RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10295
         (115 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 29.6 bits (66), Expect = 0.23
 Identities = 23/132 (17%), Positives = 36/132 (27%), Gaps = 45/132 (34%)

Query: 12   FEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSA------AML---Y--------E 54
            FE    G +   K   + +  +  +   +     LLSA      A+             +
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHS--TSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750

Query: 55   GNVDEAWTTAG---GLY----------------RTVYERTG--LGFETPEGLTGDKTYRS 93
            G +    T AG   G Y                  V+ R G  +    P    G   Y  
Sbjct: 1751 GLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR-GMTMQVAVPRDELGRSNYG- 1808

Query: 94   GGYMRALAVYAM 105
               M A+    +
Sbjct: 1809 ---MIAINPGRV 1817


>3fro_A GLGA glycogen synthase; glycosyltransferase family,
           UDP/ADP-glucose-glycogen synthas rossman folds,
           transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB:
           2bis_A* 3l01_A*
          Length = 439

 Score = 26.7 bits (60), Expect = 1.9
 Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 9/49 (18%)

Query: 65  GGLYRTVYERTGLGFE--TPEGLTGDKTYRSGGYMRALAVYAMQDAYLK 111
           GGL   +   TG+  +   P  L           ++AL +     +  +
Sbjct: 363 GGLRDIITNETGILVKAGDPGELA-------NAILKALELSRSDLSKFR 404


>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
           structure initiati midwest center for structural
           genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
           gingivalis}
          Length = 303

 Score = 25.5 bits (55), Expect = 5.5
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 19  AVNGMKPNGDRDRSAIQSEEVWTGVTY 45
            VN +  +G      + +   W GVTY
Sbjct: 252 VVNDLIRSGRASVEVLDTTARWFGVTY 278


>3ef8_A Putative scyalone dehydratase; YP_496742.1, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE PGE
           PG4; 1.50A {Novosphingobium aromaticivorans DSM12444}
           SCOP: d.17.4.28
          Length = 150

 Score = 25.2 bits (55), Expect = 5.6
 Identities = 5/43 (11%), Positives = 11/43 (25%), Gaps = 3/43 (6%)

Query: 34  IQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTVYERTG 76
             SE      + +L    ++    +       G Y     +  
Sbjct: 81  FVSETEANVRSVVL---AIHRYTKERPDGILYGQYFDTVVKVD 120


>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside
           hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ;
           1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A*
           2jjb_A* 2wyn_A*
          Length = 535

 Score = 25.2 bits (54), Expect = 7.1
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 3/64 (4%)

Query: 39  VWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRTV---YERTGLGFETPEGLTGDKTYRSGG 95
            W  + ++ +  +   G  + A   +      V   Y+R     E  +  T       G 
Sbjct: 422 GWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGGGGE 481

Query: 96  YMRA 99
           Y   
Sbjct: 482 YPLQ 485


>2i00_A Acetyltransferase, GNAT family; structural genomics, PSI-2,
           structure initiative, midwest center for structural
           genomic transferase; 2.30A {Enterococcus faecalis} SCOP:
           d.106.1.4 d.108.1.10
          Length = 406

 Score = 24.8 bits (53), Expect = 8.6
 Identities = 5/25 (20%), Positives = 10/25 (40%)

Query: 88  DKTYRSGGYMRALAVYAMQDAYLKG 112
              Y + G M+ L   A+++     
Sbjct: 100 YPEYANHGLMKDLIQTALEEMRQDK 124


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0513    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,800,200
Number of extensions: 99461
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 12
Length of query: 115
Length of database: 6,701,793
Length adjustment: 78
Effective length of query: 37
Effective length of database: 4,523,955
Effective search space: 167386335
Effective search space used: 167386335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.9 bits)