BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10296
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QQP|A Chain A, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|C Chain C, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|E Chain E, Crystal Structure Of Authentic Providence Virus
pdb|2QQP|G Chain G, Crystal Structure Of Authentic Providence Virus
Length = 556
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 57 GDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRVSGCE 110
GDR S Q +V+ G+T+ +A L +D+ W + + + + + E
Sbjct: 218 GDRTDSVTQFRKVYKGITFEFNAPTL----IDQGWWVGAHIPVKPQSETIPAAE 267
>pdb|1OBH|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Pre-Transfer Editing Substrate Analogue In Both
Synthetic Active Site And Editing Site
pdb|2BTE|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BTE|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
With A Trnaleu Transcript In The Post-Editing
Conformation And A Post-Transfer Editing Substrate
Analogue
pdb|2BYT|A Chain A, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|2BYT|D Chain D, Thermus Thermophilus Leucyl-Trna Synthetase Complexed With
A Trnaleu Transcript In The Post-Editing Conformation
pdb|1H3N|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate
pdb|1OBC|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Post-Transfer Editing Substrate Analogue
pdb|2V0G|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site.
pdb|2V0G|D Chain D, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Trna(Leu) Transcript With 5-Fluoro-1,3-Dihydro-1-
Hydroxy-2,1-Benzoxaborole (An2690) Forming An Adduct To
The Ribose Of Adenosine-76 In The Enzyme Editing Site
Length = 878
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 65 QSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRVSGCETA 112
++E VWT E V AW +YRR+ EDR + ET+
Sbjct: 671 ENEMVWT------------EEGVQGAWRFLNRIYRRVAEDREALLETS 706
>pdb|2V0C|A Chain A, Leucyl-Trna Synthetase From Thermus Thermophilus Complexed
With A Sulphamoyl Analogue Of Leucyl-Adenylate In The
Synthetic Site And An Adduct Of Amp With 5-Fluoro-1,3-
Dihydro-1-Hydroxy-2,1-Benzoxaborole (An2690) In The
Editing Site
Length = 878
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 12/48 (25%)
Query: 65 QSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRVSGCETA 112
++E VWT E V AW +YRR+ EDR + ET+
Sbjct: 671 ENEMVWT------------EEGVQGAWRFLNRIYRRVAEDREALLETS 706
>pdb|1XAT|A Chain A, Structure Of The Hexapeptide Xenobiotic Acetyltransferase
From Pseudomonas Aeruginosa
pdb|2XAT|A Chain A, Complex Of The Hexapeptide Xenobiotic Acetyltransferase
With Chloramphenicol And Desulfo-Coenzyme A
Length = 212
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
Query: 32 ATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLL 77
A+ F + E GAVNG +P GD + EVW G +
Sbjct: 84 ASTFPFHFMHEEPAFAGAVNGYQPAGD----TLIGHEVWIGTEAMF 125
>pdb|4EZB|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein
From Sinorhizobium Meliloti 1021
Length = 317
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 11 LKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVW 70
L A G N EA+ + A +L I S ++G EA + A++ + G +R +E +
Sbjct: 174 LNALGXNLEAVGETPGQASSLKXIRSVXIKGVEALLIEALSSAERAGVTERILDSVQETF 233
Query: 71 TGVTY 75
G+ +
Sbjct: 234 PGLDW 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,334,283
Number of Sequences: 62578
Number of extensions: 117112
Number of successful extensions: 212
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 209
Number of HSP's gapped (non-prelim): 5
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)