RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10296
         (116 letters)



>d1q32a2 d.136.1.3 (A:302-538) Tyrosyl-DNA phosphodiesterase TDP1
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 237

 Score = 25.8 bits (56), Expect = 1.2
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 20  AIFPSANIARALATIFSTNVRGFEAGSM-------GAVNGMKPNGDRDRSAIQSEEVWTG 72
            ++ SAN+++      S   R +EAG +                  RDR           
Sbjct: 158 CLYTSANLSQTAWGTVSRKPRNYEAGVLYHSRRLANTRKVTCRTFTRDRRGCAGNPTHVA 217

Query: 73  VTYLLSAAMLYEGNVDEAWT 92
           V + L     Y+   DE + 
Sbjct: 218 VPFTLPVI-PYDLAEDECFC 236


>d1usha1 d.114.1.1 (A:363-550) 5'-nucleotidase (syn. UDP-sugar
           hydrolase), C-terminal domain {Escherichia coli [TaxId:
           562]}
          Length = 188

 Score = 25.8 bits (56), Expect = 1.4
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 58  DRDRSAIQSEEVWTGVTYLLSAAMLYEGNVDEAWTTAGGLYRR 100
           + DR  ++  +  T +  L+ AA +     D A  + GG+   
Sbjct: 10  EGDRDKVRFVQ--TNMGRLILAAQMDRTGADFAVMSGGGIRDS 50


>d1eera_ a.26.1.2 (A:) Erythropoietin {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 166

 Score = 23.7 bits (51), Expect = 5.8
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 65 QSEEVWTGVTYLLSAAMLYEGNV 87
          Q+ EVW G+  L  A +  +  +
Sbjct: 59 QAVEVWQGLALLSEAVLRGQALL 81


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.267   0.0546    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,604
Number of extensions: 16108
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 5
Length of query: 116
Length of database: 2,407,596
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,405,306
Effective search space: 60428158
Effective search space used: 60428158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.3 bits)