RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10294
         (226 letters)



>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 30.8 bits (68), Expect = 0.14
 Identities = 26/141 (18%), Positives = 44/141 (31%), Gaps = 2/141 (1%)

Query: 29  SEWVLVLTGVLAITGSLVSSLTVNKFGKRPMSLWSTGICFVFTIALAICSMNLHWPGWIP 88
           S W   L     I G+L+     +K  +            + TIA  +  MN      + 
Sbjct: 287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTV- 345

Query: 89  LTIFCICFWISGYGILALPWMLMSEIFPVRIRGVACGICAAINSIVCFLVTKTYVTSIT- 147
             I  I      YG + L  +   E+ P +  G A G       +   +     V     
Sbjct: 346 DMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 405

Query: 148 WFGLHGTLFIYSFITGIGFAI 168
           +FG  G   +    + +   +
Sbjct: 406 FFGWDGGFMVMIGGSILAVIL 426


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.143    0.487 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 902,833
Number of extensions: 40559
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 14
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.9 bits)