RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10294
(226 letters)
>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family. This
model represent the sugar porter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 481
Score = 65.4 bits (160), Expect = 2e-12
Identities = 38/162 (23%), Positives = 69/162 (42%), Gaps = 10/162 (6%)
Query: 15 YLVEIFQTFGV-PLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
Y IF+ GV + V ++ G + + V+ V++FG+RP+ L +
Sbjct: 306 YSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFV 365
Query: 74 LAICSMNLHWP-----GWIPLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACGI 126
L I + G + I I +I+ + G +PW+++SEIFP+ +R I
Sbjct: 366 LGILGASFVTGSSKSSGNVA--IVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISI 423
Query: 127 CAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAI 168
A N + F+V + T + G+ G + + +G
Sbjct: 424 AVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIF 465
Score = 28.1 bits (63), Expect = 4.5
Identities = 22/98 (22%), Positives = 38/98 (38%), Gaps = 9/98 (9%)
Query: 27 LKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW 86
V+ + V G+L + ++FG++ SL + FV L +
Sbjct: 71 SLWGLVVSIFLVGGFIGALFAGWLSDRFGRKK-SLLIIALLFVIGAILMGLAAFA-LSVE 128
Query: 87 IPLTIFCICFWISGYGI---LALPWMLMSEIFPVRIRG 121
+ + + G G+ AL M +SEI P +RG
Sbjct: 129 ----MLIVGRVLLGIGVGIASALVPMYLSEIAPKALRG 162
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 65.0 bits (159), Expect = 2e-12
Identities = 33/127 (25%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 15 YLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIAL 74
Y IF+T G+ S V ++ GV+ + ++ V++FG+RP+ L + + L
Sbjct: 275 YSPTIFETLGL-SDSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVL 333
Query: 75 AICSMNLHWPGWI-PLTIFCICFWISGY--GILALPWMLMSEIFPVRIRGVACGICAAIN 131
+ + + + I I +I+ + G +PW+++SE+FP+ +R A I A N
Sbjct: 334 GVALLGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAAN 393
Query: 132 SIVCFLV 138
+ FL+
Sbjct: 394 WLANFLI 400
Score = 34.2 bits (79), Expect = 0.044
Identities = 21/127 (16%), Positives = 45/127 (35%), Gaps = 16/127 (12%)
Query: 4 GFNSSFVSM----RPYLVEIFQTFGVPLKSEWVLVLTGVL--AITGSLVSSLTVNKFGKR 57
G +F+++ + + L+++ + GSL + ++FG++
Sbjct: 17 GVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIGSLFAGKLGDRFGRK 76
Query: 58 PMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYG---ILALPWMLMSEI 114
L + + + + + + I G G I L M +SEI
Sbjct: 77 KSLLIGNVLFVIGALLQGFAKGKSFY-------MLIVGRVIVGLGVGGISVLVPMYISEI 129
Query: 115 FPVRIRG 121
P ++RG
Sbjct: 130 APKKLRG 136
>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional.
Length = 479
Score = 50.8 bits (122), Expect = 1e-07
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 15 YLVEIFQTFGVPLKSEWVL-VLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
Y EIF+T G + ++ GV+ +T ++++ +TV+KFG++P+ + + +
Sbjct: 293 YAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 352
Query: 74 LAIC-SMNLHWPGWIPLTIFCICFWISGYGILALP--WMLMSEIFPVRIRGVACGICAAI 130
L PG + L + F+++ + + P W+L+SEIFP IRG A I A
Sbjct: 353 LGTAFYTQA--PGIVALL--SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAA 408
Query: 131 NSIVCFLVTKTY 142
I + V+ T+
Sbjct: 409 QWIANYFVSWTF 420
>gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter. This model represents
the phosphate uptake symporter subfamily of the major
facilitator superfamily (pfam00083) [Transport and
binding proteins, Anions].
Length = 502
Score = 42.0 bits (99), Expect = 1e-04
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 40 AITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWIS 99
+ G V+ V+ G++P+ L I V L H L I+ + + +
Sbjct: 348 TVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYN--HLSTHGFLAIYVLAQFFA 405
Query: 100 GYGILALPWMLMSEIFPVRIRGVACGICAA 129
+G A +++ E+FP R R A GI AA
Sbjct: 406 NFGPNATTFIVPGEVFPTRYRSTAHGISAA 435
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.8 bits (86), Expect = 0.006
Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 4/84 (4%)
Query: 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT 90
+L++ + AI G+ + +FGK+ L + + + L L
Sbjct: 261 VLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF----LPPGSLWLFL 316
Query: 91 IFCICFWISGYGILALPWMLMSEI 114
+ + I LPW +++++
Sbjct: 317 VLVVLAGIGLGLATLLPWAMLADV 340
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 35.4 bits (82), Expect = 0.018
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 5/138 (3%)
Query: 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT 90
+L L G+ I G+L+ L ++ G+R + L +A + P L
Sbjct: 215 LLLSLFGLGGILGALLGGLLSDRLGRRRLLL-----LIGLLLAALGLLLLALAPSLALLL 269
Query: 91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSITWFG 150
+ + L SE+ P RG A G+ S+ L + G
Sbjct: 270 VALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGG 329
Query: 151 LHGTLFIYSFITGIGFAI 168
G I + + + +
Sbjct: 330 YGGVFLILAALALLAALL 347
Score = 28.4 bits (64), Expect = 3.1
Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 7/183 (3%)
Query: 8 SFVSMRPYLVEIFQTFGV-PLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGI 66
+ P L + + G+ ++ ++ + GSL++ ++FG+R + L +
Sbjct: 14 DRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLL 73
Query: 67 CFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGI 126
+ ++ LA L + + G + L++E FP + RG A G+
Sbjct: 74 FALGSLLLAFA------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGL 127
Query: 127 CAAINSIVCFLVTKTYVTSITWFGLHGTLFIYSFITGIGFAIRIRGVACGICAAINSIVC 186
+A + L G I + + + + + + + A+ +
Sbjct: 128 FSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLALAFFLL 187
Query: 187 FLV 189
Sbjct: 188 SFG 190
>gnl|CDD|234101 TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent
dehydrogenase, glucose/quinate/shikimate family. This
protein family has a phylogenetic distribution very
similar to that coenzyme PQQ biosynthesis enzymes, as
shown by partial phylogenetic profiling. Members of this
family have several predicted transmembrane helices in
the N-terminal region, and include the quinoprotein
glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli
and the quinate/shikimate dehydrogenase of Acinetobacter
sp. ADP1 (EC 1.1.99.25). Sequences closely related
except for the absense of the N-terminal hydrophobic
region, scoring in the gray zone between the trusted and
noise cutoffs, include PQQ-dependent glycerol (EC
1.1.99.22) and and other polyol (sugar alcohol)
dehydrogenases.
Length = 764
Score = 33.1 bits (76), Expect = 0.11
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 31 WVLVLTG----VLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW 86
W++ L G +LA L+S+ + F +RP LW + T+ A+ + L +
Sbjct: 1 WLVALGGSWYYLLAGLALLLSAWLL--FRRRPAGLWLYAALLLGTLIWALWEVGLDFWPL 58
Query: 87 IP--LTIFCICFWISGYGILALPWM 109
IP I + W L LPW+
Sbjct: 59 IPRLGLIAVLGLW------LLLPWV 77
>gnl|CDD|234005 TIGR02774, rexB_recomb, ATP-dependent nuclease subunit B. DNA
repair is accomplished by several different systems in
prokaryotes. Recombinational repair of double-stranded
DNA breaks involves the RecBCD pathway in some lineages,
and AddAB (also called RecAB) in other. The AddA protein
is conserved between the firmicutes and the
alphaproteobacteria, while the partner protein is not.
The partner may be designated AddB, as in Bacillus and
in alphaproteobacteria, or RexB as in Streptococcus and
Lactococcus. Note, however, that RexB proteins lack an
N-terminal GxxGxGK[ST] ATP-binding motif found in
Bacillus subtilis and related species, and this
difference may be important; this model represents
specifically RexB proteins as found in Streptococcus and
Lactococcus [DNA metabolism, DNA replication,
recombination, and repair].
Length = 1076
Score = 29.8 bits (67), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 5 FNSSFVSMRPYLVEIFQTFGVPLKSE 30
FN S PYL E+ FGVPL+ +
Sbjct: 633 FNESEDKESPYLQELID-FGVPLREK 657
>gnl|CDD|221781 pfam12805, FUSC-like, FUSC-like inner membrane protein yccS. This
family has similarities to the fusaric acid resistance
protein family. The proteins are lodged in the inner
membrane.
Length = 284
Score = 29.5 bits (67), Expect = 1.4
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 61 LWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILA 105
L T ICF I+ + +P L + F + +L
Sbjct: 2 LLLTLICF--AISSLSVQLLFPYPWLFALGLALSTF---LFIMLG 41
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 29.2 bits (66), Expect = 2.0
Identities = 23/112 (20%), Positives = 48/112 (42%), Gaps = 8/112 (7%)
Query: 19 IFQTFGV-PLKSEWVLVLTGVLA----ITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIA 73
+ Q G+ L++ ++ L G++ I G +S L + + + + I + ++
Sbjct: 242 LVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLV-LS 300
Query: 74 LAICSMNLHWPGWIPLTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACG 125
L + + N + L + + G G A+ W L+S+ P I G+ G
Sbjct: 301 LLMFATNYVNIPYAALALVAL--GFFGLGAGAIGWALISDNAPGNIAGLTGG 350
>gnl|CDD|162098 TIGR00900, 2A0121, H+ Antiporter protein. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 365
Score = 28.8 bits (65), Expect = 2.1
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 11/94 (11%)
Query: 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSL-WSTGICFVFTIALAICSMNLHWPGWIPL 89
WVL G+ G+L+ +L + G+ + TG FV +A+ + + P PL
Sbjct: 251 WVLAAFGL----GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT---PPNFPL 303
Query: 90 TIFCICFWIS-GYGILALPWM-LMSEIFPVRIRG 121
+ F I GYG + +P L+ P + G
Sbjct: 304 FLVL-WFAIGVGYGPINVPQGTLLQRRVPAELLG 336
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 28.4 bits (64), Expect = 3.0
Identities = 28/124 (22%), Positives = 49/124 (39%), Gaps = 19/124 (15%)
Query: 11 SMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTV----NKFGKRPMSLWSTGI 66
S + I + + + W + LT G L+ S ++FG++ + L ST +
Sbjct: 107 SYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLV 166
Query: 67 CFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALPWM----LMSEIFPVRIRGV 122
V + L S N T+F + + G GI + W+ L +E P + R +
Sbjct: 167 TAVSGV-LTAFSPN--------YTVFLVFRLLVGMGIGGI-WVQAVVLNTEFLPKKQRAI 216
Query: 123 ACGI 126
G
Sbjct: 217 -VGT 219
Score = 28.1 bits (63), Expect = 4.3
Identities = 17/99 (17%), Positives = 45/99 (45%), Gaps = 4/99 (4%)
Query: 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT 90
L ++G++ + L++ L +++ G+R S + V + L ++L++
Sbjct: 359 LDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYF--LRTAL 416
Query: 91 IFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAA 129
F I+ + ++ +E++P +R + G+C+
Sbjct: 417 AVLGKFGITSAFQMV--YLYTAELYPTVVRNLGVGVCST 453
>gnl|CDD|200534 cd11273, Sema_plexin_A3, The Sema domain, a protein interacting
module, of Plexin A3. Plexin-A3 forms a receptor
complex with neuropilin-2 and transduces signals for
class 3 semaphorins in the nervous system. Both plexins
A3 and A4 are essential for normal sympathetic neuron
development. They function cooperatively to regulate the
migration of sympathetic neurons, and differentially to
guide sympathetic axons. Both plexins A3 and A4 are not
required for guiding neural crest precursors prior to
reaching the sympathetic anlagen. Plexin A3 is a major
driving force for intraspinal motor growth cone
guidance. The Sema domain is located at the N-terminus
and contains four disulfide bonds formed by eight
conserved cysteine residues. It serves as a
ligand-recognition and -binding module.
Length = 469
Score = 28.4 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)
Query: 100 GYGILALPWMLMSEI----FPVRIRGVACGI 126
G G L+LPW+L E+ P++I G CG+
Sbjct: 339 GEGTLSLPWLLNKELPCINTPMQINGNFCGL 369
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 28.3 bits (64), Expect = 3.4
Identities = 18/116 (15%), Positives = 40/116 (34%), Gaps = 14/116 (12%)
Query: 4 GFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWS 63
G + + +RP+L + F V S VL+ G+ G+L+ ++ +R +L +
Sbjct: 226 GHFALYTYIRPFLESVAG-FSVSAVS-LVLLAFGIAGFIGNLLGGRLADRGPRR--ALIA 281
Query: 64 TGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYGILALP---WMLMSEIFP 116
+ + L + + W G+ ++ + P
Sbjct: 282 ALLLLALALLA-----LTFTGASPALALALLFLW--GFAFSPALQGLQTRLARLAP 330
>gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter. This model
represents the metabolite:H+ symport subfamily of the
major facilitator superfamily (pfam00083), including
citrate-H+ symporters, dicarboxylate:H+ symporters, the
proline/glycine-betaine transporter ProP, etc [Transport
and binding proteins, Unknown substrate].
Length = 394
Score = 28.0 bits (63), Expect = 4.1
Identities = 16/105 (15%), Positives = 40/105 (38%), Gaps = 4/105 (3%)
Query: 31 WVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLT 90
VL+L+ +L +S ++ G+RP+ + T + + + L + ++
Sbjct: 259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFL 318
Query: 91 IFCICFWISGY-GILALPWMLMSEIFPVRIRGVACGICAAINSIV 134
+ + Y G + + E+FP +R + + +
Sbjct: 319 VLGMALIGGMYTGPMGS---FLPELFPTEVRYTGASLAYNLAGAI 360
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 28.1 bits (63), Expect = 4.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 43 GSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIPLTIFCICFWISGYG 102
G+L ++ G+R + LWS + VFT+ A+ + L I + G
Sbjct: 68 GALFFGPLADRIGRRRVLLWSILLFSVFTLLCALAT------NVTQLLILRFLAGLGLGG 121
Query: 103 ILALPWMLMSEIFPVRIRGVACGI 126
++ L+SE P R RG A G+
Sbjct: 122 LMPNLNALVSEYAPKRFRGTAVGL 145
>gnl|CDD|240501 cd13743, SPRY_PRY_TRIM50, PRY/SPRY domain in tripartite
motif-binding protein 50 (TRIM50). This domain,
consisting of the distinct N-terminal PRY subdomain
followed by the SPRY subdomain, is found at the
C-terminus of TRIM50. TRIM50, an E3 ubiquitin ligase, is
deleted in Williams-Beuren (WBS) syndrome, a
multi-system neurodevelopmental disorder caused by the
deletion of contiguous genes at chromosome region
7q11.23. It is specifically expressed in gastric
parietal cells and may play an essential role in
tubulovesicular dynamics. It also interacts with and
increases the level of p62, a multifunctional adaptor
protein that is implicated in various cellular processes
such as the autophagy clearance of polyubiquitinated
protein aggregates.
Length = 189
Score = 27.2 bits (60), Expect = 5.9
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 173 VACGICAA--------INSIVCFLVTKTYIGIDWHRYYWRVVLAKSKQYRM 215
V CG+ A + C L +K G R+YW VV+ +R+
Sbjct: 34 VQCGLLAQRRASQPERFDYSTCVLASK---GFSCGRHYWEVVVGSKSDWRL 81
>gnl|CDD|184994 PRK15034, PRK15034, nitrate/nitrite transport protein NarU;
Provisional.
Length = 462
Score = 27.5 bits (61), Expect = 7.1
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 24 GVPLKSEWVLVLTGVLAITGSLVS---SLTVNKFGKRPMSLWSTGICFVFTIALAICSMN 80
G ++ + +LT + +++G+L+ S V FG R +++ST I + + L I N
Sbjct: 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQN 123
Query: 81 LHWPGWIPLTIFCIC 95
+ P I + I +C
Sbjct: 124 PNTPFGIFIVIALLC 138
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.331 0.143 0.487
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,504,510
Number of extensions: 1076938
Number of successful extensions: 1808
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1767
Number of HSP's successfully gapped: 163
Length of query: 226
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 133
Effective length of database: 6,812,680
Effective search space: 906086440
Effective search space used: 906086440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 57 (25.7 bits)