Query psy10296
Match_columns 116
No_of_seqs 100 out of 178
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 22:49:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c68_A Uncharacterized protein 94.1 0.2 7E-06 43.9 8.6 85 6-100 630-716 (761)
2 2gz6_A N-acetyl-D-glucosamine 75.3 16 0.00054 28.1 8.3 75 25-103 261-338 (388)
3 3qde_A Cellobiose phosphorylas 70.4 31 0.001 30.3 9.7 85 5-100 585-681 (811)
4 3gt5_A N-acetylglucosamine 2-e 68.9 5.4 0.00018 31.5 4.3 77 23-103 265-344 (402)
5 2jg0_A Periplasmic trehalase; 56.8 36 0.0012 28.3 7.3 72 21-103 383-456 (535)
6 1v7w_A Chitobiose phosphorylas 55.6 56 0.0019 27.9 8.5 83 6-98 578-670 (807)
7 2z07_A Putative uncharacterize 54.6 74 0.0025 24.7 9.1 76 21-101 310-386 (420)
8 2guz_B Mitochondrial import in 54.5 11 0.00039 23.0 3.0 29 11-41 7-38 (65)
9 2qee_A BH0493 protein; amidohy 37.6 17 0.00058 30.2 2.3 40 4-45 377-416 (437)
10 3rrs_A Cellobiose phosphorylas 37.2 1.4E+02 0.0049 26.1 8.3 85 5-100 592-694 (822)
11 1irz_A ARR10-B; helix-turn-hel 36.6 33 0.0011 21.1 3.0 20 21-41 43-62 (64)
12 1fp3_A N-acyl-D-glucosamine 2- 34.8 1.5E+02 0.0052 22.6 7.6 64 48-111 291-361 (402)
13 3tl4_X Glutaminyl-tRNA synthet 31.1 49 0.0017 24.2 3.7 28 10-39 107-134 (187)
14 2ll0_A Uncharacterized protein 30.2 23 0.0008 23.9 1.7 15 3-17 30-44 (104)
15 3q4o_A Uncharacterized protein 27.4 25 0.00085 26.2 1.6 19 88-107 37-55 (196)
16 2g3q_A Protein YBL047C; endocy 27.2 44 0.0015 18.0 2.3 25 11-40 9-33 (43)
17 1yqh_A DUF77, IG hypothetical 25.5 50 0.0017 22.0 2.7 23 83-106 50-72 (109)
18 2kzc_A Uncharacterized protein 25.2 30 0.001 22.5 1.5 15 3-17 11-25 (85)
19 2okx_A Rhamnosidase B; alpha b 25.0 3.5E+02 0.012 23.7 9.3 70 5-103 764-833 (956)
20 1lxj_A YBL001C, hypothetical 1 24.5 45 0.0015 21.9 2.3 23 83-106 49-71 (104)
21 1whc_A RSGI RUH-027, UBA/UBX 3 23.6 28 0.00097 20.9 1.1 26 12-41 15-40 (64)
22 1rij_A E6APN1 peptide; Trp-CAG 22.2 32 0.0011 17.4 0.9 9 3-11 3-11 (26)
23 2ooa_A E3 ubiquitin-protein li 21.9 49 0.0017 19.7 1.8 20 10-33 15-34 (52)
24 3d7a_A UPF0201 protein PH1010; 21.8 34 0.0012 23.7 1.3 15 23-37 19-33 (138)
25 1lxn_A Hypothetical protein MT 21.7 67 0.0023 20.8 2.7 23 83-106 45-68 (99)
26 2pzz_A UPF0201 protein MJ1564; 21.3 34 0.0012 24.0 1.2 15 23-37 15-29 (147)
No 1
>3c68_A Uncharacterized protein YGJK; GH63, processing alpha-glucosidase, alpha/alpha barrel, hydrolase; HET: BMA; 1.50A {Escherichia coli} PDB: 3c67_A* 2ds3_A* 3c69_A* 3d3i_A
Probab=94.11 E-value=0.2 Score=43.86 Aligned_cols=85 Identities=15% Similarity=0.087 Sum_probs=56.8
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCC--CCCCccCCCCCCCcccchHHHHHHHHHHH
Q psy10296 6 CGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMK--PNGDRDRSAIQSEEVWTGVTYLLSAAMLY 83 (116)
Q Consensus 6 ~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~--p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~ 83 (116)
++++++.++|+ +|+++++++|++|.+.+... ...|..-... |.-.+. .-.--.+|++++|-++..|..
T Consensus 630 ~s~~~pL~~Gl-----~~~e~a~~vl~~L~~~~~l~---t~~Girtls~~~p~y~p~--~yw~GpvW~~~~~lli~aL~~ 699 (761)
T 3c68_A 630 PEGWSPLFNGA-----ATQANADAVVKVMLDPKEFN---TFVPLGTAALTNPAFGAD--IYWRGRVWVDQFWFGLKGMER 699 (761)
T ss_dssp GGGGHHHHTTC-----SCHHHHHHHHHHHTCTTTTC---CSSCSCSSCTTCTTCCTT--CTTTTCEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-----CCHHHHHHHHHHHhChhhhc---CCCCccccCCCCcccCCC--ccccCCcccchHHHHHHHHHH
Confidence 45677777765 47899999999997643211 2223321111 111111 111126999999999999999
Q ss_pred cCChHHHHHHHHHHHHH
Q psy10296 84 EGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 84 ~G~~eeg~~i~~~~~~~ 100 (116)
.|..++|.++++.+++.
T Consensus 700 ~G~~d~A~~l~~~~~~~ 716 (761)
T 3c68_A 700 YGYRDDALKLADTFFRH 716 (761)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 99999999999998875
No 2
>2gz6_A N-acetyl-D-glucosamine 2-epimerase; anabaena SP. CH1, isomer; 2.00A {Anabaena SP}
Probab=75.32 E-value=16 Score=28.05 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCC-CCCcccchHHHHHHHHHHHc--CChHHHHHHHHHHHHHh
Q psy10296 25 ANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAI-QSEEVWTGVTYLLSAAMLYE--GNVDEAWTTAGGLYRRL 101 (116)
Q Consensus 25 ~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~-qs~EvWtGv~Y~lAa~mi~~--G~~eeg~~i~~~~~~~~ 101 (116)
+..++.++.++++-+.+. .-|..+...++|.|..... .+.-.|+..+..+|..+.++ |. ++-++.++.+++-+
T Consensus 261 ~~A~~~~~~~~~~g~d~~---~Gg~~~~~~~~g~~~~~~~~~~~~~W~qae~i~a~~~ly~~tgd-~~yl~~a~~~~~~~ 336 (388)
T 2gz6_A 261 NQAVDVVLNILNFAWDNE---YGGLYYFMDAAGHPPQQLEWDQKLWWVHLESLVALAMGYRLTGR-DACWAWYQKMHDYS 336 (388)
T ss_dssp HHHHHHHHHHHHHHBCTT---TCSBCSCEETTSCCCSCTTTTCEEHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC---CCCEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Confidence 344445555555444432 2356677777887653111 23356888888888777653 55 33356666666655
Q ss_pred Hh
Q psy10296 102 RE 103 (116)
Q Consensus 102 ~~ 103 (116)
++
T Consensus 337 ~~ 338 (388)
T 2gz6_A 337 WQ 338 (388)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 3
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=70.35 E-value=31 Score=30.27 Aligned_cols=85 Identities=13% Similarity=0.090 Sum_probs=54.9
Q ss_pred hHHHHHHHhcCCCCCCCCChh-HHHHHHHHHHHhhccccCCCccccccCCCC-------C-CCccC--CCC-CCCcccch
Q psy10296 5 LCGYLFLKASGVNTEAIFPSA-NIARALATIFSTNVRGFEAGSMGAVNGMKP-------N-GDRDR--SAI-QSEEVWTG 72 (116)
Q Consensus 5 L~Gqw~a~~~GL~~~~v~~~~-~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p-------~-G~~~~--~~~-qs~EvWtG 72 (116)
+.+|.|+-+.|+ .+++ +++++|++|.+.-+.++ |.. .+.| + |.... +.. .-..+|+=
T Consensus 585 ~~~q~~avlsGi-----a~~e~ra~~~m~~v~~~L~t~~-----Glr-ll~p~f~~~~~d~g~~~~Y~pg~~enG~iy~H 653 (811)
T 3qde_A 585 IESQGFCVMAEI-----GLEDGKALKALDSVKKYLDTPY-----GLV-LQNPAFTRYYIEYGEISTYPPGYKENAGIFCH 653 (811)
T ss_dssp SHHHHHHHHTTC-----SSSSSHHHHHHHHHHHHHCCTT-----CCC-SEESCCCSCCTTTGGGGTSCTTSTTTTCEEHH
T ss_pred ecchhHHHHhCC-----CCchHHHHHHHHHHHHHhCCCc-----ceE-eecCCccccCCCCCceeccCCCccccccccch
Confidence 357888888755 4899 99999999999766653 221 1112 1 11111 111 11256666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 73 VTYLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 73 v~Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
-+-=++..+...|..++|+++.+.+...
T Consensus 654 ~~~w~~~a~a~~G~~~~A~~~~~~l~p~ 681 (811)
T 3qde_A 654 NNAWIICAETVVGRGDMAFDYYRKIAPA 681 (811)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhChh
Confidence 6655566777789999999999998764
No 4
>3gt5_A N-acetylglucosamine 2-epimerase; structural genomics, isomerase, PSI-2; 1.70A {Xylella fastidiosa}
Probab=68.86 E-value=5.4 Score=31.49 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHHHhhccccCC-CccccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHc--CChHHHHHHHHHHHH
Q psy10296 23 PSANIARALATIFSTNVRGFEA-GSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE--GNVDEAWTTAGGLYR 99 (116)
Q Consensus 23 ~~~~v~sAL~sI~~~N~~~~~~-g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~--G~~eeg~~i~~~~~~ 99 (116)
..++.....+.|++.-+...-. ..-|..+.+.++|+|. ......|+-.|..+|+.++++ |. ++-++.++.+++
T Consensus 265 ~~~~~~~~A~~l~~~~~~~gwd~~~Gg~~~~~d~~g~~~---~~~k~~W~qaEal~a~l~ly~~tgd-~~yl~~a~~~~~ 340 (402)
T 3gt5_A 265 EVEWLVPVARSLFDVAVARSWDAVRGGLCYGFAPDGTIC---DDDKYFWVQAESLAAAALLATRSGD-ERYWQWYDRLWA 340 (402)
T ss_dssp CCTTHHHHHHHHHHHHHHHHBCTTTCSBCSEECTTSCEE---ECCEEHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcccCCCCcEEEEEcCCCCee---eCCcceeHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence 3344555555666655543222 2346778888888764 355689999999888887765 54 345777777776
Q ss_pred HhHh
Q psy10296 100 RLRE 103 (116)
Q Consensus 100 ~~~~ 103 (116)
-+++
T Consensus 341 ~~~~ 344 (402)
T 3gt5_A 341 YAWQ 344 (402)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 5
>2jg0_A Periplasmic trehalase; family 37, hydrolase, inhibitor, glycoside hydrolase, glycosidase, 1-thiatrehazolin; HET: TTZ; 1.50A {Escherichia coli} SCOP: a.102.1.9 PDB: 2jf4_A* 2jjb_A* 2wyn_A*
Probab=56.75 E-value=36 Score=28.31 Aligned_cols=72 Identities=8% Similarity=0.089 Sum_probs=48.2
Q ss_pred CCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCC-c-ccchHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10296 21 IFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSE-E-VWTGVTYLLSAAMLYEGNVDEAWTTAGGLY 98 (116)
Q Consensus 21 v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~-E-vWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~ 98 (116)
++++++.++.++.+.+ .+.. ..|..-.. +. +..|=+ - ||+=++|-++..|...|..++|.++++...
T Consensus 383 i~~~e~a~~v~~~l~~-~l~t----~~GlrT~s-----~~-s~~yW~GpNvW~~~~~l~i~gL~~yG~~~~A~~la~~~l 451 (535)
T 2jg0_A 383 AAAKDRANKMATATKT-HLLQ----PGGLNTTS-----VK-SGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFL 451 (535)
T ss_dssp CSCHHHHHHHHHHHHH-HTEE----TTEECSBS-----CC-CSSSSSTTEECHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-Hhcc----CCCCCCCc-----CC-CccccCCCCcchhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678898888888874 2222 12222211 11 111111 2 999999999999999999999999998777
Q ss_pred HHhHh
Q psy10296 99 RRLRE 103 (116)
Q Consensus 99 ~~~~~ 103 (116)
+.+..
T Consensus 452 ~~~~~ 456 (535)
T 2jg0_A 452 TNVQH 456 (535)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76654
No 6
>1v7w_A Chitobiose phosphorylase; beta-sandwich, (alpha/alpha)6 barrel, transferase; HET: NDG NAG; 1.60A {Vibrio proteolyticus} SCOP: a.102.1.4 b.30.5.3 PDB: 1v7v_A* 1v7x_A*
Probab=55.56 E-value=56 Score=27.88 Aligned_cols=83 Identities=13% Similarity=0.028 Sum_probs=52.2
Q ss_pred HHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCC------C-CCccC--C-CCCCCcccchHHH
Q psy10296 6 CGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKP------N-GDRDR--S-AIQSEEVWTGVTY 75 (116)
Q Consensus 6 ~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p------~-G~~~~--~-~~qs~EvWtGv~Y 75 (116)
.+|.|+-+.| ++|+++.++++++|.+.-... .|..-...| + |.+.. + ......+|+--+.
T Consensus 578 ~~~~~al~~g-----~~~~e~a~~~l~~v~~~L~~~-----~G~~~~~p~~~~~~~~~g~~~~y~~~~~enG~~~~~~~~ 647 (807)
T 1v7w_A 578 ESNTLAVLSG-----LASQERGEQAMDAVDEHLFSP-----YGLHLNAPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNP 647 (807)
T ss_dssp HHHHHHHHTT-----CSCHHHHHHHHHHHHHHHEET-----TEECSEESCCCSCCTTTCGGGGSCTTBTTBTSEESTTHH
T ss_pred cchHHHHhhC-----CCCHHHHHHHHHHHHHhcCCC-----CceeecCCcccccCcCCceeeccCCccccccccccchHH
Confidence 5667776664 468999999999999875542 122111111 1 11110 0 1122377886666
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q psy10296 76 LLSAAMLYEGNVDEAWTTAGGLY 98 (116)
Q Consensus 76 ~lAa~mi~~G~~eeg~~i~~~~~ 98 (116)
-++-.+...|..++|+++.+.++
T Consensus 648 w~~~al~~~G~~d~A~~l~~~~~ 670 (807)
T 1v7w_A 648 WAWVAETKLGRGDRAMKFYDALN 670 (807)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHhC
Confidence 66667888899999999999885
No 7
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized conserved protein, structural genomics, NPPSFA; 2.10A {Thermus thermophilus}
Probab=54.61 E-value=74 Score=24.74 Aligned_cols=76 Identities=8% Similarity=-0.070 Sum_probs=47.1
Q ss_pred CCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCC-CcccchHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10296 21 IFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQS-EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYR 99 (116)
Q Consensus 21 v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs-~EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~ 99 (116)
++|+++.++.++++-+ +.. ....|..-+. |+..--.+..|= --||+=++|-++..|...|..++|.++++...+
T Consensus 310 ~~~~~~a~~v~~~l~~--~~~--~~~~gi~t~~-~~~~~y~~~~yw~gpvW~~~~~~~~~gL~~~G~~~~A~~l~~~~~~ 384 (420)
T 2z07_A 310 TPHQGRASLLAQEAER--WGE--KARYLLPSVD-PTSPFFEPGRYWRGPVWINVNWMVAEGFRDYGFAALAARLKADALA 384 (420)
T ss_dssp CSCHHHHHHHHHHHHH--HTT--TCSSSCBSBC-TTSTTCCTTSTTSSCBCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--Hhc--cCCCCcCcCC-CcCcccCCcCCCCCCcchhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4678888888887753 221 0112222111 111101111221 159999999999999999999999999998776
Q ss_pred Hh
Q psy10296 100 RL 101 (116)
Q Consensus 100 ~~ 101 (116)
.+
T Consensus 385 ~~ 386 (420)
T 2z07_A 385 LM 386 (420)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 8
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=54.45 E-value=11 Score=22.99 Aligned_cols=29 Identities=14% Similarity=0.204 Sum_probs=24.0
Q ss_pred HHhcCCCCCCC---CChhHHHHHHHHHHHhhccc
Q psy10296 11 LKASGVNTEAI---FPSANIARALATIFSTNVRG 41 (116)
Q Consensus 11 a~~~GL~~~~v---~~~~~v~sAL~sI~~~N~~~ 41 (116)
..+||+. +- .+.+.|+++-+.++..|-..
T Consensus 7 ~~ILgv~--~~~~~a~~~~Ik~~yr~Lm~~nhPD 38 (65)
T 2guz_B 7 CKILNIE--ESKGDLNMDKINNRFNYLFEVNDKE 38 (65)
T ss_dssp HHHTTCC--GGGTCCSHHHHHHHHHHHHHHTCGG
T ss_pred HHHhCCC--CCcCcCCHHHHHHHHHHHHHHhCCC
Confidence 4678997 55 79999999999999987543
No 9
>2qee_A BH0493 protein; amidohydrolase, structural genomics, PSI-2, protein structure initiative; 1.65A {Bacillus halodurans c-125} PDB: 3hka_A* 2q6e_A 3hk5_A* 3hk7_A* 3hk8_A* 3hk9_A* 2q08_A* 2pnk_A*
Probab=37.56 E-value=17 Score=30.22 Aligned_cols=40 Identities=18% Similarity=0.133 Sum_probs=33.0
Q ss_pred hhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCC
Q psy10296 4 QLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAG 45 (116)
Q Consensus 4 QL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g 45 (116)
.++|+||-++..=+ .+.|++.+.+-.+-|.-.|+++|++-
T Consensus 377 ~~Lg~~~~~lve~G--~~pd~~~l~~~v~~I~y~Na~~yf~~ 416 (437)
T 2qee_A 377 EVLIDKYDDILQAG--WEVTEEEIKRDVADLFSRNFWRFVGR 416 (437)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHTHHHHHHHTC
T ss_pred HHHHHHHHhhhhCC--CCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 57899998776555 34499999999999999999998754
No 10
>3rrs_A Cellobiose phosphorylase; GH94, alpha barrel, disaccharide phosphorylase, transferase; 1.70A {Cellulomonas uda} PDB: 3rsy_A* 3s4a_A* 3s4b_A* 3s4c_A* 3s4d_A* 2cqs_A* 2cqt_A* 3qfy_A* 3qfz_A* 3qg0_A* 3act_A* 3acs_A* 3afj_A*
Probab=37.23 E-value=1.4e+02 Score=26.11 Aligned_cols=85 Identities=14% Similarity=0.091 Sum_probs=50.6
Q ss_pred hHHHHHHHhcCCCCCCCCChh-------HHHHHHHHHHHhhccccCCCccccccCCCC-------C-CCccCCCC--C-C
Q psy10296 5 LCGYLFLKASGVNTEAIFPSA-------NIARALATIFSTNVRGFEAGSMGAVNGMKP-------N-GDRDRSAI--Q-S 66 (116)
Q Consensus 5 L~Gqw~a~~~GL~~~~v~~~~-------~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p-------~-G~~~~~~~--q-s 66 (116)
+.+|-|+-+.|+. +++ +++++|++|.+.=+..+ |.. .+.| + |....-.+ + -
T Consensus 592 ~~~q~~avlsGia-----~~e~~~~~~~~a~~al~~v~~~L~t~~-----Gir-ll~p~f~~~~~~~g~~~~Y~pg~~en 660 (822)
T 3rrs_A 592 IEPQGFAVMAGVG-----VGEGPQDTDAPAIKALDSVNEMLATDH-----GMV-LQYPAYTTYQVHMGEVSTYPPGYKEN 660 (822)
T ss_dssp HHHHHHHHHTTTT-----CCSSTTCTTSHHHHHHHHHHHHTEETT-----EEB-SEESCCSSCCTTSTTGGGSCTTBTTB
T ss_pred eccchhHhhcCCC-----CcccccchHHHHHHHHHHHHHHcCCCC-----eEE-EcCCCcccccCCCCcccccCCCcccc
Confidence 3578888887653 666 99999999988755553 321 1111 1 11111011 1 1
Q ss_pred CcccchHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10296 67 EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRR 100 (116)
Q Consensus 67 ~EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~~~ 100 (116)
..+|+=-+-=++..+...|..++|+++.+++...
T Consensus 661 G~iy~H~~~w~~~a~a~~G~~~~A~~~~~~l~p~ 694 (822)
T 3rrs_A 661 GGIFCHNNPWVIIAETVVGRGGRAFDYYKRITPA 694 (822)
T ss_dssp TCEETTTHHHHHHHHHHHTCHHHHHHHHHHHCHH
T ss_pred ccccccHHHHHHHHHHHcCCHHHHHHHHHHhCcc
Confidence 1455544433444555569999999999998774
No 11
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=36.56 E-value=33 Score=21.10 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=16.0
Q ss_pred CCChhHHHHHHHHHHHhhccc
Q psy10296 21 IFPSANIARALATIFSTNVRG 41 (116)
Q Consensus 21 v~~~~~v~sAL~sI~~~N~~~ 41 (116)
=+..++|+|.|++ |+..+++
T Consensus 43 gLT~~~VkSHLQK-YR~~l~r 62 (64)
T 1irz_A 43 KLTRENVASHLQK-FRVALKK 62 (64)
T ss_dssp TCCHHHHHHHHHH-HHHHHHS
T ss_pred CCCHHHHHHHHHH-HHHHHHc
Confidence 4789999999998 6666654
No 12
>1fp3_A N-acyl-D-glucosamine 2-epimerase; alpha/alpha-barrel, isomer; 2.00A {Sus scrofa} SCOP: a.102.1.3
Probab=34.75 E-value=1.5e+02 Score=22.63 Aligned_cols=64 Identities=14% Similarity=0.129 Sum_probs=33.9
Q ss_pred ccccCCCCCCCccC-CCCCCCcccchHHHHHHHHHHHc--CChH---HHHHHHHHHHHHhHh-cCCccccC
Q psy10296 48 GAVNGMKPNGDRDR-SAIQSEEVWTGVTYLLSAAMLYE--GNVD---EAWTTAGGLYRRLRE-DRVSGCET 111 (116)
Q Consensus 48 Ga~Ng~~p~G~~~~-~~~qs~EvWtGv~Y~lAa~mi~~--G~~e---eg~~i~~~~~~~~~~-~~g~~f~t 111 (116)
|..+...++|+|.. ...++.-.|+=.+...|...+++ |..+ .|.++.+-+++..++ ..|.+|.+
T Consensus 291 g~~~~~~~~g~~~~~l~d~~~~~W~qaea~~a~l~ly~~tgd~~yl~~a~~~~~~~~~~f~D~~~G~w~~~ 361 (402)
T 1fp3_A 291 GLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAEYTFRQFRDPEYGEWFGY 361 (402)
T ss_dssp SBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHTBCTTTSSBCCE
T ss_pred CEEEeecCCCCccccCcCCCcCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCcCCCCCceEee
Confidence 45565567777632 11244456777676666666654 5532 344444444444443 24555554
No 13
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=31.14 E-value=49 Score=24.23 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=24.5
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHHHHHhhc
Q psy10296 10 FLKASGVNTEAIFPSANIARALATIFSTNV 39 (116)
Q Consensus 10 ~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~ 39 (116)
|-..||.| -++.+|.|+.+.+.+.+-|=
T Consensus 107 Fe~~cGVG--V~VT~EqI~~~V~~~i~~~k 134 (187)
T 3tl4_X 107 MNENSGVG--IEITEDQVRNYVMQYIQENK 134 (187)
T ss_dssp HHHTTTTT--CCCCHHHHHHHHHHHHHHTH
T ss_pred HHHHCCCC--eEeCHHHHHHHHHHHHHHhH
Confidence 45689999 99999999999999997764
No 14
>2ll0_A Uncharacterized protein; structural genomics, joint center for structural genomics, J unknown function; NMR {Paracoccus denitrificans}
Probab=30.19 E-value=23 Score=23.90 Aligned_cols=15 Identities=20% Similarity=0.155 Sum_probs=13.6
Q ss_pred hhhHHHHHHHhcCCC
Q psy10296 3 DQLCGYLFLKASGVN 17 (116)
Q Consensus 3 DQL~Gqw~a~~~GL~ 17 (116)
+.|+|.|-|.++||.
T Consensus 30 NklLg~WAAe~lGlt 44 (104)
T 2ll0_A 30 NRLLGEWAAGLLGKT 44 (104)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 468999999999996
No 15
>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A
Probab=27.43 E-value=25 Score=26.22 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhHhcCCc
Q psy10296 88 DEAWTTAGGLYRRLREDRVS 107 (116)
Q Consensus 88 eeg~~i~~~~~~~~~~~~g~ 107 (116)
|| .++|+.+|..+|+++|+
T Consensus 37 EE-EklArdvY~~l~e~~g~ 55 (196)
T 3q4o_A 37 EE-EKLARDVYLTLYNKWKL 55 (196)
T ss_dssp HH-HHHHHHHHHHHHHHHCC
T ss_pred HH-HHHHHHHHHHHHHHhCC
Confidence 55 79999999999999885
No 16
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=27.19 E-value=44 Score=18.05 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=18.0
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhcc
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVR 40 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~ 40 (116)
.+++.++ ||++.+++||+.- ..|+.
T Consensus 9 ~~L~~MG----F~~~~a~~AL~~~-~~n~e 33 (43)
T 2g3q_A 9 EELSGMG----FTEEEAHNALEKC-NWDLE 33 (43)
T ss_dssp HHHHTTT----SCHHHHHHHHHHH-TSCHH
T ss_pred HHHHHcC----CCHHHHHHHHHHh-CcCHH
Confidence 4566666 7899999999985 34443
No 17
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=25.48 E-value=50 Score=22.04 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.9
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
.||..+|-|++++.+++.+.+ .|
T Consensus 50 IEGe~devm~vv~~~~e~~~~-~G 72 (109)
T 1yqh_A 50 LEGELDVLLDVVKRAQQACVD-AG 72 (109)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-TT
T ss_pred EEcCHHHHHHHHHHHHHHHHH-cC
Confidence 368899999999999999988 45
No 18
>2kzc_A Uncharacterized protein; DUF1476, JCSG, structutral genomics, PSI-biology, protein ST initiative, structural genomics; NMR {Jannaschia SP}
Probab=25.23 E-value=30 Score=22.52 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=13.3
Q ss_pred hhhHHHHHHHhcCCC
Q psy10296 3 DQLCGYLFLKASGVN 17 (116)
Q Consensus 3 DQL~Gqw~a~~~GL~ 17 (116)
+-|+|.|-|.++||.
T Consensus 11 NklLglWAAe~lGlt 25 (85)
T 2kzc_A 11 NKLMGLWVAEVLGKS 25 (85)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 458999999999996
No 19
>2okx_A Rhamnosidase B; alpha barrel, glycoside hydrolase family 78, I hydrolase; 1.90A {Bacillus SP}
Probab=25.01 E-value=3.5e+02 Score=23.74 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=46.8
Q ss_pred hHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHc
Q psy10296 5 LCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE 84 (116)
Q Consensus 5 L~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~ 84 (116)
..++.++-+.|| +|+++.+++ +...+.+ |+|-. +...+|+ .+-++..+...
T Consensus 764 ~~s~~lall~Gl-----~p~~~~~av-~~Ll~~~----------------~~gy~-----~~Gt~w~--~~~li~aLar~ 814 (956)
T 2okx_A 764 MQTQVVAYLCGV-----AQGEREAVI-EGYLSSP----------------PPAFV-----QIGSPFM--SFFYYEALEKA 814 (956)
T ss_dssp HHHHHHHHHTTC-----SCHHHHHHH-HHHHHSC----------------CTTSB-----CCCSHHH--HHHHHHHHHHT
T ss_pred cHHHHHHHHhCC-----CCHHHHHHH-HHHhcCC----------------Ccccc-----cCCChhH--HHHHHHHHHHC
Confidence 357778878765 577776655 5544421 22211 1135784 47788888999
Q ss_pred CChHHHHHHHHHHHHHhHh
Q psy10296 85 GNVDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 85 G~~eeg~~i~~~~~~~~~~ 103 (116)
|..++|.++++..|....+
T Consensus 815 G~~d~A~~ll~~~~~~~~~ 833 (956)
T 2okx_A 815 GRQTLMLDDIRRNYGQMLR 833 (956)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999988876555
No 20
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=24.55 E-value=45 Score=21.92 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=19.9
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
.||..+|-+++++.+++.+.+ .|
T Consensus 49 IEGe~devm~vv~~~~e~~~~-~G 71 (104)
T 1lxj_A 49 IEGPWDDVMGLIGEIHEYGHE-KG 71 (104)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-TT
T ss_pred EEcCHHHHHHHHHHHHHHHHH-cC
Confidence 368899999999999999998 44
No 21
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=23.59 E-value=28 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=18.9
Q ss_pred HhcCCCCCCCCChhHHHHHHHHHHHhhccc
Q psy10296 12 KASGVNTEAIFPSANIARALATIFSTNVRG 41 (116)
Q Consensus 12 ~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~ 41 (116)
+|+.++ |+++++++||+.....|+.+
T Consensus 15 ~L~~MG----F~~~~a~~AL~~t~~~nve~ 40 (64)
T 1whc_A 15 SLIEMG----FPRGRAEKALALTGNQGIEA 40 (64)
T ss_dssp HHHTTT----CCHHHHHHHHHHHTSCCHHH
T ss_pred HHHHcC----CCHHHHHHHHHHhcCCCHHH
Confidence 455555 78999999999776555554
No 22
>1rij_A E6APN1 peptide; Trp-CAGE, E6-binding domain, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.32.1.1
Probab=22.20 E-value=32 Score=17.41 Aligned_cols=9 Identities=22% Similarity=0.342 Sum_probs=6.1
Q ss_pred hhhHHHHHH
Q psy10296 3 DQLCGYLFL 11 (116)
Q Consensus 3 DQL~Gqw~a 11 (116)
..|+|||.-
T Consensus 3 qellgqwlk 11 (26)
T 1rij_A 3 QELLGQWLK 11 (26)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 357888864
No 23
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=21.87 E-value=49 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.8
Q ss_pred HHHhcCCCCCCCCChhHHHHHHHH
Q psy10296 10 FLKASGVNTEAIFPSANIARALAT 33 (116)
Q Consensus 10 ~a~~~GL~~~~v~~~~~v~sAL~s 33 (116)
-+++.+++ +|++.++.||+.
T Consensus 15 Ia~Lm~mG----Fsr~~ai~AL~~ 34 (52)
T 2ooa_A 15 IAKLMGEG----YAFEEVKRALEI 34 (52)
T ss_dssp HHHHHHTT----CCHHHHHHHHHH
T ss_pred HHHHHHcC----CCHHHHHHHHHH
Confidence 35677776 899999999975
No 24
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=21.78 E-value=34 Score=23.67 Aligned_cols=15 Identities=7% Similarity=0.240 Sum_probs=13.3
Q ss_pred ChhHHHHHHHHHHHh
Q psy10296 23 PSANIARALATIFST 37 (116)
Q Consensus 23 ~~~~v~sAL~sI~~~ 37 (116)
|++||++||+.||-.
T Consensus 19 D~eKV~~Al~nifp~ 33 (138)
T 3d7a_A 19 DIRKVKKAMLNLIPG 33 (138)
T ss_dssp CHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHhCCC
Confidence 789999999999864
No 25
>1lxn_A Hypothetical protein MTH1187; hypothetical structure, structural genomics, PSI, protein ST initiative; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.48.1
Probab=21.68 E-value=67 Score=20.83 Aligned_cols=23 Identities=13% Similarity=0.118 Sum_probs=20.0
Q ss_pred HcC-ChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEG-NVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G-~~eeg~~i~~~~~~~~~~~~g 106 (116)
.|| ..+|-|++++.+++.+.+ .|
T Consensus 45 iEG~e~devm~vv~~~~e~~~~-~G 68 (99)
T 1lxn_A 45 LEAEDLDELMEAVKAAHEAVLQ-AG 68 (99)
T ss_dssp EEESSHHHHHHHHHHHHHHHHH-TT
T ss_pred EECCCHHHHHHHHHHHHHHHHH-cC
Confidence 368 899999999999999998 45
No 26
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=21.28 E-value=34 Score=24.05 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=13.2
Q ss_pred ChhHHHHHHHHHHHh
Q psy10296 23 PSANIARALATIFST 37 (116)
Q Consensus 23 ~~~~v~sAL~sI~~~ 37 (116)
|++||++||+.+|-.
T Consensus 15 D~eKV~~Al~nifp~ 29 (147)
T 2pzz_A 15 DKYKVKKAILNIFPK 29 (147)
T ss_dssp CHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHhCCC
Confidence 789999999999863
Done!