RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10293
         (179 letters)



>d2iy5a1 a.2.7.2 (A:15-84) Phenylalanyl-tRNA synthetase (PheRS)
          {Thermus thermophilus [TaxId: 274]}
          Length = 70

 Score = 25.8 bits (57), Expect = 0.81
 Identities = 6/31 (19%), Positives = 18/31 (58%)

Query: 32 KYQKLKTEIEKQMEKKKEAIESTLLDKNVKK 62
          +   +K  +E  +E +++A+E   L + +++
Sbjct: 39 ELNAIKAALEAALEAREKALEEAALKEALER 69


>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein,
          N-terminal domain {Thermus thermophilus [TaxId: 274]}
          Length = 75

 Score = 25.5 bits (56), Expect = 1.5
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 31 EKYQKLKTEIEKQMEKKKEAIES 53
            Y++L  ++E++ E+ +EA + 
Sbjct: 8  AGYERLMQQLERERERLQEATKI 30


>d2qzga1 a.29.14.1 (A:4-91) Uncharacterized protein MMP1188
          {Methanococcus maripaludis [TaxId: 39152]}
          Length = 88

 Score = 25.1 bits (55), Expect = 2.1
 Identities = 7/42 (16%), Positives = 20/42 (47%)

Query: 37 KTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDL 78
            +++      +E +E T + +N++   +  +  L N  ++L
Sbjct: 7  ADKLKNISSMLEEIVEDTTVPRNIRAAADNAKNALHNEEQEL 48


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 26.4 bits (58), Expect = 2.6
 Identities = 8/61 (13%), Positives = 17/61 (27%), Gaps = 6/61 (9%)

Query: 53  STLLDKNVKKKIEREEERL--KNNNKDLTMVKMKSMFAIGFAFTALLSMFNTIFDGKIVA 110
               D+   + I+ +   L   N    L  +K+ +              F+   +   V 
Sbjct: 538 DFNFDQQTSQNIKNQLAELNATNIYTVLDKIKLNA----KMNILIRDKRFHYDRNNIAVG 593

Query: 111 K 111
            
Sbjct: 594 A 594


>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
           cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 268

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 5/47 (10%)

Query: 30  TEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNK 76
            EK  + + E +  +EK K A     + +    ++ R  E LK   +
Sbjct: 214 PEKATQEEVEEKNILEKVKAA-----MTEEDLAELARATEELKLKQE 255


>d2qsba1 a.29.14.1 (A:2-86) Uncharacterized protein Ta0600
          {Thermoplasma acidophilum [TaxId: 2303]}
          Length = 85

 Score = 24.3 bits (53), Expect = 4.5
 Identities = 9/40 (22%), Positives = 17/40 (42%)

Query: 40 IEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLT 79
            + M    E  +   + KNV+K  +  + +L   N+ L 
Sbjct: 8  FNEVMYLLDELSQDITVPKNVRKVAQDSKAKLSQENESLD 47


>d1jqga2 d.58.3.1 (A:4P-100P) Procarboxypeptidase A {Cotton
          bollworm (Helicoverpa armigera) [TaxId: 29058]}
          Length = 92

 Score = 24.0 bits (52), Expect = 6.1
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 47 KKEAIESTLLDKNVKKKIEREEERLKNNNK 76
          K+  ++  L  +NVK+++E E++ L     
Sbjct: 61 KQSGVQYKLEVENVKEQLELEDQLLAAAAA 90


>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
           {Plasmodium falciparum [TaxId: 5833]}
          Length = 314

 Score = 24.6 bits (53), Expect = 7.3
 Identities = 7/49 (14%), Positives = 20/49 (40%)

Query: 29  RTEKYQKLKTEIEKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKD 77
           + E+Y K   + ++  +     + S       +  +++  E+  N N +
Sbjct: 250 KKEEYNKQAKQYQEYQKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFE 298


>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
          dispensable insert domain {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 72

 Score = 23.2 bits (50), Expect = 8.0
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 41 EKQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSM 86
          EK M   +  I++    K       R+ +  K + K +   K K +
Sbjct: 1  EKSMMNLQTKIDAK---KEQLADARRDLKSAKADAKVMKDAKTKKV 43


>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase
          kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId:
          9986]}
          Length = 277

 Score = 24.3 bits (52), Expect = 9.5
 Identities = 5/46 (10%), Positives = 20/46 (43%)

Query: 42 KQMEKKKEAIESTLLDKNVKKKIEREEERLKNNNKDLTMVKMKSMF 87
          K ++       S    + +++   +E + L+  +    ++++K  +
Sbjct: 34 KIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY 79


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.393 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 632,665
Number of extensions: 27733
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 30
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.2 bits)