RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10294
         (226 letters)



>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane,
           major facilitator superfamily, secondary active membrane
           transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
          Length = 451

 Score = 33.9 bits (78), Expect = 0.033
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 3/101 (2%)

Query: 27  LKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGW 86
            KS W   L     I G+L+     +K  +       TG+ F+  + +A     ++  G 
Sbjct: 288 DKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA--TGVFFMTLVTIATIVYWMNPAGN 345

Query: 87  IPLTIFCICFW-ISGYGILALPWMLMSEIFPVRIRGVACGI 126
             + + C+       YG + L  +   E+ P +  G A G 
Sbjct: 346 PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGF 386


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.9 bits (77), Expect = 0.039
 Identities = 24/109 (22%), Positives = 31/109 (28%), Gaps = 26/109 (23%)

Query: 3   PGFNSSFVSMRPYLVEIFQTFGVPLKSEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLW 62
           P F+S        LV         L    V      + I    V   T +  G     L 
Sbjct: 426 P-FHS------HLLVPASDLINKDLVKNNVSFNAKDIQIP---VYD-TFD--GSDLRVL- 471

Query: 63  STGICFVFTIALAICSMNLHWPGWIPLTIF----CICF---WISGYGIL 104
           S  I     I   I  + + W      T F     + F     SG G+L
Sbjct: 472 SGSI--SERIVDCIIRLPVKWET---TTQFKATHILDFGPGGASGLGVL 515


>2qgy_A Enolase from the environmental genome shotgun sequencing of the
           sargasso SEA; structural genomics, unknown function,
           PSI-2; 1.80A {Environmental sample}
          Length = 391

 Score = 28.4 bits (64), Expect = 1.9
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 17/86 (19%)

Query: 130 INSIVCFLVTKTYVTSITWFGLHGTLFIY----SFITGIGFAIRIRGVACGICAAINSIV 185
           ++ +  ++    +++   W      + I       I G G A  I     GI   I  + 
Sbjct: 13  LSRLKIWIT-DNHLSDDQWSNTKKFIIIKITTEDGIEGWGEAFSINFREKGIAIIIKELF 71

Query: 186 CFLVTKTYIGID-------WHRYYWR 204
             +       I        +++    
Sbjct: 72  REI-----SNIPNLSIKSFYNKISLL 92


>4a35_A Mitochondrial enolase superfamily member 1; isomerase; 1.74A {Homo
           sapiens}
          Length = 441

 Score = 27.5 bits (61), Expect = 4.2
 Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)

Query: 161 ITGIGFAIRIRGVACGICAAINSIVCFLVTKTYIGI--DWHRYYWRVV 206
           I G G    +      +  A+N++   ++ K    I  D+  +Y ++ 
Sbjct: 50  IKGCGITFTLGKGTEVVVCAVNALAHHVLNKDLKDIVGDFRGFYRQLT 97


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.143    0.487 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,577,718
Number of extensions: 204626
Number of successful extensions: 490
Number of sequences better than 10.0: 1
Number of HSP's gapped: 489
Number of HSP's successfully gapped: 17
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 55 (25.4 bits)