RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy10296
         (116 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 32.7 bits (74), Expect = 0.020
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 39/105 (37%)

Query: 4   QLCGYL-FLKASGVNTE------------------AIFPSA---------NIARALATIF 35
           QL  Y+   K  G                      A+  +          ++ +A+  +F
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304

Query: 36  STNVRGFEAGSMGAVNGMKPNGDRDRSAIQ-SEEVWTGV-TYLLS 78
              VR +EA          PN     S ++ S E   GV + +LS
Sbjct: 305 FIGVRCYEA---------YPNTSLPPSILEDSLENNEGVPSPMLS 340



 Score = 28.9 bits (64), Expect = 0.39
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 32/100 (32%)

Query: 11   LKASG-VNTEAIFP-------SANIARALATIFS-------TNVRG---------FEAG- 45
            LK+ G +  +A F        +A +A +LA + S          RG          E G 
Sbjct: 1747 LKSKGLIPADATFAGHSLGEYAA-LA-SLADVMSIESLVEVVFYRGMTMQVAVPRDELGR 1804

Query: 46   ---SMGAVNGMKPNGDRDRSAIQS--EEVWTGVTYLLSAA 80
                M A+N  +      + A+Q   E V     +L+   
Sbjct: 1805 SNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844


>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein
           structure initiati midwest center for structural
           genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas
           gingivalis}
          Length = 303

 Score = 25.9 bits (56), Expect = 3.4
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 49  AVNGMKPNGDRDRSAIQSEEVWTGVTY 75
            VN +  +G      + +   W GVTY
Sbjct: 252 VVNDLIRSGRASVEVLDTTARWFGVTY 278


>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase,
           hyperthermophIle, ribokinase ribokinase fold; 1.70A
           {Methanococcus jannaschii} PDB: 2c49_A
          Length = 302

 Score = 25.2 bits (56), Expect = 5.2
 Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 4/62 (6%)

Query: 11  LKASGVNTEAIFPSANIARALATIFST----NVRGFEAGSMGAVNGMKPNGDRDRSAIQS 66
           LK   +N   ++ S       A IF+      +  F  G+      + P          +
Sbjct: 78  LKNLDINISKLYYSEEEETPKAWIFTDKDNNQITFFLWGAAKHYKELNPPNFNTEIVHIA 137

Query: 67  EE 68
             
Sbjct: 138 TG 139


>1k87_A PUTA, proline dehydrogenase, proline dehydroge; multi-functional
           protein, transcripti repressor, shuttling, dimer,
           oxidoreductase; HET: FAD 1PE; 2.00A {Escherichia coli}
           SCOP: a.176.1.1 c.1.23.2
          Length = 669

 Score = 24.6 bits (53), Expect = 9.3
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 58  DRDRSAIQS-----EEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRRLREDRVS 107
              R+AI +     E     V+ LL  A L +   ++A   A  L  +LR  + +
Sbjct: 89  SVSRAAITAAYRRPETEA--VSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNA 141


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0844    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,783,755
Number of extensions: 96807
Number of successful extensions: 171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 13
Length of query: 116
Length of database: 6,701,793
Length adjustment: 79
Effective length of query: 37
Effective length of database: 4,496,034
Effective search space: 166353258
Effective search space used: 166353258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.2 bits)