Query psy10295
Match_columns 115
No_of_seqs 101 out of 166
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 22:47:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2119|consensus 100.0 3.3E-44 7.2E-49 312.4 6.4 114 1-114 716-831 (879)
2 PF04685 DUF608: Protein of un 100.0 5.6E-42 1.2E-46 281.3 1.0 107 1-107 259-365 (365)
3 COG4354 Predicted bile acid be 100.0 4.4E-31 9.5E-36 227.1 8.0 108 1-112 610-720 (721)
4 PF07721 TPR_4: Tetratricopept 71.3 9.8 0.00021 19.4 3.4 24 42-65 2-25 (26)
5 PLN00083 photosystem II subuni 61.5 5.8 0.00012 27.7 1.7 27 78-108 59-85 (101)
6 KOG4340|consensus 51.1 23 0.0005 30.3 3.9 39 40-84 177-215 (459)
7 PF13428 TPR_14: Tetratricopep 49.7 45 0.00098 18.6 4.4 29 42-70 2-30 (44)
8 PF13308 YARHG: YARHG domain 42.8 26 0.00057 22.9 2.5 29 53-84 18-46 (81)
9 PF13174 TPR_6: Tetratricopept 39.3 53 0.0011 16.3 3.2 26 45-70 4-29 (33)
10 PF07720 TPR_3: Tetratricopept 36.9 54 0.0012 18.4 2.9 20 44-63 4-23 (36)
11 PLN00053 photosystem II subuni 36.3 26 0.00055 25.2 1.7 27 78-108 70-99 (117)
12 COG5061 ERO1 Oxidoreductin, en 36.2 23 0.00051 30.3 1.7 25 79-109 142-166 (425)
13 PF09968 DUF2202: Uncharacteri 29.0 37 0.0008 25.6 1.6 21 56-77 8-28 (162)
14 PF04725 PsbR: Photosystem II 26.6 47 0.001 23.3 1.7 27 78-108 52-81 (99)
15 PF04422 FrhB_FdhB_N: Coenzyme 23.9 76 0.0017 20.6 2.3 31 34-64 13-43 (82)
16 PF14561 TPR_20: Tetratricopep 23.7 1.5E+02 0.0032 19.6 3.7 29 42-70 23-51 (90)
17 KOG2429|consensus 23.3 78 0.0017 28.7 2.8 75 19-104 300-379 (622)
18 PF07719 TPR_2: Tetratricopept 23.2 1.1E+02 0.0025 15.2 3.9 27 43-69 3-29 (34)
19 PF14559 TPR_19: Tetratricopep 23.2 1.6E+02 0.0035 17.0 3.5 28 42-69 26-53 (68)
20 PF13432 TPR_16: Tetratricopep 23.1 1.2E+02 0.0027 17.5 3.0 24 45-68 1-24 (65)
21 PF03417 AAT: Acyl-coenzyme A: 22.5 80 0.0017 23.6 2.5 54 15-68 41-98 (225)
22 PF04034 DUF367: Domain of unk 21.2 1.2E+02 0.0025 22.1 3.0 21 46-66 71-91 (127)
23 PF14689 SPOB_a: Sensor_kinase 21.1 2.2E+02 0.0047 17.5 4.0 26 46-71 28-53 (62)
24 PF08628 Nexin_C: Sorting nexi 20.8 2.7E+02 0.0058 18.7 4.6 40 19-59 47-87 (113)
25 PF10942 DUF2619: Protein of u 20.6 1.4E+02 0.003 19.7 2.9 22 43-64 7-28 (69)
No 1
>KOG2119|consensus
Probab=100.00 E-value=3.3e-44 Score=312.45 Aligned_cols=114 Identities=46% Similarity=0.749 Sum_probs=111.3
Q ss_pred ChhHHHhhccccCCCccccccccCCCCCccCCCCCcccccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhh--cCcc
Q psy10295 1 MKKKSRASARGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYER--TGLG 78 (115)
Q Consensus 1 L~~Iy~~N~~~~~~g~~GavNg~~p~G~~d~~~~qs~EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~--~G~~ 78 (115)
|+|||++||++|++|++||||||.|+|+||.+++||+|||+||+|+|||.||||||.|+||++|+|+|+++|++ .|++
T Consensus 716 L~tIy~~NVm~~~~G~~GAVNGm~p~G~VD~ssiQS~EvW~GvtYalAAtMIqeG~~e~~FqTA~G~y~~~w~~~glg~~ 795 (879)
T KOG2119|consen 716 LDTIYDFNVMKFKGGRMGAVNGMLPSGKVDTSSIQSREVWAGVTYALAATMIQEGLVEKGFQTASGIYEAIWSETGLGYA 795 (879)
T ss_pred HHHHHhhceeeecCCceeccccccCCCccccccceehhhhccHHHHHHHHHHHHhhHHhhhhhhhhhHHHHhhhcccceE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999998 7999
Q ss_pred ccCCcccccCCccccCcccchhHHHHHHHHHccccC
Q psy10295 79 FETPEGLTGDKTYRSGGYMRALAVYAMQDAYLKGKV 114 (115)
Q Consensus 79 ~~tPea~~~~~~~r~~~Y~R~laiWa~~~Al~~~~~ 114 (115)
|||||+|+..+.||+..||||||||+||+||+..+-
T Consensus 796 FqTPEa~~~~~~yRsl~YMRPLsIWamQwaL~~~~~ 831 (879)
T KOG2119|consen 796 FQTPEAWYMEDEYRSLGYMRPLAIWAMQWALTKPQA 831 (879)
T ss_pred EECchhhhcchhhhhhhhcchhHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998763
No 2
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=100.00 E-value=5.6e-42 Score=281.31 Aligned_cols=107 Identities=43% Similarity=0.732 Sum_probs=21.3
Q ss_pred ChhHHHhhccccCCCccccccccCCCCCccCCCCCcccccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCcccc
Q psy10295 1 MKKKSRASARGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFE 80 (115)
Q Consensus 1 L~~Iy~~N~~~~~~g~~GavNg~~p~G~~d~~~~qs~EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~~ 80 (115)
|++||++||+.+.++++|++||++|+|+||.+++|++||||||+|++||+||++||.|||++|+++||++++++.|++||
T Consensus 259 L~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~evW~G~~y~~Aa~mi~~G~~~e~~~~~~~~~~~~~~~~g~~f~ 338 (365)
T PF04685_consen 259 LRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSNEVWTGVEYAVAAHMIQEGMVEEGLEIAKGIYDRYYGRKGNPFN 338 (365)
T ss_dssp HHHHHHHHEE-S-BTTTBGGGGS-T-------------------------------------------------------
T ss_pred HHHHHHhcCeEccCCCCcEEEeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999978999999
Q ss_pred CCcccccCCccccCcccchhHHHHHHH
Q psy10295 81 TPEGLTGDKTYRSGGYMRALAVYAMQD 107 (115)
Q Consensus 81 tPea~~~~~~~r~~~Y~R~laiWa~~~ 107 (115)
|||+|++.+.||++|||||||||||+|
T Consensus 339 ~pE~~~~~~~~r~~~Y~R~ls~W~~~~ 365 (365)
T PF04685_consen 339 TPEAINADGNYRGSHYMRPLSIWSMQW 365 (365)
T ss_dssp ---------------------------
T ss_pred cccccccccccccccccccccccccCC
Confidence 999999999999999999999999986
No 3
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=99.97 E-value=4.4e-31 Score=227.14 Aligned_cols=108 Identities=22% Similarity=0.404 Sum_probs=104.2
Q ss_pred ChhHHHhhccccCCCccccccccCCCCCccC-CCCCcccccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCccc
Q psy10295 1 MKKKSRASARGFEAGSMGAVNGMKPNGDRDR-SAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGF 79 (115)
Q Consensus 1 L~~Iy~~N~~~~~~g~~GavNg~~p~G~~d~-~~~qs~EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~ 79 (115)
|++||++||.+ +++|++|+++|||+|+. .+.|+.||||||+|++||||+++||.||++++++.+|+++++ .|++|
T Consensus 610 l~sIy~lnf~~---~~~~~~n~v~~dgsp~n~~svq~~s~W~gi~F~laa~m~~~Gm~de~~~~~e~~w~~l~~-ng~~f 685 (721)
T COG4354 610 LESIYDLNFNA---SEYCAANGVRPDGSPVNPLSVQPLSVWPGINFALAAHMIQMGMKDEGFELAENVWNQLKN-NGLQF 685 (721)
T ss_pred HHHHHhhcccc---ccccccCccCCCCCcCCcccccccccccchHHHHHHHHHHhcchhhhhHHHHHHHHHHHh-CCccc
Confidence 68999999998 99999999999999998 799999999999999999999999999999999999999998 89999
Q ss_pred cCCcccccCC--ccccCcccchhHHHHHHHHHccc
Q psy10295 80 ETPEGLTGDK--TYRSGGYMRALAVYAMQDAYLKG 112 (115)
Q Consensus 80 ~tPea~~~~~--~~r~~~Y~R~laiWa~~~Al~~~ 112 (115)
|||||||+.+ .+|++||+|+||+|+++.+|.|+
T Consensus 686 r~p~aInav~g~~~~l~~yv~~~s~W~l~~l~~g~ 720 (721)
T COG4354 686 RQPSAINAVGGETNRLSHYVGSPSIWALLFLLNGK 720 (721)
T ss_pred CChhheeeccceeeehhhccCCchHHHHHHHhccc
Confidence 9999999997 88999999999999999999876
No 4
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.29 E-value=9.8 Score=19.43 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHH
Q psy10295 42 GVTYLLSAAMLYEGNVDEAWTTAG 65 (115)
Q Consensus 42 Gv~y~vAa~mi~~Gm~ee~~~~a~ 65 (115)
...+.+|..+...|..++|.++.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 457889999999999999988764
No 5
>PLN00083 photosystem II subunit R; Provisional
Probab=61.52 E-value=5.8 Score=27.68 Aligned_cols=27 Identities=26% Similarity=0.267 Sum_probs=22.5
Q ss_pred cccCCcccccCCccccCcccchhHHHHHHHH
Q psy10295 78 GFETPEGLTGDKTYRSGGYMRALAVYAMQDA 108 (115)
Q Consensus 78 ~~~tPea~~~~~~~r~~~Y~R~laiWa~~~A 108 (115)
+.-+||.|.+. ++-|..-|.+|++.++
T Consensus 59 PIY~p~eWs~s----GD~Y~GgL~~WA~tla 85 (101)
T PLN00083 59 PIYTPQEFKTD----GDKYEGDLKLAAAAVA 85 (101)
T ss_pred CccChhhcCCC----cchhhccHHHHHHHHH
Confidence 56789999888 4588889999999875
No 6
>KOG4340|consensus
Probab=51.11 E-value=23 Score=30.26 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=34.1
Q ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCccccCCcc
Q psy10295 40 WTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEG 84 (115)
Q Consensus 40 WtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~~tPea 84 (115)
=+|+.|.+|-.-.+.|..+.|++.+..|.++ |+ .++||-
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieR-----G~-r~HPEl 215 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIER-----GI-RQHPEL 215 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHh-----hh-hcCCcc
Confidence 4899999999999999999999999999976 65 778863
No 7
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=49.72 E-value=45 Score=18.57 Aligned_cols=29 Identities=21% Similarity=0.002 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10295 42 GVTYLLSAAMLYEGNVDEAWTTAGGLYRT 70 (115)
Q Consensus 42 Gv~y~vAa~mi~~Gm~ee~~~~a~~~~~~ 70 (115)
.+-+.+|......|..++|.++.+.+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45678999999999999988887777643
No 8
>PF13308 YARHG: YARHG domain
Probab=42.79 E-value=26 Score=22.95 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=20.8
Q ss_pred HcCChHHHHHHHHHHHHHHHhhcCccccCCcc
Q psy10295 53 YEGNVDEAWTTAGGLYRTVYERTGLGFETPEG 84 (115)
Q Consensus 53 ~~Gm~ee~~~~a~~~~~~~y~~~G~~~~tPea 84 (115)
..++..+-+.+++... |.|+|+.|++|+.
T Consensus 18 l~~ls~~~L~~~RNei---yAr~Gy~F~~~~l 46 (81)
T PF13308_consen 18 LSNLSCEELRIARNEI---YARHGYCFKSQDL 46 (81)
T ss_pred HHcCCHHHHHHHHHHH---HHHcCCCCCCHHH
Confidence 3455555577766554 8889999999865
No 9
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=39.25 E-value=53 Score=16.33 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=20.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10295 45 YLLSAAMLYEGNVDEAWTTAGGLYRT 70 (115)
Q Consensus 45 y~vAa~mi~~Gm~ee~~~~a~~~~~~ 70 (115)
|.+|-.....|..++|.++-+.+.++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66777778889999988887777654
No 10
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.86 E-value=54 Score=18.37 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.9
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q psy10295 44 TYLLSAAMLYEGNVDEAWTT 63 (115)
Q Consensus 44 ~y~vAa~mi~~Gm~ee~~~~ 63 (115)
-|++|+..-+.|..++|.++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 47899999999999998877
No 11
>PLN00053 photosystem II subunit R; Provisional
Probab=36.25 E-value=26 Score=25.21 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.3
Q ss_pred cccCCcccccCCccccCcccch---hHHHHHHHH
Q psy10295 78 GFETPEGLTGDKTYRSGGYMRA---LAVYAMQDA 108 (115)
Q Consensus 78 ~~~tPea~~~~~~~r~~~Y~R~---laiWa~~~A 108 (115)
+.=+||.|.+. ++-|..- |.||++.++
T Consensus 70 PIY~~~ews~~----Gd~Y~ggttgL~~wa~~l~ 99 (117)
T PLN00053 70 PIYTPDEWSPS----GDVYVGGTTGLLIWAVTLA 99 (117)
T ss_pred CCcChhhcCCC----CCeeeCChhhHHHHHHHHH
Confidence 46689999888 4577776 999999874
No 12
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=36.19 E-value=23 Score=30.33 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=20.4
Q ss_pred ccCCcccccCCccccCcccchhHHHHHHHHH
Q psy10295 79 FETPEGLTGDKTYRSGGYMRALAVYAMQDAY 109 (115)
Q Consensus 79 ~~tPea~~~~~~~r~~~Y~R~laiWa~~~Al 109 (115)
-+|||+++..+ +.| +..||.+.+--
T Consensus 142 lenpErfTGY~---g~h---Sa~IWr~Iyeq 166 (425)
T COG5061 142 LENPERFTGYK---GNH---SAEIWRKIYEQ 166 (425)
T ss_pred hcChHhhcCCC---CCc---hHHHHHHHHHh
Confidence 58999999885 677 89999988743
No 13
>PF09968 DUF2202: Uncharacterized protein domain (DUF2202); InterPro: IPR019243 This domain, found in various hypothetical archaeal proteins, has no known function.; PDB: 3Q4O_A 3Q4Q_A 3Q4R_A 3Q4N_A.
Probab=28.98 E-value=37 Score=25.63 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHhhcCc
Q psy10295 56 NVDEAWTTAGGLYRTVYERTGL 77 (115)
Q Consensus 56 m~ee~~~~a~~~~~~~y~~~G~ 77 (115)
|.|| .++|+-+|..+|+++|+
T Consensus 8 m~EE-EKlArDvY~~l~~~~g~ 28 (162)
T PF09968_consen 8 MREE-EKLARDVYLTLYEKWGL 28 (162)
T ss_dssp HHHH-HHHHHHHHHHHHHHH--
T ss_pred HHHH-HHHHHHHHHHHHHHcCC
Confidence 4555 78999999999998774
No 14
>PF04725 PsbR: Photosystem II 10 kDa polypeptide PsbR; InterPro: IPR006814 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight intrinsic protein PsbR found in PSII, which is also known as the 10 kDa polypeptide. The PsbR gene is found only in the nucleus of green algae and higher plants. PsbR may provide a binding site for the extrinsic oxygen-evolving complex protein PsbP to the thylakoid membrane. PsbR has a transmembrane domain to anchor it to the thylakoid membrane, and a charged N-terminal domain capable of forming ion bridges with extrinsic proteins, allowing PsbR to act as a docking protein. PsbR may be a pH-dependent stabilising protein that functions at both donor and acceptor sides of PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0042651 thylakoid membrane
Probab=26.62 E-value=47 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=21.4
Q ss_pred cccCCcccccCCccccCcccc---hhHHHHHHHH
Q psy10295 78 GFETPEGLTGDKTYRSGGYMR---ALAVYAMQDA 108 (115)
Q Consensus 78 ~~~tPea~~~~~~~r~~~Y~R---~laiWa~~~A 108 (115)
+.=+||.|.+. ++-|.. -|.+||+..+
T Consensus 52 PIY~p~~Ws~~----GD~Y~gGt~gL~~WA~~l~ 81 (99)
T PF04725_consen 52 PIYTPDEWSPS----GDVYVGGTTGLLIWAVTLA 81 (99)
T ss_pred CCcChhhcCCC----CCeecCChhhHHHHHHHHH
Confidence 56789999988 457777 5999999874
No 15
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=23.94 E-value=76 Score=20.63 Aligned_cols=31 Identities=29% Similarity=0.253 Sum_probs=25.7
Q ss_pred CCcccccchHHHHHHHHHHHcCChHHHHHHH
Q psy10295 34 IQSEEVWTGVTYLLSAAMLYEGNVDEAWTTA 64 (115)
Q Consensus 34 ~qs~EvWtGv~y~vAa~mi~~Gm~ee~~~~a 64 (115)
+.....+-|+.-+++.+++.+|+.|-++.+.
T Consensus 13 ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~~~ 43 (82)
T PF04422_consen 13 IREKSQSGGVVTALLAYLLESGLVDGVVVVG 43 (82)
T ss_pred hcccCCcHHHHHHHHHHHHHcCCceEEEEEe
Confidence 4456778999999999999999998766555
No 16
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=23.65 E-value=1.5e+02 Score=19.60 Aligned_cols=29 Identities=31% Similarity=0.405 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10295 42 GVTYLLSAAMLYEGNVDEAWTTAGGLYRT 70 (115)
Q Consensus 42 Gv~y~vAa~mi~~Gm~ee~~~~a~~~~~~ 70 (115)
-..|.+|...+..|..++|++..-.+..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999988877754
No 17
>KOG2429|consensus
Probab=23.30 E-value=78 Score=28.69 Aligned_cols=75 Identities=27% Similarity=0.337 Sum_probs=50.4
Q ss_pred cccccCCCCCccCCCCCcc-cccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCccccCCcccccC-Ccc---cc
Q psy10295 19 AVNGMKPNGDRDRSAIQSE-EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD-KTY---RS 93 (115)
Q Consensus 19 avNg~~p~G~~d~~~~qs~-EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~~tPea~~~~-~~~---r~ 93 (115)
-+|-.--+|++..+-+||= .-|+|+. .+.|.+|.|..+-.. |=.+|+++|. .||+||-. +.+ +.
T Consensus 300 Y~~V~m~~G~v~~p~~dSLqAfwpGlq-------vLaGDvd~A~~~h~~-y~~vwkkyG~---lPEryN~~~~~~~~~~~ 368 (622)
T KOG2429|consen 300 YVNVNMDSGSVSLPWFDSLQAFWPGLQ-------VLAGDVDDAIRTHLM-YFSVWKKYGF---LPERYNLATQEPPPKRE 368 (622)
T ss_pred EEEEecCCCceehHHHhhHHhhccchh-------hhhcchHHHHHHHHH-HHHHHHHcCC---CcccccccCCCCCCCcc
Confidence 4566666788776555553 6899974 678999998877654 4456888886 79999877 433 34
Q ss_pred CcccchhHHHH
Q psy10295 94 GGYMRALAVYA 104 (115)
Q Consensus 94 ~~Y~R~laiWa 104 (115)
..=+||==+=|
T Consensus 369 ~YPLRPElvES 379 (622)
T KOG2429|consen 369 GYPLRPELVES 379 (622)
T ss_pred cCCCCHHHHHH
Confidence 44467644333
No 18
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=23.24 E-value=1.1e+02 Score=15.16 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10295 43 VTYLLSAAMLYEGNVDEAWTTAGGLYR 69 (115)
Q Consensus 43 v~y~vAa~mi~~Gm~ee~~~~a~~~~~ 69 (115)
+-|.++-.+...|..++|.+..+....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347788889999999998888777654
No 19
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=23.24 E-value=1.6e+02 Score=17.00 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10295 42 GVTYLLSAAMLYEGNVDEAWTTAGGLYR 69 (115)
Q Consensus 42 Gv~y~vAa~mi~~Gm~ee~~~~a~~~~~ 69 (115)
-+.+.+|-..+..|..++|.++.+.+-.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3556789999999999998887766553
No 20
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=23.12 E-value=1.2e+02 Score=17.51 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=18.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q psy10295 45 YLLSAAMLYEGNVDEAWTTAGGLY 68 (115)
Q Consensus 45 y~vAa~mi~~Gm~ee~~~~a~~~~ 68 (115)
|..|-..+..|..++|.++.+.+-
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHH
Confidence 567888888898888777666655
No 21
>PF03417 AAT: Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase This family belongs to family C45 of the peptidase classification.; InterPro: IPR005079 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C45 (clan PB(C)). The active site residue for members of this family and family T1 is C-terminal to the autolytic cleavage site. They represent a family of enzymes which catalyse the final step in penicillin biosynthesis []. ; GO: 0042318 penicillin biosynthetic process; PDB: 3GVZ_A 2X1D_D 2X1E_B 2X1C_A.
Probab=22.54 E-value=80 Score=23.57 Aligned_cols=54 Identities=22% Similarity=0.344 Sum_probs=39.2
Q ss_pred Ccc-ccccccCCCC-CccCCCCCcccc-cchHHHHHHHHHHHc-CChHHHHHHHHHHH
Q psy10295 15 GSM-GAVNGMKPNG-DRDRSAIQSEEV-WTGVTYLLSAAMLYE-GNVDEAWTTAGGLY 68 (115)
Q Consensus 15 g~~-GavNg~~p~G-~~d~~~~qs~Ev-WtGv~y~vAa~mi~~-Gm~ee~~~~a~~~~ 68 (115)
|.. |...||...| .+......+++. ..|+-+.+....+++ .-.+||+++++..-
T Consensus 41 g~~~G~~~G~N~~Glav~~n~l~~~~~~~~G~p~~~l~R~iLe~~t~~eA~~~l~~~~ 98 (225)
T PF03417_consen 41 GQLPGVIDGMNSAGLAVGINALSSRDPSQPGLPRHFLVRKILECRTVEEAIAILRSAP 98 (225)
T ss_dssp TSS-SEEEEEETTS-EEEEECTSBTTT-TTSB-HHHHHHHHHC-SSHHHHHHCHHCCT
T ss_pred cccccccccEeCcceEEEeccccccCcccCCChHHHHHHHHhcCCCHHHHHHHHHhcC
Confidence 444 8889999998 344345666666 999999988888887 33688888877663
No 22
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.19 E-value=1.2e+02 Score=22.15 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=18.0
Q ss_pred HHHHHHHHcCChHHHHHHHHH
Q psy10295 46 LLSAAMLYEGNVDEAWTTAGG 66 (115)
Q Consensus 46 ~vAa~mi~~Gm~ee~~~~a~~ 66 (115)
|+||.+.--|..|+|.++.+.
T Consensus 71 AlAAaLyI~G~~~~A~~lL~~ 91 (127)
T PF04034_consen 71 ALAAALYILGFKEQAEELLSK 91 (127)
T ss_pred HHHHHHHHcCCHHHHHHHHhc
Confidence 799999999999998887653
No 23
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.07 E-value=2.2e+02 Score=17.54 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=21.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10295 46 LLSAAMLYEGNVDEAWTTAGGLYRTV 71 (115)
Q Consensus 46 ~vAa~mi~~Gm~ee~~~~a~~~~~~~ 71 (115)
.+-..+++.|..|+|.+-++.+.+.+
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45678899999999999999888764
No 24
>PF08628 Nexin_C: Sorting nexin C terminal; InterPro: IPR013937 This region is found at the C terminus of proteins belonging to the nexin family. It is found on proteins which also contain IPR001683 from INTERPRO.
Probab=20.81 E-value=2.7e+02 Score=18.73 Aligned_cols=40 Identities=20% Similarity=0.107 Sum_probs=19.3
Q ss_pred cccccCCCCCccCCC-CCcccccchHHHHHHHHHHHcCChHH
Q psy10295 19 AVNGMKPNGDRDRSA-IQSEEVWTGVTYLLSAAMLYEGNVDE 59 (115)
Q Consensus 19 avNg~~p~G~~d~~~-~qs~EvWtGv~y~vAa~mi~~Gm~ee 59 (115)
+-+.+||||+.-.+. +.+.|-=- -+-.-|-..++..+.|.
T Consensus 47 l~~~lwP~g~~~~~~~~Rt~~ek~-~tr~~A~~~L~~~~P~~ 87 (113)
T PF08628_consen 47 LRESLWPNGKLAEPPPPRTEEEKL-RTRQEARELLLSLLPDT 87 (113)
T ss_pred HHHhhCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHhcHHH
Confidence 446789999654332 33332221 22334444455555554
No 25
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=20.65 E-value=1.4e+02 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy10295 43 VTYLLSAAMLYEGNVDEAWTTA 64 (115)
Q Consensus 43 v~y~vAa~mi~~Gm~ee~~~~a 64 (115)
+|+..|-.|+.-+..|+|+.+=
T Consensus 7 iE~~AAllml~~n~vekAl~iN 28 (69)
T PF10942_consen 7 IELTAALLMLKFNDVEKALKIN 28 (69)
T ss_pred HHHHHHHHHHHHccHHHHHHHH
Confidence 6888999999999999998764
Done!