Query psy10293
Match_columns 179
No_of_seqs 121 out of 141
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:45:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10293.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10293hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_A Vesicle-associated memb 88.2 5.1 0.00017 28.0 10.6 21 29-49 3-23 (91)
2 3eff_K Voltage-gated potassium 71.3 11 0.00038 27.5 6.3 7 63-69 126-132 (139)
3 1ic2_A Tropomyosin alpha chain 63.5 31 0.0011 23.2 6.9 19 31-49 6-24 (81)
4 2lf0_A Uncharacterized protein 60.6 16 0.00054 27.3 5.1 26 57-82 31-56 (123)
5 3lay_A Zinc resistance-associa 59.3 27 0.00093 27.3 6.7 27 57-83 108-134 (175)
6 3sja_C Golgi to ER traffic pro 58.4 21 0.00071 23.8 5.0 48 30-80 5-57 (65)
7 2p4v_A Transcription elongatio 57.6 33 0.0011 26.0 6.8 53 29-82 7-73 (158)
8 2k48_A Nucleoprotein; viral pr 54.0 60 0.0021 23.5 7.5 14 30-43 34-47 (107)
9 2kog_A Vesicle-associated memb 52.9 16 0.00054 26.8 4.1 68 30-98 32-111 (119)
10 3u59_A Tropomyosin beta chain; 51.7 58 0.002 22.7 6.9 20 30-49 8-27 (101)
11 3u1c_A Tropomyosin alpha-1 cha 51.6 59 0.002 22.8 6.9 18 31-48 9-26 (101)
12 3mq7_A Bone marrow stromal ant 50.4 47 0.0016 24.6 6.2 7 67-73 76-82 (121)
13 1gmj_A ATPase inhibitor; coile 45.3 73 0.0025 22.1 6.3 19 60-78 56-74 (84)
14 3n5l_A Binding protein compone 44.3 44 0.0015 27.2 6.0 24 56-79 276-299 (310)
15 2knc_B Integrin beta-3; transm 43.3 57 0.0019 22.1 5.5 12 29-40 40-51 (79)
16 3ljc_A ATP-dependent protease 43.0 72 0.0025 25.4 7.0 12 68-79 238-249 (252)
17 1grj_A GREA protein; transcrip 42.8 83 0.0028 23.7 7.0 53 29-82 7-73 (158)
18 3nmd_A CGMP dependent protein 41.5 69 0.0024 21.6 5.5 43 33-78 21-63 (72)
19 2efr_A General control protein 41.5 1.1E+02 0.0038 23.4 7.4 47 33-82 72-118 (155)
20 3pjs_K KCSA, voltage-gated pot 41.1 33 0.0011 25.8 4.4 7 63-69 153-159 (166)
21 3sjb_C Golgi to ER traffic pro 40.5 95 0.0032 21.9 6.6 49 31-82 23-76 (93)
22 3p7i_A PHND, subunit of alkylp 40.3 43 0.0015 27.6 5.4 24 56-79 285-308 (321)
23 3m9b_A Proteasome-associated A 38.5 64 0.0022 26.8 6.0 11 33-43 56-66 (251)
24 4b6x_A AVRRPS4, avirulence pro 36.9 86 0.0029 21.8 5.5 31 44-79 42-72 (90)
25 1lrz_A FEMA, factor essential 36.2 73 0.0025 27.3 6.3 22 58-79 277-298 (426)
26 1sfc_A VAMP 2, protein (synapt 36.1 1.1E+02 0.0037 21.3 8.0 45 30-77 29-73 (96)
27 3rvy_A ION transport protein; 35.8 30 0.001 27.8 3.7 16 63-78 264-279 (285)
28 2ic6_A Nucleocapsid protein; h 35.6 1.1E+02 0.0036 21.0 7.0 14 30-43 4-17 (78)
29 2f23_A Anti-cleavage anti-GREA 35.2 1.2E+02 0.0042 22.6 6.8 54 29-82 8-73 (156)
30 3vlc_E Golgi to ER traffic pro 34.0 34 0.0012 24.3 3.2 49 31-82 30-83 (94)
31 3twe_A Alpha4H; unknown functi 32.2 47 0.0016 17.9 2.8 7 65-71 11-17 (27)
32 3nmd_A CGMP dependent protein 32.1 1.2E+02 0.004 20.5 6.5 23 59-81 37-59 (72)
33 3vou_A ION transport 2 domain 31.9 1.5E+02 0.005 21.5 8.4 14 61-74 126-139 (148)
34 1yke_B RNA polymerase II holoe 31.8 1.2E+02 0.0041 23.0 6.2 25 56-80 86-110 (151)
35 1ykh_B RNA polymerase II holoe 28.6 1.6E+02 0.0056 21.5 6.4 25 56-80 86-110 (132)
36 2ic9_A Nucleocapsid protein; h 28.3 1.6E+02 0.0055 20.9 6.7 49 30-79 4-62 (96)
37 2fzt_A Hypothetical protein TM 27.3 1.5E+02 0.0051 20.2 6.9 24 59-82 48-71 (79)
38 1tt9_A Formimidoyltransferase- 27.2 3.1E+02 0.011 25.0 9.2 39 9-49 362-400 (541)
39 1gmj_A ATPase inhibitor; coile 25.7 1.7E+02 0.0057 20.3 6.9 13 62-74 65-77 (84)
40 1n7s_A Vesicle-associated memb 25.5 1.3E+02 0.0045 18.9 7.2 19 31-49 4-22 (63)
41 1v54_I STA, cytochrome C oxida 25.4 1.2E+02 0.004 20.4 4.6 44 6-50 18-66 (73)
42 2eqb_B RAB guanine nucleotide 25.0 1.9E+02 0.0064 20.5 6.3 17 63-79 48-64 (97)
43 3oja_B Anopheles plasmodium-re 24.8 1.4E+02 0.0049 26.1 6.4 6 72-77 561-566 (597)
44 2qyw_A Vesicle transport throu 24.8 1.8E+02 0.006 20.3 5.7 16 32-47 23-38 (102)
45 3eff_K Voltage-gated potassium 24.0 2E+02 0.0067 20.5 9.6 8 67-74 123-130 (139)
46 3hnw_A Uncharacterized protein 23.8 2.2E+02 0.0076 21.0 9.2 15 29-43 73-87 (138)
47 1skv_A ORF D-63, hypothetical 23.2 1.7E+02 0.0058 19.4 6.5 38 30-67 8-45 (69)
48 3sde_A Paraspeckle component 1 23.1 2.2E+02 0.0074 22.1 6.6 22 58-79 236-257 (261)
49 1o5h_A Formiminotetrahydrofola 23.1 2.3E+02 0.0077 22.6 6.7 39 9-49 42-80 (214)
50 1pi7_A VPU protein, U ORF prot 23.1 1.2E+02 0.0041 17.7 3.9 27 9-37 7-33 (36)
51 1ik9_A DNA repair protein XRCC 22.0 2.5E+02 0.0086 22.3 6.7 18 59-76 186-203 (213)
52 2pnv_A Small conductance calci 21.8 1.4E+02 0.0048 18.0 4.8 19 61-79 22-40 (43)
53 3b5n_A Synaptobrevin homolog 1 21.8 1.6E+02 0.0053 18.5 7.2 19 31-49 2-20 (61)
54 2wvx_A Mannosidase, putative a 21.2 45 0.0016 31.6 2.4 23 125-149 617-640 (744)
55 2fic_A Bridging integrator 1; 21.0 1.2E+02 0.0041 23.7 4.6 18 62-79 186-203 (251)
56 3caz_A BAR protein; thermo-aci 20.8 1.3E+02 0.0044 24.4 4.7 15 59-73 146-160 (294)
57 4a01_A Proton pyrophosphatase; 20.7 3.1E+02 0.011 26.2 7.9 26 5-30 11-36 (766)
58 3mud_A DNA repair protein XRCC 20.7 3.1E+02 0.01 21.4 7.6 31 20-50 124-154 (175)
59 3ni0_A Bone marrow stromal ant 20.2 2.4E+02 0.0082 20.0 6.1 22 59-80 64-85 (99)
60 1l4a_A Synaptobrevin; snare, s 20.0 1.6E+02 0.0056 19.5 4.5 41 30-73 14-54 (80)
No 1
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=88.17 E-value=5.1 Score=28.02 Aligned_cols=21 Identities=5% Similarity=0.270 Sum_probs=14.2
Q ss_pred ccHHHHHHHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~k~ 49 (179)
..++..++|+++++..+-+.+
T Consensus 3 ~~d~l~~vq~ev~evk~iM~~ 23 (91)
T 3hd7_A 3 HMRRLQQTQAQVDEVVDIMRV 23 (91)
T ss_dssp TTHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 467788888888777444433
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=71.29 E-value=11 Score=27.46 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.9
Q ss_pred HHHHHHH
Q psy10293 63 KIEREEE 69 (179)
Q Consensus 63 kler~e~ 69 (179)
+++++|+
T Consensus 126 ~l~~le~ 132 (139)
T 3eff_K 126 RFDRLER 132 (139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444443
No 3
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=63.47 E-value=31 Score=23.22 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~ 49 (179)
.+++.++.+.+...++...
T Consensus 6 kKm~~lk~e~d~a~~~~~~ 24 (81)
T 1ic2_A 6 KKMQMLKLDKENALDRAEQ 24 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677777776666554433
No 4
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=60.62 E-value=16 Score=27.25 Aligned_cols=26 Identities=8% Similarity=0.068 Sum_probs=20.0
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
.|++...+.+.+++.+.++.++...|
T Consensus 31 ~rgd~~~i~qf~~E~~~l~k~I~~lk 56 (123)
T 2lf0_A 31 LVEAADKYAELEKEKATLEAEIARLR 56 (123)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777788888888888888887655
No 5
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=59.29 E-value=27 Score=27.29 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=21.0
Q ss_pred chhHHHHHHHHHHHHHHhhHHHHHHhh
Q psy10293 57 DKNVKKKIEREEERLKNNNKDLTMVKM 83 (179)
Q Consensus 57 ~k~~~kkler~e~~l~~~~~~l~~~k~ 83 (179)
++.|.+|++++.+++.+++.++...++
T Consensus 108 ~~~DeakI~aL~~Ei~~Lr~qL~~~R~ 134 (175)
T 3lay_A 108 SSPDTAKINAVAKEMESLGQKLDEQRV 134 (175)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788899988889988888885543
No 6
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=58.36 E-value=21 Score=23.78 Aligned_cols=48 Identities=15% Similarity=0.223 Sum_probs=30.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhch-----hHHHHHHHHHHHHHHhhHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDK-----NVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k-----~~~kkler~e~~l~~~~~~l~~ 80 (179)
.+++++++.|+.++..++.... ..|- +-.++++++.++++..++++..
T Consensus 5 ~~~~~~l~~E~~~lk~E~~stS---aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 5 SKKYLAKVKERHELKEFNNSIS---AQDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC---TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3566777777766654444321 1121 5677888888899988888763
No 7
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=57.56 E-value=33 Score=26.03 Aligned_cols=53 Identities=25% Similarity=0.285 Sum_probs=31.9
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhch----hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLDK----NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~k----~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+.. +.++|. |+- +|- ..+++..++|.++..+.+.|...+
T Consensus 7 T~~g~~~L~~EL~~L~~~~R~~i~~~i~~Ar~~GDl-sENaeY~aak~~q~~~e~rI~~L~~~L~~A~ 73 (158)
T 2p4v_A 7 TREGYEKLKQELNYLWREERPEVTKKVTWAASLGDR-SENADYQYNKKRLREIDRRVRYLTKCMENLK 73 (158)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSCT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHCE
T ss_pred cHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCc-ccchhHHHHHHHHHHHHHHHHHHHHHHhhCe
Confidence 46889999999988722 233332 321 121 245555666667777777776533
No 8
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=53.98 E-value=60 Score=23.54 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=10.7
Q ss_pred cHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQ 43 (179)
Q Consensus 30 ~e~~~~l~~e~~~~ 43 (179)
++..++|++|+...
T Consensus 34 M~~ieeLQ~Ei~~~ 47 (107)
T 2k48_A 34 MSTLQELQENITAH 47 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 57888999887554
No 9
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=52.88 E-value=16 Score=26.81 Aligned_cols=68 Identities=10% Similarity=0.243 Sum_probs=33.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhH--------HHH----HHHHHHHHHHhhHHHHHHhhhHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNV--------KKK----IEREEERLKNNNKDLTMVKMKSMFAIGFAFTALL 97 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~--------~kk----ler~e~~l~~~~~~l~~~k~k~m~~~~l~~i~if 97 (179)
.++..++|+++++..+-+.+.. +...+|++ ... -++.+.+=+.+++++-.-++|..++++++.+++.
T Consensus 32 ~d~l~~vq~evdeVk~IM~~NI-dkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 32 NRRLQQTQAQVDEVVDIMRVNV-DKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp CSHHHHSSHHHHHHHHHHHHHH-HHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888777754444422 11112210 000 1122223344555555555777777666666555
Q ss_pred H
Q psy10293 98 S 98 (179)
Q Consensus 98 ~ 98 (179)
+
T Consensus 111 ~ 111 (119)
T 2kog_A 111 I 111 (119)
T ss_dssp H
T ss_pred H
Confidence 4
No 10
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=51.68 E-value=58 Score=22.71 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=11.9
Q ss_pred cHHHHHHHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~ 49 (179)
+.+++.|+.+.++..++...
T Consensus 8 KkKm~~lk~e~e~a~d~ae~ 27 (101)
T 3u59_A 8 KKKMQMLKLDKENAIDRAEQ 27 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35677777666666555433
No 11
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=51.57 E-value=59 Score=22.83 Aligned_cols=18 Identities=28% Similarity=0.468 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKK 48 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k 48 (179)
.+++.|+.+.++..++..
T Consensus 9 kKm~~lk~e~e~a~drae 26 (101)
T 3u1c_A 9 KKMQMLKLDKENALDRAE 26 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 566677766666554443
No 12
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=50.38 E-value=47 Score=24.61 Aligned_cols=7 Identities=14% Similarity=0.183 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy10293 67 EEERLKN 73 (179)
Q Consensus 67 ~e~~l~~ 73 (179)
+|.+++.
T Consensus 76 LqgEI~~ 82 (121)
T 3mq7_A 76 LEGEITT 82 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 13
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=45.33 E-value=73 Score=22.12 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q psy10293 60 VKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 60 ~~kkler~e~~l~~~~~~l 78 (179)
..+.|+++|++++...+.+
T Consensus 56 h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 56 HAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555555555444433
No 14
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=44.25 E-value=44 Score=27.20 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
++..+.+++.++++++.++++.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~ 299 (310)
T 3n5l_A 276 GAEEKAAKLKALDEELAKLEKRMA 299 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999998887776
No 15
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.28 E-value=57 Score=22.11 Aligned_cols=12 Identities=17% Similarity=0.398 Sum_probs=5.4
Q ss_pred ccHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEI 40 (179)
Q Consensus 29 r~e~~~~l~~e~ 40 (179)
|+-.|+|.++|.
T Consensus 40 DrrE~~kFEkE~ 51 (79)
T 2knc_B 40 DRKEFAKFEEER 51 (79)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455444333
No 16
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=43.03 E-value=72 Score=25.39 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=10.3
Q ss_pred HHHHHHhhHHHH
Q psy10293 68 EERLKNNNKDLT 79 (179)
Q Consensus 68 e~~l~~~~~~l~ 79 (179)
+||||++++||+
T Consensus 238 rEQlk~IqkELG 249 (252)
T 3ljc_A 238 NEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 678999999987
No 17
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=42.83 E-value=83 Score=23.65 Aligned_cols=53 Identities=19% Similarity=0.197 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhch----hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLDK----NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~k----~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++.+.. +.+++. |+ ++|- ..+++...+|.++..+.+.|...+
T Consensus 7 T~~g~~~L~~El~~L~~~~rp~i~~~i~~A~~~gD-lsENaeY~aak~~q~~~e~ri~~Le~~L~~a~ 73 (158)
T 1grj_A 7 TLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGD-LKENAEYHAAREQQGFCEGRIKDIEAKLSNAQ 73 (158)
T ss_dssp EHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHHHHHHHhccchhhHhhHHHHHhccc-ccccchhhhHHHHHHHHHHHHHHHHHHHhhCe
Confidence 56889999999988843 223332 22 1121 133444455667777777777644
No 18
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=41.54 E-value=69 Score=21.61 Aligned_cols=43 Identities=12% Similarity=0.322 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHH
Q psy10293 33 YQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 33 ~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l 78 (179)
+.+||..+++..|+++.... .=+..++.++..++++..++.++
T Consensus 21 i~eLq~~L~~K~eELr~kd~---~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDA---LIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566555554443322110 01134455666666666666665
No 19
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=41.47 E-value=1.1e+02 Score=23.41 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 33 YQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 33 ~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~~~k 82 (179)
..+|.++|+.+.+++|++..-. + -..+.+.++|..++.+-++|...|
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~RA--E-~AERsv~kLEk~id~lEd~L~~~K 118 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAETRA--E-FAERSVTKLEKSIDDLEDELYAQK 118 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777777764210 0 233445555555555555554433
No 20
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=41.10 E-value=33 Score=25.80 Aligned_cols=7 Identities=29% Similarity=0.586 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy10293 63 KIEREEE 69 (179)
Q Consensus 63 kler~e~ 69 (179)
+++++|+
T Consensus 153 ~l~~le~ 159 (166)
T 3pjs_K 153 RFDRLER 159 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 21
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=40.54 E-value=95 Score=21.94 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhch-----hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDK-----NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k-----~~~kkler~e~~l~~~~~~l~~~k 82 (179)
.++++++.|+.+...++.... ..|. +-.++++++.++++..+.++.-.+
T Consensus 23 ~~~~~lk~E~~~lk~E~~stS---aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k 76 (93)
T 3sjb_C 23 KKYLAKVKERHELKEFNNSIS---AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 76 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC---TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666655544443321 1121 567889999999999999998654
No 22
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=40.30 E-value=43 Score=27.63 Aligned_cols=24 Identities=8% Similarity=0.054 Sum_probs=19.7
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
++..+.+++.++++++.++++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~ 308 (321)
T 3p7i_A 285 NEQDKLAKTTAIQAQLDDLDRLNN 308 (321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 455778899999999998888776
No 23
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=38.53 E-value=64 Score=26.76 Aligned_cols=11 Identities=18% Similarity=0.407 Sum_probs=4.7
Q ss_pred HHHHHHHHHHH
Q psy10293 33 YQKLKTEIEKQ 43 (179)
Q Consensus 33 ~~~l~~e~~~~ 43 (179)
++.++.+++.+
T Consensus 56 l~eL~~ql~~L 66 (251)
T 3m9b_A 56 IHQLEARIDSL 66 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444333
No 24
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=36.89 E-value=86 Score=21.79 Aligned_cols=31 Identities=23% Similarity=0.429 Sum_probs=18.3
Q ss_pred HHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 44 MEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 44 ~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
-++++++. +.++...+..-+.+|...+.||.
T Consensus 42 t~eLq~A~-----~eaNpaeIA~~~~~L~qAraDL~ 72 (90)
T 4b6x_A 42 TDELQDAI-----DEANPAEIANTSQQLRHARADLA 72 (90)
T ss_dssp HHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HccCHHHHHhHHHHHHHHHHHHH
Confidence 44555544 22555666666667777776665
No 25
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=36.20 E-value=73 Score=27.35 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q psy10293 58 KNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 58 k~~~kkler~e~~l~~~~~~l~ 79 (179)
++.++|++.+++|++...+.+.
T Consensus 277 ~k~~~~~~~~~~~~~~~~~~~~ 298 (426)
T 1lrz_A 277 KKAHNKRDNLQQQLDANEQKIE 298 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777778887776665
No 26
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=36.05 E-value=1.1e+02 Score=21.30 Aligned_cols=45 Identities=9% Similarity=0.342 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHHhhHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKD 77 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~~~~~ 77 (179)
.++..++|+++++..+-+.+.. +...+|+ ++|+.++++=++++.+
T Consensus 29 ~d~l~~vq~eldeVk~IM~~NI-~kvLeRG--EkLd~L~dkse~L~~~ 73 (96)
T 1sfc_A 29 NRRLQQTQAQVDEVVDIMRVNV-DKVLERD--QKLSELDDRADALQAG 73 (96)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHHhh--hHHHHHHHHHHHHHHH
Confidence 5677888888887755555533 2213433 4555544444433333
No 27
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=35.82 E-value=30 Score=27.80 Aligned_cols=16 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhHHH
Q psy10293 63 KIEREEERLKNNNKDL 78 (179)
Q Consensus 63 kler~e~~l~~~~~~l 78 (179)
++++++++++++++++
T Consensus 264 ~~~~l~~~~~~l~~~l 279 (285)
T 3rvy_A 264 EIIKLREEIVELKELI 279 (285)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3444444444444443
No 28
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=35.57 E-value=1.1e+02 Score=21.02 Aligned_cols=14 Identities=7% Similarity=0.230 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQ 43 (179)
Q Consensus 30 ~e~~~~l~~e~~~~ 43 (179)
++..++|++|+..+
T Consensus 4 M~~l~eLq~e~~~~ 17 (78)
T 2ic6_A 4 MSTLKEVQDNITLH 17 (78)
T ss_dssp -CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46788888887555
No 29
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=35.24 E-value=1.2e+02 Score=22.57 Aligned_cols=54 Identities=19% Similarity=0.264 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHHHHHHH-------HHHh--hh--hhhch-hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 29 RTEKYQKLKTEIEKQMEKK-------KEAI--ES--TLLDK-NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~ek~-------k~~~--~~--~~~~k-~~~kkler~e~~l~~~~~~l~~~k 82 (179)
-.+.|++|++|++....++ ++|. |+ ++.+- ..+++..++|.++..+.++|...+
T Consensus 8 T~~g~~~L~~el~~~~~~r~~~~~~i~~A~~~GDlsEnaey~aak~~q~~~e~ri~~L~~~L~~a~ 73 (156)
T 2f23_A 8 TKAGYERLMQQLERERERLQEATKILQELMESSDDYDDSGLEAAKQEKARIEARIDSLEDILSRAV 73 (156)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 5789999999998752222 3332 22 10111 233444455667777777777543
No 30
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=33.97 E-value=34 Score=24.33 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhch-----hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 31 EKYQKLKTEIEKQMEKKKEAIESTLLDK-----NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~~~~~~~~~k-----~~~kkler~e~~l~~~~~~l~~~k 82 (179)
.++++++.|+.++..++.... ..|- +-.++++++.++++..+.+|.-.+
T Consensus 30 ~~~~~lk~E~~~lk~E~~stS---aQDEFAKWAKL~Rk~DKl~~ele~l~~~L~s~k 83 (94)
T 3vlc_E 30 KKYLAKVKERHELKEFNNSIS---AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSEN 83 (94)
T ss_dssp HHHHHHHHHHHHHHHHHTTSC---TTTCHHHHHHHHHHHHHHHHHTTTHHHHTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777666554444321 1121 567788888889998888887443
No 31
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=32.23 E-value=47 Score=17.93 Aligned_cols=7 Identities=57% Similarity=0.691 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy10293 65 EREEERL 71 (179)
Q Consensus 65 er~e~~l 71 (179)
|.+||++
T Consensus 11 edlqerl 17 (27)
T 3twe_A 11 EDLQERL 17 (27)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 32
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.05 E-value=1.2e+02 Score=20.47 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLTMV 81 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~~~ 81 (179)
.++..++.+|.++.+...++.-.
T Consensus 37 ~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 37 QRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777666666644
No 33
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=31.88 E-value=1.5e+02 Score=21.54 Aligned_cols=14 Identities=29% Similarity=0.461 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy10293 61 KKKIEREEERLKNN 74 (179)
Q Consensus 61 ~kkler~e~~l~~~ 74 (179)
.++++++|+++++.
T Consensus 126 ~~rl~~i~~~~~~~ 139 (148)
T 3vou_A 126 MEKLEAIEKKLAEH 139 (148)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 34555555555543
No 34
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=31.82 E-value=1.2e+02 Score=22.97 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=18.9
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++..+.+++.++|+++++.++++..
T Consensus 86 seeeQ~~ri~~Le~E~~~~~~el~~ 110 (151)
T 1yke_B 86 SAEEQLRKIDMLQKKLVEVEDEKIE 110 (151)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788888888888888877763
No 35
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.56 E-value=1.6e+02 Score=21.53 Aligned_cols=25 Identities=12% Similarity=0.138 Sum_probs=19.6
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~~ 80 (179)
++..+.+++.++|++++..++++..
T Consensus 86 see~Q~~ri~~L~~E~~~~~~el~~ 110 (132)
T 1ykh_B 86 SAEEQLRKIDMLQKKLVEVEDEKIE 110 (132)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556888888888888888888763
No 36
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=28.27 E-value=1.6e+02 Score=20.88 Aligned_cols=49 Identities=16% Similarity=0.187 Sum_probs=24.6
Q ss_pred cHHHHHHHHHHHHH-------HHHHHHHh---hhhhhchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 30 TEKYQKLKTEIEKQ-------MEKKKEAI---ESTLLDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 30 ~e~~~~l~~e~~~~-------~ek~k~~~---~~~~~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
++..++|++|+..+ ..|++++. +.. .|--++..+++-+.....++..++
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~D-PDevNk~~~~~R~~~V~~lq~Ki~ 62 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVELD-PDDVNKSTLQSRRAAVSALETKLG 62 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888887555 34555543 211 122344445544444444444444
No 37
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=27.33 E-value=1.5e+02 Score=20.22 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHh
Q psy10293 59 NVKKKIEREEERLKNNNKDLTMVK 82 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~~~k 82 (179)
+++++++++++.+..+.++....+
T Consensus 48 kDk~R~~~Ik~~~~~L~q~a~~~r 71 (79)
T 2fzt_A 48 KDRKRLEIIEKRKTALFQEINVIR 71 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888888888877544
No 38
>1tt9_A Formimidoyltransferase-cyclodeaminase (formiminotransferase- cyclodeaminase) (FTCD)...; hepatitis autoantigen, intermediate channeling; 3.42A {Rattus norvegicus} PDB: 2pfd_A
Probab=27.22 E-value=3.1e+02 Score=25.01 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~ 49 (179)
++-|+.++|.+-+. +|.+.+++|..+.++|++.+++..+
T Consensus 362 l~gAlgaAL~sMVa--nLTiGKkkY~~~e~~m~~i~~~~~~ 400 (541)
T 1tt9_A 362 AVAALGAALASMVG--QMTYGRRQFDHLDSTMRRLIPPFHA 400 (541)
T ss_pred HHHHHHHHHHHHHH--HHhcCccchhhHHHHHHHHHHHHHH
Confidence 34444555544443 3556999999999988887555433
No 39
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=25.73 E-value=1.7e+02 Score=20.26 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q psy10293 62 KKIEREEERLKNN 74 (179)
Q Consensus 62 kkler~e~~l~~~ 74 (179)
+++++....++++
T Consensus 65 ~~i~rhk~~i~~l 77 (84)
T 1gmj_A 65 KEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4455555545444
No 40
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=25.48 E-value=1.3e+02 Score=18.93 Aligned_cols=19 Identities=5% Similarity=0.298 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~ 49 (179)
++..++++++++...-+.+
T Consensus 4 d~l~~v~~~l~ev~~iM~~ 22 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRV 22 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 5677778777776555544
No 41
>1v54_I STA, cytochrome C oxidase polypeptide VIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.3.1 PDB: 1oco_I* 1occ_I* 1ocz_I* 1ocr_I* 1v55_I* 2dyr_I* 2dys_I* 2eij_I* 2eik_I* 2eil_I* 2eim_I* 2ein_I* 2occ_I* 2ybb_T* 2zxw_I* 3abk_I* 3abl_I* 3abm_I* 3ag1_I* 3ag2_I* ...
Probab=25.44 E-value=1.2e+02 Score=20.41 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH---HH--HHHHHHHHHHH
Q psy10293 6 LLIVFISVCTALLSEGLTWLLVYRTEKYQKLK---TE--IEKQMEKKKEA 50 (179)
Q Consensus 6 l~I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~---~e--~~~~~ek~k~~ 50 (179)
-.-++.|+++++.+.++-++++.+. +=+++. .+ ..+..||++++
T Consensus 18 r~~i~~a~~lsl~~~~~~k~~v~~p-RK~aYadFYknYD~~k~ferMk~a 66 (73)
T 1v54_I 18 RFHIVGAFMVSLGFATFYKFAVAEK-RKKAYADFYRNYDSMKDFEEMRKA 66 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHTCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhcCcHHHHHHHHHc
Confidence 3457788888999999999998443 222222 11 23336677664
No 42
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.95 E-value=1.9e+02 Score=20.52 Aligned_cols=17 Identities=6% Similarity=0.200 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhhHHHH
Q psy10293 63 KIEREEERLKNNNKDLT 79 (179)
Q Consensus 63 kler~e~~l~~~~~~l~ 79 (179)
...+++.++++++..|.
T Consensus 48 ~~~~ie~ElEeLTasLF 64 (97)
T 2eqb_B 48 EADKLNKEVEDLTASLF 64 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556665554443
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.82 E-value=1.4e+02 Score=26.14 Aligned_cols=6 Identities=0% Similarity=0.113 Sum_probs=2.2
Q ss_pred HHhhHH
Q psy10293 72 KNNNKD 77 (179)
Q Consensus 72 ~~~~~~ 77 (179)
+++++|
T Consensus 561 ~~l~~e 566 (597)
T 3oja_B 561 AELRQE 566 (597)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 44
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=24.81 E-value=1.8e+02 Score=20.28 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10293 32 KYQKLKTEIEKQMEKK 47 (179)
Q Consensus 32 ~~~~l~~e~~~~~ek~ 47 (179)
.|+.+.+++.+.+++.
T Consensus 23 df~~l~~~i~~kl~~i 38 (102)
T 2qyw_A 23 IFRGLLEDLQGVPERL 38 (102)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555555555554443
No 45
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=24.00 E-value=2e+02 Score=20.46 Aligned_cols=8 Identities=25% Similarity=0.239 Sum_probs=3.0
Q ss_pred HHHHHHHh
Q psy10293 67 EEERLKNN 74 (179)
Q Consensus 67 ~e~~l~~~ 74 (179)
+.+++++.
T Consensus 123 l~~~l~~l 130 (139)
T 3eff_K 123 LHERFDRL 130 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33334433
No 46
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.84 E-value=2.2e+02 Score=21.01 Aligned_cols=15 Identities=20% Similarity=0.302 Sum_probs=8.2
Q ss_pred ccHHHHHHHHHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQ 43 (179)
Q Consensus 29 r~e~~~~l~~e~~~~ 43 (179)
-++.+..|.+++++.
T Consensus 73 ~~~~~~~L~~~l~~~ 87 (138)
T 3hnw_A 73 AKKMADSLSLDIENK 87 (138)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666555443
No 47
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=23.18 E-value=1.7e+02 Score=19.44 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIERE 67 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~ 67 (179)
+|-|..|-+++.+++....+-+.+-..+..++.|+||.
T Consensus 8 ~elF~eLD~diReLLSlvheIKID~It~n~~kekvekA 45 (69)
T 1skv_A 8 KELFEMLDEDVRELLSLIHEIKIDRITGNMDKQKLGKA 45 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeeccCCCHHHHHHH
Confidence 56788888888888777666554322333345555543
No 48
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=23.14 E-value=2.2e+02 Score=22.14 Aligned_cols=22 Identities=14% Similarity=0.359 Sum_probs=13.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHH
Q psy10293 58 KNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 58 k~~~kkler~e~~l~~~~~~l~ 79 (179)
+..++..|+++.+|+....+..
T Consensus 236 ~~~~~~~e~l~~~~~~~~~~~~ 257 (261)
T 3sde_A 236 RNIREAKEKLEAEMEAARHEHQ 257 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHH
Confidence 3445556666777766655544
No 49
>1o5h_A Formiminotetrahydrofolate cyclodeaminase; TM1560, structural genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 2.80A {Thermotoga maritima} SCOP: a.191.1.1
Probab=23.12 E-value=2.3e+02 Score=22.64 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~ 49 (179)
++-|+.++|.+-+. +|.+.+++|..+.+++++.+++..+
T Consensus 42 l~gAlgaAL~~MVa--nLT~gKkky~~~e~~~~~i~~~~~~ 80 (214)
T 1o5h_A 42 VVGAMACALAEMVA--NFTRKKKGYEDVEPEMERIVEAMEE 80 (214)
T ss_dssp HHHHHHHHHHHHHH--HTTTTCTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHhcCccchhhHHHHHHHHHHHHHH
Confidence 33444555544443 3556899999999888888666544
No 50
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=23.08 E-value=1.2e+02 Score=17.66 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccHHHHHHH
Q psy10293 9 VFISVCTALLSEGLTWLLVYRTEKYQKLK 37 (179)
Q Consensus 9 ~~~a~~t~l~se~ls~~Lvyr~e~~~~l~ 37 (179)
..+|+..+++...+-|-.+|+ +|+|++
T Consensus 7 ~ivalivalIiaIVVWtiv~i--eYrk~~ 33 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWSIVII--EGRGGK 33 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 456777888888889998866 355554
No 51
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=21.96 E-value=2.5e+02 Score=22.26 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHhhH
Q psy10293 59 NVKKKIEREEERLKNNNK 76 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~ 76 (179)
.++.||..++.++.+-.+
T Consensus 186 eKK~KIR~lq~~Ll~~~~ 203 (213)
T 1ik9_A 186 EKKTKIRSLHNKLLNAAQ 203 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 456677776666654333
No 52
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=21.82 E-value=1.4e+02 Score=18.00 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHhhHHHH
Q psy10293 61 KKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 61 ~kkler~e~~l~~~~~~l~ 79 (179)
++++..+|.+++.+++.++
T Consensus 22 E~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 22 EKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566666667776666654
No 53
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=21.80 E-value=1.6e+02 Score=18.49 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy10293 31 EKYQKLKTEIEKQMEKKKE 49 (179)
Q Consensus 31 e~~~~l~~e~~~~~ek~k~ 49 (179)
++..++++++++..+-+.+
T Consensus 2 d~l~~vq~~l~evk~iM~~ 20 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRD 20 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 3566777777766554444
No 54
>2wvx_A Mannosidase, putative alpha-1,2-mannosidase; glycoside hydrolase family 92, GH92, hydrolase, BT3990; HET: MSE; 1.90A {Bacteroides thetaiotaomicron} PDB: 2wvz_A* 2ww0_A* 2ww1_A* 2ww3_A* 2wvx_B* 2wzs_A*
Probab=21.17 E-value=45 Score=31.65 Aligned_cols=23 Identities=13% Similarity=0.364 Sum_probs=18.0
Q ss_pred cCCCCCCCCCch-hHHHHHHHHHhhh
Q psy10293 125 HRNLSGEDYTDC-SFIFLYILCTMSI 149 (179)
Q Consensus 125 ~rgL~g~d~td~-s~i~wYfLcsm~~ 149 (179)
-.|++|+| || ....||++.+||+
T Consensus 617 p~GlpGne--D~GqMSAWyVfsalGf 640 (744)
T 2wvx_A 617 PDGYCGDE--DNGQTSAWYVFSALGF 640 (744)
T ss_dssp TTCBSSCC--TTTHHHHHHHHHHHTE
T ss_pred CCCcCCcc--cccHHHHHHHHHHhcC
Confidence 35888887 77 6688999988765
No 55
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=21.03 E-value=1.2e+02 Score=23.75 Aligned_cols=18 Identities=17% Similarity=0.350 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy10293 62 KKIEREEERLKNNNKDLT 79 (179)
Q Consensus 62 kkler~e~~l~~~~~~l~ 79 (179)
++++..+++.+.++++|-
T Consensus 186 ~el~~ak~~ye~ln~~L~ 203 (251)
T 2fic_A 186 EELIKAQKVFEEMNVDLQ 203 (251)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555666666655
No 56
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=20.76 E-value=1.3e+02 Score=24.40 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHH
Q psy10293 59 NVKKKIEREEERLKN 73 (179)
Q Consensus 59 ~~~kkler~e~~l~~ 73 (179)
++.+|++|-|..++.
T Consensus 146 KdSeKI~RNQsKLss 160 (294)
T 3caz_A 146 KDQERIERNQQKFKD 160 (294)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHhhh
Confidence 566677777766653
No 57
>4a01_A Proton pyrophosphatase; hydrolase, membrane protein, proton pumping; HET: DMU; 2.35A {Vigna radiata}
Probab=20.69 E-value=3.1e+02 Score=26.19 Aligned_cols=26 Identities=19% Similarity=0.393 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy10293 5 TLLIVFISVCTALLSEGLTWLLVYRT 30 (179)
Q Consensus 5 ~l~I~~~a~~t~l~se~ls~~Lvyr~ 30 (179)
+.+++.++.+.|++.-+.+|.+|.|-
T Consensus 11 ~~~~i~~~~~~Gi~fa~~~~~~vs~v 36 (766)
T 4a01_A 11 TEILIPVCAVIGIAFALFQWLLVSKV 36 (766)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred hhhHhHHHHHHHHHHHHHHHHheEeE
Confidence 34566678888999999999999554
No 58
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=20.68 E-value=3.1e+02 Score=21.42 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=18.3
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 20 EGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 20 e~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
|+++-++-|--..-.+|+.+++++.|++..+
T Consensus 124 E~ireli~~AertV~kLqkeiD~LEDeL~~e 154 (175)
T 3mud_A 124 EVIRELICYCLDTTAKNEKSIDDLEEKVAHA 154 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444446667777777776666553
No 59
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.19 E-value=2.4e+02 Score=20.02 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHhhHHHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l~~ 80 (179)
++.++++.+|.+++.++++|--
T Consensus 64 ~qq~~v~elqgEI~~Lnq~Lqd 85 (99)
T 3ni0_A 64 EQQARIKELENEVTKLNQELEN 85 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888899998888764
No 60
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=20.05 E-value=1.6e+02 Score=19.49 Aligned_cols=41 Identities=15% Similarity=0.417 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHHHHHHHH
Q psy10293 30 TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKN 73 (179)
Q Consensus 30 ~e~~~~l~~e~~~~~ek~k~~~~~~~~~k~~~kkler~e~~l~~ 73 (179)
.++..++++++++..+-+.+.. +...+|+ ++|+.++++=++
T Consensus 14 ~d~l~~vq~el~ev~~iM~~NI-~~vLeRG--ekLd~L~~kt~~ 54 (80)
T 1l4a_A 14 SKRLQQTQAQVEEVVDIMRVNV-DKVLERD--SKISELDDRADA 54 (80)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHHHHhh--hHHHHHHHHHHH
Confidence 4567788888877755555532 1112333 445554444333
Done!