RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10295
         (115 letters)



>d1usha1 d.114.1.1 (A:363-550) 5'-nucleotidase (syn. UDP-sugar
          hydrolase), C-terminal domain {Escherichia coli [TaxId:
          562]}
          Length = 188

 Score = 25.0 bits (54), Expect = 2.2
 Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 28 DRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGL 67
          + DR  ++  +  T +  L+ AA +     D A  + GG+
Sbjct: 10 EGDRDKVRFVQ--TNMGRLILAAQMDRTGADFAVMSGGGI 47


>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
           polymerases {Archaeon Thermococcus gorgonarius [TaxId:
           71997]}
          Length = 347

 Score = 25.2 bits (54), Expect = 2.4
 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 77  LGFETPEGLTGD---KTYRSGGYMRALAVYAMQDAYL 110
           +  +  E +  +   + + +G  +  +A Y+M+DA +
Sbjct: 282 IFGQPKEKVYAEEIAQAWETGEGLERVARYSMEDAKV 318


>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 166

 Score = 24.8 bits (54), Expect = 2.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 35 QSEEVWTGVTYLLSAAMLYEGNV 57
          Q+ EVW G+  L  A +  +  +
Sbjct: 59 QAVEVWQGLALLSEAVLRGQALL 81


>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
           (Rhodosporidium toruloides) [TaxId: 5286]}
          Length = 678

 Score = 23.4 bits (50), Expect = 9.0
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 67  LYRTVYERTGLGFETPEGLTGDKTYRSGGY 96
           LY  V E  G+     +   G +    G  
Sbjct: 627 LYAFVREELGVKARRGDVFLGKQEVTIGSN 656


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.130    0.379 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 416,819
Number of extensions: 16926
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 5
Length of query: 115
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,405,306
Effective search space: 59022852
Effective search space used: 59022852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.3 bits)