Query psy10296
Match_columns 116
No_of_seqs 100 out of 178
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 22:49:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10296.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10296hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2119|consensus 100.0 1.4E-45 3E-50 320.4 8.4 112 1-114 688-801 (879)
2 PF04685 DUF608: Protein of un 100.0 2.9E-44 6.2E-49 294.7 0.8 112 1-114 231-342 (365)
3 COG4354 Predicted bile acid be 100.0 1.3E-35 2.7E-40 254.4 10.2 108 1-114 582-690 (721)
4 PF07721 TPR_4: Tetratricopept 71.6 9.8 0.00021 19.4 3.5 24 72-95 2-25 (26)
5 KOG2429|consensus 61.3 10 0.00022 34.1 3.5 92 2-106 242-350 (622)
6 PF13428 TPR_14: Tetratricopep 54.2 37 0.0008 18.9 4.4 29 72-100 2-30 (44)
7 PF13174 TPR_6: Tetratricopept 51.5 31 0.00067 17.2 3.3 26 75-100 4-29 (33)
8 PF06202 GDE_C: Amylo-alpha-1, 51.3 1.4E+02 0.003 24.6 9.3 88 14-102 239-332 (370)
9 PRK15321 putative type III sec 50.7 25 0.00054 25.0 3.4 28 5-37 18-45 (120)
10 cd00249 AGE AGE domain; N-acyl 47.9 1.4E+02 0.003 23.7 8.1 89 9-103 244-336 (384)
11 PF08221 HTH_9: RNA polymerase 42.6 21 0.00045 22.2 1.9 22 22-43 39-60 (62)
12 PF07221 GlcNAc_2-epim: N-acyl 40.8 94 0.002 24.7 5.9 61 48-115 256-317 (346)
13 PF07720 TPR_3: Tetratricopept 39.5 47 0.001 18.6 2.9 20 74-93 4-23 (36)
14 KOG0723|consensus 39.2 39 0.00085 24.1 3.0 29 11-41 59-87 (112)
15 COG2942 N-acyl-D-glucosamine 2 35.1 1.3E+02 0.0029 25.7 6.1 98 9-115 245-345 (388)
16 PF03788 LrgA: LrgA family; I 33.4 86 0.0019 21.2 3.9 34 4-37 2-50 (96)
17 KOG4340|consensus 33.3 87 0.0019 26.8 4.6 40 70-115 177-216 (459)
18 PF07719 TPR_2: Tetratricopept 33.3 70 0.0015 16.0 3.9 27 73-99 3-29 (34)
19 PF07345 DUF1476: Domain of un 32.8 29 0.00063 24.3 1.5 15 3-17 30-44 (103)
20 PF07221 GlcNAc_2-epim: N-acyl 32.8 60 0.0013 25.8 3.5 51 49-103 2-54 (346)
21 PF14561 TPR_20: Tetratricopep 31.6 60 0.0013 21.5 2.9 29 72-100 23-51 (90)
22 PF13374 TPR_10: Tetratricopep 30.8 85 0.0018 16.2 3.8 28 75-102 6-33 (42)
23 PF13432 TPR_16: Tetratricopep 30.3 82 0.0018 18.3 3.1 24 75-98 1-24 (65)
24 cd06257 DnaJ DnaJ domain or J- 29.8 1E+02 0.0022 17.4 3.4 24 11-36 3-26 (55)
25 PF01204 Trehalase: Trehalase; 29.5 3.8E+02 0.0082 23.3 8.4 75 21-103 385-464 (512)
26 KOG3800|consensus 29.3 45 0.00099 27.6 2.3 25 90-116 24-48 (300)
27 PF14559 TPR_19: Tetratricopep 29.3 1.1E+02 0.0024 17.8 3.5 28 72-99 26-53 (68)
28 PRK10137 alpha-glucosidase; Pr 28.3 3.7E+02 0.0081 25.1 8.1 34 68-101 710-743 (786)
29 PF08708 PriCT_1: Primase C te 28.2 73 0.0016 19.7 2.7 20 20-39 51-70 (71)
30 PF04558 tRNA_synt_1c_R1: Glut 28.2 74 0.0016 23.7 3.1 28 10-39 107-134 (164)
31 PF12793 SgrR_N: Sugar transpo 27.9 2.1E+02 0.0046 19.9 5.8 64 22-95 31-94 (115)
32 PF13720 Acetyltransf_11: Udp 27.6 78 0.0017 20.8 2.9 29 80-109 22-50 (83)
33 PF05777 Acp26Ab: Drosophila a 27.6 36 0.00079 23.2 1.2 19 26-44 38-56 (90)
34 TIGR00106 uncharacterized prot 27.3 84 0.0018 21.3 3.1 23 83-106 44-66 (97)
35 COG3178 Predicted phosphotrans 27.0 2E+02 0.0044 24.3 5.7 93 4-104 161-267 (351)
36 PLN03005 beta-fructofuranosida 26.8 4.7E+02 0.01 23.5 9.2 89 6-103 382-484 (550)
37 cd00249 AGE AGE domain; N-acyl 25.9 3.4E+02 0.0073 21.5 7.9 52 48-103 34-87 (384)
38 COG4902 Uncharacterized protei 25.6 50 0.0011 25.2 1.8 22 86-108 57-78 (189)
39 TIGR03505 FimV_core FimV N-ter 25.2 73 0.0016 20.7 2.3 34 26-62 17-50 (74)
40 PF10942 DUF2619: Protein of u 25.0 1E+02 0.0023 20.2 3.0 22 73-94 7-28 (69)
41 COG5443 FlbT Flagellar biosynt 25.0 76 0.0017 23.6 2.6 37 79-115 102-141 (148)
42 PF01388 ARID: ARID/BRIGHT DNA 24.6 79 0.0017 20.4 2.5 28 11-42 64-91 (92)
43 PF04422 FrhB_FdhB_N: Coenzyme 24.4 61 0.0013 21.1 1.9 29 64-92 13-41 (82)
44 PF01910 DUF77: Domain of unkn 24.0 66 0.0014 21.6 2.0 23 83-106 42-64 (92)
45 TIGR03504 FimV_Cterm FimV C-te 23.0 1.7E+02 0.0037 17.1 3.4 26 74-99 2-27 (44)
46 smart00271 DnaJ DnaJ molecular 22.5 1.6E+02 0.0036 16.9 3.4 25 10-36 3-27 (60)
47 PF13308 YARHG: YARHG domain 22.3 42 0.00091 21.9 0.8 27 84-113 19-45 (81)
48 PLN02973 beta-fructofuranosida 22.2 5.9E+02 0.013 23.0 9.5 90 6-103 403-505 (571)
49 PF14689 SPOB_a: Sensor_kinase 22.0 2E+02 0.0044 17.6 4.0 28 76-103 28-55 (62)
50 COG1043 LpxA Acyl-[acyl carrie 21.9 62 0.0013 26.3 1.7 29 81-110 200-228 (260)
51 KOG0097|consensus 21.5 1.1E+02 0.0024 23.4 2.9 29 87-116 162-190 (215)
52 PF13181 TPR_8: Tetratricopept 21.1 1.3E+02 0.0028 15.1 4.1 25 75-99 5-29 (34)
53 PF13170 DUF4003: Protein of u 21.0 2.4E+02 0.0052 22.8 5.0 34 72-106 58-92 (297)
54 PF09976 TPR_21: Tetratricopep 20.7 1.1E+02 0.0024 21.1 2.7 28 73-100 87-114 (145)
55 PF09061 Stirrup: Stirrup; In 20.5 77 0.0017 20.9 1.7 25 6-37 41-65 (79)
56 PF12968 DUF3856: Domain of Un 20.4 2.7E+02 0.0058 20.7 4.6 39 68-106 97-135 (144)
57 PRK02999 malate synthase G; Pr 20.4 4.5E+02 0.0097 24.5 7.0 65 2-87 639-703 (726)
58 PF08424 NRDE-2: NRDE-2, neces 20.2 1.6E+02 0.0036 23.6 3.9 41 62-102 145-185 (321)
59 PF01877 RNA_binding: RNA bind 20.0 59 0.0013 22.8 1.2 13 23-35 14-26 (120)
No 1
>KOG2119|consensus
Probab=100.00 E-value=1.4e-45 Score=320.38 Aligned_cols=112 Identities=46% Similarity=0.752 Sum_probs=110.7
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHH
Q psy10296 1 MADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAA 80 (116)
Q Consensus 1 maDQL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~ 80 (116)
|||||||||||+.|||+ +|+|++||||||++||++||++|.+|++||||||.|+|+||.+++||+|||+||+|+|||.
T Consensus 688 maDQlaGqWy~~a~gl~--~i~~~~~vrsAL~tIy~~NVm~~~~G~~GAVNGm~p~G~VD~ssiQS~EvW~GvtYalAAt 765 (879)
T KOG2119|consen 688 MADQLAGQWYARACGLP--PIFPEEKVRSALDTIYDFNVMKFKGGRMGAVNGMLPSGKVDTSSIQSREVWAGVTYALAAT 765 (879)
T ss_pred HHHhHhhHHHHHhcCCC--ccCchHHHHHHHHHHHhhceeeecCCceeccccccCCCccccccceehhhhccHHHHHHHH
Confidence 89999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhHhc--CCccccCCCC
Q psy10296 81 MLYEGNVDEAWTTAGGLYRRLRED--RVSGCETAPE 114 (116)
Q Consensus 81 mi~~G~~eeg~~i~~~~~~~~~~~--~g~~f~tPE~ 114 (116)
||++||.|+||++|+++|+++|++ +|++|||||+
T Consensus 766 MIqeG~~e~~FqTA~G~y~~~w~~~glg~~FqTPEa 801 (879)
T KOG2119|consen 766 MIQEGLVEKGFQTASGIYEAIWSETGLGYAFQTPEA 801 (879)
T ss_pred HHHHhhHHhhhhhhhhhHHHHhhhcccceEEECchh
Confidence 999999999999999999999999 7999999997
No 2
>PF04685 DUF608: Protein of unknown function, DUF608; InterPro: IPR006775 This domain is found in non-lysosomal glucosylceramidases that catalyze the conversion of glucosylceramide to free glucose and ceramide []. It is involved in sphingomyelin generation and prevention of glycolipid accumulation and may also catalyze the hydrolysis of bile acid 3-O-glucosides, however, the relevance of such activity is unclear in vivo []. ; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0016021 integral to membrane; PDB: 1V7V_A 1V7W_A 1V7X_A.
Probab=100.00 E-value=2.9e-44 Score=294.68 Aligned_cols=112 Identities=40% Similarity=0.668 Sum_probs=43.6
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHH
Q psy10296 1 MADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAA 80 (116)
Q Consensus 1 maDQL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~ 80 (116)
|+|||+|||||++|||+ +|+|+|||+|||++||++||+.+.++++|++||++|+|+|+.+++|++||||||+|++|||
T Consensus 231 ~aDQl~Gqw~a~~~gl~--~v~~~e~v~sAL~sI~~~N~~~~~~~~~G~~n~~~p~g~~~~~~~q~~evW~G~~y~~Aa~ 308 (365)
T PF04685_consen 231 MADQLCGQWWARLLGLG--DVLDEEKVKSALRSIYEYNVKYFLGGEMGAVNGVWPDGKPDTSSPQSNEVWTGVEYAVAAH 308 (365)
T ss_dssp -TT-SS--EEHHHHHHT--T-S-HHHHHHHHHHHHHHHEE-S-BTTTBGGGGS-T-------------------------
T ss_pred EeChhhHHHHHHHcCCc--CCCCHHHHHHHHHHHHHhcCeEccCCCCcEEEeeecccccccccccccccccccccccccc
Confidence 79999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHHHhHhcCCccccCCCC
Q psy10296 81 MLYEGNVDEAWTTAGGLYRRLREDRVSGCETAPE 114 (116)
Q Consensus 81 mi~~G~~eeg~~i~~~~~~~~~~~~g~~f~tPE~ 114 (116)
||++||.+||++|+++||++++++.|++|||||+
T Consensus 309 mi~~G~~~e~~~~~~~~~~~~~~~~g~~f~~pE~ 342 (365)
T PF04685_consen 309 MIQEGMVEEGLEIAKGIYDRYYGRKGNPFNTPEA 342 (365)
T ss_dssp ----------------------------------
T ss_pred cccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999889999999998
No 3
>COG4354 Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-35 Score=254.43 Aligned_cols=108 Identities=27% Similarity=0.511 Sum_probs=105.5
Q ss_pred ChhhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccC-CCCCCCcccchHHHHHHH
Q psy10296 1 MADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDR-SAIQSEEVWTGVTYLLSA 79 (116)
Q Consensus 1 maDQL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~-~~~qs~EvWtGv~Y~lAa 79 (116)
||||||||||++++||| +|+|.++++|||+|||++||.. ++.|++|+++|||+|+. .+.|+.||||||+|++||
T Consensus 582 lAsQL~Gqfy~~LLgLp--divdhd~~ksal~sIy~lnf~~---~~~~~~n~v~~dgsp~n~~svq~~s~W~gi~F~laa 656 (721)
T COG4354 582 LASQLCGQFYATLLGLP--DIVDHDKIKSALESIYDLNFNA---SEYCAANGVRPDGSPVNPLSVQPLSVWPGINFALAA 656 (721)
T ss_pred hHHHHHhHHHHHHcCCC--cccchHHHHHHHHHHHhhcccc---ccccccCccCCCCCcCCcccccccccccchHHHHHH
Confidence 79999999999999999 9999999999999999999998 89999999999999998 789999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHhHhcCCccccCCCC
Q psy10296 80 AMLYEGNVDEAWTTAGGLYRRLREDRVSGCETAPE 114 (116)
Q Consensus 80 ~mi~~G~~eeg~~i~~~~~~~~~~~~g~~f~tPE~ 114 (116)
||+++||.||++++++.+|+++++ +|++|+|||+
T Consensus 657 ~m~~~Gm~de~~~~~e~~w~~l~~-ng~~fr~p~a 690 (721)
T COG4354 657 HMIQMGMKDEGFELAENVWNQLKN-NGLQFRQPSA 690 (721)
T ss_pred HHHHhcchhhhhHHHHHHHHHHHh-CCcccCChhh
Confidence 999999999999999999999999 9999999986
No 4
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.62 E-value=9.8 Score=19.38 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHH
Q psy10296 72 GVTYLLSAAMLYEGNVDEAWTTAG 95 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~~eeg~~i~~ 95 (116)
...+.+|..+...|..++|.++.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456889999999999999988764
No 5
>KOG2429|consensus
Probab=61.29 E-value=10 Score=34.05 Aligned_cols=92 Identities=22% Similarity=0.270 Sum_probs=60.8
Q ss_pred hhhhHHHHHHHhcCCCCC------------CCCCh----hHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCC
Q psy10296 2 ADQLCGYLFLKASGVNTE------------AIFPS----ANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQ 65 (116)
Q Consensus 2 aDQL~Gqw~a~~~GL~~~------------~v~~~----~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~q 65 (116)
.|-+.|+|.+...|++.. -++.. +.-..|.++|-+|.=+. . =.+|-.--+|++..+-+|
T Consensus 242 idV~tG~W~~~~sGIGAgiDSfyEYllK~yILfgd~e~lemf~ea~~ai~~y~r~~----~-wY~~V~m~~G~v~~p~~d 316 (622)
T KOG2429|consen 242 IDVQTGEWTAPDSGIGAGIDSFYEYLLKGYILFGDPELLEMFNEAYEAIQKYTRKG----P-WYVNVNMDSGSVSLPWFD 316 (622)
T ss_pred eeccccceeccccccccchHHHHHHHHHHheecCCHHHHHHHHHHHHHHHHHhhcC----C-eEEEEecCCCceehHHHh
Confidence 356789999999999810 12222 34556666666553222 1 244555567888777777
Q ss_pred C-CcccchHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 66 S-EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 66 s-~EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
| +..|+|+ ..+.|.+|.|.++- ..|=.+|++.|
T Consensus 317 SLqAfwpGl-------qvLaGDvd~A~~~h-~~y~~vwkkyG 350 (622)
T KOG2429|consen 317 SLQAFWPGL-------QVLAGDVDDAIRTH-LMYFSVWKKYG 350 (622)
T ss_pred hHHhhccch-------hhhhcchHHHHHHH-HHHHHHHHHcC
Confidence 7 5799997 46789999988765 45666788876
No 6
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=54.23 E-value=37 Score=18.91 Aligned_cols=29 Identities=21% Similarity=-0.009 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 72 GVTYLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
.+-+.+|..++..|..++|.++.+.+...
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678999999999999998887776654
No 7
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=51.48 E-value=31 Score=17.22 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 75 YLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 75 Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
|.+|......|..++|.++.+.+.++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 67788888889999988887776654
No 8
>PF06202 GDE_C: Amylo-alpha-1,6-glucosidase ; InterPro: IPR010401 This family includes human glycogen branching enzyme P35573 from SWISSPROT. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homologue O93808 from SWISSPROT that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (3.2.1.33 from EC).; GO: 0004135 amylo-alpha-1,6-glucosidase activity, 0005978 glycogen biosynthetic process
Probab=51.25 E-value=1.4e+02 Score=24.62 Aligned_cols=88 Identities=16% Similarity=0.255 Sum_probs=51.4
Q ss_pred cCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccc-cCCCC--CCCccC--CCCCCCcccchHHHHHHHHHHHcCC-h
Q psy10296 14 SGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAV-NGMKP--NGDRDR--SAIQSEEVWTGVTYLLSAAMLYEGN-V 87 (116)
Q Consensus 14 ~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~-Ng~~p--~G~~~~--~~~qs~EvWtGv~Y~lAa~mi~~G~-~ 87 (116)
+.|+ ..++++++.+++|+.+-+.-+..+.=-.+..- ...+| +|.++. .+-+--.||+=.+=-.+..++.-|. .
T Consensus 239 ~~L~-~~~l~~~~a~~vl~~~~~~L~tp~GlRTLs~~~~~Y~p~y~g~~~~rd~sYHnGsvWpw~~g~~~~al~r~g~~~ 317 (370)
T PF06202_consen 239 LSLP-PGLLDPEQAKKVLDRVEEELLTPWGLRTLSPSDPRYNPIYEGDQDSRDMSYHNGSVWPWDNGIYAEALLRYGFDE 317 (370)
T ss_pred HhcC-CccCCHHHHHHHHHHHHHHcCCCCchhcccCCCCCcCCCCCCccccCcccccCCCcCcCcHHHHHHHHHHhCccc
Confidence 3453 36999999999999875544444210011100 12223 232222 1223339999777777777888888 4
Q ss_pred HHHHHHHHHHHHHhH
Q psy10296 88 DEAWTTAGGLYRRLR 102 (116)
Q Consensus 88 eeg~~i~~~~~~~~~ 102 (116)
+++.+.++.+.+.+.
T Consensus 318 ~~~~~~~~~ll~~~~ 332 (370)
T PF06202_consen 318 EEAIREAKSLLEGFE 332 (370)
T ss_pred hHHHHHHHHHHHHHH
Confidence 777777777776543
No 9
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=50.67 E-value=25 Score=24.97 Aligned_cols=28 Identities=11% Similarity=0.234 Sum_probs=23.4
Q ss_pred hHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh
Q psy10296 5 LCGYLFLKASGVNTEAIFPSANIARALATIFST 37 (116)
Q Consensus 5 L~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~ 37 (116)
|.--||-+++.|| ++.+.+..| .+||+.
T Consensus 18 lydAF~Q~l~~LP--~la~S~~~K---D~I~q~ 45 (120)
T PRK15321 18 LYDAFYQRLLALP--ESASSETLK---DSIYQE 45 (120)
T ss_pred HHHHHHHHHHhCC--cccCcHHHH---HHHHHH
Confidence 4567889999999 899999988 778773
No 10
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=47.87 E-value=1.4e+02 Score=23.71 Aligned_cols=89 Identities=12% Similarity=0.055 Sum_probs=50.8
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccc-ccc-CCCCCCCccCCCCCCCcccchHHHHHHHHHHHc--
Q psy10296 9 LFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMG-AVN-GMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE-- 84 (116)
Q Consensus 9 w~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~G-a~N-g~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~-- 84 (116)
|.-.++-|- .+.+.+......+.|++.-...+.....| ... ....+|.|. ....-.|+=.|...|...+.+
T Consensus 244 ~a~~ll~l~--~~~~~~~~~~~a~~~~~~~~~~~~d~~~G~~~~~~~~~~~~~~---~~~~~~w~~~E~~~a~~~l~~~t 318 (384)
T cd00249 244 WAWLLLRIA--SRSGQAWLIEKARRLFDLALALGWDPERGGLYYSFLDDGGLLE---DDDKRWWPQTEALKAALALAGIT 318 (384)
T ss_pred HHHHHHHHH--hhcCCHHHHHHHHHHHHHHHHhCcCccCCCEEEeeECCCCCcc---cccccccHHHHHHHHHHHHHHhc
Confidence 333344444 56677777778888888766665444444 334 333344332 224456776666666555432
Q ss_pred CChHHHHHHHHHHHHHhHh
Q psy10296 85 GNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 85 G~~eeg~~i~~~~~~~~~~ 103 (116)
|. ++-++.++.+++.+++
T Consensus 319 gd-~~~~~~~~~~~~~~~~ 336 (384)
T cd00249 319 GD-ERYWQWYQRAWAYLWR 336 (384)
T ss_pred CC-HHHHHHHHHHHHHHHH
Confidence 43 4456677777777766
No 11
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=42.56 E-value=21 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.342 Sum_probs=18.2
Q ss_pred CChhHHHHHHHHHHHhhccccC
Q psy10296 22 FPSANIARALATIFSTNVRGFE 43 (116)
Q Consensus 22 ~~~~~v~sAL~sI~~~N~~~~~ 43 (116)
+|+++|+++|-...++|+..|.
T Consensus 39 l~~~~Vk~~L~~LiQh~~v~y~ 60 (62)
T PF08221_consen 39 LSPKQVKKALVVLIQHNLVQYF 60 (62)
T ss_dssp --HHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHcCCeeee
Confidence 6799999999999999998763
No 12
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=40.85 E-value=94 Score=24.70 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=40.1
Q ss_pred ccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhcCCccccCCCCC
Q psy10296 48 GAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEG-NVDEAWTTAGGLYRRLREDRVSGCETAPEG 115 (116)
Q Consensus 48 Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~G-~~eeg~~i~~~~~~~~~~~~g~~f~tPE~~ 115 (116)
|..+.+.++|+|.. .+.--|+=.|.-.|..+.++- -.++.++.++.+++-+++ .|..||-|
T Consensus 256 G~~~~~d~~g~~~~---~~k~wW~q~Eal~a~~~~~~~tg~~~~~~~~~~~~~~~~~----~~~d~~~G 317 (346)
T PF07221_consen 256 GLFYSVDRDGKPPD---RSKRWWPQAEALKALLAAYELTGDEKYLDWARRVWDYIFR----HFIDPEYG 317 (346)
T ss_dssp SB-SEEETTS-BSS---T-EEHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH----HTB-TTTS
T ss_pred eEEEEEeCCCCccc---cCccccHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH----hCCCCCCC
Confidence 57777778887663 445689999988888777653 456678888888887776 45555544
No 13
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=39.48 E-value=47 Score=18.56 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=17.1
Q ss_pred HHHHHHHHHHcCChHHHHHH
Q psy10296 74 TYLLSAAMLYEGNVDEAWTT 93 (116)
Q Consensus 74 ~Y~lAa~mi~~G~~eeg~~i 93 (116)
-|++|+..-+.|..++|.++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 48899999999999999887
No 14
>KOG0723|consensus
Probab=39.16 E-value=39 Score=24.11 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=24.8
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhccc
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVRG 41 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~ 41 (116)
+.+||+. +-+++++||.|-+.|+=.|-..
T Consensus 59 ~lIL~v~--~s~~k~KikeaHrriM~~NHPD 87 (112)
T KOG0723|consen 59 ALILGVT--PSLDKDKIKEAHRRIMLANHPD 87 (112)
T ss_pred HHHhCCC--ccccHHHHHHHHHHHHHcCCCc
Confidence 5678887 8999999999999999887543
No 15
>COG2942 N-acyl-D-glucosamine 2-epimerase [Carbohydrate transport and metabolism]
Probab=35.08 E-value=1.3e+02 Score=25.72 Aligned_cols=98 Identities=15% Similarity=0.184 Sum_probs=60.5
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHHhhccc-cCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHcCC-
Q psy10296 9 LFLKASGVNTEAIFPSANIARALATIFSTNVRG-FEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGN- 86 (116)
Q Consensus 9 w~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~-~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~G~- 86 (116)
|.-.++.+. .....+...-+.++.|+.=... ..-..-|+.+..-+||+|..+ ..=.|+=.|+.=|+..+.++-
T Consensus 245 W~~Lll~~a--~~~~~~~l~~~A~~lf~~a~~~g~d~~~gg~~~sl~~D~~~~d~---~~r~WpQ~E~l~AA~ala~~~~ 319 (388)
T COG2942 245 WAWLLLDIA--RRRGRAWLIEAARRLFDIAVADGWDPERGGAYYSLDDDGSPHDR---QQRLWPQTEALKAAVALAETTG 319 (388)
T ss_pred HHHHHHHHH--HHhchhHHHHHHHHHHHHHHHhccCcccCeEEEEecCCCCcCCH---HHhhChHHHHHHHHHHHHhcCC
Confidence 333344444 4445566666666676654442 111334788899999988842 235699999988888777643
Q ss_pred -hHHHHHHHHHHHHHhHhcCCccccCCCCC
Q psy10296 87 -VDEAWTTAGGLYRRLREDRVSGCETAPEG 115 (116)
Q Consensus 87 -~eeg~~i~~~~~~~~~~~~g~~f~tPE~~ 115 (116)
.+.-++....+++-++. .|.+||-|
T Consensus 320 ~~~~y~~~~~R~~~~~~~----hl~d~~~G 345 (388)
T COG2942 320 ARERYWQWYARAWDYLWW----HLDDPEYG 345 (388)
T ss_pred chHHHHHHHHHHHHHHHH----hcCCCcCC
Confidence 45556666666666655 46666655
No 16
>PF03788 LrgA: LrgA family; InterPro: IPR005538 This family is represented by: YohJ, an inner membrane protein with four predicted transmembrane domains; the C terminus is located in the periplasm []. LrgA, a protein that has been hypothesised to export murein hydrolases []. In Staphylococcus aureus, lrg and cid operons encode homologous proteins that regulate extracellular murein hydrolase activity and penicillin tolerance [, ]. Since the proteins encoded by cidA and lrgA are so similar to the bacteriophage-encoded holin family of proteins, they are considered analogous []. The proteins in this entry are functionally uncharacterised.; GO: 0016021 integral to membrane
Probab=33.37 E-value=86 Score=21.24 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=25.2
Q ss_pred hhHHHHHHHhcCCC---------------CCCCCChhHHHHHHHHHHHh
Q psy10296 4 QLCGYLFLKASGVN---------------TEAIFPSANIARALATIFST 37 (116)
Q Consensus 4 QL~Gqw~a~~~GL~---------------~~~v~~~~~v~sAL~sI~~~ 37 (116)
|++|+|.++.+++| ...+++.++++++-+...++
T Consensus 2 ~~~G~~i~~~l~lpiPgsviGmllL~~~L~~~~vk~~~i~~~a~~Ll~~ 50 (96)
T PF03788_consen 2 QLLGEWISRLLPLPIPGSVIGMLLLFLLLMFKIVKLEWIEPAANFLLKN 50 (96)
T ss_pred chHHHHHHHHcCCCCChHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 68899999999987 22456778888777766553
No 17
>KOG4340|consensus
Probab=33.31 E-value=87 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=34.3
Q ss_pred cchHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcCCccccCCCCC
Q psy10296 70 WTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRVSGCETAPEG 115 (116)
Q Consensus 70 WtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~~~g~~f~tPE~~ 115 (116)
=+|+.|.+|-.-.+.|..+.|++.++-|.+|-.+ +.||-|
T Consensus 177 qpllAYniALaHy~~~qyasALk~iSEIieRG~r------~HPElg 216 (459)
T KOG4340|consen 177 QPLLAYNLALAHYSSRQYASALKHISEIIERGIR------QHPELG 216 (459)
T ss_pred CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhh------cCCccC
Confidence 4799999999999999999999999999988655 456654
No 18
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=33.29 E-value=70 Score=15.99 Aligned_cols=27 Identities=26% Similarity=0.193 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10296 73 VTYLLSAAMLYEGNVDEAWTTAGGLYR 99 (116)
Q Consensus 73 v~Y~lAa~mi~~G~~eeg~~i~~~~~~ 99 (116)
+-|.++..+...|..++|.+..+....
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 347788999999999999888776654
No 19
>PF07345 DUF1476: Domain of unknown function (DUF1476); InterPro: IPR009945 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family are found in Bradyrhizobium, Rhizobium, Brucella and Caulobacter species. The function of this family is unknown.; PDB: 2KZC_A 2LL0_A.
Probab=32.81 E-value=29 Score=24.27 Aligned_cols=15 Identities=20% Similarity=0.344 Sum_probs=12.1
Q ss_pred hhhHHHHHHHhcCCC
Q psy10296 3 DQLCGYLFLKASGVN 17 (116)
Q Consensus 3 DQL~Gqw~a~~~GL~ 17 (116)
+.|+|+|-|.++||.
T Consensus 30 nkllg~WAAe~lGl~ 44 (103)
T PF07345_consen 30 NKLLGLWAAELLGLT 44 (103)
T ss_dssp HHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCC
Confidence 579999999999997
No 20
>PF07221 GlcNAc_2-epim: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); InterPro: IPR010819 N-acylglucosamine 2-epimerase (AGE, 5.3.1.8 from EC) reversibly converts N-acyl-D-glucosamine to N-acyl-D-mannosamine, the latter ultimately being converted to cytidine 5'- monophospho-N-acetylneuraminic acid, which is used as a precursor for the synthesis of connective tissues, blood cells and cellular macromolecules. AGE is a renin-binding protein (RnBP), which might act as a cellular rennin inhibitor. AGE functions as a homodimer, where monomer has an alpha(6)/alpha(6)-barrel structure commonly found in glucoamylases and cellulases []. This family contains a number of eukaryotic and bacterial AGE enzymes.; GO: 0004476 mannose-6-phosphate isomerase activity, 0006013 mannose metabolic process; PDB: 1FP3_B 2RGK_B 3GT5_A 2GZ6_B 2ZBL_E 2AFA_A.
Probab=32.79 E-value=60 Score=25.84 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=32.6
Q ss_pred cccCCCCCCCccCCCCCCCccc--chHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Q psy10296 49 AVNGMKPNGDRDRSAIQSEEVW--TGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 49 a~Ng~~p~G~~~~~~~qs~EvW--tGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~ 103 (116)
-..+...+|+|+.+ ....+| .+..|..|.... .| .++.+++|+..++-+-+
T Consensus 2 f~~~ld~~g~~~~~--~~k~~~~q~R~~~~fa~a~~-~g-~~~~l~~A~~~~~fl~~ 54 (346)
T PF07221_consen 2 FFECLDRDGKPDDS--DKKRLWVQARQLYTFARAYR-LG-RPEYLELAEHGFDFLRK 54 (346)
T ss_dssp BE-EBBTTS-BECG--GEEEHHHHHHHHHHHHHHHH-TT-SHHHHHHHHHHHHHHHH
T ss_pred ceeeeCCCCCCCCC--CCceeeeeHHHHHHHHHHHh-cC-chhHHHHHHHHHHHHHH
Confidence 34456677888743 223444 466677665555 67 66689999999988776
No 21
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.62 E-value=60 Score=21.52 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 72 GVTYLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
-.-|.+|...+..|..++|++..-.+..+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 35799999999999999999987777655
No 22
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=30.78 E-value=85 Score=16.21 Aligned_cols=28 Identities=18% Similarity=0.056 Sum_probs=21.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHhH
Q psy10296 75 YLLSAAMLYEGNVDEAWTTAGGLYRRLR 102 (116)
Q Consensus 75 Y~lAa~mi~~G~~eeg~~i~~~~~~~~~ 102 (116)
..+|......|..+||.++.+.+.+..-
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~~~ 33 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEIRE 33 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHH
Confidence 4578888899999999999988876643
No 23
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=30.34 E-value=82 Score=18.31 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=14.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q psy10296 75 YLLSAAMLYEGNVDEAWTTAGGLY 98 (116)
Q Consensus 75 Y~lAa~mi~~G~~eeg~~i~~~~~ 98 (116)
|..|-..+..|..++|.++.+.+-
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l 24 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQAL 24 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666677777776666555443
No 24
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=29.75 E-value=1e+02 Score=17.44 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=19.8
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHH
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFS 36 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~ 36 (116)
-.++|++ +-.+.+.|+++-+...+
T Consensus 3 y~vLgl~--~~~~~~~ik~~y~~l~~ 26 (55)
T cd06257 3 YDILGVP--PDASDEEIKKAYRKLAL 26 (55)
T ss_pred HHHcCCC--CCCCHHHHHHHHHHHHH
Confidence 4688998 78899999998887766
No 25
>PF01204 Trehalase: Trehalase; InterPro: IPR001661 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 37 GH37 from CAZY comprises enzymes with only one known activity; trehalase (3.2.1.28 from EC). Trehalase is the enzyme responsible for the degradation of the disaccharide alpha,alpha-trehalose yielding two glucose subunits []. It is an enzyme found in a wide variety of organisms and whose sequence has been highly conserved throughout evolution.; GO: 0004555 alpha,alpha-trehalase activity, 0005991 trehalose metabolic process; PDB: 2JJB_B 2WYN_B 2JG0_A 2JF4_A 3C67_A 3D3I_B 3C69_A 3C68_A 2Z07_B.
Probab=29.45 E-value=3.8e+02 Score=23.28 Aligned_cols=75 Identities=16% Similarity=0.162 Sum_probs=46.9
Q ss_pred CCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccC---CCCCCC--cccchHHHHHHHHHHHcCChHHHHHHHH
Q psy10296 21 IFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDR---SAIQSE--EVWTGVTYLLSAAMLYEGNVDEAWTTAG 95 (116)
Q Consensus 21 v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~---~~~qs~--EvWtGv~Y~lAa~mi~~G~~eeg~~i~~ 95 (116)
+.++++..+....+.++ ++++. .... |.|.+.+ +.-|=+ -+|+=++|-+.-.|..-|..+.|.+|++
T Consensus 385 ~a~~~qa~~~~~~~l~~-~~~~~-----~l~~--~~g~~ts~~~~~~qWD~Pn~WaPlq~~~i~GL~~yG~~~lA~~la~ 456 (512)
T PF01204_consen 385 IASPEQAERLVARALDY-LERSG-----LLTF--PGGIPTSLYDTGQQWDGPNVWAPLQWMAIEGLRRYGYRELARRLAQ 456 (512)
T ss_dssp -S-HHHHHHHHHHHHHH-CTTCC-----SSC---CSECTTCTTTTTSTTSTTEEEHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcCHhhhhhHHHHHHHH-HHhcC-----Cccc--CCCCCCccccccccCCCCCccHhHHHHHHHHHHhCCcHHHHHHHHH
Confidence 56777766666665553 33321 1110 2232221 222333 4799999999999999999999999999
Q ss_pred HHHHHhHh
Q psy10296 96 GLYRRLRE 103 (116)
Q Consensus 96 ~~~~~~~~ 103 (116)
...+.++.
T Consensus 457 rwl~~~~~ 464 (512)
T PF01204_consen 457 RWLRLNYK 464 (512)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98888776
No 26
>KOG3800|consensus
Probab=29.29 E-value=45 Score=27.56 Aligned_cols=25 Identities=8% Similarity=-0.114 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhHhcCCccccCCCCCC
Q psy10296 90 AWTTAGGLYRRLREDRVSGCETAPEGV 116 (116)
Q Consensus 90 g~~i~~~~~~~~~~~~g~~f~tPE~~~ 116 (116)
+-.+++.|+++|+. .| +.+-|||++
T Consensus 24 ~H~lCEsCvd~iF~-~g-~~~CpeC~~ 48 (300)
T KOG3800|consen 24 GHRLCESCVDRIFS-LG-PAQCPECMV 48 (300)
T ss_pred cchHHHHHHHHHHh-cC-CCCCCcccc
Confidence 34678999999999 67 899999985
No 27
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=29.28 E-value=1.1e+02 Score=17.75 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10296 72 GVTYLLSAAMLYEGNVDEAWTTAGGLYR 99 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~~eeg~~i~~~~~~ 99 (116)
-+.|.+|-..+..|..++|.++.+.+-.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3567899999999999999888765543
No 28
>PRK10137 alpha-glucosidase; Provisional
Probab=28.28 E-value=3.7e+02 Score=25.13 Aligned_cols=34 Identities=26% Similarity=0.379 Sum_probs=31.7
Q ss_pred cccchHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Q psy10296 68 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRL 101 (116)
Q Consensus 68 EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~ 101 (116)
-||+=++|-++..|...|..++|.+|++...+++
T Consensus 710 pVWpp~N~Li~~GL~rYG~~e~A~~La~~ll~~a 743 (786)
T PRK10137 710 RVWVDQFYFGLKGMERYGYRDDALKLADTFFRHA 743 (786)
T ss_pred CcCHhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999854
No 29
>PF08708 PriCT_1: Primase C terminal 1 (PriCT-1); InterPro: IPR014820 This alpha helical domain is found at the C-terminal of primases.
Probab=28.22 E-value=73 Score=19.70 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=17.6
Q ss_pred CCCChhHHHHHHHHHHHhhc
Q psy10296 20 AIFPSANIARALATIFSTNV 39 (116)
Q Consensus 20 ~v~~~~~v~sAL~sI~~~N~ 39 (116)
+-+|.+-|++..+||+++..
T Consensus 51 ~PL~~~Ev~~i~kSi~k~~~ 70 (71)
T PF08708_consen 51 PPLPESEVKAIAKSIAKWTW 70 (71)
T ss_pred CCCCHHHHHHHHHHHHHhcc
Confidence 78999999999999998753
No 30
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=28.20 E-value=74 Score=23.73 Aligned_cols=28 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy10296 10 FLKASGVNTEAIFPSANIARALATIFSTNV 39 (116)
Q Consensus 10 ~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~ 39 (116)
|=..||.| -++.+|.|+.+...+.+-|=
T Consensus 107 Fe~~cGVG--V~VT~E~I~~~V~~~i~~~k 134 (164)
T PF04558_consen 107 FEKACGVG--VVVTPEQIEAAVEKYIEENK 134 (164)
T ss_dssp HHHTTTTT------HHHHHHHHHHHHHHTH
T ss_pred HHHHcCCC--eEECHHHHHHHHHHHHHHhH
Confidence 55789999 89999999999999999884
No 31
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=27.93 E-value=2.1e+02 Score=19.89 Aligned_cols=64 Identities=14% Similarity=0.145 Sum_probs=47.0
Q ss_pred CChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHcCChHHHHHHHH
Q psy10296 22 FPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAG 95 (116)
Q Consensus 22 ~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~G~~eeg~~i~~ 95 (116)
..+-|++.-|++.-+..+..+..+ .|+=..+.+...-...-+-+..|..++.+|..++|++++.
T Consensus 31 cS~Rn~r~lLkkm~~~gWi~W~pg----------~GRG~~S~L~~l~~~~~~~~~~~~~~l~~g~~~~a~~ll~ 94 (115)
T PF12793_consen 31 CSRRNARTLLKKMQEEGWITWQPG----------RGRGNRSQLTFLKSPEELLEQQAEELLEQGKYEQALQLLD 94 (115)
T ss_pred CCHHHHHHHHHHHHHCCCeeeeCC----------CCCCCCCeeEEeeCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 457788889999888887775432 2333333344444446688999999999999999999998
No 32
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=27.65 E-value=78 Score=20.78 Aligned_cols=29 Identities=17% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHcCChHHHHHHHHHHHHHhHhcCCccc
Q psy10296 80 AMLYEGNVDEAWTTAGGLYRRLREDRVSGC 109 (116)
Q Consensus 80 ~mi~~G~~eeg~~i~~~~~~~~~~~~g~~f 109 (116)
.|--.|+..+....++..|+.+|. .++.+
T Consensus 22 GLrR~Gfs~~~i~~l~~ayr~l~~-~~~~~ 50 (83)
T PF13720_consen 22 GLRRRGFSKEEISALRRAYRILFR-SGLTL 50 (83)
T ss_dssp HHHHTTS-HHHHHHHHHHHHHHHT-SSS-H
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHh-CCCCH
Confidence 466789999999999999999998 45544
No 33
>PF05777 Acp26Ab: Drosophila accessory gland-specific peptide 26Ab (Acp26Ab); InterPro: IPR008392 This family consists of accessory gland-specific 26Ab peptides or male accessory gland secretory protein 355B from different Drosophila species. Drosophila males, like males of most other insects, transfer a group of specific proteins (Acp26Ab and Acp26Aa in Drosophila) to the females during mating. These proteins are produced primarily in the accessory gland and are likely to influence the female's reproduction [].; GO: 0007617 mating behavior, 0005576 extracellular region
Probab=27.65 E-value=36 Score=23.19 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhccccCC
Q psy10296 26 NIARALATIFSTNVRGFEA 44 (116)
Q Consensus 26 ~v~sAL~sI~~~N~~~~~~ 44 (116)
-+---||++|+||+....+
T Consensus 38 ~i~G~LRTlydy~VqD~vn 56 (90)
T PF05777_consen 38 MINGMLRTLYDYNVQDNVN 56 (90)
T ss_pred HHhhhHhHHhhcccccccc
Confidence 3445799999999997443
No 34
>TIGR00106 uncharacterized protein, MTH1187 family. This protein has been crystallized in both Methanobacterium thermoautotrophicum and yeast, but its function remains unknown. Both crystal structures showed sulfate ions bound at the interface of two dimers to form a tetramer.
Probab=27.28 E-value=84 Score=21.34 Aligned_cols=23 Identities=22% Similarity=0.382 Sum_probs=19.9
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
.||..++-|++++.+++.+.+ .|
T Consensus 44 IEGe~dev~~~i~~~~e~~~~-~G 66 (97)
T TIGR00106 44 IEGDLDELFEAIKAIHEAVLE-KG 66 (97)
T ss_pred EecCHHHHHHHHHHHHHHHHH-cC
Confidence 378899999999999999988 45
No 35
>COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases [General function prediction only]
Probab=27.02 E-value=2e+02 Score=24.32 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=53.4
Q ss_pred hhHHHHH-HHhcCCCCCCCCChhHHHHHHHHHHHhhccccCC-------CccccccCCCCCC-----CccCCCCCCCccc
Q psy10296 4 QLCGYLF-LKASGVNTEAIFPSANIARALATIFSTNVRGFEA-------GSMGAVNGMKPNG-----DRDRSAIQSEEVW 70 (116)
Q Consensus 4 QL~Gqw~-a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~-------g~~Ga~Ng~~p~G-----~~~~~~~qs~EvW 70 (116)
+|+.+|| .+.+|.+ +-+ .-+.++++|++-=+-+-.. -.+=..|.||-.+ +|- -+..+...
T Consensus 161 sLf~dWylpr~~g~~---l~~--~~r~~~~aiwd~Lid~~~~~~~vlvhRDfh~~NLmw~~~~~g~~rvG--vlDFQDA~ 233 (351)
T COG3178 161 SLFVDWYLPRHLGRP---LTD--AERQAWEAIWDGLIDSLLAQPKVLVHRDFHSRNLMWTADRAGADRVG--VLDFQDAL 233 (351)
T ss_pred HhhHHhhhHHHhCCC---CCH--HHHHHHHHHHHHHHHHHhcCCceeeeccccCccceecCCccCCCCCc--eeehhhhh
Confidence 6899999 8899986 443 3456777777754333211 1223568887433 222 23333444
Q ss_pred c-hHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Q psy10296 71 T-GVTYLLSAAMLYEGNVDEAWTTAGGLYRRLRED 104 (116)
Q Consensus 71 t-Gv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~~ 104 (116)
. =+.|=|||.....-..-+ -+...++-++-+++
T Consensus 234 iGP~aYDvasL~~DArvt~~-pe~~~~~l~rY~~~ 267 (351)
T COG3178 234 IGPIAYDVASLLRDARVTWS-PERELALLDRYWAA 267 (351)
T ss_pred cCcchhhHHHHHhhccccCC-HHHHHHHHHHHHHh
Confidence 4 488999998875544322 44555555554443
No 36
>PLN03005 beta-fructofuranosidase
Probab=26.78 E-value=4.7e+02 Score=23.52 Aligned_cols=89 Identities=18% Similarity=0.165 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCC----------C-CccCCCCCC---Ccccc
Q psy10296 6 CGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPN----------G-DRDRSAIQS---EEVWT 71 (116)
Q Consensus 6 ~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~----------G-~~~~~~~qs---~EvWt 71 (116)
+|--+|-++||. ++++.++-++.|.+ |+..-. +.|-..-+. |- | .|. ..+.+ --.|+
T Consensus 382 lGNllAILs~La-----t~~Qs~aIm~lIe~-~w~~Lv-~~MPlkIcy-Pa~e~~eWri~tG~dpK-N~PWSYHNGGsWP 452 (550)
T PLN03005 382 LGNCVSILSSLA-----TPDQSMAIMDLLEH-RWEELV-GEMPLKICY-PCLEGHEWRIVTGCDPK-NTRWSYHNGGSWP 452 (550)
T ss_pred hhhHHHHHhccC-----CHHHHHHHHHHHHH-HHHHHh-ccCCcceee-cccCCccceecccCCCC-CCCccccCCCcch
Confidence 566677777664 78888887877771 222110 111111111 20 2 222 22333 28999
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Q psy10296 72 GVTYLLSAAMLYEGNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~ 103 (116)
=+-..+.+.+|..|..+.|.+..+.+-+++..
T Consensus 453 ~Llw~~~aA~iK~gr~~lA~ral~~ae~rl~~ 484 (550)
T PLN03005 453 VLLWQLTAACIKTGRPQIARRAVDLIESRLHR 484 (550)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999888888877
No 37
>cd00249 AGE AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
Probab=25.88 E-value=3.4e+02 Score=21.52 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=34.3
Q ss_pred ccccCCCCCCCccCCCCCCCccc--chHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Q psy10296 48 GAVNGMKPNGDRDRSAIQSEEVW--TGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 48 Ga~Ng~~p~G~~~~~~~qs~EvW--tGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~ 103 (116)
|...+..++|+|..+ ...+| ....|++|.....-|. ++.++.|+.+++-+.+
T Consensus 34 g~~~~l~~~g~~~~~---~k~~~~~ar~i~~~a~a~~~~~~-~~~l~~A~~~~~fl~~ 87 (384)
T cd00249 34 GFFECLDRDGQPFDT---DRRLWLQARQVYCFAVAYLLGWR-PEWLEAAEHGLEYLDR 87 (384)
T ss_pred CeEEEECCCCCCCCC---CCeEEEecHHHHHHHHHHHhcCC-hhHHHHHHHHHHHHHH
Confidence 566677789988743 23355 6888888876666554 4456677766666555
No 38
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=25.60 E-value=50 Score=25.16 Aligned_cols=22 Identities=18% Similarity=-0.000 Sum_probs=18.8
Q ss_pred ChHHHHHHHHHHHHHhHhcCCcc
Q psy10296 86 NVDEAWTTAGGLYRRLREDRVSG 108 (116)
Q Consensus 86 ~~eeg~~i~~~~~~~~~~~~g~~ 108 (116)
|+|| .++|+-+|-.+|++.+++
T Consensus 57 MrEE-EKLARDVYL~LYnkw~l~ 78 (189)
T COG4902 57 MREE-EKLARDVYLYLYNKWNLP 78 (189)
T ss_pred HHHH-HHHHhhHHhhhhhccCcH
Confidence 4566 899999999999988776
No 39
>TIGR03505 FimV_core FimV N-terminal domain. This region is found at, or about 200 amino acids from, the N-terminus of FimV from Pseudomonas aeruginosa, TspA of Neisseria meningitidis, and related proteins. Disruption of FimV blocks twitching motility from type IV pili; Semmler, et al. suggest a role for this family in peptidoglycan layer remodelling required by type IV fimbrial systems. Most but not all members of this protein family have a C-terminal region recognized by TIGR03504. In between is a highly variable, often repeat-filled region rich in the negatively charged amino acids Asp and Glu.
Probab=25.16 E-value=73 Score=20.71 Aligned_cols=34 Identities=15% Similarity=0.269 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhhccccCCCccccccCCCCCCCccCC
Q psy10296 26 NIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRS 62 (116)
Q Consensus 26 ~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~ 62 (116)
-+..++..||+.|=..|.++ =+|.+++.-.+..|
T Consensus 17 s~~q~m~ai~~aNp~AF~~~---nin~L~~G~~L~iP 50 (74)
T TIGR03505 17 SLYQMMLALYRANPDAFIGG---NINRLKVGQILRIP 50 (74)
T ss_pred CHHHHHHHHHHHCHHhHhcC---ChhhcCCCCEEeCC
Confidence 36778899999999998765 45888875554433
No 40
>PF10942 DUF2619: Protein of unknown function (DUF2619); InterPro: IPR020390 This entry contains membrane proteins with no known function.
Probab=25.02 E-value=1e+02 Score=20.17 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy10296 73 VTYLLSAAMLYEGNVDEAWTTA 94 (116)
Q Consensus 73 v~Y~lAa~mi~~G~~eeg~~i~ 94 (116)
+|...|-.|+.-+..|+|+++=
T Consensus 7 iE~~AAllml~~n~vekAl~iN 28 (69)
T PF10942_consen 7 IELTAALLMLKFNDVEKALKIN 28 (69)
T ss_pred HHHHHHHHHHHHccHHHHHHHH
Confidence 6888999999999999999874
No 41
>COG5443 FlbT Flagellar biosynthesis regulator FlbT [Cell motility and secretion]
Probab=24.99 E-value=76 Score=23.55 Aligned_cols=37 Identities=24% Similarity=0.195 Sum_probs=29.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHHhHhcCC---ccccCCCCC
Q psy10296 79 AAMLYEGNVDEAWTTAGGLYRRLREDRV---SGCETAPEG 115 (116)
Q Consensus 79 a~mi~~G~~eeg~~i~~~~~~~~~~~~g---~~f~tPE~~ 115 (116)
..|..+|..=||++.+++.|..=-++.| ..+-+||.|
T Consensus 102 d~lV~~~~~feALkaiR~lyp~E~e~lg~q~~v~~~v~~g 141 (148)
T COG5443 102 DGLVMAGRAFEALKAIRGLYPIEDEILGAQEHVPATVEQG 141 (148)
T ss_pred HHHHhccHHHHHHHHHhhhchhHHHHcCCCCCCCcccchh
Confidence 3466788889999999999988777778 778888875
No 42
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=24.60 E-value=79 Score=20.39 Aligned_cols=28 Identities=21% Similarity=0.229 Sum_probs=18.0
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhcccc
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVRGF 42 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~ 42 (116)
++.+|++ +-.... ...|+++|+-++..|
T Consensus 64 a~~lg~~--~~~~~~--~~~L~~~Y~~~L~~f 91 (92)
T PF01388_consen 64 ARKLGFP--PSSTSA--AQQLRQHYEKYLLPF 91 (92)
T ss_dssp HHHTTS---TTSCHH--HHHHHHHHHHHTHHH
T ss_pred HHHhCCC--CCCCcH--HHHHHHHHHHHhHhh
Confidence 5566776 322222 789999999887665
No 43
>PF04422 FrhB_FdhB_N: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; InterPro: IPR007516 Coenzyme F420 hydrogenase (1.12.99.1 from EC) reduces the low-potential two-electron acceptor coenzyme F420. This entry contains the N termini of F420 hydrogenase and dehydrogenase beta subunits [, ]. The N terminus of Methanobacterium formicicum formate dehydrogenase beta chain (1.2.1.2 from EC, P06130 from SWISSPROT) is also represented in this entry []. This region is often found in association with the 4Fe-4S binding domain, fer4 (IPR001450 from INTERPRO), and the C terminus IPR007525 from INTERPRO.
Probab=24.40 E-value=61 Score=21.06 Aligned_cols=29 Identities=31% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCCCcccchHHHHHHHHHHHcCChHHHHH
Q psy10296 64 IQSEEVWTGVTYLLSAAMLYEGNVDEAWT 92 (116)
Q Consensus 64 ~qs~EvWtGv~Y~lAa~mi~~G~~eeg~~ 92 (116)
+.....+-|+.-+++.+++.+|++|-++.
T Consensus 13 ir~~~~sGG~vTaLl~~lLe~g~Vd~vv~ 41 (82)
T PF04422_consen 13 IREKSQSGGVVTALLAYLLESGLVDGVVV 41 (82)
T ss_pred hcccCCcHHHHHHHHHHHHHcCCceEEEE
Confidence 34567789999999999999999875443
No 44
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=23.99 E-value=66 Score=21.60 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=19.8
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
.||..++-|++++.+.+.+++ .|
T Consensus 42 iEGe~dev~~~i~~~~e~~~~-~G 64 (92)
T PF01910_consen 42 IEGELDEVMALIKEAHEALFE-AG 64 (92)
T ss_dssp EEEEHHHHHHHHHHHHHHHHC-TT
T ss_pred EEecHHHHHHHHHHHHHHHHH-cC
Confidence 368889999999999999988 45
No 45
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=23.00 E-value=1.7e+02 Score=17.08 Aligned_cols=26 Identities=15% Similarity=0.150 Sum_probs=22.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10296 74 TYLLSAAMLYEGNVDEAWTTAGGLYR 99 (116)
Q Consensus 74 ~Y~lAa~mi~~G~~eeg~~i~~~~~~ 99 (116)
.|-+|...|..|..+.|.++.+.+-.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999998887763
No 46
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=22.45 E-value=1.6e+02 Score=16.89 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=19.8
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHH
Q psy10296 10 FLKASGVNTEAIFPSANIARALATIFS 36 (116)
Q Consensus 10 ~a~~~GL~~~~v~~~~~v~sAL~sI~~ 36 (116)
|-.++|++ +-.+.+.|+++-+..-+
T Consensus 3 ~y~vLgl~--~~~~~~~ik~ay~~l~~ 27 (60)
T smart00271 3 YYEILGVP--RDASLDEIKKAYRKLAL 27 (60)
T ss_pred HHHHcCCC--CCCCHHHHHHHHHHHHH
Confidence 34688998 66899999988887765
No 47
>PF13308 YARHG: YARHG domain
Probab=22.26 E-value=42 Score=21.92 Aligned_cols=27 Identities=7% Similarity=-0.097 Sum_probs=18.1
Q ss_pred cCChHHHHHHHHHHHHHhHhcCCccccCCC
Q psy10296 84 EGNVDEAWTTAGGLYRRLREDRVSGCETAP 113 (116)
Q Consensus 84 ~G~~eeg~~i~~~~~~~~~~~~g~~f~tPE 113 (116)
.++..+-+.++ ++.+|-|.|..|++|+
T Consensus 19 ~~ls~~~L~~~---RNeiyAr~Gy~F~~~~ 45 (81)
T PF13308_consen 19 SNLSCEELRIA---RNEIYARHGYCFKSQD 45 (81)
T ss_pred HcCCHHHHHHH---HHHHHHHcCCCCCCHH
Confidence 34444445554 5667888999999875
No 48
>PLN02973 beta-fructofuranosidase
Probab=22.23 E-value=5.9e+02 Score=23.04 Aligned_cols=90 Identities=20% Similarity=0.175 Sum_probs=57.7
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCC---------CC-CccCCCCCC---Ccccch
Q psy10296 6 CGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKP---------NG-DRDRSAIQS---EEVWTG 72 (116)
Q Consensus 6 ~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p---------~G-~~~~~~~qs---~EvWtG 72 (116)
+|--+|-++||. ++++.++-++.|.+ |+..-. +.|-.-.+.-| .| .|. ..+.+ --.|+=
T Consensus 403 lGNllAILs~La-----t~~Qs~aIm~lIe~-~w~~Lv-g~MPlkicyPaie~~EWri~tG~dpK-N~PWSYHNGGsWP~ 474 (571)
T PLN02973 403 LGNCIAILSSLA-----TPEQSTAIMDLIES-RWEELV-GEMPLKVCYPAIESHEWRIVTGCDPK-NTRWSYHNGGSWPV 474 (571)
T ss_pred hhhHHHHHhccC-----CHHHHHHHHHHHHH-HHHHHH-hcCCcceeccCcCCccceehhccCCC-CCccceecCCCccH
Confidence 566677777664 78888888887776 111100 11111111111 02 122 22333 289999
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Q psy10296 73 VTYLLSAAMLYEGNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 73 v~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~ 103 (116)
+-..+.+.+|..|..+.|.+..+.+-+++..
T Consensus 475 Llw~~~aA~iK~gr~~lA~ral~~ae~rl~~ 505 (571)
T PLN02973 475 LLWLLTAACIKTGRPQIARRAIEVAEARLHK 505 (571)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999998888888876
No 49
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=22.05 E-value=2e+02 Score=17.61 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=21.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhHh
Q psy10296 76 LLSAAMLYEGNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 76 ~lAa~mi~~G~~eeg~~i~~~~~~~~~~ 103 (116)
++-..+++.|..|+|.+-++.+.+.+-.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~~~~~ 55 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSKDLQQ 55 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999988877543
No 50
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=21.87 E-value=62 Score=26.29 Aligned_cols=29 Identities=14% Similarity=0.012 Sum_probs=24.5
Q ss_pred HHHcCChHHHHHHHHHHHHHhHhcCCcccc
Q psy10296 81 MLYEGNVDEAWTTAGGLYRRLREDRVSGCE 110 (116)
Q Consensus 81 mi~~G~~eeg~~i~~~~~~~~~~~~g~~f~ 110 (116)
|-..|+..|.+...+..|+.+|+ .+..|+
T Consensus 200 lkRrgf~~e~i~alr~ayk~lfr-~~~~~~ 228 (260)
T COG1043 200 LKRRGFSREEIHALRKAYKLLFR-SGLTLR 228 (260)
T ss_pred eeccCCCHHHHHHHHHHHHHHee-CCCCHH
Confidence 44678889999999999999999 577775
No 51
>KOG0097|consensus
Probab=21.45 E-value=1.1e+02 Score=23.36 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHhHhcCCccccCCCCCC
Q psy10296 87 VDEAWTTAGGLYRRLREDRVSGCETAPEGV 116 (116)
Q Consensus 87 ~eeg~~i~~~~~~~~~~~~g~~f~tPE~~~ 116 (116)
.+--+++++.+|.+|-+ ..|-.+..|+||
T Consensus 162 edafle~akkiyqniqd-gsldlnaaesgv 190 (215)
T KOG0097|consen 162 EDAFLETAKKIYQNIQD-GSLDLNAAESGV 190 (215)
T ss_pred HHHHHHHHHHHHHhhhc-CcccccchhccC
Confidence 44567999999999987 788888888886
No 52
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=21.12 E-value=1.3e+02 Score=15.05 Aligned_cols=25 Identities=20% Similarity=0.125 Sum_probs=20.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Q psy10296 75 YLLSAAMLYEGNVDEAWTTAGGLYR 99 (116)
Q Consensus 75 Y~lAa~mi~~G~~eeg~~i~~~~~~ 99 (116)
|.++-.....|..++|++..+.+.+
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6678888899999999988777654
No 53
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=20.97 E-value=2.4e+02 Score=22.80 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHcCC-hHHHHHHHHHHHHHhHhcCC
Q psy10296 72 GVTYLLSAAMLYEGN-VDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 72 Gv~Y~lAa~mi~~G~-~eeg~~i~~~~~~~~~~~~g 106 (116)
-+.|.+|++|..++. .++.++-+-.+|+.+-+ .|
T Consensus 58 ~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~-~g 92 (297)
T PF13170_consen 58 NHRFILAALLDISFEDPEEAFKEVLDIYEKLKE-AG 92 (297)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH-hc
Confidence 368999999999999 99999999999999888 55
No 54
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=20.67 E-value=1.1e+02 Score=21.06 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 73 VTYLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 73 v~Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
..+.+|..++.+|..++|+++.+.+-+.
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~ 114 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQIPDE 114 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhccCc
Confidence 5677999999999999999998775443
No 55
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=20.49 E-value=77 Score=20.90 Aligned_cols=25 Identities=12% Similarity=0.268 Sum_probs=17.6
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHh
Q psy10296 6 CGYLFLKASGVNTEAIFPSANIARALATIFST 37 (116)
Q Consensus 6 ~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~ 37 (116)
+|||+.+ .-+.+.-..+-||+.|+.
T Consensus 41 lgqwh~r-------grvskavlvkmlrkly~~ 65 (79)
T PF09061_consen 41 LGQWHTR-------GRVSKAVLVKMLRKLYEA 65 (79)
T ss_dssp -TTHHHH-------S-EEHHHHHHHHHHHHHH
T ss_pred hhhhhhc-------CcchHHHHHHHHHHHHHh
Confidence 6888876 245667777888998885
No 56
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=20.36 E-value=2.7e+02 Score=20.66 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=33.7
Q ss_pred cccchHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 68 EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 68 EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
..|+-+.|+=|..|---|..+||++--+..-+.|-+|+|
T Consensus 97 klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 97 KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 689999999999999999999999999999999888876
No 57
>PRK02999 malate synthase G; Provisional
Probab=20.35 E-value=4.5e+02 Score=24.50 Aligned_cols=65 Identities=8% Similarity=0.164 Sum_probs=43.2
Q ss_pred hhhhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHHH
Q psy10296 2 ADQLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAM 81 (116)
Q Consensus 2 aDQL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~m 81 (116)
|.|-+-||.-+ + ++.+++|+.+|+..-.. .- .-|.-.|.=+|-.+ ..=.++-|+.|+-+
T Consensus 639 SrqqiwnWL~H----G---~~~~~qv~~~l~rma~v--vd-------~qNa~dp~y~pma~-----~~~~~~afqAA~dL 697 (726)
T PRK02999 639 SSQHIANWLRH----G---VVTEEQVMESLKRMAAV--VD-------QQNAGDPAYRPMAP-----DFDNSIAFQAACDL 697 (726)
T ss_pred HHHHHHHHHHc----c---CCCHHHHHHHHHHHHHH--Hh-------hccCCCcccccCCC-----CCccCHHHHHHHHH
Confidence 56788888776 3 66799999999987663 11 12433443333321 11247999999999
Q ss_pred HHcCCh
Q psy10296 82 LYEGNV 87 (116)
Q Consensus 82 i~~G~~ 87 (116)
|.+|..
T Consensus 698 vf~G~~ 703 (726)
T PRK02999 698 VFKGRE 703 (726)
T ss_pred HhcCCc
Confidence 999873
No 58
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=20.16 E-value=1.6e+02 Score=23.59 Aligned_cols=41 Identities=17% Similarity=-0.040 Sum_probs=35.1
Q ss_pred CCCCCCcccchHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Q psy10296 62 SAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLR 102 (116)
Q Consensus 62 ~~~qs~EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~~~ 102 (116)
+.++.++.-.-|-.-++.++.+.|-.|.|+.+.+++-+-.+
T Consensus 145 ~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 145 DLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred chhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 45677788899999999999999999999999998877544
No 59
>PF01877 RNA_binding: RNA binding; InterPro: IPR002739 The proteins in this entry are functionally uncharacterised.; PDB: 2WNY_B 2NWU_A 2NRQ_A 2OGK_A 3D7A_B 3C9G_B 2PZZ_D.
Probab=20.04 E-value=59 Score=22.77 Aligned_cols=13 Identities=23% Similarity=0.603 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHH
Q psy10296 23 PSANIARALATIF 35 (116)
Q Consensus 23 ~~~~v~sAL~sI~ 35 (116)
|++||++||..+|
T Consensus 14 D~eKV~~Al~nlf 26 (120)
T PF01877_consen 14 DEEKVKKALSNLF 26 (120)
T ss_dssp -HHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHh
Confidence 7899999999999
Done!