Query psy10293
Match_columns 179
No_of_seqs 121 out of 141
Neff 5.8
Searched_HMMs 13730
Date Fri Aug 16 22:45:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10293.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10293hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k4ta1 a.2.8.1 (A:641-712) Eu 76.6 5.4 0.00039 25.6 6.8 20 59-78 46-65 (72)
2 d1grja1 a.2.1.1 (A:2-79) GreA 61.9 16 0.0012 23.3 7.0 51 29-80 6-70 (78)
3 d2f23a1 a.2.1.1 (A:3-77) GreA 59.9 16 0.0012 23.1 6.5 51 29-80 6-69 (75)
4 d1lrza1 a.2.7.4 (A:245-309) Me 42.8 33 0.0024 21.0 6.9 24 56-79 31-54 (65)
5 d3b60a2 f.37.1.1 (A:10-328) Mu 40.9 55 0.004 23.1 13.7 11 62-72 219-229 (319)
6 d2hyda2 f.37.1.1 (A:1-323) Put 36.9 65 0.0047 22.8 12.7 15 147-161 308-322 (323)
7 d1ykhb1 a.252.1.1 (B:2-130) RN 30.5 67 0.0049 21.9 6.3 24 56-79 85-108 (129)
8 d2vcha1 c.87.1.10 (A:6-476) Hy 28.2 92 0.0067 23.2 7.5 31 18-50 414-444 (471)
9 d1jb0m_ f.23.19.1 (M:) Subunit 21.7 26 0.0019 18.4 1.9 23 2-26 3-25 (31)
10 d1o5ha_ a.191.1.1 (A:) Hypothe 20.8 83 0.0061 22.8 5.5 41 8-50 28-68 (200)
No 1
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=76.59 E-value=5.4 Score=25.57 Aligned_cols=20 Identities=30% Similarity=0.333 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHHHHHhhHHH
Q psy10293 59 NVKKKIEREEERLKNNNKDL 78 (179)
Q Consensus 59 ~~~kkler~e~~l~~~~~~l 78 (179)
++++++||+++||..+.-+-
T Consensus 46 kKkK~leRL~EQL~KLevqa 65 (72)
T d1k4ta1 46 SKKKAVQRLEEQLMKLEVQA 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 36778999999998776543
No 2
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=61.90 E-value=16 Score=23.25 Aligned_cols=51 Identities=18% Similarity=0.158 Sum_probs=30.5
Q ss_pred ccHHHHHHHHHHHHHHH--------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQME--------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e--------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~ 80 (179)
-.+.|++|++|++.+.+ +.++|. |+- +| ...+++...++.++..+.+.|..
T Consensus 6 T~eg~~~L~~EL~~L~~~~rpei~~~I~~Ar~~GDl-sENaeY~aAKe~q~~~e~RI~eLe~~L~~ 70 (78)
T d1grja1 6 TLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDL-KENAEYHAAREQQGFCEGRIKDIEAKLSN 70 (78)
T ss_dssp EHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTCCG-GGCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 36899999999987632 233433 321 11 13455555666677777777654
No 3
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=59.89 E-value=16 Score=23.05 Aligned_cols=51 Identities=22% Similarity=0.350 Sum_probs=30.2
Q ss_pred ccHHHHHHHHHHHHHHH-------HHHHHh--hhhhhc----hhHHHHHHHHHHHHHHhhHHHHH
Q psy10293 29 RTEKYQKLKTEIEKQME-------KKKEAI--ESTLLD----KNVKKKIEREEERLKNNNKDLTM 80 (179)
Q Consensus 29 r~e~~~~l~~e~~~~~e-------k~k~~~--~~~~~~----k~~~kkler~e~~l~~~~~~l~~ 80 (179)
-.+.|++|++|++.+.. +.++|. |+- +| ...+++...++.++..+.+.|..
T Consensus 6 T~eg~~kL~~EL~~l~~~r~ei~~~I~eAr~~GDl-~ENaeY~aAke~q~~~e~rI~eLe~~L~~ 69 (75)
T d2f23a1 6 TKAGYERLMQQLERERERLQEATKILQELMESSDD-YDDSGLEAAKQEKARIEARIDSLEDILSR 69 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCC-SCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-ccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999987622 223332 321 11 13455556666677777777654
No 4
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=42.75 E-value=33 Score=21.02 Aligned_cols=24 Identities=17% Similarity=0.340 Sum_probs=15.6
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
..++...++..++.|+...++.+.
T Consensus 31 ~skK~~nk~~el~~Q~~s~~~ki~ 54 (65)
T d1lrza1 31 ENKKAHNKRDNLQQQLDANEQKIE 54 (65)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666667777777777666554
No 5
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=40.90 E-value=55 Score=23.07 Aligned_cols=11 Identities=9% Similarity=0.598 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q psy10293 62 KKIEREEERLK 72 (179)
Q Consensus 62 kkler~e~~l~ 72 (179)
++.++..++..
T Consensus 219 ~~~~~~~~~~~ 229 (319)
T d3b60a2 219 KRFDKVSNKMR 229 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred hhhhhhhhhhh
Confidence 33333333333
No 6
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=36.95 E-value=65 Score=22.76 Aligned_cols=15 Identities=0% Similarity=0.020 Sum_probs=7.8
Q ss_pred hhhHHHHHHHhCCCC
Q psy10293 147 MSIRQNIQKMLGFAP 161 (179)
Q Consensus 147 m~~r~~iqKlLg~~~ 161 (179)
.+.-.-+..+|+.+|
T Consensus 308 ~~s~~Ri~elLd~e~ 322 (323)
T d2hyda2 308 FASMDRVFQLIDEDY 322 (323)
T ss_dssp HHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHCCCC
Confidence 333344556666554
No 7
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=30.51 E-value=67 Score=21.88 Aligned_cols=24 Identities=13% Similarity=0.172 Sum_probs=18.4
Q ss_pred hchhHHHHHHHHHHHHHHhhHHHH
Q psy10293 56 LDKNVKKKIEREEERLKNNNKDLT 79 (179)
Q Consensus 56 ~~k~~~kkler~e~~l~~~~~~l~ 79 (179)
++..+.+++.++|+++....+++.
T Consensus 85 see~Q~~~i~~Le~E~~~~~~el~ 108 (129)
T d1ykhb1 85 SAEEQLRKIDMLQKKLVEVEDEKI 108 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355688888888888888877765
No 8
>d2vcha1 c.87.1.10 (A:6-476) Hydroquinone glucosyltransferase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=28.18 E-value=92 Score=23.21 Aligned_cols=31 Identities=10% Similarity=0.150 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 18 LSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 18 ~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
+.+.+..+| +.|++++++++..++-|+.++|
T Consensus 414 l~~ai~~vl--~~~~~~~~r~ra~~l~e~~~~a 444 (471)
T d2vcha1 414 VARVVKGLM--EGEEGKGVRNKMKELKEAACRV 444 (471)
T ss_dssp HHHHHHHHH--TSTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCcHHHHHHHHHHHHHHHHHHH
Confidence 344556655 5677888888888887777776
No 9
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=21.73 E-value=26 Score=18.39 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=14.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH
Q psy10293 2 WADTLLIVFISVCTALLSEGLTWLL 26 (179)
Q Consensus 2 ~~d~l~I~~~a~~t~l~se~ls~~L 26 (179)
++|+-+. +|++.+++--++.|.|
T Consensus 3 lsdtqv~--valvial~pg~lafrl 25 (31)
T d1jb0m_ 3 LTDTQVY--VALVIALLPAVLAFRL 25 (31)
T ss_dssp CCHHHHH--HHHHHHHHHHHHHHHH
T ss_pred chHHHHH--HHHHHHHHHHHHHHHH
Confidence 4566544 4556677777777777
No 10
>d1o5ha_ a.191.1.1 (A:) Hypothetical protein TM1560 {Thermotoga maritima [TaxId: 2336]}
Probab=20.77 E-value=83 Score=22.79 Aligned_cols=41 Identities=22% Similarity=0.299 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Q psy10293 8 IVFISVCTALLSEGLTWLLVYRTEKYQKLKTEIEKQMEKKKEA 50 (179)
Q Consensus 8 I~~~a~~t~l~se~ls~~Lvyr~e~~~~l~~e~~~~~ek~k~~ 50 (179)
-++-|+.++|.+-+.+ |-.++++|+.+.+++++..++..+.
T Consensus 28 Al~galg~aL~~MVa~--lT~~kk~~~~~~~~~~~~~~~~~~~ 68 (200)
T d1o5ha_ 28 SVVGAMACALAEMVAN--FTRKKKGYEDVEPEMERIVEAMEEA 68 (200)
T ss_dssp HHHHHHHHHHHHHHHH--TTTTCTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH--HhcCccchhhHHHHHHHHHHHHHHH
Confidence 3445555555544433 3347888998888888886666553
Done!