81 (179)
Q Consensus 14 ~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~--~~~l~~~ 81 (179)
+.+++..++.|.+ ++ +|-+ ++++++..++..+ .+.+++++|.+++++ .+|+...
T Consensus 15 ~~~~~~~~~~~~l--~~-~~a~-~~~~~~l~~~~~~----------~~~Rl~~lE~~l~~LPt~~dv~~L 70 (106)
T PF10805_consen 15 VFGIAGGIFWLWL--RR-TYAK-REDIEKLEERLDE----------HDRRLQALETKLEHLPTRDDVHDL 70 (106)
T ss_pred HHHHHHHHHHHHH--HH-hhcc-HHHHHHHHHHHHH----------HHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3344444554444 33 4533 6677665544443 356899999999988 7777643
No 82
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=50.96 E-value=60 Score=21.74 Aligned_cols=13 Identities=31% Similarity=0.577 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
-.+.+++.+++++
T Consensus 17 ~~~~~~~~ei~~l 29 (80)
T PF04977_consen 17 SRYYQLNQEIAEL 29 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555554
No 83
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=50.87 E-value=19 Score=24.48 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKYQKLKTE 39 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~~~l~~e 39 (179)
-++..++|...+.=.+ |.|+|++.|+-
T Consensus 16 g~iG~a~Ypi~~~Pmm--~~eeYk~~Q~~ 42 (58)
T PF15061_consen 16 GLIGAALYPIYFRPMM--NPEEYKKEQKI 42 (58)
T ss_pred HHHHHHHhhhhccccc--ChHHHHHHHHH
Confidence 3344455555554444 89999987754
No 84
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=50.59 E-value=78 Score=21.59 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhHHHH
Q psy10293 65 EREEERLKNNNKDLT 79 (179)
Q Consensus 65 er~e~~l~~~~~~l~ 79 (179)
++.|.++++++.++.
T Consensus 30 ~~~e~~i~~~~~~l~ 44 (71)
T PF10779_consen 30 AANEKDIKNLNKQLE 44 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555555555
No 85
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=50.52 E-value=2e+02 Score=26.49 Aligned_cols=20 Identities=5% Similarity=-0.092 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
.-+.+.++..+.+...+.+.
T Consensus 100 ~g~~~~~l~~di~~i~~~~~ 119 (529)
T TIGR02857 100 SGELATLALEGVEALDGYFA 119 (529)
T ss_pred hHHHHHHHHhhHHHHHHHHH
Confidence 34456666666665554443
No 86
>KOG1666|consensus
Probab=50.50 E-value=1.6e+02 Score=25.09 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=29.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHh--hhhhhc--hhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAI--ESTLLD--KNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~--~~~~~~--k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++|...+--+++++.+.-.-|+. |.+..+ .++.+.+|+-.+.|-+.+.+++.
T Consensus 126 nTerLeRst~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgk 181 (220)
T KOG1666|consen 126 NTERLERSTDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGK 181 (220)
T ss_pred hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhH
Confidence 55555555555555544443432 333222 26777788777777766666664
No 87
>TIGR01462 greA transcription elongation factor GreA. In the Chlamydias and some spirochetes, the region described by this model is found as the C-terminal region of a much larger protein.
Probab=49.80 E-value=48 Score=25.88 Aligned_cols=53 Identities=26% Similarity=0.258 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHHHHH--------HHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQMEK--------KKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek--------~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+... .+++. |+ ++| +..+++...+|.++..+.++|...+
T Consensus 3 T~~g~~~L~~el~~L~~~~r~~~~~~~~~a~~~gD-l~Ena~y~aak~~~~~~e~ri~~L~~~L~~a~ 69 (151)
T TIGR01462 3 TQEGYEKLKEELEYLKTVKRPEISEEIAEAREHGD-LSENAEYHAAKEEQGFNEGRIAELEDLLANAQ 69 (151)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHCCC-hhhccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 357899999999888432 33332 22 011 2345555566677888888887654
No 88
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=49.75 E-value=50 Score=29.71 Aligned_cols=10 Identities=10% Similarity=0.116 Sum_probs=5.1
Q ss_pred HHHHHHHhhh
Q psy10293 44 MEKKKEAIES 53 (179)
Q Consensus 44 ~ek~k~~~~~ 53 (179)
.||.|+.+|+
T Consensus 221 KdE~K~~EGd 230 (347)
T TIGR00328 221 KDELKQSEGD 230 (347)
T ss_pred HHHHHhccCC
Confidence 4455665543
No 89
>KOG2150|consensus
Probab=49.41 E-value=28 Score=33.50 Aligned_cols=14 Identities=29% Similarity=0.482 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHH
Q psy10293 59 NVKKKIEREEERLK 72 (179)
Q Consensus 59 ~~~kkler~e~~l~ 72 (179)
+.-|||||+++|+|
T Consensus 49 kEIKKLQRlRdQIK 62 (575)
T KOG2150|consen 49 KEIKKLQRLRDQIK 62 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 34456667666666
No 90
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=47.83 E-value=55 Score=29.32 Aligned_cols=9 Identities=22% Similarity=0.047 Sum_probs=4.6
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.||.|+.+|
T Consensus 220 KdE~Ke~EG 228 (342)
T TIGR01404 220 KREYKEQEG 228 (342)
T ss_pred HHHHHhccC
Confidence 445555554
No 91
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=47.71 E-value=1.6e+02 Score=25.23 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
+.+++|+.+++-+++++- +
T Consensus 38 ~~~~~~e~~~kaeeaqK~-G 56 (306)
T PF04888_consen 38 KAEEIEEAQEKAEEAQKA-G 56 (306)
T ss_pred HHHHHHHHHHHHHHHHhc-C
Confidence 445566666666666665 5
No 92
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=47.35 E-value=91 Score=21.39 Aligned_cols=12 Identities=50% Similarity=0.645 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q psy10293 32 KYQKLKTEIEKQ 43 (179)
Q Consensus 32 ~~~~l~~e~~~~ 43 (179)
...+++.+++++
T Consensus 32 ~~~~~~~~~~~l 43 (85)
T TIGR02209 32 ELQKLQLEIDKL 43 (85)
T ss_pred HHHHHHHHHHHH
Confidence 344566666554
No 93
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=47.19 E-value=1.3e+02 Score=23.05 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~ 51 (179)
...+.++++++++.|..++..
T Consensus 8 ~q~~~l~~~v~~lRed~r~SE 28 (112)
T PF07439_consen 8 QQLGTLNAEVKELREDIRRSE 28 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888877666543
No 94
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=47.17 E-value=54 Score=29.50 Aligned_cols=9 Identities=11% Similarity=0.110 Sum_probs=4.8
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.||.|+.+|
T Consensus 221 KdE~Ke~EG 229 (349)
T PRK12721 221 KQEYKDSEG 229 (349)
T ss_pred HHHHHhccC
Confidence 445566554
No 95
>PF13942 Lipoprotein_20: YfhG lipoprotein
Probab=47.14 E-value=60 Score=26.76 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhh---hhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIES---TLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~---~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-+.+|++||.+.+..+|.+++.+.. . .+ .-.+|||. |..+.|+||.-|
T Consensus 117 Er~Ry~rLQqssD~~lD~Lr~qq~~Lq~q-L~-~T~RKLEn----LTDIERQLSSRK 167 (179)
T PF13942_consen 117 ERARYQRLQQSSDSELDALRQQQQRLQYQ-LD-TTTRKLEN----LTDIERQLSSRK 167 (179)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HH-HHHHHHhh----hhHHHHHHhccC
Confidence 3568999999998888888775421 0 00 12344544 667777877544
No 96
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=46.96 E-value=2.2e+02 Score=25.78 Aligned_cols=36 Identities=6% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHhhHHHH-H---HhhhHH--HHHHHHHHHHHHHHHHhhcc
Q psy10293 71 LKNNNKDLT-M---VKMKSM--FAIGFAFTALLSMFNTIFDG 106 (179)
Q Consensus 71 l~~~~~~l~-~---~k~k~m--~~~~l~~i~if~l~~~~f~g 106 (179)
.+++++|++ . .+.+|+ .+-+++.+|+|.-+-+...+
T Consensus 186 ~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~ 227 (357)
T PRK02201 186 KQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS 227 (357)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555 2 237776 34455567887433333333
No 97
>PRK12704 phosphodiesterase; Provisional
Probab=46.86 E-value=2.2e+02 Score=27.05 Aligned_cols=9 Identities=0% Similarity=0.316 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q psy10293 18 LSEGLTWLL 26 (179)
Q Consensus 18 ~se~ls~~L 26 (179)
++-++.|++
T Consensus 16 iG~~ig~~i 24 (520)
T PRK12704 16 VGAVIGYFV 24 (520)
T ss_pred HHHHHHHHH
Confidence 333344444
No 98
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.53 E-value=42 Score=22.53 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
..+.+++++++++
T Consensus 24 ~ei~~l~~~i~~l 36 (80)
T PF04977_consen 24 QEIAELQKEIEEL 36 (80)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666666665
No 99
>PRK06298 type III secretion system protein; Validated
Probab=46.26 E-value=59 Score=29.33 Aligned_cols=9 Identities=11% Similarity=0.047 Sum_probs=4.6
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
-||.|+.+|
T Consensus 222 KdE~K~~EG 230 (356)
T PRK06298 222 KQEFKDTEG 230 (356)
T ss_pred HHHHHhccC
Confidence 445555554
No 100
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=45.92 E-value=1.6e+02 Score=23.72 Aligned_cols=57 Identities=9% Similarity=0.053 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc
Q psy10293 60 VKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVAKLPFTPISWV 120 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~~~~f~g~~VaklPF~pi~~~ 120 (179)
+.+.+|+++.++++..+.-+..-+...+..++..++++..+-+|--+=-|. +||-.|
T Consensus 72 el~~le~~k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~e~sWDvM----EPVTYf 128 (180)
T PF04678_consen 72 ELAPLEKIKQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFWEYSWDVM----EPVTYF 128 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh----hhHHHH
Confidence 334455555555544444444345555666666666665555552222332 566544
No 101
>KOG0804|consensus
Probab=45.49 E-value=48 Score=31.21 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy10293 60 VKKKIEREEERLK 72 (179)
Q Consensus 60 ~~kkler~e~~l~ 72 (179)
.+++++.+|||+.
T Consensus 433 ~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 433 KDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 102
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=45.45 E-value=1.1e+02 Score=21.60 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=31.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALLSMF 100 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if~l~ 100 (179)
++.+|+++++++++.-||..-..+ +-.|| .=+..+||++-. =.++++++...++..+
T Consensus 10 ~~~d~~~i~~rLd~iEeKVEf~~~---------E~~Qr---~Gkk~GRDiGIl---YG~viGlli~~~~~~l 66 (70)
T TIGR01149 10 EPDEFNEVMKRLDEIEEKVEFVNG---------EVAQR---IGKKVGRDIGIL---YGLVIGLILFLIYILL 66 (70)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH---------HHHHH---HhHHhhhHHHHH---HHHHHHHHHHHHHHHH
Confidence 677888888887774443333221 12222 234567788732 4556666555554433
No 103
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=44.07 E-value=98 Score=22.27 Aligned_cols=20 Identities=45% Similarity=0.534 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy10293 32 KYQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~k~~~ 51 (179)
+.+|+.+++++.-+|.-+.+
T Consensus 2 KleKi~~eieK~k~Kiae~Q 21 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIAELQ 21 (83)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 56677777777665555543
No 104
>PRK01770 sec-independent translocase; Provisional
Probab=44.07 E-value=1.8e+02 Score=23.80 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=14.1
Q ss_pred chHHHHHHHHHHH-------HHHHHHHHHHH
Q psy10293 3 ADTLLIVFISVCT-------ALLSEGLTWLL 26 (179)
Q Consensus 3 ~d~l~I~~~a~~t-------~l~se~ls~~L 26 (179)
..+++|++++++. .+.-++-.|+-
T Consensus 7 ~ELllI~vVaLlV~GPerLP~~~r~lg~~i~ 37 (171)
T PRK01770 7 SELLLVFVIGLVVLGPQRLPVAVKTVAGWIR 37 (171)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 4677777777754 24445555544
No 105
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=43.89 E-value=1.1e+02 Score=22.32 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~ 49 (179)
.|.|++||+||+++.+.+++
T Consensus 67 peA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 67 PEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35566666666655444443
No 106
>PRK08156 type III secretion system protein SpaS; Validated
Probab=43.84 E-value=65 Score=29.21 Aligned_cols=32 Identities=13% Similarity=0.085 Sum_probs=13.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy10293 21 GLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIES 53 (179)
Q Consensus 21 ~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~ 53 (179)
++-+.+- |.+-.++++=.-++..|+.|+.+|+
T Consensus 194 ~~D~~~Q-r~~~~k~lkMSkqEvKdE~Ke~EGd 225 (361)
T PRK08156 194 ILDFIAE-YFLHMKDMKMDKQEVKREYKEQEGN 225 (361)
T ss_pred HHHHHHH-HHHHHHHCCCCHHHHHHHHHhccCC
Confidence 3334333 3333444442223334455665543
No 107
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.79 E-value=69 Score=29.29 Aligned_cols=9 Identities=11% Similarity=-0.023 Sum_probs=4.7
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.|+.|+.+|
T Consensus 228 KdE~K~~EG 236 (386)
T PRK12468 228 RDEFKNQEG 236 (386)
T ss_pred HHHHHhccC
Confidence 445555554
No 108
>PRK09108 type III secretion system protein HrcU; Validated
Probab=43.50 E-value=69 Score=28.87 Aligned_cols=9 Identities=22% Similarity=0.195 Sum_probs=4.6
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.||.|+.+|
T Consensus 223 K~E~K~~EG 231 (353)
T PRK09108 223 KREHKESEG 231 (353)
T ss_pred HHHHHhccC
Confidence 445555554
No 109
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=43.25 E-value=72 Score=28.84 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.8
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.|+.|+.+|
T Consensus 230 KdE~Ke~EG 238 (358)
T PRK13109 230 KDEHKQAEG 238 (358)
T ss_pred HHHHHhccC
Confidence 445566554
No 110
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=42.60 E-value=80 Score=21.41 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy10293 7 LIVFISVCTALLSEGLTWLLV 27 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lv 27 (179)
+|+++.++...++-++.+.+.
T Consensus 12 Vi~l~vl~~~~Ftl~IRri~~ 32 (58)
T PF13314_consen 12 VIILIVLFGASFTLFIRRILI 32 (58)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444434444443
No 111
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=42.46 E-value=2.4e+02 Score=27.27 Aligned_cols=55 Identities=11% Similarity=0.080 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhHHHHHHh---hhHHHHHHHHHHHHHHHHHHhhccc-cccccCCccccc
Q psy10293 63 KIEREEERLKNNNKDLTMVK---MKSMFAIGFAFTALLSMFNTIFDGK-IVAKLPFTPISW 119 (179)
Q Consensus 63 kler~e~~l~~~~~~l~~~k---~k~m~~~~l~~i~if~l~~~~f~g~-~VaklPF~pi~~ 119 (179)
...-.-|..+++..=.+.+- ++++++..++++.+| |-+|-.+. .+.-+|+-|++-
T Consensus 99 ~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~--~~~w~aalIllit~PlIPlfM 157 (559)
T COG4988 99 AATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIF--FFNWAAALILLITAPLIPLFM 157 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444322 566666666666665 56677777 666688888754
No 112
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=42.29 E-value=81 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.749 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
++|+..++.++..
T Consensus 49 e~Y~~~k~~L~~a 61 (155)
T PF08496_consen 49 ERYEDMKEQLKQA 61 (155)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666555
No 113
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=42.07 E-value=3.4e+02 Score=26.42 Aligned_cols=33 Identities=12% Similarity=0.181 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhhHHHH-HHhhhHHHHHHHHHHH
Q psy10293 63 KIEREEERLKNNNKDLT-MVKMKSMFAIGFAFTA 95 (179)
Q Consensus 63 kler~e~~l~~~~~~l~-~~k~k~m~~~~l~~i~ 95 (179)
+.|....+-+++++-++ -.|.-+++++.+.++.
T Consensus 299 Eyee~vrKAEE~qK~mgCvgKIlG~vitaVsvvA 332 (593)
T PRK15374 299 EFQEETRKAEETNRIMGCIGKVLGALLTIVSVVA 332 (593)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444445667777777 5667788887777766
No 114
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=41.43 E-value=1.2e+02 Score=23.98 Aligned_cols=52 Identities=12% Similarity=0.211 Sum_probs=31.1
Q ss_pred ccHHHHHHHHHHHHHHHHH-------HHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKK-------KEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTMV 81 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~-------k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~~ 81 (179)
-.+.|++|++|++.+.+++ ++|. ||- +| ...+++..++|.++..+.+.|...
T Consensus 9 T~eg~~~L~~EL~~L~~~r~~i~~~i~~Ar~~GDl-sENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 9 APAARDHLEAELARLRARRDRLAVEVNDRGMIGDH-GDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4789999999998884432 2222 321 11 134445556666777777777743
No 115
>PF09973 DUF2208: Predicted membrane protein (DUF2208); InterPro: IPR009198 There are currently no experimental data for members of this group or their homologues. However, these proteins are predicted to contain three or more transmembrane segments.
Probab=41.33 E-value=2.3e+02 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.360 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHH
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGFAFTAL 96 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~i 96 (179)
|++..|.+|+-+|=.+++++++... |.+++...+.++.+
T Consensus 67 Ek~~~kl~~kD~el~~E~~~~~k~~-~~~ll~~~i~ii~~ 105 (233)
T PF09973_consen 67 EKNANKLMEKDKELQKEYKKQMKAS-MMNLLILPIYIILF 105 (233)
T ss_pred cccHHHHHHhCHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 3344555555555444555554433 43444433333333
No 116
>PRK11677 hypothetical protein; Provisional
Probab=41.32 E-value=1.7e+02 Score=22.86 Aligned_cols=43 Identities=7% Similarity=0.051 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHh
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~ 51 (179)
..+++++-++.-++-+++..-...-.+-+.++++++|+.|++.
T Consensus 3 W~~a~i~livG~iiG~~~~R~~~~~~~~q~~le~eLe~~k~el 45 (134)
T PRK11677 3 WEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAEL 45 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHH
Confidence 4567777777777777777333333345566666666666543
No 117
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=41.31 E-value=1.8e+02 Score=23.15 Aligned_cols=15 Identities=13% Similarity=0.259 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHHHHH
Q psy10293 4 DTLLIVFISVCTALL 18 (179)
Q Consensus 4 d~l~I~~~a~~t~l~ 18 (179)
|++.++.+.++.+++
T Consensus 29 ~~~~~inflil~~iL 43 (184)
T PRK13455 29 DFVVTLAFLLFIGIL 43 (184)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 118
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=41.23 E-value=2e+02 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=11.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~ 49 (179)
+.+-++...+.+++..|...+
T Consensus 111 g~~~~~~~~~~~~~~~~~~~~ 131 (290)
T PF09991_consen 111 GINIFEQLIEQIQESIEQVLK 131 (290)
T ss_pred cCChHHHHHHHHHHHHHHHHH
Confidence 444455556666665555444
No 119
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=41.18 E-value=56 Score=30.92 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy10293 40 IEKQMEKKKEA 50 (179)
Q Consensus 40 ~~~~~ek~k~~ 50 (179)
++++++++|++
T Consensus 36 L~kql~~Lk~q 46 (489)
T PF11853_consen 36 LKKQLEELKAQ 46 (489)
T ss_pred HHHHHHHHHHh
Confidence 33335555553
No 120
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=41.11 E-value=2e+02 Score=23.49 Aligned_cols=18 Identities=17% Similarity=0.503 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10293 10 FISVCTALLSEGLTWLLV 27 (179)
Q Consensus 10 ~~a~~t~l~se~ls~~Lv 27 (179)
++++++.+++-++-|++.
T Consensus 4 i~~i~~~~vG~~~G~~~~ 21 (201)
T PF12072_consen 4 IIAIVALIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444445443
No 121
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=41.00 E-value=86 Score=28.32 Aligned_cols=10 Identities=10% Similarity=0.205 Sum_probs=5.2
Q ss_pred HHHHHHHhhh
Q psy10293 44 MEKKKEAIES 53 (179)
Q Consensus 44 ~ek~k~~~~~ 53 (179)
.|+.|+.+|+
T Consensus 228 KdE~Ke~EGd 237 (359)
T PRK05702 228 KDEHKQSEGD 237 (359)
T ss_pred HHHHHhccCC
Confidence 4455665543
No 122
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=40.93 E-value=2.9e+02 Score=25.36 Aligned_cols=13 Identities=8% Similarity=0.192 Sum_probs=5.5
Q ss_pred HHHHHHHhhHHHH
Q psy10293 67 EEERLKNNNKDLT 79 (179)
Q Consensus 67 ~e~~l~~~~~~l~ 79 (179)
++.++..++..+.
T Consensus 111 l~~q~~~Lq~~~~ 123 (390)
T PRK10920 111 LAKQLDELQQKVA 123 (390)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444444
No 123
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.83 E-value=94 Score=29.39 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHhhHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l 78 (179)
..+.||+++|++.+.+++++
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777776
No 124
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=40.55 E-value=1e+02 Score=23.48 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293 12 SVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 12 a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~ 49 (179)
|+.+-++..+.+|..- |. ++++-+.++++..|..++
T Consensus 72 avgsF~l~s~~~we~C-r~-~r~~~~~~~~~~~e~~~~ 107 (118)
T PF12597_consen 72 AVGSFFLGSLGSWEYC-RY-NRRKERQQMKRAVEAMQE 107 (118)
T ss_pred hhHHHHHHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHH
Confidence 4555566677777766 22 233333444554444443
No 125
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=40.46 E-value=2.3e+02 Score=24.07 Aligned_cols=26 Identities=23% Similarity=0.130 Sum_probs=14.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy10293 1 MWADTLLIVFISVCTALLSEGLTWLL 26 (179)
Q Consensus 1 ~~~d~l~I~~~a~~t~l~se~ls~~L 26 (179)
|.-|..+++.-.+-..++.-++.++|
T Consensus 1 M~id~~t~~~qiInFlILv~lL~~fl 26 (250)
T PRK14474 1 MLIDWFTVVAQIINFLILVYLLRRFL 26 (250)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 56675555555554455555666655
No 126
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=40.15 E-value=1.7e+02 Score=22.36 Aligned_cols=19 Identities=5% Similarity=0.114 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhHHHHH
Q psy10293 62 KKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~~ 80 (179)
+-+.++.++..++.+.|+-
T Consensus 57 ~Ll~~l~~~Y~~l~~Hla~ 75 (128)
T PF06295_consen 57 ELLDNLTQDYQKLYQHLAK 75 (128)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555553
No 127
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=40.15 E-value=77 Score=25.90 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy10293 62 KKIEREEERLKNNNKDLT 79 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~ 79 (179)
+++++.++..+.+|++|-
T Consensus 156 ~~l~~a~~~y~~lN~~Lk 173 (216)
T cd07599 156 RKLEEAKEEYEALNELLK 173 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445555555554
No 128
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=39.90 E-value=2.2e+02 Score=23.57 Aligned_cols=16 Identities=6% Similarity=0.152 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHh
Q psy10293 12 SVCTALLSEGLTWLLV 27 (179)
Q Consensus 12 a~~t~l~se~ls~~Lv 27 (179)
++..+++.-++++++.
T Consensus 60 ~I~FliL~~lL~k~~~ 75 (204)
T PRK09174 60 AITFGLFYLFMSRVIL 75 (204)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444446666554
No 129
>KOG1510|consensus
Probab=38.12 E-value=1.6e+02 Score=23.39 Aligned_cols=18 Identities=17% Similarity=0.193 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHhhH
Q psy10293 59 NVKKKIEREEERLKNNNK 76 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~ 76 (179)
+.++-++++++.++...+
T Consensus 113 ~~e~Ll~~vq~~le~~a~ 130 (139)
T KOG1510|consen 113 KGEKLLEQVQSLLEDIAD 130 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344556677776665544
No 130
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=37.09 E-value=1.3e+02 Score=27.17 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLTMV 81 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~~~ 81 (179)
++++++..+++|+....+++...
T Consensus 270 k~~~k~~~~~~q~~~~~k~~~~~ 292 (406)
T PF02388_consen 270 KKKNKLKELEEQLASLEKRIEEA 292 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHH
Confidence 56677777888888888887753
No 131
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=37.08 E-value=1.4e+02 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
..++++.++++.+.++.++.
T Consensus 108 ~l~~l~~l~~~~~~l~~el~ 127 (188)
T PF03962_consen 108 LLEELEELKKELKELKKELE 127 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666667777777666
No 132
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=36.84 E-value=42 Score=19.65 Aligned_cols=22 Identities=36% Similarity=0.714 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhhccHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKY 33 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~ 33 (179)
+-+..-+++..+-|+|| |+-.|
T Consensus 10 lnftvvlitvilmwllv-rsyqy 31 (31)
T PF05366_consen 10 LNFTVVLITVILMWLLV-RSYQY 31 (31)
T ss_dssp HHHHHHHHHHHHHHHHT-TS---
T ss_pred HhhhHHHHHHHHHHHHH-HhhcC
Confidence 44455677788899999 76443
No 133
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=36.52 E-value=85 Score=25.92 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy10293 38 TEIEKQMEKKKE 49 (179)
Q Consensus 38 ~e~~~~~ek~k~ 49 (179)
+|+++..+++.+
T Consensus 7 eEIq~Arn~ll~ 18 (194)
T PF11833_consen 7 EEIQAARNRLLA 18 (194)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 134
>PF02949 7tm_6: 7tm Odorant receptor; InterPro: IPR004117 All known members of this group are seven-transmembrane proteins that are candidate odorant receptors in Drosophila.; GO: 0004984 olfactory receptor activity, 0005549 odorant binding, 0007608 sensory perception of smell, 0016020 membrane
Probab=36.40 E-value=2.3e+02 Score=22.92 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 16 ALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 16 ~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
...+.+=.+.+.+++++++++.+++++.
T Consensus 15 ~~~~~~K~~~~~~~r~~~~~l~~~l~~~ 42 (313)
T PF02949_consen 15 CILCLLKLIIFLLNRKKLKELIDKLEEL 42 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666777777777666553
No 135
>KOG4552|consensus
Probab=36.33 E-value=2.6e+02 Score=23.99 Aligned_cols=54 Identities=17% Similarity=0.223 Sum_probs=29.6
Q ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHhh--hhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 24 WLLVYRTEKYQKLKTEIEKQMEKKKEAIE--STLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 24 ~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~--~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
.+|+-+.+.|++|-+...++.++-++-.. .. -| +.++-++++|.++|....-|+
T Consensus 50 ~Ll~~kd~ef~~llkla~eq~k~e~~m~~Lea~-VE-krD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 50 KLLDSKDDEFKTLLKLAPEQQKREQLMRTLEAH-VE-KRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHhccHHHHHHHHHhHhHHHHHHHHHHHHHH-HH-HhHHHHHHHHHHHHHHHHHHH
Confidence 45666777777766555444332222110 00 02 456778888888886655554
No 136
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=36.28 E-value=1.5e+02 Score=20.71 Aligned_cols=28 Identities=14% Similarity=0.209 Sum_probs=19.2
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHhhh
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLTMVKMK 84 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~~~k~k 84 (179)
++-|.++++++-+++.+...++.....+
T Consensus 82 ~~~D~~~i~a~~~~~~~~~~~l~~~~~~ 109 (125)
T PF13801_consen 82 PPPDEAAIEALLEEIREAQAELRQERLE 109 (125)
T ss_dssp SSS-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467788888888888877777755433
No 137
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=35.94 E-value=2.2e+02 Score=22.49 Aligned_cols=24 Identities=38% Similarity=0.430 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q psy10293 7 LIVFISVCTALLSEGLTWLLVYRT 30 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lvyr~ 30 (179)
.+.++|+.+.+++-++..+..++.
T Consensus 42 g~~~lAlg~vL~~~g~~~~~~~~~ 65 (191)
T PF04156_consen 42 GIALLALGVVLLSLGLLCLLSKRP 65 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccc
Confidence 344555566677777766665443
No 138
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=35.44 E-value=1.2e+02 Score=20.64 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=5.9
Q ss_pred HHHHHHHHHHhhHH
Q psy10293 64 IEREEERLKNNNKD 77 (179)
Q Consensus 64 ler~e~~l~~~~~~ 77 (179)
+...+.+++.+.++
T Consensus 63 l~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 63 LRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 139
>KOG3032|consensus
Probab=35.32 E-value=1.3e+02 Score=26.04 Aligned_cols=13 Identities=23% Similarity=0.774 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
+.|++.|.+|++.
T Consensus 167 ~Ey~rfqkeI~~~ 179 (264)
T KOG3032|consen 167 DEYKRFQKEIQDD 179 (264)
T ss_pred HHHHHHHHHHHHH
Confidence 4688888888766
No 140
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=35.25 E-value=3.4e+02 Score=24.56 Aligned_cols=27 Identities=19% Similarity=0.502 Sum_probs=22.7
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhhccc
Q psy10293 81 VKMKSMFAIGFAFTALLSMFNTIFDGK 107 (179)
Q Consensus 81 ~k~k~m~~~~l~~i~if~l~~~~f~g~ 107 (179)
+-+=.++....|..|++.++|++.+-+
T Consensus 325 FGyv~lF~~afPlapl~allnN~~eir 351 (452)
T PF04547_consen 325 FGYVTLFSAAFPLAPLFALLNNIVEIR 351 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 336688889999999999999998765
No 141
>PHA01750 hypothetical protein
Probab=35.22 E-value=1.6e+02 Score=20.67 Aligned_cols=17 Identities=12% Similarity=0.212 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHhhHHH
Q psy10293 62 KKIEREEERLKNNNKDL 78 (179)
Q Consensus 62 kkler~e~~l~~~~~~l 78 (179)
+|.+.+|+|.++..+.+
T Consensus 56 ikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 56 IKQDELSRQVEEIKRKL 72 (75)
T ss_pred HhHHHHHHHHHHHHHhh
Confidence 45555666777666554
No 142
>COG2348 Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]
Probab=35.20 E-value=1e+02 Score=28.58 Aligned_cols=48 Identities=21% Similarity=0.371 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHH---HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 32 KYQKLKTEIEKQ---MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 32 ~~~~l~~e~~~~---~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
...+|+.++++. ++|.+.+..++...++++.+++++++|++..+.+..
T Consensus 247 ~~~~l~~~l~~~~~~~~r~~~~l~~~~~~~k~~~~l~~l~~q~~~~~~~~~ 297 (418)
T COG2348 247 YLKKLNQELAKLAAEIERVQEALKESPKSEKAQNKLNRLQMQLEAFEERIA 297 (418)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhccCcchhhhhhhHHHHHHHHHhhHHHHh
Confidence 334555555444 444444433321123566778888888887777766
No 143
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=34.44 E-value=53 Score=27.75 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=7.6
Q ss_pred HHHHHHHHHHhhHHHH
Q psy10293 64 IEREEERLKNNNKDLT 79 (179)
Q Consensus 64 ler~e~~l~~~~~~l~ 79 (179)
++..++..+..|.+|.
T Consensus 154 l~~Ak~~ye~~N~~L~ 169 (225)
T cd07590 154 LAAARADFEKQNIKLL 169 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344445555555
No 144
>PF06273 eIF-4B: Plant specific eukaryotic initiation factor 4B; InterPro: IPR010433 This family consists of several plant specific eukaryotic initiation factor 4B proteins.
Probab=34.18 E-value=80 Score=29.94 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhh------hhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIES------TLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~------~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
++.-+.|+++|..+.+++++...+ +..+..-.++|+++|.+|+.+..||=
T Consensus 365 ~~~ek~lKeeI~~lk~~l~~~~~~~~~~~~~~~~~~~~e~i~~kE~eLe~L~~elD 420 (492)
T PF06273_consen 365 TEEEKFLKEEINALKERLEEEEASSEKSKGSGEEESLREEISQKEKELEKLTRELD 420 (492)
T ss_pred cccchhhhhhHHHHHHHHHhhhhhhhhccccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 344567888887775555443211 10123455678888889998888886
No 145
>KOG1029|consensus
Probab=33.91 E-value=1e+02 Score=31.25 Aligned_cols=14 Identities=43% Similarity=0.769 Sum_probs=8.9
Q ss_pred ccHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEK 42 (179)
Q Consensus 29 r~e~~~~l~~e~~~ 42 (179)
|+|+|.|=|.|+++
T Consensus 318 rkeNy~kGqaELer 331 (1118)
T KOG1029|consen 318 RKENYEKGQAELER 331 (1118)
T ss_pred hHHhHhhhhHHHHH
Confidence 56677776666544
No 146
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=33.75 E-value=1.3e+02 Score=24.91 Aligned_cols=9 Identities=33% Similarity=0.841 Sum_probs=1.8
Q ss_pred HHHHhhccc
Q psy10293 99 MFNTIFDGK 107 (179)
Q Consensus 99 l~~~~f~g~ 107 (179)
.|-++-.|.
T Consensus 121 ~we~~q~Gk 129 (190)
T PF06936_consen 121 MWESMQEGK 129 (190)
T ss_dssp HHHH-----
T ss_pred HHHHHHHHH
Confidence 444444444
No 147
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=33.44 E-value=1.5e+02 Score=24.49 Aligned_cols=47 Identities=28% Similarity=0.328 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh-----hhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 32 KYQKLKTEIEKQMEKKKEAI-----ESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~k~~~-----~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
.-++|++|+.+..|+++|.- .+..-| ++=.|+...=|-|++|++||-
T Consensus 48 ~T~eLkNeLREVREELkEKmeEIKQIKdiMD-KDFDKL~EFVEIMKeMQkDMD 99 (205)
T PF15079_consen 48 GTQELKNELREVREELKEKMEEIKQIKDIMD-KDFDKLHEFVEIMKEMQKDMD 99 (205)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHhHH
Confidence 34566666655544444421 111112 344556666668889998876
No 148
>PF15062 ARL6IP6: Haemopoietic lineage transmembrane helix
Probab=33.37 E-value=29 Score=25.29 Aligned_cols=21 Identities=33% Similarity=0.605 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc
Q psy10293 9 VFISVCTALLSEGLTWLLVYR 29 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr 29 (179)
.++++++|++++..+|.+||=
T Consensus 26 ~~~~ll~Gllv~~Ft~~ivYl 46 (85)
T PF15062_consen 26 LLSSLLCGLLVCSFTWTIVYL 46 (85)
T ss_pred HHHHHHHHHHHHHhhheeEEe
Confidence 678999999999999999973
No 149
>PF01312 Bac_export_2: FlhB HrpN YscU SpaS Family; InterPro: IPR006135 Salmonella, and related proteobacteria, secrete large amounts of proteins into the culture media. The major secreted proteins are either flagellar proteins or virulence factors [], secreted through the flagellar or virulence export structures respectively. Both secretion systems penetrate the inner and outer membranes and their components bear substantial sequence similarity. Both the flagellar and needle like pilus look fairly similar to each other []. The type III secretion system is of great interest, as it is used to transport virulence factors from the pathogen directly into the host cell [] and is only triggered when the bacterium comes into close contact with the host. It is believed that the family of type III flagellar and pilus inner membrane proteins are used as structural moieties in a complex with several other subunits []. One such set of inner membrane proteins, labeled "S" here for nomenclature purposes, includes the Salmonella and Shigella SpaS, the Yersinia YscU, Rhizobium Y4YO, and the Erwinia HrcU genes, Salmonella FlhB and Escherichia coli EscU [, , , ]. Many of the proteins, in this entry, undergo autocatalytic cleavage promoted by cyclization of a conserved asparagine. These proteins belong to the MEROPS peptidase family N6. ; GO: 0009306 protein secretion, 0016020 membrane; PDB: 3C03_C 3BZT_A 3BZV_B 3BZP_A 3BZX_B 3BZL_B 3C00_A 3BZR_A 3BZY_A 3BZO_A ....
Probab=33.22 E-value=53 Score=29.31 Aligned_cols=9 Identities=22% Similarity=0.279 Sum_probs=3.4
Q ss_pred HHHHHHHhh
Q psy10293 44 MEKKKEAIE 52 (179)
Q Consensus 44 ~ek~k~~~~ 52 (179)
.|+.|+.+|
T Consensus 223 K~E~Ke~EG 231 (343)
T PF01312_consen 223 KDEHKESEG 231 (343)
T ss_dssp --HHHCCCC
T ss_pred HHHHHhccC
Confidence 444555443
No 150
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=33.09 E-value=2.9e+02 Score=23.12 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=12.6
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy10293 1 MWADTLLIVFISVCTALLSEGLTWLL 26 (179)
Q Consensus 1 ~~~d~l~I~~~a~~t~l~se~ls~~L 26 (179)
|--|..+++.-.+...++--++.+++
T Consensus 1 M~id~~t~~~qiInFlil~~lL~kfl 26 (246)
T TIGR03321 1 MLIDWFTVIAQLINFLILVWLLKRFL 26 (246)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 44565444444444444444555555
No 151
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=32.65 E-value=1.7e+02 Score=21.79 Aligned_cols=11 Identities=27% Similarity=0.450 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy10293 60 VKKKIEREEER 70 (179)
Q Consensus 60 ~~kkler~e~~ 70 (179)
++++|+++|++
T Consensus 88 ~~k~i~~le~~ 98 (100)
T PF04568_consen 88 HRKEIDELEKH 98 (100)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 33444444443
No 152
>cd07607 BAR_SH3P_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant SH3 domain-containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins with similarity to Arabidopsis thaliana SH3 domain-containing proteins 1 (SH3P1) and 2 (SH3P2). SH3P1 is involved in the trafficking of clathrin-coated vesicles. It is localized at the plasma membrane and is associated with vesicles of the trans-Golgi network. Yeast complementation studies reveal that SH3P1 has similar functions to the Saccharomyces cerevisiae Rvs167p, which is involved in endocytosis and actin cytoskeletal arrangement. Members of this group contain an N-terminal BAR domain and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be i
Probab=32.60 E-value=1.9e+02 Score=24.29 Aligned_cols=49 Identities=16% Similarity=0.388 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHH---HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 31 EKYQKLKTEIEKQ---MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 31 e~~~~l~~e~~~~---~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
.+|.|+..|.+.+ .-|++....++.......-||+.-|.+|.++...|+
T Consensus 109 qrYdRmRQeaE~qa~eV~RRq~k~res~~~~e~~~KL~~AE~Kl~elks~M~ 160 (209)
T cd07607 109 QRYDRLRQEVEAQAAEVARRRSKDKESGGNPDNAAKLQSAESKLDELKSSMN 160 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888877766 223332211110122345566666666655544444
No 153
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=32.21 E-value=95 Score=25.88 Aligned_cols=28 Identities=32% Similarity=0.169 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy10293 13 VCTALLSEGLTWLLVYRTEKYQKLKTEIEK 42 (179)
Q Consensus 13 ~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~ 42 (179)
+++|++ +||.=.-|-.-+.++.+++..+
T Consensus 143 ~LvGVL--vLQaG~~YAe~~~~~~~~~~~~ 170 (196)
T PF08229_consen 143 VLVGVL--VLQAGQWYAERKDAKELEEFEK 170 (196)
T ss_pred HHHHHH--HHHhhHHHHhhhhHHHHHHHHH
Confidence 344444 5666666644444444444433
No 154
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=31.82 E-value=2.4e+02 Score=21.78 Aligned_cols=24 Identities=13% Similarity=0.038 Sum_probs=11.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q psy10293 3 ADTLLIVFISVCTALLSEGLTWLL 26 (179)
Q Consensus 3 ~d~l~I~~~a~~t~l~se~ls~~L 26 (179)
-|...++...+...++.-++.+++
T Consensus 3 ~~~~~~~~~~inF~il~~iL~~f~ 26 (159)
T PRK13461 3 INIPTIIATIINFIILLLILKHFF 26 (159)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 454334443444444444555555
No 155
>KOG0569|consensus
Probab=31.68 E-value=1.8e+02 Score=27.37 Aligned_cols=46 Identities=22% Similarity=0.175 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHH-HHHHHHHHHHHHHHhhh
Q psy10293 7 LIVFISVCTALLSEGLTWLLVYRTEKYQKL-KTEIEKQMEKKKEAIES 53 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l-~~e~~~~~ek~k~~~~~ 53 (179)
.++++.++.+++.-++.+++= .++||-=. |.+.+++.+.+|-=.|+
T Consensus 185 ~l~~~~~i~~~~~l~~l~~~P-ESPk~Ll~~k~~~~~A~~sl~~y~G~ 231 (485)
T KOG0569|consen 185 YLLAFPLIPALLQLALLPFLP-ESPKYLLIKKGDEEEARKALKFYRGK 231 (485)
T ss_pred HHHHHHHHHHHHHHHHHhcCC-CCcchHHHHcCCHHHHHHHHHHHhCC
Confidence 566777777888888887777 89999877 45555554444444444
No 156
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=31.54 E-value=4.3e+02 Score=25.71 Aligned_cols=8 Identities=0% Similarity=-0.134 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy10293 11 ISVCTALL 18 (179)
Q Consensus 11 ~a~~t~l~ 18 (179)
+++..|.+
T Consensus 335 ~~~g~~~~ 342 (656)
T PRK06975 335 CAAAVGGY 342 (656)
T ss_pred HHHHHHHH
Confidence 33333333
No 157
>PTZ00046 rifin; Provisional
Probab=31.27 E-value=1e+02 Score=28.02 Aligned_cols=14 Identities=14% Similarity=-0.042 Sum_probs=7.2
Q ss_pred HHHHHHHH--HHHHhh
Q psy10293 91 FAFTALLS--MFNTIF 104 (179)
Q Consensus 91 l~~i~if~--l~~~~f 104 (179)
.|.+++++ .++-|.
T Consensus 151 aP~~Gliggi~~~~Wk 166 (358)
T PTZ00046 151 APSWGLIGGIAVNAWK 166 (358)
T ss_pred cccccccchHHHHHHH
Confidence 45555554 345554
No 158
>KOG2470|consensus
Probab=30.79 E-value=1.8e+02 Score=26.98 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHH---HHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHH
Q psy10293 15 TALLSEGLTWLLVYRTEKYQKLKTEIE---KQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMF 87 (179)
Q Consensus 15 t~l~se~ls~~Lvyr~e~~~~l~~e~~---~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~ 87 (179)
.|++.|+-+-+=+-++|.|+--++-.+ .++|+.++...+. .+...++.-+.++++.++.+++-...|-+.+
T Consensus 372 gAII~EL~~Eiki~N~e~y~~s~~w~q~lt~Ller~q~~rsea--sq~~L~ew~~eRq~lR~~tK~~FN~qFGs~F 445 (510)
T KOG2470|consen 372 GAIIPELEREIKIQNTEQYRFSQTWLQILTGLLERMQAQRSEA--SQSVLDEWMKERQELRDTTKQMFNAQFGSTF 445 (510)
T ss_pred ccchHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhccee
Confidence 367788888888889999987765543 4477777643111 1223333334444555555555544444433
No 159
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=30.61 E-value=1.5e+02 Score=28.32 Aligned_cols=32 Identities=22% Similarity=0.496 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 17 LLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 17 l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
.+.+++..+ + -...|++|...+++.+++..++
T Consensus 412 g~~tG~~~l-~-~~~~~~~L~~~~~~d~~~~~~~ 443 (561)
T PF00429_consen 412 GVGTGIAGL-V-STQQYRQLSNALEEDLQALEDS 443 (561)
T ss_dssp ----------H-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHhh-h-hhhhhHHHHHHHHHHHHHHHHH
Confidence 355666666 4 4778999999998887776553
No 160
>COG4298 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.60 E-value=1.3e+02 Score=22.16 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
+.+.+.||-.-++.-+.- |.-.+.|+.++++++
T Consensus 50 MG~lfltgSt~tL~K~~r--D~he~~rl~ari~~A 82 (95)
T COG4298 50 MGILFLTGSTVTLVKYRR--DEHESARLSARIEKA 82 (95)
T ss_pred HHHHHHhcchhhhhHHhh--hHHHHHHHHHHHHHH
Confidence 445555555555544433 444566666666665
No 161
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=30.45 E-value=5e+02 Score=25.42 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhHHHH
Q psy10293 65 EREEERLKNNNKDLT 79 (179)
Q Consensus 65 er~e~~l~~~~~~l~ 79 (179)
|+.|.++...++|+-
T Consensus 362 ~~ae~~LR~~QdeLv 376 (603)
T COG4191 362 EQAEAALRRAQDELV 376 (603)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344447777777776
No 162
>PF09429 Wbp11: WW domain binding protein 11; InterPro: IPR019007 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others. This entry represents WW domain-binding protein 11, which may play a role in the regulation of pre-mRNA processing. ; GO: 0006396 RNA processing
Probab=30.43 E-value=1.4e+02 Score=21.05 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=9.3
Q ss_pred chhHHHHHHHHHHHHHH
Q psy10293 57 DKNVKKKIEREEERLKN 73 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~ 73 (179)
++..+.+++++|+.++.
T Consensus 59 ~~~~k~~l~~Le~~l~~ 75 (78)
T PF09429_consen 59 SKVEKEKLKKLEKDLKA 75 (78)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34455566666665553
No 163
>PF08390 TRAM1: TRAM1-like protein; InterPro: IPR013599 This family comprises sequences that are similar to human TRAM1 (Q15629 from SWISSPROT). This is a transmembrane protein of the endoplasmic reticulum, thought to be involved in the membrane transfer of secretory proteins []. The region featured in this family is found N-terminal to the longevity-assurance protein region (IPR005547 from INTERPRO).
Probab=30.37 E-value=82 Score=21.28 Aligned_cols=23 Identities=26% Similarity=0.528 Sum_probs=20.1
Q ss_pred CchhHHHHHHHHHhhhHHHHHHH
Q psy10293 134 TDCSFIFLYILCTMSIRQNIQKM 156 (179)
Q Consensus 134 td~s~i~wYfLcsm~~r~~iqKl 156 (179)
.|..+++.|+++...+|..++..
T Consensus 27 ~D~~fV~fy~i~~t~lRa~~m~y 49 (65)
T PF08390_consen 27 DDLYFVFFYIIVFTFLRAFLMEY 49 (65)
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999988764
No 164
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=30.25 E-value=1.8e+02 Score=25.50 Aligned_cols=9 Identities=33% Similarity=0.287 Sum_probs=5.8
Q ss_pred ccHHHHHHH
Q psy10293 29 RTEKYQKLK 37 (179)
Q Consensus 29 r~e~~~~l~ 37 (179)
+.|..+|..
T Consensus 253 ~~e~~~K~~ 261 (321)
T PF07946_consen 253 SPEAKKKAK 261 (321)
T ss_pred CHHHHHHHH
Confidence 676666655
No 165
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=30.25 E-value=2.5e+02 Score=21.39 Aligned_cols=19 Identities=5% Similarity=0.314 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~ 49 (179)
.+|.+.-+++....++.++
T Consensus 21 nRl~ri~dR~R~L~~~~~~ 39 (130)
T PF11026_consen 21 NRLARIVDRIRQLHDELRD 39 (130)
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3677777777777666555
No 166
>TIGR01710 typeII_sec_gspG general secretion pathway protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=30.07 E-value=2.3e+02 Score=21.47 Aligned_cols=8 Identities=25% Similarity=0.513 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy10293 11 ISVCTALL 18 (179)
Q Consensus 11 ~a~~t~l~ 18 (179)
+++++++.
T Consensus 15 igil~~i~ 22 (134)
T TIGR01710 15 LGLLAALV 22 (134)
T ss_pred HHHHHHHH
Confidence 34444433
No 167
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=29.99 E-value=3.3e+02 Score=22.71 Aligned_cols=10 Identities=20% Similarity=-0.137 Sum_probs=4.1
Q ss_pred HHHHHHHHHh
Q psy10293 18 LSEGLTWLLV 27 (179)
Q Consensus 18 ~se~ls~~Lv 27 (179)
+-|.+.|.=.
T Consensus 124 v~~ml~~~~~ 133 (192)
T COG5374 124 VEEMLEENAK 133 (192)
T ss_pred HHHHHHHhhh
Confidence 3344444433
No 168
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.98 E-value=2.4e+02 Score=21.24 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=7.1
Q ss_pred HHHHHHHH-HHHHhhHH
Q psy10293 62 KKIEREEE-RLKNNNKD 77 (179)
Q Consensus 62 kkler~e~-~l~~~~~~ 77 (179)
|++|.+.+ +++++.+|
T Consensus 85 kRle~l~~eE~~~L~~e 101 (104)
T PF11460_consen 85 KRLEELSPEELEALQAE 101 (104)
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 34444433 44444444
No 169
>PRK00404 tatB sec-independent translocase; Provisional
Probab=29.96 E-value=2.8e+02 Score=21.97 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=8.5
Q ss_pred chHHHHHHHHHHH
Q psy10293 3 ADTLLIVFISVCT 15 (179)
Q Consensus 3 ~d~l~I~~~a~~t 15 (179)
..+++|++++++.
T Consensus 7 ~ELlvI~VVaLlV 19 (141)
T PRK00404 7 SELLLVGLVALLV 19 (141)
T ss_pred HHHHHHHHHHHHh
Confidence 4667777777654
No 170
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=29.61 E-value=1.3e+02 Score=23.79 Aligned_cols=18 Identities=17% Similarity=0.278 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhhHHHHH
Q psy10293 63 KIEREEERLKNNNKDLTM 80 (179)
Q Consensus 63 kler~e~~l~~~~~~l~~ 80 (179)
|--|++-++.++.+|+..
T Consensus 67 kwaKl~Rk~~kl~~el~~ 84 (161)
T PF04420_consen 67 KWAKLNRKLDKLEEELEK 84 (161)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444456666666663
No 171
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.40 E-value=1.5e+02 Score=29.24 Aligned_cols=28 Identities=25% Similarity=0.508 Sum_probs=16.4
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHhhh
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLTMVKMK 84 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~~~k~k 84 (179)
||.=++.+++++++++.++.-+...|.|
T Consensus 634 Er~~~~EL~~~~~~l~~l~~si~~lk~k 661 (717)
T PF10168_consen 634 EREFKKELERMKDQLQDLKASIEQLKKK 661 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555666666666666655554433
No 172
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=29.39 E-value=4.6e+02 Score=24.23 Aligned_cols=34 Identities=15% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Q psy10293 6 LLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEI 40 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~ 40 (179)
++.+++++.+|+|.-+-+-..- -+++-..++.+.
T Consensus 39 all~aLgLGagg~~f~QqQ~~~-~~~~l~a~~~q~ 72 (391)
T COG2959 39 ALLLALGLGAGGYYFGQQQNVL-QTQELQALQQQL 72 (391)
T ss_pred HHHHHHHhchhHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 4455566666666555444433 233333344333
No 173
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=29.33 E-value=81 Score=26.36 Aligned_cols=28 Identities=32% Similarity=0.227 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Q psy10293 13 VCTALLSEGLTWLLVYRTEKYQKLKTEIEK 42 (179)
Q Consensus 13 ~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~ 42 (179)
+++|++ +||.=+-|-.-+.++.+++..+
T Consensus 143 vLvGVL--~LQaG~wYAer~~~~~~~~~~~ 170 (196)
T smart00786 143 VLVGVL--VLQAGLWYAERKDAKQKEEFAA 170 (196)
T ss_pred HHHHHH--HHHhhHHHHHHhHHHHHHHHHH
Confidence 344444 5666666655555555555544
No 174
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=29.29 E-value=3.4e+02 Score=22.73 Aligned_cols=19 Identities=5% Similarity=0.072 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy10293 86 MFAIGFAFTALLSMFNTIF 104 (179)
Q Consensus 86 m~~~~l~~i~if~l~~~~f 104 (179)
+.|+++.++.+..+++.+|
T Consensus 229 ~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 229 WTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444443333333444444
No 175
>KOG1029|consensus
Probab=29.20 E-value=1.4e+02 Score=30.44 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHH
Q psy10293 34 QKLKTEIEKQMEK 46 (179)
Q Consensus 34 ~~l~~e~~~~~ek 46 (179)
.+-|.|+++++||
T Consensus 367 rk~qlElekqLer 379 (1118)
T KOG1029|consen 367 RKAQLELEKQLER 379 (1118)
T ss_pred HHHHHHHHHHHHH
Confidence 3333344444333
No 176
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=29.02 E-value=88 Score=26.18 Aligned_cols=16 Identities=19% Similarity=0.349 Sum_probs=7.4
Q ss_pred HHHHHHHHHHhhHHHH
Q psy10293 64 IEREEERLKNNNKDLT 79 (179)
Q Consensus 64 ler~e~~l~~~~~~l~ 79 (179)
+++.++..+.+|.+|-
T Consensus 153 l~~a~~~Ye~lN~~Lk 168 (224)
T cd07591 153 LDEAKEVYETLNDQLK 168 (224)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444445555554
No 177
>PRK00523 hypothetical protein; Provisional
Probab=29.02 E-value=2.1e+02 Score=20.20 Aligned_cols=14 Identities=14% Similarity=0.214 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHH
Q psy10293 59 NVKKKIEREEERLK 72 (179)
Q Consensus 59 ~~~kkler~e~~l~ 72 (179)
..++|+.+.-.+++
T Consensus 56 PSekki~Q~m~~mk 69 (72)
T PRK00523 56 PSESQIKQVMRSVK 69 (72)
T ss_pred ccHHHHHHHHHHHH
Confidence 45677777666654
No 178
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=28.83 E-value=1.1e+02 Score=25.51 Aligned_cols=20 Identities=10% Similarity=0.327 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
..++++..++..+.+|++|-
T Consensus 144 ae~el~~Ak~~Ye~lN~~L~ 163 (211)
T cd07588 144 AEEELQQAKKVYEELNTELH 163 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666665
No 179
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=28.79 E-value=1.4e+02 Score=18.22 Aligned_cols=31 Identities=29% Similarity=0.384 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHH
Q psy10293 36 LKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKN 73 (179)
Q Consensus 36 l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~ 73 (179)
|++||.-++..+-+ |+ ...+.+|+.|..+.+
T Consensus 2 L~~EI~~Lq~~~a~--Ge-----dv~~~LE~Kek~L~n 32 (35)
T PF08182_consen 2 LCAEIDVLQIQLAD--GE-----DVCKELEQKEKELSN 32 (35)
T ss_pred HHHHHHHHHHHHhc--ch-----hHHHHHHHHHHHHHh
Confidence 56677665554433 11 344567777766654
No 180
>PRK01622 OxaA-like protein precursor; Validated
Probab=28.69 E-value=3.7e+02 Score=22.90 Aligned_cols=38 Identities=3% Similarity=0.185 Sum_probs=22.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccc-cccccCCcccccc
Q psy10293 83 MKSMFAIGFAFTALLSMFNTIFDGK-IVAKLPFTPISWV 120 (179)
Q Consensus 83 ~k~m~~~~l~~i~if~l~~~~f~g~-~VaklPF~pi~~~ 120 (179)
.+|+-...+|.++=++.+..+|... ....+.-+.+.||
T Consensus 132 i~P~~~g~lp~liQ~Pif~~lf~~lr~~~~l~~~~flW~ 170 (256)
T PRK01622 132 INPLAMGCLPLLIQMPILSAFYYAIRRTEEIASHSFLWF 170 (256)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHhChhccCCCceee
Confidence 6665546667677788888888765 2223334444444
No 181
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.54 E-value=93 Score=27.98 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~ 49 (179)
.+|.||+.|++++.++..+
T Consensus 94 ~kl~RL~~Ev~EL~eEl~~ 112 (388)
T PF04912_consen 94 QKLQRLRREVEELKEELEK 112 (388)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999998888554443
No 182
>PF03978 Borrelia_REV: Borrelia burgdorferi REV protein; InterPro: IPR007126 This family consists of several REV proteins from Borrelia burgdorferi (Lyme disease spirochete) and Borrelia garinii. The function of REV is unknown although it has been shown that the gene is induced during the ingesting of host blood suggesting a role in the metabolic activation of borreliae to adapt to physiological stimuli [].
Probab=28.54 E-value=2.5e+02 Score=22.77 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~ 50 (179)
+-+.|+.+++.++++.|+++.+
T Consensus 45 d~~~yknyk~ki~eLke~lK~~ 66 (160)
T PF03978_consen 45 DAEAYKNYKKKINELKEDLKDV 66 (160)
T ss_pred cHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888888888887777765
No 183
>PHA03072 putative viral membrane protein; Provisional
Probab=28.34 E-value=1.7e+02 Score=24.29 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKYQKLK 37 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~~~l~ 37 (179)
+.+++-++|.++=|+=+++.+-+.+|-
T Consensus 34 ff~l~L~iS~llf~~Q~s~n~~~~eL~ 60 (190)
T PHA03072 34 FFVIILAISVLLLWFQTSDNSVFSELT 60 (190)
T ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHH
Confidence 444556678888899888887766654
No 184
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.21 E-value=3.7e+02 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=7.9
Q ss_pred ccHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEK 46 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek 46 (179)
|+++.++|..++++..++
T Consensus 172 rre~~~kLe~~ie~~~~~ 189 (240)
T cd07667 172 RKEERPKVPTDVEKCQDR 189 (240)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 185
>PF12644 DUF3782: Protein of unknown function (DUF3782); InterPro: IPR024271 This functionally uncharacterised family of proteins is found in bacteria and archaea. Proteins in this family are typically between 91 and 186 amino acids in length.
Probab=28.04 E-value=1.8e+02 Score=19.00 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFAIGF 91 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~~~l 91 (179)
++|++.++++.+..+++++.... ..+.+.+++++....+....-..+-.-||-.+.-++
T Consensus 1 ~e~~~~~~~i~a~~e~l~~~~~~--lt~e~~~~l~~~~~al~~~~~~~~e~afr~G~~d~l 59 (64)
T PF12644_consen 1 EEYATKEDEIMATKEELEELEER--LTKEDKKRLEEYIDALGARWGLESEEAFRQGFRDGL 59 (64)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 36777788887776666664210 122455566655554544444444444665554443
No 186
>PF06695 Sm_multidrug_ex: Putative small multi-drug export protein; InterPro: IPR009577 This family contains a small number of putative small multi-drug export proteins.
Probab=27.76 E-value=2.7e+02 Score=20.99 Aligned_cols=6 Identities=67% Similarity=0.933 Sum_probs=2.5
Q ss_pred HHHHHH
Q psy10293 61 KKKIER 66 (179)
Q Consensus 61 ~kkler 66 (179)
.+++||
T Consensus 66 ~~~i~k 71 (121)
T PF06695_consen 66 SKKIEK 71 (121)
T ss_pred HHHHHH
Confidence 334444
No 187
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.60 E-value=2.4e+02 Score=25.72 Aligned_cols=48 Identities=19% Similarity=0.108 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhh
Q psy10293 6 LLIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIES 53 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~ 53 (179)
+..++++++.+++--.+=.++-=|..-+++++=.=++.-|+.|+.+|+
T Consensus 190 ~~~~~l~~~~~~liia~~D~~~qr~~~~k~lkMtKqEVKdE~K~sEGd 237 (363)
T COG1377 190 LGKLLLAVLLLLLIVAAFDYFYQRFQYIKKLKMTKQEVKDEYKQSEGD 237 (363)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHhhccCC
Confidence 333444444444333333333325544555542222224455665543
No 188
>KOG3850|consensus
Probab=27.55 E-value=1.6e+02 Score=27.42 Aligned_cols=14 Identities=36% Similarity=0.795 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQ 43 (179)
Q Consensus 30 ~e~~~~l~~e~~~~ 43 (179)
.|+|.+|++.+++.
T Consensus 280 eesye~Lke~~krd 293 (455)
T KOG3850|consen 280 EESYERLKEQIKRD 293 (455)
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888776555
No 189
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=27.25 E-value=1.2e+02 Score=26.07 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Q psy10293 5 TLLIVFISVCTALLSEGLTWLLVYRTEKYQKLKT 38 (179)
Q Consensus 5 ~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~ 38 (179)
...|+.+|++|++++-.+.+.+..+.|..+.+.+
T Consensus 20 ~~~I~llsll~a~itvil~~~~~p~~~~l~~l~~ 53 (248)
T PF06790_consen 20 LISILLLSLLTAFITVILNHIFSPNAEQLQILSN 53 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHh
Confidence 3568899999999999999999988888888876
No 190
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=27.14 E-value=90 Score=25.34 Aligned_cols=19 Identities=16% Similarity=0.576 Sum_probs=2.5
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q psy10293 60 VKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l 78 (179)
-..+.||+.+++.+++.|+
T Consensus 29 L~~~~QRLkDE~RDLKqEl 47 (166)
T PF04880_consen 29 LREEVQRLKDELRDLKQEL 47 (166)
T ss_dssp HHHCH--------------
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445667777777777777
No 191
>PRK09343 prefoldin subunit beta; Provisional
Probab=26.82 E-value=2.3e+02 Score=21.40 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q psy10293 61 KKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 61 ~kkler~e~~l~~~~~~l~ 79 (179)
.++.+.++++++++.+++.
T Consensus 91 ekq~~~l~~~l~e~q~~l~ 109 (121)
T PRK09343 91 EKQEKKLREKLKELQAKIN 109 (121)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 192
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=26.76 E-value=2.3e+02 Score=25.54 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
+.+.++++|+++++.+..+.
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~ 85 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLF 85 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 45566677766666555444
No 193
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=26.56 E-value=2.3e+02 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=13.6
Q ss_pred chhHHHHHHHHHHHHHHhhHHHH
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~ 79 (179)
+..+.+++.+++++++...+++-
T Consensus 99 ee~Q~~~i~~L~~E~~~~~~el~ 121 (144)
T PF11221_consen 99 EEEQLKRIKELEEENEEAEEELQ 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666666666666665554
No 194
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=26.28 E-value=4.3e+02 Score=25.78 Aligned_cols=31 Identities=13% Similarity=0.168 Sum_probs=21.3
Q ss_pred CCCCCchhHHHHHHHHHhhhHHHHHHHhCCC
Q psy10293 130 GEDYTDCSFIFLYILCTMSIRQNIQKMLGFA 160 (179)
Q Consensus 130 g~d~td~s~i~wYfLcsm~~r~~iqKlLg~~ 160 (179)
+.-.++|||+.=++=.-...|-.++++-++.
T Consensus 333 ~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~ 363 (604)
T COG4178 333 GQVHSSLSWFIDNYDAIADWRATLLRLAEFR 363 (604)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333567887777766677788887777665
No 195
>PF03356 Pox_LP_H2: Viral late protein H2; InterPro: IPR005023 This entry represents the late protein H2 found in Vaccinia and other poxviruses. This protein is a highly conserved viral membrane protein found in all sequenced poxviruses, containing an N-terminal transmembrane domain and four conserved cysteines thought to be involved in the formation of intramolecular disulphide bonds []. H2 has been shown to be necessary for entry into the host cell and virus-induced cell-cell fusion, but is not required for virus morphogenesis or the attachment of virus particles to cells. It is part of an entry-fusion complex composed of eight viral membrane proteins [].
Probab=26.19 E-value=3.1e+02 Score=22.75 Aligned_cols=33 Identities=18% Similarity=0.308 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHH--HHHHHH
Q psy10293 11 ISVCTALLSEGLTWLLVYRTEKYQKLK--TEIEKQ 43 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lvyr~e~~~~l~--~e~~~~ 43 (179)
+.++.-.+|.++=|+=++|.+-+.+|- .||++.
T Consensus 34 ffvlil~iS~llf~fQ~s~n~~f~eL~ky~RIKn~ 68 (189)
T PF03356_consen 34 FFVLILIISVLLFWFQTSDNSIFSELAKYARIKNN 68 (189)
T ss_pred HHHHHHHHHHHHHhhhhcCChHHHHHHHHHHHHHh
Confidence 334455677888899898887776665 344443
No 196
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=26.05 E-value=53 Score=26.02 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.2
Q ss_pred CCCCCCchhHHHHHHHHHhhhH
Q psy10293 129 SGEDYTDCSFIFLYILCTMSIR 150 (179)
Q Consensus 129 ~g~d~td~s~i~wYfLcsm~~r 150 (179)
.|++.+|||..++|.|-.-|+.
T Consensus 24 ~G~~s~DCSs~V~~ALr~aG~~ 45 (145)
T PF05382_consen 24 NGPDSYDCSSFVYQALRAAGFK 45 (145)
T ss_pred CCCCcCchHHHHHHHHHHcCCC
Confidence 4888889999999999776663
No 197
>PRK10780 periplasmic chaperone; Provisional
Probab=26.03 E-value=3.2e+02 Score=21.36 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=13.5
Q ss_pred HHHHhhccHHHHHHHHHHHHH
Q psy10293 23 TWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 23 s~~Lvyr~e~~~~l~~e~~~~ 43 (179)
+.++- ..+.+++.++++++.
T Consensus 32 q~il~-~~p~~k~~~~~le~~ 51 (165)
T PRK10780 32 GSIFQ-QVPQRTGVSKQLENE 51 (165)
T ss_pred HHHHH-HCHHHHHHHHHHHHH
Confidence 45555 777787777776655
No 198
>KOG1760|consensus
Probab=25.82 E-value=2.6e+02 Score=21.89 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhHHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~~ 80 (179)
-.|.++.+|.+++....+|.-
T Consensus 93 l~k~i~~les~~e~I~~~m~~ 113 (131)
T KOG1760|consen 93 LEKEIEELESELESISARMDE 113 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655555543
No 199
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.79 E-value=2.5e+02 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q psy10293 33 YQKLKTEIEKQMEK 46 (179)
Q Consensus 33 ~~~l~~e~~~~~ek 46 (179)
|+..++++.+..++
T Consensus 275 Yr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 275 YRSAQDELSEVQEK 288 (359)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444443333333
No 200
>PRK14127 cell division protein GpsB; Provisional
Probab=25.74 E-value=3e+02 Score=20.81 Aligned_cols=19 Identities=11% Similarity=0.249 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q psy10293 61 KKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 61 ~kkler~e~~l~~~~~~l~ 79 (179)
+++++++++++...+.++.
T Consensus 50 k~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 50 QQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555544
No 201
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=25.69 E-value=3e+02 Score=24.09 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhH
Q psy10293 60 VKKKIEREEERLKNNNKDLTMVKMKS 85 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~~~k~k~ 85 (179)
+.+++...++++.++...|+..++++
T Consensus 219 ~Eke~~e~~~~i~e~~~rl~~l~~~~ 244 (269)
T PF05278_consen 219 KEKEVKEIKERITEMKGRLGELEMES 244 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666666555
No 202
>PRK15376 pathogenicity island 1 effector protein SipA; Provisional
Probab=25.29 E-value=3.9e+02 Score=25.81 Aligned_cols=92 Identities=16% Similarity=0.140 Sum_probs=50.3
Q ss_pred HHHhhccHHHHHHHHHHHHH----HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh-hhHHHHHHHHHHHHHH
Q psy10293 24 WLLVYRTEKYQKLKTEIEKQ----MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK-MKSMFAIGFAFTALLS 98 (179)
Q Consensus 24 ~~Lvyr~e~~~~l~~e~~~~----~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k-~k~m~~~~l~~i~if~ 98 (179)
--|| ++|.+--...-++-. +|..-..+...+-|+..+++.|.++.+-+++.++=+..- --.-=.-|+..+|.
T Consensus 161 ~~fv-~~EV~~fI~~cIe~~~g~~ld~~T~~~it~LVD~aA~kA~~aL~~~~q~l~qeqG~sVG~~AR~Le~~AviP~-- 237 (670)
T PRK15376 161 TNFV-MQEVMPYIASCIEHNFGCTLDPLTRSNLTGLVDKAAAKAVEALDMCHQKLTQEQGTSVGREARHLEMQTLIPL-- 237 (670)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCcccchHhHhhHHHHHHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhchhHHHHHHH--
Confidence 3445 677777777766665 333322222222356777778877776665554433211 00000112222332
Q ss_pred HHHHhhccccccccCCcccc
Q psy10293 99 MFNTIFDGKIVAKLPFTPIS 118 (179)
Q Consensus 99 l~~~~f~g~~VaklPF~pi~ 118 (179)
++.+.|...+-.+||-+|++
T Consensus 238 LLRnv~~~IPad~lP~p~~p 257 (670)
T PRK15376 238 LLRNVFAQIPADKLPDPKIP 257 (670)
T ss_pred HHHHHHHhCCcccCCCCCCC
Confidence 77888888888889977763
No 203
>COG3404 Methenyl tetrahydrofolate cyclohydrolase [Amino acid transport and metabolism]
Probab=25.11 E-value=4.2e+02 Score=22.37 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
++-|+.++|.+-+.+ |-..+.+|..+..++++.+|+..+.
T Consensus 30 l~ga~g~~L~~MV~~--lt~gKk~Y~~~d~e~k~i~~~~~~i 69 (208)
T COG3404 30 LVGAMGCALASMVAN--LTRGKKGYEDYDDEMKEILEELQKI 69 (208)
T ss_pred HHHHHHHHHHHHHHH--HHhcccchhhhhhhHHHHHHHHHHH
Confidence 445556666655543 3327777999999998887765543
No 204
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=25.09 E-value=1e+02 Score=25.94 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHH-------HhhHHHH
Q psy10293 60 VKKKIEREEERLK-------NNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~-------~~~~~l~ 79 (179)
+++|+-+.|++++ .+|++|.
T Consensus 137 De~KL~kAe~el~~Ak~~ye~lN~~Lk 163 (211)
T cd07611 137 DEGRIAKAEEEFQKAQKVFEEFNVDLQ 163 (211)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555444 5555554
No 205
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=25.06 E-value=1.2e+02 Score=28.81 Aligned_cols=11 Identities=27% Similarity=0.474 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q psy10293 33 YQKLKTEIEKQ 43 (179)
Q Consensus 33 ~~~l~~e~~~~ 43 (179)
.++|++|++++
T Consensus 33 ie~L~kql~~L 43 (489)
T PF11853_consen 33 IEALKKQLEEL 43 (489)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 206
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=24.92 E-value=2.5e+02 Score=19.75 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy10293 10 FISVCTALLSEGLTWLLV 27 (179)
Q Consensus 10 ~~a~~t~l~se~ls~~Lv 27 (179)
++-++..++.....|++.
T Consensus 7 ~~Pliif~ifVap~wl~l 24 (75)
T TIGR02976 7 AIPLIIFVIFVAPLWLIL 24 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444455666777776
No 207
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=24.76 E-value=2.8e+02 Score=21.36 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=7.4
Q ss_pred ccHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQME 45 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e 45 (179)
++.++..--.|+++.++
T Consensus 28 qk~~le~qL~E~~~al~ 44 (119)
T COG1382 28 QKQQLEAQLKEIEKALE 44 (119)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 208
>PTZ00332 paraflagellar rod protein; Provisional
Probab=24.68 E-value=4.6e+02 Score=25.29 Aligned_cols=29 Identities=10% Similarity=0.185 Sum_probs=20.3
Q ss_pred hHHHHHHHHHH--HHHHhhHHHHHHhhhHHH
Q psy10293 59 NVKKKIEREEE--RLKNNNKDLTMVKMKSMF 87 (179)
Q Consensus 59 ~~~kkler~e~--~l~~~~~~l~~~k~k~m~ 87 (179)
++.+++|.++. +.-.+++|+.|..|-|+.
T Consensus 442 KKErRLEeLDRqIR~~hiqrE~amETlDPNA 472 (589)
T PTZ00332 442 KKEKRLEEIDRNIRTTHIQLEFCVETFDPNA 472 (589)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 56677777777 555778888887765554
No 209
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=24.65 E-value=2.8e+02 Score=20.12 Aligned_cols=31 Identities=32% Similarity=0.281 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293 63 KIEREEERLKNNNKDLTMVKMKSMFAIGFAFTALL 97 (179)
Q Consensus 63 kler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if 97 (179)
+++..|++|+.+.++= =|+|++-+.++++.|
T Consensus 51 ~l~~~E~eL~~LrkEN----rK~~~ls~~l~~v~~ 81 (85)
T PF15188_consen 51 KLENNEKELKLLRKEN----RKSMLLSVALFFVCF 81 (85)
T ss_pred HhhccHHHHHHHHHhh----hhhHHHHHHHHHHHH
Confidence 3444444555444432 455555555555444
No 210
>KOG3088|consensus
Probab=24.20 E-value=1.5e+02 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHH---HHHHHhhccc
Q psy10293 86 MFAIGFAFTALL---SMFNTIFDGK 107 (179)
Q Consensus 86 m~~~~l~~i~if---~l~~~~f~g~ 107 (179)
.+|++.....++ .-+-.|+.|.
T Consensus 136 ylwm~~~~tL~~Niia~la~~i~g~ 160 (313)
T KOG3088|consen 136 YLWMGLVLTLLWNIIACLAWWIKGG 160 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345554444433 2333444444
No 211
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=23.92 E-value=1.8e+02 Score=20.50 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10293 60 VKKKIEREEERLKNNN 75 (179)
Q Consensus 60 ~~kkler~e~~l~~~~ 75 (179)
..++++++++.+++.+
T Consensus 22 ~~~~~~~i~~~~~~~G 37 (93)
T PF00816_consen 22 REEAIAEIRELMAEYG 37 (93)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 4556777777666555
No 212
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=23.91 E-value=2.9e+02 Score=21.92 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhHHH
Q psy10293 63 KIEREEERLKNNNKDL 78 (179)
Q Consensus 63 kler~e~~l~~~~~~l 78 (179)
..++.+++++.+.+++
T Consensus 61 ~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 61 ELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444433
No 213
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=23.90 E-value=1.5e+02 Score=26.97 Aligned_cols=16 Identities=13% Similarity=0.432 Sum_probs=8.9
Q ss_pred hc-cHHHHHHHHHHHHH
Q psy10293 28 YR-TEKYQKLKTEIEKQ 43 (179)
Q Consensus 28 yr-~e~~~~l~~e~~~~ 43 (179)
|| -+.|++..++.+|+
T Consensus 54 YDNDPeMK~Vm~nF~rq 70 (353)
T TIGR01477 54 YDNDPEMKSVMEQFDRQ 70 (353)
T ss_pred CCCcHHHHHHHHHHhHH
Confidence 54 45666666555544
No 214
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=23.89 E-value=3.7e+02 Score=21.34 Aligned_cols=78 Identities=10% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHhhhHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMFA 88 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k~k~m~~ 88 (179)
+.|.++|-++-.++--+.+ .+.+-.+-.++++-+.++.++... ++ -+|.++++.++.++-...-+++ ++
T Consensus 4 ~sIi~~ti~vR~~~~Pl~~-~~~~~~~km~~i~P~~~~i~~k~k------~~---~~~~~~e~~~l~k~~~~~p~~~-~l 72 (181)
T TIGR03592 4 LAIILLTIIVRLLLLPLTL-KQYKSMRKMQELQPKLKEIQEKYK------DD---PQKLQQEMMKLYKEEGVNPLGG-CL 72 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHH------hh---HHHHHHHHHHHHHHhCCCcHHH-HH
Confidence 3455566666665555555 332222222334444555555331 11 1344455665555555332322 23
Q ss_pred HHHHHHHHH
Q psy10293 89 IGFAFTALL 97 (179)
Q Consensus 89 ~~l~~i~if 97 (179)
.+++.+|+|
T Consensus 73 p~liQ~Pif 81 (181)
T TIGR03592 73 PLLIQMPIF 81 (181)
T ss_pred HHHHHHHHH
Confidence 334444444
No 215
>PF08058 NPCC: Nuclear pore complex component; InterPro: IPR012578 Proteins containing this domain are components of the nuclear pore complex []. One member of this domain is Nucleoporin POM34 (Q12445 from SWISSPROT) which is thought to have a role in anchoring peripheral Nups into the pore and mediating pore formation [].
Probab=23.83 E-value=56 Score=25.66 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=16.0
Q ss_pred HHHhCCCCCchhhhcCCCCCCCCC
Q psy10293 154 QKMLGFAPSRTAAKQGGGMFGTQP 177 (179)
Q Consensus 154 qKlLg~~~s~~~~~~~~~~~~~~~ 177 (179)
|++||.+++ ++....++.+..||
T Consensus 118 R~LLGL~~~-~~~~t~~~~~~tpp 140 (144)
T PF08058_consen 118 RKLLGLDPS-SSPATPASLYITPP 140 (144)
T ss_pred HHHcCCCCC-CCCCCCCCcccCCC
Confidence 599999998 44444466776665
No 216
>PTZ00370 STEVOR; Provisional
Probab=23.73 E-value=48 Score=29.38 Aligned_cols=9 Identities=22% Similarity=0.254 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q psy10293 64 IEREEERLK 72 (179)
Q Consensus 64 ler~e~~l~ 72 (179)
.+++|++|.
T Consensus 104 k~klEKel~ 112 (296)
T PTZ00370 104 MSTLEKELL 112 (296)
T ss_pred hHHHHHHHH
Confidence 344444443
No 217
>PLN03086 PRLI-interacting factor K; Provisional
Probab=23.44 E-value=2.3e+02 Score=27.38 Aligned_cols=12 Identities=17% Similarity=0.523 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q psy10293 61 KKKIEREEERLK 72 (179)
Q Consensus 61 ~kkler~e~~l~ 72 (179)
.+++|++|.+++
T Consensus 50 ~~~~~~~~~~~~ 61 (567)
T PLN03086 50 SRRLDAIEAQIK 61 (567)
T ss_pred HHHHHHHHHHHH
Confidence 344545554444
No 218
>KOG1161|consensus
Probab=23.38 E-value=4.6e+02 Score=23.50 Aligned_cols=60 Identities=20% Similarity=0.245 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH-HhhhHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM-VKMKSMFAIGFAF 93 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~-~k~k~m~~~~l~~ 93 (179)
-|++..+..+++.+.|+.++ ++ .++.+...+..+++++++...||-- .++..+=.||+.=
T Consensus 65 lek~~el~~Rl~~L~e~~~~--~~--~~~~~~~~~~~lr~~l~~~~~em~~L~~fs~LN~tGf~K 125 (310)
T KOG1161|consen 65 LEKESELIIRLKELEEKIDA--LS--LEPPSAEEMKELREELVDFHGEMVLLENFSRLNYTGFAK 125 (310)
T ss_pred HHHHHHHHHHHHHHHHHhhc--cc--cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35566666666655555544 22 3556777788888889988888873 3355555555543
No 219
>COG0819 TenA Putative transcription activator [Transcription]
Probab=23.30 E-value=1.9e+02 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.518 Sum_probs=23.2
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHHHh
Q psy10293 23 TWLLVYRTEKYQKLKTEIEKQMEKKKEAI 51 (179)
Q Consensus 23 s~~Lvyr~e~~~~l~~e~~~~~ek~k~~~ 51 (179)
.|.=.|..|.|++..++.++.+|+.-+..
T Consensus 160 ~Wi~~Y~s~ef~~~v~~~~~~ld~~~~~~ 188 (218)
T COG0819 160 EWIDTYASEEFQEAVEELEALLDSLAENS 188 (218)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 35667888999999999999888877644
No 220
>cd00927 Cyt_c_Oxidase_VIc Cytochrome c oxidase subunit VIc. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. The VIc subunit is found only in eukaryotes and its specific function remains unclear. It has been reported that the relative concentrations of some nuclear encoded CcO subunits, including subunit VIc, compared to those of the mitochondrial encoded subunits, are altered significantly during the progression of prostate cancer.
Probab=23.20 E-value=2.7e+02 Score=19.54 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10293 6 LLIVFISVCTALLSEGLTWLLVYRT 30 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~~Lvyr~ 30 (179)
-.-+++|++.++.++++-++++++.
T Consensus 16 ~~~l~~a~~lsl~~~~~~k~~~~~p 40 (70)
T cd00927 16 KRHLIVAFVLSLGAAAAYKFLVNEP 40 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3457788889999999999999554
No 221
>COG1291 MotA Flagellar motor component [Cell motility and secretion]
Probab=23.10 E-value=3.7e+02 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
++.|+++.++..+++|.++ .+-=.||+.+-+++
T Consensus 183 iA~Alv~T~~Gi~~ay~~~--~P~a~kLk~~~~~e 215 (266)
T COG1291 183 IAAALVGTLYGIFLAYGLF--GPLANKLKQKSDEE 215 (266)
T ss_pred HHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHH
Confidence 5678888888889999887 44556676665554
No 222
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.05 E-value=3.2e+02 Score=22.37 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=38.7
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHH----h----hhHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMV----K----MKSMFAIGFAFTALLSMF 100 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~----k----~k~m~~~~l~~i~if~l~ 100 (179)
.+++|.|.+++++...+|.+... +...+-++|+.=.+|-..-++|-.. . ....+..|+-++ .--+
T Consensus 55 ~~~~~lr~~Ae~eN~rkR~~re~-----e~~~k~a~e~~~~dlLpviDnlerAl~~~~~~~d~~~~l~~Gvem~--~~~l 127 (193)
T COG0576 55 LKDKYLRAQAEFENLRKRTERER-----EEAKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMT--LDQL 127 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH--HHHH
Confidence 45678888888877765555433 2233444444444433333333221 1 223344444433 2355
Q ss_pred HHhhccccccccC
Q psy10293 101 NTIFDGKIVAKLP 113 (179)
Q Consensus 101 ~~~f~g~~VaklP 113 (179)
.+++....|.+++
T Consensus 128 ~~~L~k~Gv~~i~ 140 (193)
T COG0576 128 LDALEKLGVEEIG 140 (193)
T ss_pred HHHHHHCCCEEeC
Confidence 6666767665544
No 223
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=22.83 E-value=3.6e+02 Score=23.42 Aligned_cols=48 Identities=27% Similarity=0.461 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++.|..+++.++..++++.+-. +. .+ ....+++..+++++.+..+.+.
T Consensus 134 ke~~ee~kekl~E~~~EkeeL~-~e-le-ele~e~ee~~erlk~le~E~s~ 181 (290)
T COG4026 134 KEDYEELKEKLEELQKEKEELL-KE-LE-ELEAEYEEVQERLKRLEVENSR 181 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH-HH-HHHHHHHHHHHHHHHHHHHHHH
No 224
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=22.75 E-value=4e+02 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.585 Sum_probs=7.8
Q ss_pred cHHHHHHH----HHHHHHH
Q psy10293 30 TEKYQKLK----TEIEKQM 44 (179)
Q Consensus 30 ~e~~~~l~----~e~~~~~ 44 (179)
++.|..|+ .||++++
T Consensus 72 K~eFe~Y~~~a~~Em~KLi 90 (152)
T PF11500_consen 72 KEEFESYHEKAEKEMEKLI 90 (152)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 44555555 4455553
No 225
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.75 E-value=2.7e+02 Score=19.39 Aligned_cols=20 Identities=10% Similarity=0.209 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
-.+++|.+++++..+++++.
T Consensus 70 l~~~~~~l~~~l~~l~~~~~ 89 (91)
T cd04766 70 LEEELAELRAELDELRARLR 89 (91)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44566677777777766654
No 226
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.73 E-value=5.4e+02 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.327 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHhhHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~ 79 (179)
+-++++.|+++++.+|.-.++
T Consensus 332 ~IKqAl~kLk~EI~qMdvrIG 352 (359)
T PF10498_consen 332 KIKQALTKLKQEIKQMDVRIG 352 (359)
T ss_pred HHHHHHHHHHHHHHHhhhhhh
Confidence 345566666666666655444
No 227
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=22.67 E-value=1.9e+02 Score=22.00 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=21.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERL 71 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l 71 (179)
+.++...+++.++..+.+..+ .+++....++++|.++
T Consensus 82 ~~edId~l~~~i~~~~~~~~~------~~~~~r~~~~~l~~~~ 118 (122)
T TIGR03166 82 GGTELEELEEAVRQEFLTLDE------QERSARSAMARLESDF 118 (122)
T ss_pred cccCHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 455666666666555544444 2455666777777755
No 228
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=22.58 E-value=5e+02 Score=22.31 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
+..+|+++-.+.+|++|++..=. .-++-+||--|+.....++++-.+
T Consensus 104 ~L~kLra~~rk~l~~LK~e~~y~----aT~~ii~ky~e~~~~~~~~l~N~k 150 (251)
T COG5415 104 KLAKLRAIHRKKLEKLKEETHYN----ATSSIIQKYSEELNAKYQELNNLK 150 (251)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHH----HHHHHHHHhccchhHHHHHHhhHH
Confidence 34456666666677777644111 223345555455555555555433
No 229
>KOG3771|consensus
Probab=22.47 E-value=2.7e+02 Score=26.24 Aligned_cols=21 Identities=14% Similarity=0.416 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHhhHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~ 79 (179)
+..+.+++.|+..+.+|++|-
T Consensus 161 KAeeEl~~Aq~~fE~lN~~L~ 181 (460)
T KOG3771|consen 161 KAEEELEKAQQVFEELNNELL 181 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777778888888876
No 230
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.42 E-value=1e+02 Score=22.26 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy10293 62 KKIEREEERLKNNNKDLT 79 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~ 79 (179)
+++||+|++-+.+++|+.
T Consensus 21 erIERlEeEk~~i~~dik 38 (85)
T COG3750 21 ERIERLEEEKKTIADDIK 38 (85)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356777777776666665
No 231
>PRK00226 greA transcription elongation factor GreA; Reviewed
Probab=22.37 E-value=2.7e+02 Score=21.67 Aligned_cols=53 Identities=25% Similarity=0.303 Sum_probs=29.8
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+.. +.+++. |+ .+| ...+.+..+++.++..+.++|...+
T Consensus 8 t~~g~~~L~~eL~~l~~~~r~~~~~~~~~A~~~gd-l~En~~y~~a~~~~~~~~~ri~~l~~~L~~a~ 74 (157)
T PRK00226 8 TQEGYEKLEEELEELKTVERPEIIEAIAEAREHGD-LSENAEYHAAKEEQGFIEGRIRELEDKLSNAE 74 (157)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHcCC-ccccccchHHHHHHHHHHHHHHHHHHHHHhCe
Confidence 46789999999988744 333332 22 111 1123333344567777777777544
No 232
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=2.4e+02 Score=24.41 Aligned_cols=45 Identities=20% Similarity=0.174 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++++.+|++|+++..++.++ -.|........+|.+++.++.-.++
T Consensus 63 Q~~~~~L~~ev~~~~~~~~s------~~~~~~t~~~~ie~~l~~l~~~aG~ 107 (247)
T COG3879 63 QKKVNTLAAEVEDLENKLDS------VRRSVLTDDAALEDRLEKLRMLAGS 107 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHH------HHHhHHhHHHHHHHHHHHHHHHhcc
No 233
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=22.16 E-value=3.2e+02 Score=19.96 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHhhHHHH
Q psy10293 60 VKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l~ 79 (179)
-.++++.++++++++++++.
T Consensus 86 lek~~~~l~~~l~e~q~~l~ 105 (110)
T TIGR02338 86 LQRQEERLREQLKELQEKIQ 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666665553
No 234
>PTZ00370 STEVOR; Provisional
Probab=22.15 E-value=90 Score=27.70 Aligned_cols=8 Identities=38% Similarity=0.459 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q psy10293 64 IEREEERL 71 (179)
Q Consensus 64 ler~e~~l 71 (179)
+|+.||-.
T Consensus 112 ~e~~ee~f 119 (296)
T PTZ00370 112 LETYEEMF 119 (296)
T ss_pred HHHHHHHh
Confidence 44444433
No 235
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=21.97 E-value=1e+02 Score=17.32 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhccHHH
Q psy10293 17 LLSEGLTWLLVYRTEKY 33 (179)
Q Consensus 17 l~se~ls~~Lvyr~e~~ 33 (179)
.+.--+.+-|+ |.|+|
T Consensus 10 ~L~~YL~~aLl-~PErF 25 (25)
T PF09604_consen 10 ALFVYLFYALL-RPERF 25 (25)
T ss_pred HHHHHHHHHHh-CcccC
Confidence 33345566666 77764
No 236
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.97 E-value=4.2e+02 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.046 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy10293 11 ISVCTALLSEGLTWLLV 27 (179)
Q Consensus 11 ~a~~t~l~se~ls~~Lv 27 (179)
..++..++.-++++++.
T Consensus 37 ~lI~F~iL~~ll~k~l~ 53 (181)
T PRK13454 37 LLVTLVAIYFVLTRVAL 53 (181)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444445555544
No 237
>KOG3366|consensus
Probab=21.82 E-value=3.1e+02 Score=22.55 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHhh
Q psy10293 59 NVKKKIEREEERLKNNN 75 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~ 75 (179)
.-++++|++|++++.++
T Consensus 109 ~s~~~iq~l~k~le~v~ 125 (172)
T KOG3366|consen 109 LSKKRIQELEKELEKVK 125 (172)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566677666666544
No 238
>PF04350 PilO: Pilus assembly protein, PilO; PDB: 2RJZ_B.
Probab=21.75 E-value=1.1e+02 Score=22.71 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy10293 62 KKIEREEERLKNNNKDLT 79 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~ 79 (179)
.++++.+++++...+++.
T Consensus 23 ~~l~~~~~~~~~~~~~l~ 40 (144)
T PF04350_consen 23 ANLEELKKQLEQLEQQLE 40 (144)
T ss_dssp SSHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 239
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=21.70 E-value=2.6e+02 Score=18.80 Aligned_cols=10 Identities=0% Similarity=0.361 Sum_probs=4.0
Q ss_pred HHHHHHHHHH
Q psy10293 60 VKKKIEREEE 69 (179)
Q Consensus 60 ~~kkler~e~ 69 (179)
-+++.++.|+
T Consensus 24 C~~~~~k~qk 33 (59)
T PF09889_consen 24 CREEYRKRQK 33 (59)
T ss_pred HHHHHHHHHH
Confidence 3344444333
No 240
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=21.66 E-value=1.9e+02 Score=28.93 Aligned_cols=45 Identities=36% Similarity=0.389 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHHH-------------HHHHHHH--hhhhhhchhHHHHHHHHHHHHHHh
Q psy10293 30 TEKYQKLKTEIEKQ-------------MEKKKEA--IESTLLDKNVKKKIEREEERLKNN 74 (179)
Q Consensus 30 ~e~~~~l~~e~~~~-------------~ek~k~~--~~~~~~~k~~~kkler~e~~l~~~ 74 (179)
+++..+|+++|++. .|.+|.+ .+++..|-..+.|+|.+|+|+++.
T Consensus 648 k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~Evaka~~~pd~~~k~kieal~~qik~~ 707 (762)
T PLN03229 648 QEKIESLNEEINKKIERVIRSSDLKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQK 707 (762)
T ss_pred HHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHH
Confidence 45667777776544 3333332 222212334568899888888743
No 241
>PRK15396 murein lipoprotein; Provisional
Probab=21.63 E-value=3.1e+02 Score=19.51 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
++..+|+.+++.+
T Consensus 25 ~kvd~LssqV~~L 37 (78)
T PRK15396 25 AKIDQLSSDVQTL 37 (78)
T ss_pred hhHHHHHHHHHHH
Confidence 4677777777665
No 242
>COG3105 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.52 E-value=3.4e+02 Score=21.46 Aligned_cols=35 Identities=31% Similarity=0.356 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKY-QKLKTEIEKQ 43 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~-~~l~~e~~~~ 43 (179)
.+|++++|++.-.|-..|.-++-+- +++|.|+++.
T Consensus 11 a~igLvvGi~IG~li~Rlt~~~~k~q~~~q~ELe~~ 46 (138)
T COG3105 11 ALIGLVVGIIIGALIARLTNRKLKQQQKLQYELEKV 46 (138)
T ss_pred HHHHHHHHHHHHHHHHHHcchhhhhHHHHHHHHHHH
Confidence 4566666766666666665232221 2556666655
No 243
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=21.52 E-value=3.1e+02 Score=19.48 Aligned_cols=11 Identities=36% Similarity=0.794 Sum_probs=7.6
Q ss_pred HHHHHHHHHHh
Q psy10293 17 LLSEGLTWLLV 27 (179)
Q Consensus 17 l~se~ls~~Lv 27 (179)
++|-++||-|.
T Consensus 35 iisa~lSwkLa 45 (74)
T PF15086_consen 35 IISAVLSWKLA 45 (74)
T ss_pred HHHHHHHHHHH
Confidence 45667788775
No 244
>PF07971 Glyco_hydro_92: Glycosyl hydrolase family 92; InterPro: IPR012939 This domain occurs within alpha-1,2-mannosidases, which remove alpha-1,2-linked mannose residues from Man(9)(GlcNAc)(2) by hydrolysis. They are critical for the maturation of N-linked oligosaccharides and ER-associated degradation [].; PDB: 2WW2_C 2WVY_B 2WVZ_B 2WW0_H 2WZS_D 2WVX_B 2WW1_D 2WW3_C.
Probab=21.42 E-value=52 Score=31.05 Aligned_cols=25 Identities=24% Similarity=0.598 Sum_probs=18.4
Q ss_pred cCCCCCCCCCchh-HHHHHHHHHhhhHH
Q psy10293 125 HRNLSGEDYTDCS-FIFLYILCTMSIRQ 151 (179)
Q Consensus 125 ~rgL~g~d~td~s-~i~wYfLcsm~~r~ 151 (179)
..|++|+| ||+ ...||++++||+=+
T Consensus 401 p~G~pGnd--D~G~MSaWyV~salG~YP 426 (502)
T PF07971_consen 401 PDGLPGND--DCGQMSAWYVFSALGFYP 426 (502)
T ss_dssp TT-CSSTT--TTTCCHHHHHHHHHTEE-
T ss_pred cCCCCCCc--ccchHHHHHHHHHcCCCC
Confidence 57899987 665 57899999987643
No 245
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=21.35 E-value=2.1e+02 Score=21.60 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=12.7
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHH
Q psy10293 23 TWLLVYRTEKYQKLKTEIEKQMEKKK 48 (179)
Q Consensus 23 s~~Lvyr~e~~~~l~~e~~~~~ek~k 48 (179)
=|+|+.|+. +|-+++.++.++.+|
T Consensus 17 ~yF~~iRPQ--kKr~K~~~~m~~~Lk 40 (109)
T PRK05886 17 FMYFASRRQ--RKAMQATIDLHESLQ 40 (109)
T ss_pred HHHHHccHH--HHHHHHHHHHHHhcC
Confidence 367776765 444444444444433
No 246
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=21.31 E-value=5.7e+02 Score=22.82 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=24.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHH---------HHHHhhccccccccCC
Q psy10293 78 LTMVKMKSMFAIGFAFTALLS---------MFNTIFDGKIVAKLPF 114 (179)
Q Consensus 78 l~~~k~k~m~~~~l~~i~if~---------l~~~~f~g~~VaklPF 114 (179)
|......|.++...|.+..++ .|++|++..+++-.||
T Consensus 248 L~vQT~IPi~vsf~Pc~~~wy~pif~i~~~~~~n~~~~iAls~FPf 293 (310)
T PF10319_consen 248 LIVQTVIPICVSFSPCVLSWYGPIFGIDLGRWNNYFSVIALSAFPF 293 (310)
T ss_pred HHHHHHhHHHHhhccHHHHHhHHHHcCChhHHHHHHHHHHHHHccc
Confidence 334445577777777766654 5888877777777664
No 247
>KOG4571|consensus
Probab=21.21 E-value=4.3e+02 Score=23.50 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHh
Q psy10293 62 KKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~~~k 82 (179)
++=|++.+|...+-||+..+|
T Consensus 262 ~rN~~LK~qa~~lerEI~ylK 282 (294)
T KOG4571|consen 262 KRNEELKDQASELEREIRYLK 282 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666665443
No 248
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=21.02 E-value=1.4e+02 Score=24.25 Aligned_cols=11 Identities=45% Similarity=0.588 Sum_probs=5.0
Q ss_pred HHHHHHHHHHH
Q psy10293 61 KKKIEREEERL 71 (179)
Q Consensus 61 ~kkler~e~~l 71 (179)
++|+|++++..
T Consensus 150 ~~k~~~l~~~~ 160 (162)
T PF13019_consen 150 RKKLEKLVEML 160 (162)
T ss_pred HHHHHHHHHHh
Confidence 34445544433
No 249
>KOG4403|consensus
Probab=20.98 E-value=3.6e+02 Score=25.65 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhHHHHHH
Q psy10293 62 KKIEREEERLKNNNKDLTMV 81 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~~~ 81 (179)
|.+|+++.+|+...++|-..
T Consensus 309 kelE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 309 KELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777777888777777643
No 250
>PRK06330 transcript cleavage factor/unknown domain fusion protein; Validated
Probab=20.97 E-value=2.8e+02 Score=27.72 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=34.1
Q ss_pred HHhhccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 25 LLVYRTEKYQKLKTEIEKQME--------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 25 ~Lvyr~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
+.| -.+.|++|++|++.+.. +.++|. |+- +| +.++++..+++.++..+.++|...+
T Consensus 567 ~~v-T~eG~~kLkeEL~~L~~v~rpei~k~I~eAR~~GDL-sENaEY~aAKe~q~~le~RI~~Le~~L~rA~ 636 (718)
T PRK06330 567 LWT-TSESFTRMKNKLQSLVGKEMVENAKEIEDARALGDL-RENSEYKFALEKRARLQEEIRVLSEEINRAR 636 (718)
T ss_pred cee-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHCCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHccCE
Confidence 345 67899999999988843 444443 331 12 1244555566667777777766543
No 251
>KOG2357|consensus
Probab=20.90 E-value=2e+02 Score=26.91 Aligned_cols=14 Identities=14% Similarity=0.064 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q psy10293 14 CTALLSEGLTWLLV 27 (179)
Q Consensus 14 ~t~l~se~ls~~Lv 27 (179)
++..+...+..+++
T Consensus 347 li~ylid~~~~~~l 360 (440)
T KOG2357|consen 347 LIFYLIDKAKKLFL 360 (440)
T ss_pred HHHHHHHHHHhhhc
Confidence 55555555555544
No 252
>PTZ00200 cysteine proteinase; Provisional
Probab=20.90 E-value=57 Score=30.34 Aligned_cols=38 Identities=13% Similarity=0.351 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Q psy10293 7 LIVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQM 44 (179)
Q Consensus 7 ~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ 44 (179)
+.+++.++.++.++.++++||-+...-.+.+.++++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 84 (448)
T PTZ00200 47 ISFLVFLFLAIGGSIVSYVLVSKSKMVKSFKSDLEEHI 84 (448)
T ss_pred HHHHHHHHHHHHhheEEEEEEEehHhHHhHHHHHHHHH
Confidence 34444555566677788888867666666667766663
No 253
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=20.83 E-value=4.9e+02 Score=21.63 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
|+..++.++++..++...+... =+...++.++.+.+...+++.+.
T Consensus 2 K~~~l~~eld~~~~~~~~~~~~---l~~~~~~~~~aE~e~~~l~rri~ 46 (237)
T PF00261_consen 2 KIQQLKDELDEAEERLEEAEEK---LKEAEKRAEKAEAEVASLQRRIQ 46 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777765555443311 11344455566666666666554
No 254
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=20.82 E-value=2.8e+02 Score=28.40 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.|.|++|++|++.+.. +.++|. |+= +| ..++++..++|.++..+.++|...+
T Consensus 753 T~eg~~kL~~EL~~L~~v~Rpei~~~I~~Ar~~GDL-sENaEY~aAKe~q~~le~RI~eLe~~L~~A~ 819 (906)
T PRK14720 753 TRRALNKKKKELEHLKDVEMPENSKDIGEAQELGDL-RENAEYKAAKEKQQQLQAALKRLEAEIDSAK 819 (906)
T ss_pred CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhCCCc-ccchhhHHHHHHHHHHHHHHHHHHHHHhcCE
Confidence 67899999999988832 233433 321 12 1345556667778888888887654
No 255
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=20.69 E-value=3.5e+02 Score=24.39 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=15.1
Q ss_pred hHHHHHHHHHhhhHHHHHHHhCCC
Q psy10293 137 SFIFLYILCTMSIRQNIQKMLGFA 160 (179)
Q Consensus 137 s~i~wYfLcsm~~r~~iqKlLg~~ 160 (179)
.|++ |+=|+.++|.+|-+.=|..
T Consensus 156 f~lv-wyY~tLtiRE~IL~~NGS~ 178 (330)
T PF07851_consen 156 FLLV-WYYCTLTIRESILIVNGSR 178 (330)
T ss_pred HHHH-HHHHHHHHHHHhhccCCCc
Confidence 3344 4568999999887655443
No 256
>PRK02463 OxaA-like protein precursor; Provisional
Probab=20.59 E-value=5.9e+02 Score=22.45 Aligned_cols=26 Identities=8% Similarity=0.083 Sum_probs=14.8
Q ss_pred HhhHHHH-HHh---hhHH----HHHHHHHHHHHH
Q psy10293 73 NNNKDLT-MVK---MKSM----FAIGFAFTALLS 98 (179)
Q Consensus 73 ~~~~~l~-~~k---~k~m----~~~~l~~i~if~ 98 (179)
++++|++ ..+ ..|. .+-+++.+|+|.
T Consensus 118 ~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~ 151 (307)
T PRK02463 118 AAQTELMAAQRENGISMLGGIGCLPLLIQMPFFS 151 (307)
T ss_pred HHHHHHHHHHHHcCCCCccccchHHHHHHHHHHH
Confidence 4455555 222 6666 244667788874
No 257
>KOG1532|consensus
Probab=20.55 E-value=59 Score=29.21 Aligned_cols=9 Identities=33% Similarity=0.482 Sum_probs=3.4
Q ss_pred HHHHhhHHH
Q psy10293 70 RLKNNNKDL 78 (179)
Q Consensus 70 ~l~~~~~~l 78 (179)
+++.+-+++
T Consensus 292 ~le~l~kdm 300 (366)
T KOG1532|consen 292 QLEKLMKDM 300 (366)
T ss_pred hHHHHHhcc
Confidence 344333333
No 258
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=20.52 E-value=1.4e+02 Score=22.38 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHH
Q psy10293 5 TLLIVFISVCTALLSEGLTWLLVYRTEKYQKL 36 (179)
Q Consensus 5 ~l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l 36 (179)
++.|+++.++..++..++.|..+-|+.|....
T Consensus 3 Ll~il~llLll~l~asl~~wr~~~rq~k~~~~ 34 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWRMKQRQKKAGQY 34 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 46788888899999999999999777666555
No 259
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=20.31 E-value=4.1e+02 Score=21.84 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293 23 TWLLVYRTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 23 s~~Lvyr~e~~~~l~~e~~~~~ek~k~ 49 (179)
+.+|--|.-++++|+.++.++..+.++
T Consensus 4 ~rvlSar~~ki~~L~n~l~elq~~l~~ 30 (194)
T PF15619_consen 4 QRVLSARLHKIKELQNELAELQRKLQE 30 (194)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 344444556888999888777555444
No 260
>PRK11778 putative inner membrane peptidase; Provisional
Probab=20.30 E-value=3.9e+02 Score=23.97 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQ 43 (179)
Q Consensus 31 e~~~~l~~e~~~~ 43 (179)
|+|+..++.++..
T Consensus 47 ~~~~~~~~~~~~~ 59 (330)
T PRK11778 47 EQYKEMKEELKAA 59 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666666554
No 261
>PRK09110 flagellar motor protein MotA; Validated
Probab=20.29 E-value=3.3e+02 Score=23.76 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQ 43 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~ 43 (179)
++.|++|.+|.-++.+.+. .+--.|++.+.+++
T Consensus 202 iAvAlv~TlyGi~lAn~i~--~PiA~kl~~~~~~e 234 (283)
T PRK09110 202 IGAALVGTFLGILLAYGFV--GPLAARLEQVVEED 234 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4455556666666666555 34556676665554
No 262
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=20.23 E-value=3.8e+02 Score=20.58 Aligned_cols=37 Identities=14% Similarity=0.316 Sum_probs=16.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERL 71 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l 71 (179)
+.++..++++.+++.+.+.++. ++.-...+.++|+.+
T Consensus 85 ~~edid~~~~~l~~~~~~~~~~------~~~~r~~~~~le~~~ 121 (131)
T PRK06228 85 GGTDLGELREAVEQEFLTLDER------ERSVRSALAKLESGF 121 (131)
T ss_pred chhhHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHH
Confidence 3444545554444443333332 333444556655543
Done!