Query psy10295
Match_columns 115
No_of_seqs 101 out of 166
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 22:48:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10295.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10295hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c68_A Uncharacterized protein 68.2 21 0.00073 31.1 8.2 47 38-88 684-733 (761)
2 2okx_A Rhamnosidase B; alpha b 45.7 56 0.0019 28.9 7.1 72 37-112 799-879 (956)
3 3gt5_A N-acetylglucosamine 2-e 27.9 1.1E+02 0.0037 23.8 5.5 54 16-73 289-344 (402)
4 2gz6_A N-acetyl-D-glucosamine 22.3 2E+02 0.007 21.6 6.0 65 16-81 279-351 (388)
5 2jg0_A Periplasmic trehalase; 19.6 96 0.0033 25.7 3.8 50 39-88 422-471 (535)
6 3q4o_A Uncharacterized protein 18.7 54 0.0018 24.4 1.9 19 58-77 37-55 (196)
7 2vxg_A LD41624, GE-1, CG6181-P 17.5 70 0.0024 22.2 2.2 17 49-65 8-24 (139)
8 1yqh_A DUF77, IG hypothetical 17.3 91 0.0031 20.7 2.6 22 54-76 51-72 (109)
9 2ju0_B Phosphatidylinositol 4- 15.5 1.3E+02 0.0044 17.8 2.7 30 60-92 4-33 (52)
10 1lxj_A YBL001C, hypothetical 1 14.9 91 0.0031 20.4 2.1 23 54-77 50-72 (104)
No 1
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=68.24 E-value=21 Score=31.12 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=37.3
Q ss_pred cccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh---hcCccccCCcccccC
Q psy10295 38 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYE---RTGLGFETPEGLTGD 88 (115)
Q Consensus 38 EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~---~~G~~~~tPea~~~~ 88 (115)
.||++++|-++..|...|..++|.++++.+++. +. +.| --+|.|+..
T Consensus 684 pvW~~~~~lli~aL~~~G~~d~A~~l~~~~~~~-~~~~~~~G---~~~E~yd~~ 733 (761)
T 3c68_A 684 RVWVDQFWFGLKGMERYGYRDDALKLADTFFRH-AKGLTADG---PIQENYNPL 733 (761)
T ss_dssp CEEHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTTTSSS---CCCSEECTT
T ss_pred CcccchHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHhhCC---ceeeEecCC
Confidence 699999999999999999999999999998875 22 123 345666665
No 2
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=45.70 E-value=56 Score=28.87 Aligned_cols=72 Identities=10% Similarity=-0.019 Sum_probs=51.1
Q ss_pred ccccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCccccCCcccccCCc-------c--ccCcccchhHHHHHHH
Q psy10295 37 EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGDKT-------Y--RSGGYMRALAVYAMQD 107 (115)
Q Consensus 37 ~EvWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~~tPea~~~~~~-------~--r~~~Y~R~laiWa~~~ 107 (115)
..+|+ .+-++..+...|..++|+++++..|....+ .|. -.-||.|+.... + ...|+.-+..+..|+.
T Consensus 799 Gt~w~--~~~li~aLar~G~~d~A~~ll~~~~~~~~~-~g~-tt~~E~~d~~~~~~~~~~~~~~s~nh~Wsag~~~~L~q 874 (956)
T 2okx_A 799 GSPFM--SFFYYEALEKAGRQTLMLDDIRRNYGQMLR-YDA-TTCWEMYPNFAENRSNPDMLTRSHCHAWSAAPGYFLGS 874 (956)
T ss_dssp CSHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTC-SSCCSSCSSCCTTSSSTTSSCSCSCCGGGCTHHHHHHH
T ss_pred CChhH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-cCC-CccceeccCCCCCcccCCCcccccCcHHHHHHHHHHHH
Confidence 46885 477888888999999999999998876544 564 355888875421 2 3468877766666777
Q ss_pred HHccc
Q psy10295 108 AYLKG 112 (115)
Q Consensus 108 Al~~~ 112 (115)
.+.|+
T Consensus 875 ~l~GI 879 (956)
T 2okx_A 875 SILGV 879 (956)
T ss_dssp TTSCE
T ss_pred HhcCc
Confidence 66654
No 3
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=27.88 E-value=1.1e+02 Score=23.82 Aligned_cols=54 Identities=22% Similarity=0.423 Sum_probs=39.9
Q ss_pred ccccccccCCCCCccCCCCCcccccchHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHh
Q psy10295 16 SMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE--GNVDEAWTTAGGLYRTVYE 73 (115)
Q Consensus 16 ~~GavNg~~p~G~~d~~~~qs~EvWtGv~y~vAa~mi~~--Gm~ee~~~~a~~~~~~~y~ 73 (115)
..|+++.+.++|+|. ...+..|+-.+.-+|+.++++ |. ++-++.++.+++-+++
T Consensus 289 ~Gg~~~~~d~~g~~~---~~~k~~W~qaEal~a~l~ly~~tgd-~~yl~~a~~~~~~~~~ 344 (402)
T 3gt5_A 289 RGGLCYGFAPDGTIC---DDDKYFWVQAESLAAAALLATRSGD-ERYWQWYDRLWAYAWQ 344 (402)
T ss_dssp TCSBCSEECTTSCEE---ECCEEHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCee---eCCcceeHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHH
Confidence 468889888999874 356699999998888877765 44 3457777777766554
No 4
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=22.28 E-value=2e+02 Score=21.61 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=39.3
Q ss_pred ccccccccCCCCCccCCCC-CcccccchHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHh-----hcCccccC
Q psy10295 16 SMGAVNGMKPNGDRDRSAI-QSEEVWTGVTYLLSAAMLYE--GNVDEAWTTAGGLYRTVYE-----RTGLGFET 81 (115)
Q Consensus 16 ~~GavNg~~p~G~~d~~~~-qs~EvWtGv~y~vAa~mi~~--Gm~ee~~~~a~~~~~~~y~-----~~G~~~~t 81 (115)
..|+.+...++|.|..... .+.-.|+..+..+|..+.++ |. ++-++.++.+++-+++ +.|.+|..
T Consensus 279 ~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd-~~yl~~a~~~~~~~~~~~~D~~~G~w~~~ 351 (388)
T 2gz6_A 279 YGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGR-DACWAWYQKMHDYSWQHFADPEYGEWFGY 351 (388)
T ss_dssp TCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHBCTTTSSBCCE
T ss_pred CCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhCcCCCCCceEEe
Confidence 3677787888887653111 33457888888888777653 54 3335666666655443 25666543
No 5
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=19.62 E-value=96 Score=25.69 Aligned_cols=50 Identities=10% Similarity=0.084 Sum_probs=38.6
Q ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcCccccCCcccccC
Q psy10295 39 VWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTGLGFETPEGLTGD 88 (115)
Q Consensus 39 vWtGv~y~vAa~mi~~Gm~ee~~~~a~~~~~~~y~~~G~~~~tPea~~~~ 88 (115)
||+=++|-++..+..-|..++|.++++...+.+.+.+.-.-.-||-++..
T Consensus 422 vW~~~~~l~i~gL~~yG~~~~A~~la~~~l~~~~~~~~~~G~l~E~yd~~ 471 (535)
T 2jg0_A 422 GWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVS 471 (535)
T ss_dssp ECHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHSSCBSCEETT
T ss_pred cchhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCeeeeeECCC
Confidence 99999999999999999999999999888777653110012467888876
No 6
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=18.68 E-value=54 Score=24.43 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhhcCc
Q psy10295 58 DEAWTTAGGLYRTVYERTGL 77 (115)
Q Consensus 58 ee~~~~a~~~~~~~y~~~G~ 77 (115)
|| .++|+.+|..+|+++|+
T Consensus 37 EE-EklArdvY~~l~e~~g~ 55 (196)
T 3q4o_A 37 EE-EKLARDVYLTLYNKWKL 55 (196)
T ss_dssp HH-HHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHHHHhCC
Confidence 44 68999999999998885
No 7
>2vxg_A LD41624, GE-1, CG6181-PA, isoform A; decapping, EDC4, hedls, mRNA decay, P-BODY, gene regulation; 1.9A {Drosophila melanogaster}
Probab=17.53 E-value=70 Score=22.24 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=14.3
Q ss_pred HHHHHcCChHHHHHHHH
Q psy10295 49 AAMLYEGNVDEAWTTAG 65 (115)
Q Consensus 49 a~mi~~Gm~ee~~~~a~ 65 (115)
..++++|..||||.-|=
T Consensus 8 ~~Ll~~g~~eeAf~~aL 24 (139)
T 2vxg_A 8 KQLLMAGQINKAFHQAL 24 (139)
T ss_dssp HHHHHHTCHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH
Confidence 46899999999998763
No 8
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=17.28 E-value=91 Score=20.75 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.6
Q ss_pred cCChHHHHHHHHHHHHHHHhhcC
Q psy10295 54 EGNVDEAWTTAGGLYRTVYERTG 76 (115)
Q Consensus 54 ~Gm~ee~~~~a~~~~~~~y~~~G 76 (115)
||..+|-|++++.+++.+++ .|
T Consensus 51 EGe~devm~vv~~~~e~~~~-~G 72 (109)
T 1yqh_A 51 EGELDVLLDVVKRAQQACVD-AG 72 (109)
T ss_dssp EECHHHHHHHHHHHHHHHHH-TT
T ss_pred EcCHHHHHHHHHHHHHHHHH-cC
Confidence 78899999999999999887 45
No 9
>2ju0_B Phosphatidylinositol 4-kinase PIK1; EF-hand, calcium, ptdins 4-kinase, frequenin, yeast, lipoprotein, membrane, myristate, nucleus; NMR {Saccharomyces cerevisiae}
Probab=15.46 E-value=1.3e+02 Score=17.82 Aligned_cols=30 Identities=13% Similarity=0.153 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhcCccccCCcccccCCccc
Q psy10295 60 AWTTAGGLYRTVYERTGLGFETPEGLTGDKTYR 92 (115)
Q Consensus 60 ~~~~a~~~~~~~y~~~G~~~~tPea~~~~~~~r 92 (115)
||++++.+++.+- -+-|.+++.......||
T Consensus 4 ~Fqv~Rr~~NklQ---~ilFn~~~~~~~~~k~~ 33 (52)
T 2ju0_B 4 GFQVARRVLNNLQ---TNLFNTSSGSDKNVKIH 33 (52)
T ss_dssp TTHHHHHHHHHHT---CCSSCSSCCCCTTCCSS
T ss_pred hhHHHHHHHHHHH---HHHhCCCccccchHHhh
Confidence 6999999999863 44587776533333443
No 10
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=14.87 E-value=91 Score=20.43 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=19.9
Q ss_pred cCChHHHHHHHHHHHHHHHhhcCc
Q psy10295 54 EGNVDEAWTTAGGLYRTVYERTGL 77 (115)
Q Consensus 54 ~Gm~ee~~~~a~~~~~~~y~~~G~ 77 (115)
||..+|-|++++.+++.+.+ .|.
T Consensus 50 EGe~devm~vv~~~~e~~~~-~G~ 72 (104)
T 1lxj_A 50 EGPWDDVMGLIGEIHEYGHE-KGY 72 (104)
T ss_dssp EEEHHHHHHHHHHHHHHHHH-TTC
T ss_pred EcCHHHHHHHHHHHHHHHHH-cCC
Confidence 78899999999999999887 453
Done!