Query psy10294
Match_columns 226
No_of_seqs 258 out of 1582
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 22:47:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10294.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10294hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 99.8 3E-20 1E-24 162.1 14.3 182 3-199 287-477 (491)
2 2gfp_A EMRD, multidrug resista 99.6 4.4E-16 1.5E-20 131.3 6.7 151 10-166 17-168 (375)
3 1pw4_A Glycerol-3-phosphate tr 99.6 9.4E-16 3.2E-20 131.8 7.8 154 10-166 45-200 (451)
4 3o7q_A L-fucose-proton symport 99.6 9.6E-15 3.3E-19 125.2 11.0 151 10-166 43-223 (438)
5 4aps_A DI-OR tripeptide H+ sym 99.5 1.6E-14 5.4E-19 125.9 8.4 153 8-166 28-190 (491)
6 4gc0_A D-xylose-proton symport 99.4 4.4E-13 1.5E-17 116.6 11.3 117 30-146 58-186 (491)
7 2xut_A Proton/peptide symporte 99.4 1.3E-12 4.5E-17 114.7 12.1 153 9-166 28-192 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.4 1.3E-12 4.4E-17 112.2 8.5 155 8-166 267-427 (451)
9 3o7q_A L-fucose-proton symport 99.2 6.1E-10 2.1E-14 95.1 14.0 147 10-165 275-425 (438)
10 2cfq_A Lactose permease; trans 99.1 2.7E-11 9.3E-16 103.8 5.2 130 31-166 263-393 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.0 4.4E-10 1.5E-14 97.7 5.0 154 11-166 301-465 (491)
12 2cfq_A Lactose permease; trans 98.7 4.6E-10 1.6E-14 96.1 -2.5 149 9-161 23-176 (417)
13 2gfp_A EMRD, multidrug resista 98.4 2E-08 6.9E-13 84.1 -2.1 140 11-157 217-361 (375)
14 2xut_A Proton/peptide symporte 98.1 9.1E-07 3.1E-11 77.3 3.0 45 103-147 422-466 (524)
15 2g9p_A Antimicrobial peptide l 47.5 8.8 0.0003 18.0 1.2 14 46-59 2-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.84 E-value=3e-20 Score=162.09 Aligned_cols=182 Identities=21% Similarity=0.261 Sum_probs=143.9
Q ss_pred cccccccceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcC
Q psy10294 3 PGFNSSFVSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNL 81 (226)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~ 81 (226)
+++.++.+.+..|.|.+.++.+.+. +.........+...++.++++++.||+|||+.++.+...+.+..+.... ....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~-~~~~ 365 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGT-AFYT 365 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHH-HHHT
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHH-HHhc
Confidence 4566778888899999999988876 5556677888889999999999999999999999888887774433333 1222
Q ss_pred CCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH------hhchhhHH
Q psy10294 82 HWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT------WFGLHGTL 155 (226)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~g~~~~~ 155 (226)
....+..+.....+..+++.+.+++.+.+.+|++|++.|+++.|+....+++++++++.+.+.+.+ ..++...+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~ 445 (491)
T 4gc0_A 366 QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSY 445 (491)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 344455555555666667777888999999999999999999999999999999999988876643 34455678
Q ss_pred HHHHHHHHHhhhhhhcccccccccceeEEEEecc--CCCHHHHhhh
Q psy10294 156 FIYSFITGIGFAIRIRGVACGICAAINSIVCFLV--TKTYIGIDWH 199 (226)
Q Consensus 156 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~e--~~~~~~~~~~ 199 (226)
+++++++++.. +..++++|| +|++||+|+.
T Consensus 446 ~i~~~~~~~~~--------------i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 446 WIYGCMGVLAA--------------LFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHH--------------HHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHH--------------HHHHheecCCCCCCHHHHHHH
Confidence 88888888877 666778999 8999999887
No 2
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.62 E-value=4.4e-16 Score=131.29 Aligned_cols=151 Identities=10% Similarity=-0.028 Sum_probs=118.7
Q ss_pred ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294 10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP 88 (226)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (226)
....+..|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.+..+..+..+....... .++...
T Consensus 17 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~------~~~~~~ 90 (375)
T 2gfp_A 17 TIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT------TSSLTV 90 (375)
T ss_dssp HHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH------HHHHHH
T ss_pred HHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH------hccHHH
Confidence 345566788888999988 6788889999999999999999999999999999988888874443333 122333
Q ss_pred HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294 89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 166 (226)
+.......+.......+....+++|.+|+++|+++.++.+....++..+++.+.+.+.++.+||..+++.+....+..
T Consensus 91 l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (375)
T 2gfp_A 91 LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVT 168 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 333333333333334566677899999999999999999999999999999999998888899999998888877776
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.60 E-value=9.4e-16 Score=131.80 Aligned_cols=154 Identities=6% Similarity=-0.005 Sum_probs=116.0
Q ss_pred ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHH
Q psy10294 10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP 88 (226)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 88 (226)
....+++|.+.+++ .+. +.++..+...++..++.++.|+++||+|||+.++++..+..+..+........ ..+...
T Consensus 45 ~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~ 121 (451)
T 1pw4_A 45 KNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAV 121 (451)
T ss_dssp TSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSH
T ss_pred HHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhc--cccHHH
Confidence 34556688888888 887 78888999999999999999999999999999999988888733332220000 012222
Q ss_pred HHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHhh
Q psy10294 89 LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGIGF 166 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~~ 166 (226)
+.....+.+.......+....+++|.+|+++|+++.++......+|..+++.+.+.+.+..| ||+.+++.+++..+..
T Consensus 122 l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~ 200 (451)
T 1pw4_A 122 MFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200 (451)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 22223333332223446667899999999999999999999999999999999999888898 9999998888776655
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.57 E-value=9.6e-15 Score=125.15 Aligned_cols=151 Identities=7% Similarity=-0.082 Sum_probs=115.3
Q ss_pred ceecccHHHHHhhcCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHH---HHHhhcCCCch
Q psy10294 10 VSMRPYLVEIFQTFGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL---AICSMNLHWPG 85 (226)
Q Consensus 10 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~~~~ 85 (226)
....+..|.+.+++|.+. +..+..+...++..++.++.|+++||+|||+.++.+..+..+..+.. .. .++
T Consensus 43 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~ 116 (438)
T 3o7q_A 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE------IMN 116 (438)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH------TTC
T ss_pred HhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc------ccc
Confidence 345567888889999998 77888999999999999999999999999999999999888844443 22 223
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhc--------------
Q psy10294 86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI-TWFG-------------- 150 (226)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g-------------- 150 (226)
...+.....+.+.......+....+++|++|+++|+++.++.+....+|..+++.+.+.+. +..+
T Consensus 117 ~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 196 (438)
T 3o7q_A 117 YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcch
Confidence 3333333333333233344566789999999999999999999999999999999988887 4443
Q ss_pred -----------hhhHHHHHHHHHHHhh
Q psy10294 151 -----------LHGTLFIYSFITGIGF 166 (226)
Q Consensus 151 -----------~~~~~~~~~~~~~i~~ 166 (226)
||+.+++.+....+..
T Consensus 197 ~~~~~~~~~~~w~~~~~~~~~~~~~~~ 223 (438)
T 3o7q_A 197 LSAYKHSLVLSVQTPYMIIVAIVLLVA 223 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 8888877776655544
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.53 E-value=1.6e-14 Score=125.89 Aligned_cols=153 Identities=14% Similarity=0.161 Sum_probs=113.3
Q ss_pred ccceecccHHHHHhh------cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhh
Q psy10294 8 SFVSMRPYLVEIFQT------FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNK-FGKRPMSLWSTGICFVFTIALAICSM 79 (226)
Q Consensus 8 ~~~~~~~~~~~~~~~------~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~-~Grr~~~~~~~~~~~i~~~~~~~~~~ 79 (226)
+.+.+..+++.+.++ +|.+. +..+..+...++..++++++|+++|| +|||+++..+..+..+..+....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 344455556666554 78887 67888899999999999999999999 89999999998888774443333
Q ss_pred cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294 80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRI--RGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI 157 (226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 157 (226)
..+.+.... ...+.+.......+....+++|++|+++ |+++.++.+....+|..+++.+.+.+.++.||++.|++
T Consensus 105 --~~~~~~~~~-~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~ 181 (491)
T 4aps_A 105 --PFGASALFG-SIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSL 181 (491)
T ss_dssp --CCSTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred --hhhHHHHHH-HHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 122222222 2322222222344666789999999988 77788888899999999999999999999999999988
Q ss_pred HHHHHHHhh
Q psy10294 158 YSFITGIGF 166 (226)
Q Consensus 158 ~~~~~~i~~ 166 (226)
.+....+..
T Consensus 182 ~~~~~~~~~ 190 (491)
T 4aps_A 182 AAIGMFIGL 190 (491)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766665554
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.44 E-value=4.4e-13 Score=116.65 Aligned_cols=117 Identities=17% Similarity=0.082 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhc------------CCCchHHHHHHHHHHHH
Q psy10294 30 EWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMN------------LHWPGWIPLTIFCICFW 97 (226)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~ 97 (226)
++..+...++..+|++++|+++||+|||++++++.++..+..+........ ....+...+...+++.+
T Consensus 58 g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G 137 (491)
T 4gc0_A 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGG 137 (491)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHH
Confidence 355667788899999999999999999999999998888744433320000 00223444444444444
Q ss_pred HHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294 98 ISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSI 146 (226)
Q Consensus 98 ~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (226)
....+..+...++++|..|+++|++..++.+.....+..+++.+.....
T Consensus 138 ~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~ 186 (491)
T 4gc0_A 138 IGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIA 186 (491)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhc
Confidence 4333445677889999999999999999999888888887777665554
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.41 E-value=1.3e-12 Score=114.71 Aligned_cols=153 Identities=17% Similarity=0.079 Sum_probs=112.8
Q ss_pred cceecccHHHHHh-hcC------CCc-hHHHHHHHHHHHHHHHHHHHHHHhccc-CChHHHHHHHHHHHHHHHHHHHHhh
Q psy10294 9 FVSMRPYLVEIFQ-TFG------VPL-KSEWVLVLTGVLAITGSLVSSLTVNKF-GKRPMSLWSTGICFVFTIALAICSM 79 (226)
Q Consensus 9 ~~~~~~~~~~~~~-~~g------~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~-Grr~~~~~~~~~~~i~~~~~~~~~~ 79 (226)
.+.+..++|.+.+ ++| .+. +..+......++..++.+++|+++||+ |||+++..+..+..+..+....
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAI--- 104 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---
Confidence 3445566666654 578 887 778888899999999999999999999 9999999888887774444444
Q ss_pred cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHH---HHHHHHHHHHHHHHHHHHHHHhhchhhHHH
Q psy10294 80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGI---CAAINSIVCFLVTKTYVTSITWFGLHGTLF 156 (226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 156 (226)
...+...+.....+.+.......+....+++|.+|+++|+++.+. .+....+|..+++.+.+.+.+..||++.|+
T Consensus 105 --~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~ 182 (524)
T 2xut_A 105 --FEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFG 182 (524)
T ss_dssp --TSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHH
T ss_pred --hcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 121222233233332322233446667889999999999877666 888889999999999999888899999988
Q ss_pred HHHHHHHHhh
Q psy10294 157 IYSFITGIGF 166 (226)
Q Consensus 157 ~~~~~~~i~~ 166 (226)
+.+...++..
T Consensus 183 ~~~~~~~~~~ 192 (524)
T 2xut_A 183 IPGVLMFVAT 192 (524)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777665544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=1.3e-12 Score=112.16 Aligned_cols=155 Identities=16% Similarity=0.159 Sum_probs=113.5
Q ss_pred ccceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhccc--CChHHHHHHHHHHHH-HHHHHHHHhhcCC
Q psy10294 8 SFVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKF--GKRPMSLWSTGICFV-FTIALAICSMNLH 82 (226)
Q Consensus 8 ~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~--Grr~~~~~~~~~~~i-~~~~~~~~~~~~~ 82 (226)
+.+.+..+.|.+.++ +|.+. +..+......++.+++.++.+++.||+ |||+.+..+..+... ..+.... ...
T Consensus 267 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 343 (451)
T 1pw4_A 267 LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NPA 343 (451)
T ss_dssp HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CCT
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hcc
Confidence 345567788888887 78887 667788888899999999999999999 999988877666553 2222111 111
Q ss_pred CchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHH-HHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294 83 WPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSI-VCFLVTKTYVTSITWFGLHGTLFIYSFI 161 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 161 (226)
...+.........+. ...+..+..+.+..|.+|++.|+++.|+.+....+ +..+++.+.+.+.+..|++..+++.+++
T Consensus 344 ~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 422 (451)
T 1pw4_A 344 GNPTVDMICMIVIGF-LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGG 422 (451)
T ss_dssp TCHHHHHHHHHHHHH-HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHH-HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 122222222222222 22233455567899999999999999999999999 9999999999999999998888887777
Q ss_pred HHHhh
Q psy10294 162 TGIGF 166 (226)
Q Consensus 162 ~~i~~ 166 (226)
.++..
T Consensus 423 ~~~~~ 427 (451)
T 1pw4_A 423 SILAV 427 (451)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76665
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.15 E-value=6.1e-10 Score=95.12 Aligned_cols=147 Identities=13% Similarity=0.077 Sum_probs=107.3
Q ss_pred ceecccHHHH-Hhhc-CCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchH
Q psy10294 10 VSMRPYLVEI-FQTF-GVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW 86 (226)
Q Consensus 10 ~~~~~~~~~~-~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 86 (226)
..+..+.|.+ .++. |.+. +.........++..++.++.++++||+|||+.+..+..+..+..+.... .+..
T Consensus 275 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~ 348 (438)
T 3o7q_A 275 TACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF------AGGH 348 (438)
T ss_dssp HHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CCHH
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH------cCCc
Confidence 3455778888 7764 8887 6677788888999999999999999999999998888777764444444 1222
Q ss_pred HHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-hhhHHHHHHHHHHHh
Q psy10294 87 IPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG-LHGTLFIYSFITGIG 165 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~i~ 165 (226)
.........+.+.+ ...+..+.+..|.+|++ |+++.++.. .+.+++.++|.+.+.+.+..| ++..+++.+....+.
T Consensus 349 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 425 (438)
T 3o7q_A 349 VGLIALTLCSAFMS-IQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_dssp HHHHHHHHHHHHHT-THHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 22333333333332 34466777878999977 888888877 677999999999999999998 888777655544443
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.14 E-value=2.7e-11 Score=103.83 Aligned_cols=130 Identities=12% Similarity=0.157 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHhccccchhhHH
Q psy10294 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWML 110 (226)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (226)
....+..+...++.++.++++||+|||+.+..+..+..+....... ..+.+.............+ ...+..+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 336 (417)
T 2cfq_A 263 YVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----ATSALEVVILKTLHMFEVP-FLLVGCFKY 336 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----CCSHHHHHHHTTHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4455666677889999999999999999988777666553222222 1222222222222222211 222345678
Q ss_pred hhccCCcchhhhHHHHH-HHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHhh
Q psy10294 111 MSEIFPVRIRGVACGIC-AAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGF 166 (226)
Q Consensus 111 ~~e~~p~~~R~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 166 (226)
++|.+|++.|+++.++. +....+++.++|.+.+.+.+..|++..|...+.+.++..
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~ 393 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 99999999999999985 777889999999999999888888777877777766665
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=98.96 E-value=4.4e-10 Score=97.68 Aligned_cols=154 Identities=7% Similarity=-0.055 Sum_probs=96.2
Q ss_pred eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHH-----HHHHHHHHHHHHHHHHh-h---
Q psy10294 11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSL-----WSTGICFVFTIALAICS-M--- 79 (226)
Q Consensus 11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~-----~~~~~~~i~~~~~~~~~-~--- 79 (226)
....+.|.+.++ .+.+. +.........+...++.++.+++.||+|||+... .+..+..+......... .
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (491)
T 4aps_A 301 QGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT 380 (491)
T ss_dssp GGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC
T ss_pred hccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556666665 45553 4556667778888888999999999999987654 44444444221111100 0
Q ss_pred cCCCchHHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHH
Q psy10294 80 NLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYS 159 (226)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 159 (226)
....+.+.........+.+. ....+..+.++.|.+|++.|+++.|+.+....++..+++.+.+.+.+. ++...+...+
T Consensus 381 ~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~ 458 (491)
T 4aps_A 381 SGKVSPLWLVGSWALVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFG 458 (491)
T ss_dssp CTTCCTHHHHHHHHHHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTH
T ss_pred CCCccHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 01112223332233322222 233566778999999999999999999999999999999988776543 5556677666
Q ss_pred HHHHHhh
Q psy10294 160 FITGIGF 166 (226)
Q Consensus 160 ~~~~i~~ 166 (226)
.+..+..
T Consensus 459 ~~~~~~~ 465 (491)
T 4aps_A 459 LGSVVLG 465 (491)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 12
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.73 E-value=4.6e-10 Score=96.14 Aligned_cols=149 Identities=11% Similarity=0.017 Sum_probs=87.5
Q ss_pred cceecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHH-hhcCCCch
Q psy10294 9 FVSMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAIC-SMNLHWPG 85 (226)
Q Consensus 9 ~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~~~i~~~~~~~~-~~~~~~~~ 85 (226)
.....+++|.+.++ +|.+. +..+..+...++..++++++|+++||+|||++++++..+..+........ ........
T Consensus 23 ~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (417)
T 2cfq_A 23 MGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYN 102 (417)
T ss_dssp HHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446788887765 79887 77888889999999999999999999999999988777665411111100 00000000
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHhhccCCc--chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q psy10294 86 WIPLTIFCICFWISGYGILALPWMLMSEIFPV--RIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFI 161 (226)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 161 (226)
.. ..........+.... .......+..++ +.|+.+.+.....+.+|..++|.+.+++.+ .+|+..|++.+..
T Consensus 103 ~~--~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~ 176 (417)
T 2cfq_A 103 IL--VGSIVGGIYLGFCFN-AGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC 176 (417)
T ss_dssp CC--HHHHGGGSSTTHHHH-TTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred HH--HHHHHHHHHHHHHHh-hhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence 00 000000000111111 111122233322 456666777777778888888988888776 4788776654443
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.37 E-value=2e-08 Score=84.10 Aligned_cols=140 Identities=13% Similarity=0.077 Sum_probs=87.0
Q ss_pred eecccHHHHHhh-cCCCc-hHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHH-HHH--HHHHHHHHhhcCCCch
Q psy10294 11 SMRPYLVEIFQT-FGVPL-KSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI-CFV--FTIALAICSMNLHWPG 85 (226)
Q Consensus 11 ~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~~~l~d~~Grr~~~~~~~~~-~~i--~~~~~~~~~~~~~~~~ 85 (226)
....+.|.+.++ .|.+. +.........++..++.++.+++.||+|||. ..+... ... ....... . . ..+.
T Consensus 217 ~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~-~-~-~~~~ 291 (375)
T 2gfp_A 217 AFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDW-F-G-VMNV 291 (375)
T ss_dssp HHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHH-H-H-HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-h-c-cccH
Confidence 344556666555 56665 4566677778888889999999999988732 223322 111 1111111 0 0 0112
Q ss_pred HHHHHHHHHHHHHHhccccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhHHHH
Q psy10294 86 WIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFGLHGTLFI 157 (226)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 157 (226)
+.........+.+.+ ...+....+..|..| ++|+++.|+.+....++..+++.+.+.+.+..+++..+..
T Consensus 292 ~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 292 WTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 222222233333333 234666778889998 8999999999999999999999998888877777655444
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=98.13 E-value=9.1e-07 Score=77.32 Aligned_cols=45 Identities=11% Similarity=0.059 Sum_probs=39.4
Q ss_pred ccchhhHHhhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy10294 103 ILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT 147 (226)
Q Consensus 103 ~~~~~~~~~~e~~p~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (226)
..+..+.+..|..|++.|+++.|+.+....+++.+++.+.+.+.+
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~ 466 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKS 466 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345666788999999999999999999999999999999887765
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=47.47 E-value=8.8 Score=18.00 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=11.0
Q ss_pred HHHHHhcccCChHH
Q psy10294 46 VSSLTVNKFGKRPM 59 (226)
Q Consensus 46 ~~~~l~d~~Grr~~ 59 (226)
++|.+..+||||..
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 35778899999865
Done!