Query psy10296
Match_columns 116
No_of_seqs 100 out of 178
Neff 5.5
Searched_HMMs 13730
Date Fri Aug 16 22:49:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10296.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10296hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fp3a_ a.102.1.3 (A:) N-acyl- 61.0 14 0.00099 26.8 7.1 89 23-115 265-356 (402)
2 d2afaa1 a.102.1.3 (A:4-415) Pu 57.1 32 0.0023 25.1 9.2 87 11-103 259-349 (411)
3 d1oqya1 a.5.2.1 (A:160-200) DN 43.2 8.7 0.00064 20.2 2.5 26 11-41 9-34 (41)
4 d1f44a1 a.60.9.1 (A:20-129) Cr 36.6 14 0.00099 22.4 3.0 29 11-41 80-108 (110)
5 d1v7wa1 a.102.1.4 (A:271-801) 33.1 79 0.0058 22.6 9.1 81 20-100 317-402 (531)
6 d2jg0a1 a.102.1.9 (A:37-547) P 31.3 64 0.0046 24.4 6.8 72 21-103 377-450 (511)
7 d2g3qa1 a.5.2.1 (A:1339-1381) 28.5 19 0.0014 19.3 2.3 18 12-33 10-27 (43)
8 d2d5ja1 a.102.1.7 (A:1-377) Un 27.3 1E+02 0.0075 22.1 8.1 83 25-109 171-264 (377)
9 d2qeec1 c.1.9.8 (C:2-416) Unch 26.7 16 0.0011 27.6 2.3 39 4-44 374-412 (415)
10 d1ttea1 a.5.2.1 (A:161-215) Ub 22.7 20 0.0015 20.2 1.7 20 22-44 21-40 (55)
11 d1yqha1 d.58.48.1 (A:1-101) Hy 21.5 31 0.0023 21.1 2.7 23 83-106 47-69 (101)
12 d1lxja_ d.58.48.1 (A:) Hypothe 21.3 27 0.002 21.7 2.3 24 83-107 49-72 (104)
13 d1fafa_ a.2.3.1 (A:) Large T a 20.4 50 0.0036 19.1 3.3 28 9-36 12-39 (79)
No 1
>d1fp3a_ a.102.1.3 (A:) N-acyl-D-glucosamine 2-epimerase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=61.00 E-value=14 Score=26.84 Aligned_cols=89 Identities=12% Similarity=0.037 Sum_probs=46.1
Q ss_pred ChhHHHHHHHHHHHhhcc-ccCCCccccccCCCCCCCccCCCCCCC-cccchHHHHHHHHHHHc-CChHHHHHHHHHHHH
Q psy10296 23 PSANIARALATIFSTNVR-GFEAGSMGAVNGMKPNGDRDRSAIQSE-EVWTGVTYLLSAAMLYE-GNVDEAWTTAGGLYR 99 (116)
Q Consensus 23 ~~~~v~sAL~sI~~~N~~-~~~~g~~Ga~Ng~~p~G~~~~~~~qs~-EvWtGv~Y~lAa~mi~~-G~~eeg~~i~~~~~~ 99 (116)
+++.+.+|.+.++..=.+ .+.....|..+...++|.+........ --|+=.+...|...+++ -..++.++.++.+++
T Consensus 265 ~~~~~~~a~~~~~~~~~~~g~d~~~ggl~~~~~~~g~~~~~~~~~~k~~W~qaE~i~a~l~ly~~tgd~~~l~~a~~l~~ 344 (402)
T d1fp3a_ 265 DAKLRAHVIDTFLLLPFRSGWDADHGGLFYFQDADGLCPTQLEWAMKLWWPHSEAMIAFLMGYSESGDPALLRLFYQVAE 344 (402)
T ss_dssp CHHHHHHHHHHHTHHHHHHHBCTTTCSBCSCEETTSCCCSSTTTTCEEHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHhCccCCCCeEEEEecCCCCccccccchHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 445566666554332111 111122367777778887765434333 34555554444443433 233445777888877
Q ss_pred HhHhcCCccccCCCCC
Q psy10296 100 RLREDRVSGCETAPEG 115 (116)
Q Consensus 100 ~~~~~~g~~f~tPE~~ 115 (116)
-+++ .|..||-|
T Consensus 345 ~~~~----~f~D~~~G 356 (402)
T d1fp3a_ 345 YTFR----QFRDPEYG 356 (402)
T ss_dssp HHHH----HTBCTTTS
T ss_pred HHHH----hCCCCCCC
Confidence 7766 34445544
No 2
>d2afaa1 a.102.1.3 (A:4-415) Putative NAG isomerase YihS {Salmonella typhimurium [TaxId: 90371]}
Probab=57.14 E-value=32 Score=25.11 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=50.3
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhccccC--CCccccccCCCCCCCccCCCCCCCcccchHHHHHHHHHHHc--CC
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVRGFE--AGSMGAVNGMKPNGDRDRSAIQSEEVWTGVTYLLSAAMLYE--GN 86 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~--~g~~Ga~Ng~~p~G~~~~~~~qs~EvWtGv~Y~lAa~mi~~--G~ 86 (116)
+.+++.. .+.+.+....+.+.|++.-..... .+.-|......++|+|.. .+.--|+=.|...|...+++ |.
T Consensus 259 ~~~~~~~--~~~~~~~~l~~A~~l~~~~~~~g~d~d~~gg~~~~~~~~g~~~~---~~k~~W~qaEai~a~l~ly~~tgd 333 (411)
T d2afaa1 259 HAALEAR--FETPPAWLLEDAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIV---RERVRWPIVEAMGTAYALYTLTDD 333 (411)
T ss_dssp HHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHBSCSSSSSBCSCBCTTSCBSS---CCEEHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcc--cccCcHHHHHHHHHHHHHHHHhCcccCCCCeeEeeecCCCCcCC---CCccchHHHHHHHHHHHHHHhhCC
Confidence 4555665 566666655555566654333211 123356677778887753 23346776677777766655 55
Q ss_pred hHHHHHHHHHHHHHhHh
Q psy10296 87 VDEAWTTAGGLYRRLRE 103 (116)
Q Consensus 87 ~eeg~~i~~~~~~~~~~ 103 (116)
++-++.++.+++-++.
T Consensus 334 -~~yl~~a~~~~~~~~~ 349 (411)
T d2afaa1 334 -SQYEEWYQKWWDYCIK 349 (411)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3346667777776655
No 3
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.21 E-value=8.7 Score=20.17 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=19.0
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhccc
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVRG 41 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~ 41 (116)
.+++.++ |++++++.||++-. +|+.+
T Consensus 9 ~~L~~MG----F~~~~a~~AL~~~~-~N~e~ 34 (41)
T d1oqya1 9 TEIMSMG----YERERVVAALRASY-NNPHR 34 (41)
T ss_dssp HHHHTTT----CCSHHHHHHHHHSC-SSTTH
T ss_pred HHHHHcC----CCHHHHHHHHHHhC-CCHHH
Confidence 4566666 89999999999863 45543
No 4
>d1f44a1 a.60.9.1 (A:20-129) Cre recombinase {Bacteriophage P1 [TaxId: 10678]}
Probab=36.63 E-value=14 Score=22.44 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=21.8
Q ss_pred HHhcCCCCCCCCChhHHHHHHHHHHHhhccc
Q psy10296 11 LKASGVNTEAIFPSANIARALATIFSTNVRG 41 (116)
Q Consensus 11 a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~ 41 (116)
-+.+|++ +..+...|+.+|+.|.+.+..+
T Consensus 80 ~r~~g~~--~p~~~~~V~~~l~~i~R~~~~~ 108 (110)
T d1f44a1 80 HRRSGLP--RPSDSNAVSLVMRRIRKENVDA 108 (110)
T ss_dssp HHHTTCC--CGGGSHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCC--CCcCCHHHHHHHHHccccccCC
Confidence 3567887 6667778888888888877665
No 5
>d1v7wa1 a.102.1.4 (A:271-801) Chitobiose phosphorylase ChbP {Vibrio proteolyticus [TaxId: 671]}
Probab=33.06 E-value=79 Score=22.63 Aligned_cols=81 Identities=10% Similarity=-0.043 Sum_probs=49.2
Q ss_pred CCCChhHHHHHHHHHHHhhccccCCCcc-ccccCCCC-CCCccCCC---CCCCcccchHHHHHHHHHHHcCChHHHHHHH
Q psy10296 20 AIFPSANIARALATIFSTNVRGFEAGSM-GAVNGMKP-NGDRDRSA---IQSEEVWTGVTYLLSAAMLYEGNVDEAWTTA 94 (116)
Q Consensus 20 ~v~~~~~v~sAL~sI~~~N~~~~~~g~~-Ga~Ng~~p-~G~~~~~~---~qs~EvWtGv~Y~lAa~mi~~G~~eeg~~i~ 94 (116)
.+.++++++++|+.+.+.-+....--.. .......+ .+....-. .....+|+-.+.-+|..+...|..++|+++.
T Consensus 317 g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~al~~~G~~d~A~~~~ 396 (531)
T d1v7wa1 317 GLASQERGEQAMDAVDEHLFSPYGLHLNAPSFSTPNDDIGFVTRVYQGVKENGAIFSHPNPWAWVAETKLGRGDRAMKFY 396 (531)
T ss_dssp TCSCHHHHHHHHHHHHHHHEETTEECSEESCCCSCCTTTCGGGGSCTTBTTBTSEESTTHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhcCchhhhccccccccchhhcccccccCCccccCCCcCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4678999999999998875544210000 00000000 01111111 1223689999998998899999999999988
Q ss_pred HHHHHH
Q psy10296 95 GGLYRR 100 (116)
Q Consensus 95 ~~~~~~ 100 (116)
+..+..
T Consensus 397 ~~~~~~ 402 (531)
T d1v7wa1 397 DALNPY 402 (531)
T ss_dssp HHHCGG
T ss_pred Hhhchh
Confidence 876543
No 6
>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA {Escherichia coli [TaxId: 562]}
Probab=31.31 E-value=64 Score=24.42 Aligned_cols=72 Identities=8% Similarity=0.089 Sum_probs=47.8
Q ss_pred CCChhHHHHHHHHHHHhhccccCCCccccccCCCCCCCccCCCCCCC--cccchHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10296 21 IFPSANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDRSAIQSE--EVWTGVTYLLSAAMLYEGNVDEAWTTAGGLY 98 (116)
Q Consensus 21 v~~~~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~~~~qs~--EvWtGv~Y~lAa~mi~~G~~eeg~~i~~~~~ 98 (116)
+.+++++.+.++.+-+..... .|.+-... . +..|=+ -+|.=++|-+.-.|..-|..+.|.+|++...
T Consensus 377 ~~~~~~~~~~~~~l~~~~~~~-----gGipt~~~-----~-~~~yWrgPnvW~p~n~lii~gL~~yG~~e~A~~la~~~l 445 (511)
T d2jg0a1 377 AAAKDRANKMATATKTHLLQP-----GGLNTTSV-----K-SGQQWDAPNGWAPLQWVATEGLQNYGQKEVAMDISWHFL 445 (511)
T ss_dssp CSCHHHHHHHHHHHHHHTEET-----TEECSBSC-----C-CSSSSSTTEECHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccC-----CCcCCCCC-----C-CCCCCCCCCcCHhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888888777775542111 12222111 1 122322 4899999999999999999999999998877
Q ss_pred HHhHh
Q psy10296 99 RRLRE 103 (116)
Q Consensus 99 ~~~~~ 103 (116)
++++.
T Consensus 446 ~~~~~ 450 (511)
T d2jg0a1 446 TNVQH 450 (511)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76644
No 7
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=28.51 E-value=19 Score=19.29 Aligned_cols=18 Identities=28% Similarity=0.449 Sum_probs=14.7
Q ss_pred HhcCCCCCCCCChhHHHHHHHH
Q psy10296 12 KASGVNTEAIFPSANIARALAT 33 (116)
Q Consensus 12 ~~~GL~~~~v~~~~~v~sAL~s 33 (116)
.++|.+ |+++..+.||++
T Consensus 10 eL~~MG----F~e~~A~~AL~k 27 (43)
T d2g3qa1 10 ELSGMG----FTEEEAHNALEK 27 (43)
T ss_dssp HHHTTT----SCHHHHHHHHHH
T ss_pred HHHhcC----CCHHHHHHHHHH
Confidence 467776 899999999975
No 8
>d2d5ja1 a.102.1.7 (A:1-377) Unsaturated glucuronyl hydrolase {Bacillus sp. GL1 [TaxId: 84635]}
Probab=27.26 E-value=1e+02 Score=22.12 Aligned_cols=83 Identities=22% Similarity=0.129 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHhhccccCCCccccccCCCCCCCccC-CCCCC---Ccccch----HHHHHHHHHHHcCChHHHHHHHHH
Q psy10296 25 ANIARALATIFSTNVRGFEAGSMGAVNGMKPNGDRDR-SAIQS---EEVWTG----VTYLLSAAMLYEGNVDEAWTTAGG 96 (116)
Q Consensus 25 ~~v~sAL~sI~~~N~~~~~~g~~Ga~Ng~~p~G~~~~-~~~qs---~EvWtG----v~Y~lAa~mi~~G~~eeg~~i~~~ 96 (116)
+.+.+..++..++.+.+.. +.+=.++.-..+|++.. ...|. ..+|++ +-|+++-....-+..+ =++++++
T Consensus 171 ~~A~~h~~~~~~~l~r~d~-s~~~~~~~~~~tG~~~~~~t~qG~~~~s~WsRGqaW~i~gl~~~~~~t~~~~-~l~~a~~ 248 (377)
T d2d5ja1 171 RVAEAHALKSRRFLVRGDD-SSYHTFYFDPENGNAIRGGTHQGNTDGSTWTRGQAWGIYGFALNSRYLGNAD-LLETAKR 248 (377)
T ss_dssp HHHHHHHHHHHHHTBBTTS-CBCSEEEECTTTCCEEEEECSSSSSTTSCBHHHHHHHHHHHHHHHHHHTCHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCC-CeEEEEEecCCCCcccCCCCCCCCCCcchHhhchHHHHHHHHHHHHHhCChH-HHHHHHH
Confidence 5556666777777776522 22222222223454322 12222 358998 7788887777767644 3777777
Q ss_pred HHHHhHhc---CCccc
Q psy10296 97 LYRRLRED---RVSGC 109 (116)
Q Consensus 97 ~~~~~~~~---~g~~f 109 (116)
+-+.+.+. .|+++
T Consensus 249 ~a~~~l~~~~~dgi~~ 264 (377)
T d2d5ja1 249 MARHFLARVPEDGVVY 264 (377)
T ss_dssp HHHHHHTTCCTTSCCB
T ss_pred HHHHHHHhCCCCCCcc
Confidence 77776653 45554
No 9
>d2qeec1 c.1.9.8 (C:2-416) Uncharacterized protein BH0493 {Bacillus halodurans [TaxId: 86665]}
Probab=26.68 E-value=16 Score=27.58 Aligned_cols=39 Identities=18% Similarity=0.145 Sum_probs=31.0
Q ss_pred hhHHHHHHHhcCCCCCCCCChhHHHHHHHHHHHhhccccCC
Q psy10296 4 QLCGYLFLKASGVNTEAIFPSANIARALATIFSTNVRGFEA 44 (116)
Q Consensus 4 QL~Gqw~a~~~GL~~~~v~~~~~v~sAL~sI~~~N~~~~~~ 44 (116)
.++|.|+-.++-=+ .+.+++.+.+..+-|+-.|.++|+|
T Consensus 374 ~~L~~~v~d~v~~g--~~~~~~~l~~~v~dI~y~Na~~yfg 412 (415)
T d2qeec1 374 EVLIDKYDDILQAG--WEVTEEEIKRDVADLFSRNFWRFVG 412 (415)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHHTHHHHHHHT
T ss_pred HHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 46788888765222 4568889999999999999999864
No 10
>d1ttea1 a.5.2.1 (A:161-215) Ubiquitin-protein ligase ubc1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.72 E-value=20 Score=20.17 Aligned_cols=20 Identities=20% Similarity=0.426 Sum_probs=15.7
Q ss_pred CChhHHHHHHHHHHHhhccccCC
Q psy10296 22 FPSANIARALATIFSTNVRGFEA 44 (116)
Q Consensus 22 ~~~~~v~sAL~sI~~~N~~~~~~ 44 (116)
||++||..+|| +.|++.+..
T Consensus 21 F~rdKvI~VLr---rlgik~~~~ 40 (55)
T d1ttea1 21 FEKDKIVEVLR---RLGVKSLDP 40 (55)
T ss_dssp CCHHHHHHHHH---HSCCSSCCS
T ss_pred CCchhHHHHHH---HhCcCCCCc
Confidence 78999999998 467777553
No 11
>d1yqha1 d.58.48.1 (A:1-101) Hypothetical protein BC0424 {Bacillus cereus [TaxId: 1396]}
Probab=21.49 E-value=31 Score=21.08 Aligned_cols=23 Identities=13% Similarity=0.076 Sum_probs=19.7
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCC
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRV 106 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g 106 (116)
.||..++-+++++.+++.+.+ .|
T Consensus 47 IEGe~d~v~~~v~~~~e~~~~-~G 69 (101)
T d1yqha1 47 LEGELDVLLDVVKRAQQACVD-AG 69 (101)
T ss_dssp EEECHHHHHHHHHHHHHHHHH-TT
T ss_pred eeCCHHHHHHHHHHHHHHHHH-cC
Confidence 368889999999999999988 45
No 12
>d1lxja_ d.58.48.1 (A:) Hypothetical protein YB1001C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=21.28 E-value=27 Score=21.66 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=20.3
Q ss_pred HcCChHHHHHHHHHHHHHhHhcCCc
Q psy10296 83 YEGNVDEAWTTAGGLYRRLREDRVS 107 (116)
Q Consensus 83 ~~G~~eeg~~i~~~~~~~~~~~~g~ 107 (116)
.||..+|-|++++.+++.+.+ .|.
T Consensus 49 IEG~~del~~~v~~~he~~~~-~G~ 72 (104)
T d1lxja_ 49 IEGPWDDVMGLIGEIHEYGHE-KGY 72 (104)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH-TTC
T ss_pred EECCHHHHHHHHHHHHHHHHH-cCC
Confidence 378889999999999999988 553
No 13
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}
Probab=20.35 E-value=50 Score=19.10 Aligned_cols=28 Identities=7% Similarity=-0.103 Sum_probs=20.1
Q ss_pred HHHHhcCCCCCCCCChhHHHHHHHHHHH
Q psy10296 9 LFLKASGVNTEAIFPSANIARALATIFS 36 (116)
Q Consensus 9 w~a~~~GL~~~~v~~~~~v~sAL~sI~~ 36 (116)
=+..++||+.+.-.+.+.|++|-+..-.
T Consensus 12 ~~y~iLgl~~~~~~~~~~IkkaYr~l~~ 39 (79)
T d1fafa_ 12 RLLELLKLPRQLWGDFGRMQQAYKQQSL 39 (79)
T ss_dssp HHHHHHTCCSSSTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCCHHHHHHHHHHHHH
Confidence 3558999983234588899988877655
Done!