BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10297
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 64/98 (65%), Gaps = 3/98 (3%)
Query: 131 KMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPH 190
K Q + + +K+ R L +E KA TLGIIM FT+CWLPFF++ ++ F + +L+P
Sbjct: 205 KEQIRKIDRASKRKRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF--NRDLVPD 262
Query: 191 SISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228
+ F WLGYANS +NP+IY + DFRK F+++L F
Sbjct: 263 WLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF 299
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 44/100 (44%), Positives = 64/100 (64%), Gaps = 5/100 (5%)
Query: 131 KMQTNNLQQTTKK--LRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI 188
K Q + + +K+ R L +E KA TLGIIM FT+CWLPFF++ ++ F + +L+
Sbjct: 205 KEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVF--NRDLV 262
Query: 189 PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228
P + F WLGYANS +NP+IY + DFRK F+++L F
Sbjct: 263 PDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLLAF 301
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T +F L KE KA TLGIIM FT+CWLPFF++ ++ +
Sbjct: 379 TPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQ 435
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSL 233
LI + W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 436 DNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSL 483
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T +F L KE KA TLGIIM FT+CWLPFF++ ++ +
Sbjct: 378 TPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQ 434
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSL 233
LI + W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 435 DNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSL 482
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T +F L KE KA TLGIIM FT+CWLPFF++ ++ +
Sbjct: 379 TPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQ 435
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSL 233
LI + W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 436 DNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSL 483
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 3/105 (2%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN R K + T + +ERKA+ LG IM+AF +CW+P+F+ ++ F
Sbjct: 343 TPN-RAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAF--C 399
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK 229
+ F +WLGY NS LNP+IY N +F+K F++IL+ +
Sbjct: 400 KNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILHIR 444
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/109 (41%), Positives = 62/109 (56%), Gaps = 4/109 (3%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T +F L KE KA TLGIIM FT+CWLPFF++ ++ +
Sbjct: 347 TPNRAKRVITTFRTGTWDAYKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQ 403
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSL 233
LI + W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 404 DNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSL 451
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 2/102 (1%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T L +E+KA+ + I++ AF VCWLPFF+ ++ +
Sbjct: 371 TPNRAKRVITTFRTGTWDAYGVPL-REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT 429
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
+ P + S WLGY NS LNPVIY T N +FRK F +IL
Sbjct: 430 CHVSPE-LYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 73.9 bits (180), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPV 209
KE KA TLGIIM FT+CWLPFF++ ++ + LI + W+GY NS NP+
Sbjct: 416 KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQDNLIRKEVYILLNWIGYVNSGFNPL 473
Query: 210 IYATLNRDFRKPFQQILYFKCSSL 233
IY + DFR FQ++L + SSL
Sbjct: 474 IYCR-SPDFRIAFQELLCLRRSSL 496
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPV 209
KE KA TLGIIM FT+CWLPFF++ ++ + LI + W+GY NS NP+
Sbjct: 267 KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQDNLIRKEVYILLNWIGYVNSGFNPL 324
Query: 210 IYATLNRDFRKPFQQILYFKCSSL 233
IY + DFR FQ++L + SSL
Sbjct: 325 IYCR-SPDFRIAFQELLCLRRSSL 347
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPV 209
KE KA TLGIIM FT+CWLPFF++ ++ + LI + W+GY NS NP+
Sbjct: 268 KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQDNLIRKEVYILLNWIGYVNSGFNPL 325
Query: 210 IYATLNRDFRKPFQQILYFKCSSL 233
IY + DFR FQ++L + SSL
Sbjct: 326 IYCR-SPDFRIAFQELLCLRRSSL 348
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPV 209
KE KA TLGIIM FT+CWLPFF++ ++ + LI + W+GY NS NP+
Sbjct: 244 KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQDNLIRKEVYILLNWIGYVNSGFNPL 301
Query: 210 IYATLNRDFRKPFQQILYFKCSSL 233
IY + DFR FQ++L + SSL
Sbjct: 302 IYCR-SPDFRIAFQELLCLRRSSL 324
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 4/96 (4%)
Query: 138 QQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFL 197
+Q K +F L KE KA TLGIIM FT+CWLPFF++ ++ + LI +
Sbjct: 200 RQLQKIDKFCL-KEHKALKTLGIIMGTFTLCWLPFFIVNIVH--VIQDNLIRKEVYILLN 256
Query: 198 WLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSL 233
W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 257 WIGYVNSGFNPLIYCR-SPDFRIAFQELLCLRRSSL 291
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 148 LAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLN 207
L KE+KA+ TL I+ AF + W P+ ++ L+ F S IP + + WL Y NS +N
Sbjct: 366 LIKEKKAAQTLSAILLAFIITWTPYNIMVLVNTFCDS--CIPKTYWNLGYWLCYINSTVN 423
Query: 208 PVIYATLNRDFRKPFQQILYFKCS 231
PV YA N+ FR F+ +L +C
Sbjct: 424 PVCYALCNKTFRTTFKTLLLCQCD 447
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T R L KE A+ +L II+ F +CWLP ++ F
Sbjct: 364 TPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPD 423
Query: 185 PELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREE 240
P + + L + NS++NP IYA R+FR+ F++I+ +H++R++
Sbjct: 424 CSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIR------SHVLRQQ 473
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 149 AKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNP 208
++E+K + T+ I+ AF + W P+ V+ LI F + IP+++ + WL Y NS +NP
Sbjct: 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCA--PCIPNTVWTIGYWLCYINSTINP 438
Query: 209 VIYATLNRDFRKPFQQIL 226
YA N F+K F+ +L
Sbjct: 439 ACYALCNATFKKTFKHLL 456
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 137 LQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFF 196
+Q+ ++ R L KE A+ +L II+ F +CWLP ++ F P +
Sbjct: 335 IQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLA 394
Query: 197 LWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREE 240
+ L + NS++NP IYA R+FR+ F++I+ +H++R++
Sbjct: 395 IVLSHTNSVVNPFIYAYRIREFRQTFRKIIR------SHVLRQQ 432
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
++ R L KE A+ +L II+ F +CWLP ++ F P + + L +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 278
Query: 202 ANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREE 240
NS++NP IYA R+FR+ F++I+ +H++R++
Sbjct: 279 TNSVVNPFIYAYRIREFRQTFRKIIR------SHVLRQQ 311
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 6/99 (6%)
Query: 142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
++ R L KE A+ +L II+ F +CWLP ++ F P + + L +
Sbjct: 219 ERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSH 278
Query: 202 ANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREE 240
NS++NP IYA R+FR+ F++I+ +H++R++
Sbjct: 279 TNSVVNPFIYAYRIREFRQTFRKIIR------SHVLRQQ 311
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 168 CWLPFFVLALIRPFLSSPELIPHSIS-SFFLWLGYANSLLNPVIYATLNRDFRKPFQQ 224
CW P + +I+ ++ PE ++S F + LGY NS LNPV+YA L+ +F++ F++
Sbjct: 395 CWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 61/124 (49%), Gaps = 7/124 (5%)
Query: 118 LGIIMTTSPNLRKKMQTNNLQQT-TKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLA 176
LG+ + R++++ Q ++ R L KE A+ + II F +CWLP ++
Sbjct: 194 LGVYLRIFAAARRQLKQMESQPLPGERARSTLQKEVHAAKSAAIIAGLFALCWLPLHIIN 253
Query: 177 LIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHM 236
F P + + L + NS++NP IYA R+FR+ F++I+ +H+
Sbjct: 254 CFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKIIR------SHV 307
Query: 237 MREE 240
+R++
Sbjct: 308 LRQQ 311
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 168 CWLPFFVLALIRPFLSSPELIPHSISSFFLW--LGYANSLLNPVIYATLNRDFRKPFQQI 225
CW P + ++ + P +++ L LGYANS LNPV+YA L+ +F++ F+Q+
Sbjct: 392 CWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQL 451
Query: 226 LYFKCS 231
C
Sbjct: 452 CRTPCG 457
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 6/87 (6%)
Query: 147 QLAKERKASTTLGIIMSAFTVCWLP---FFVLALIRPFLSSPELIPHSISSFFLWLGYAN 203
Q++ +RK + +++ F +CWLP FF+L I P L + I + +WL ++
Sbjct: 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFI-QQVYLAIMWLAMSS 297
Query: 204 SLLNPVIYATLNRDFRKPFQQILYFKC 230
++ NP+IY LN FR F+ F+C
Sbjct: 298 TMYNPIIYCCLNDRFRLGFKHA--FRC 322
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 157 TLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNR 216
T+ I++S F CW P F+L L+ + +FL L NS NP+IY N+
Sbjct: 422 TVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNK 481
Query: 217 DFRKPFQQIL 226
+ R+ F +I+
Sbjct: 482 EMRRAFIRIM 491
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 161 IMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLW------LGYANSLLNPVIYATL 214
++ AF VCWLP+ V L+ ++S + + + L YA+S +NP++Y +
Sbjct: 414 VVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLV 473
Query: 215 NRDFRKPFQQILYFKCSSLNH 235
+ +FR+ F L C H
Sbjct: 474 SANFRQVFLSTLACLCPGWRH 494
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS 184
+PN K++ T T R + R+ + + ++++ F VCW P + L+ L S
Sbjct: 365 TPNRAKRVITTFRTGTWDAYREKDRNLRRITRLVLVVVAVFVVCWTPIHIFILVEA-LGS 423
Query: 185 PELIPHSISSFF--LWLGYANSLLNPVIYATLNRDFRKPFQQILY 227
++SS++ + LGY NS LNP++YA L+ +F++ F+ +
Sbjct: 424 TSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDFCF 468
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 168 CWLPFFVLALIRPFLSSPEL-IPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
CW P V L + P +I F LGY NS LNP++YA L+ +F+ F++
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK-- 406
Query: 227 YFKCSS 232
F C+S
Sbjct: 407 -FCCAS 411
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In I222
Spacegroup
Length = 508
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFL-- 182
+PN K++ T T + ++RKA T I++ AF CWLP+++ I F+
Sbjct: 382 TPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILL 441
Query: 183 ------SSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
E H S L + + LNP++YA L F+ Q L
Sbjct: 442 EIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3ODU|B Chain B, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In
Complex With Small Molecule Antagonist It1t
pdb|3OE8|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|B Chain B, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE8|C Chain C, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 502
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 8/110 (7%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFL-- 182
+PN K++ T T + ++RKA T I++ AF CWLP+++ I F+
Sbjct: 382 TPNRAKRVITTFRTGTWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILL 441
Query: 183 ------SSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
E H S L + + LNP++YA L F+ Q L
Sbjct: 442 EIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 491
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 10/89 (11%)
Query: 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPEL---------IPHSISSFFL 197
+ ++ +A + ++ F +CWLP+ ++ L + + + I ++ + +
Sbjct: 205 HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLADTLMRTQVIQESCERRNNIGRALDATEI 264
Query: 198 WLGYANSLLNPVIYATLNRDFRKPFQQIL 226
LG+ +S LNP+IYA + ++FR F +IL
Sbjct: 265 -LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In
Complex With A Cyclic Peptide Antagonist Cvx15
pdb|3OE9|A Chain A, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
pdb|3OE9|B Chain B, Crystal Structure Of The Chemokine Cxcr4 Receptor In
Complex With A Small Molecule Antagonist It1t In P1
Spacegroup
Length = 499
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 46/110 (41%), Gaps = 8/110 (7%)
Query: 125 SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFL-- 182
+PN K++ T T ++RKA I++ AF CWLP+++ I F+
Sbjct: 379 TPNRAKRVITTFRTGTWDAYSGSGHQKRKALKPTVILILAFFACWLPYYIGISIDSFILL 438
Query: 183 ------SSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
E H S L + + LNP++YA L F+ Q L
Sbjct: 439 EIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKTSAQHAL 488
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 150 KERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLL 206
K K T + IIM AF +CWLP+ +A + P +I +FF +++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 302
Query: 207 NPVIYATLNRDFRK 220
NPVIY +N+ FR
Sbjct: 303 NPVIYIMMNKQFRN 316
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query: 150 KERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLL 206
K K T + IIM AF +CWLP+ +A + P +I +FF +++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFF---AKTSAVY 301
Query: 207 NPVIYATLNRDFRK 220
NPVIY +N+ FR
Sbjct: 302 NPVIYIMMNKQFRN 315
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 33.9 bits (76), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 150 KERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLL 206
K K T + IIM AF +CWLP+ +A P +I +FF +++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFF---AKTSAVY 302
Query: 207 NPVIYATLNRDFRK 220
NPVIY +N+ FR
Sbjct: 303 NPVIYIMMNKQFRN 316
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 150 KERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLL 206
K K T + IIM AF +CWLP+ +A P +I +FF +++
Sbjct: 246 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFF---AKTSAVY 302
Query: 207 NPVIYATLNRDFRK 220
NPVIY +N+ FR
Sbjct: 303 NPVIYIMMNKQFRN 316
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 33.9 bits (76), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 150 KERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLL 206
K K T + IIM AF +CWLP+ +A P +I +FF +++
Sbjct: 245 KAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFF---AKTSAVY 301
Query: 207 NPVIYATLNRDFRK 220
NPVIY +N+ FR
Sbjct: 302 NPVIYIMMNKQFRN 315
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIP--HSISSFFLWLGYANSLLN 207
E++ + + I + AF +CWLP+ +A P +I +FF +++ N
Sbjct: 247 AEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFF---AKTSAVYN 303
Query: 208 PVIYATLNRDFRK 220
PVIY +N+ FR
Sbjct: 304 PVIYIMMNKQFRN 316
>pdb|2Z73|A Chain A, Crystal Structure Of Squid Rhodopsin
pdb|2Z73|B Chain B, Crystal Structure Of Squid Rhodopsin
pdb|3AYM|A Chain A, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYM|B Chain B, Crystal Structure Of The Batho Intermediate Of Squid
Rhodopsin
pdb|3AYN|A Chain A, Crystal Structure Of Squid Isorhodopsin
pdb|3AYN|B Chain B, Crystal Structure Of Squid Isorhodopsin
Length = 448
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 120 IIMTTSPNLRKKMQTNNLQQTTKKLRFQLA---KERKASTTLGIIMSAFTVCWLPFFVLA 176
I+M+ S N K+M + K+LR A E + + +I+S F + W P+ V+A
Sbjct: 223 IVMSVS-NHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVA 281
Query: 177 LIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQ 224
L+ F + P++ + + A+++ NP+IY+ + FR+ Q
Sbjct: 282 LLAQFGPLEWVTPYA-AQLPVMFAKASAIHNPMIYSVSHPKFREAISQ 328
>pdb|2ZIY|A Chain A, Crystal Structure Of Squid Rhodopsin
Length = 372
Score = 32.0 bits (71), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 120 IIMTTSPNLRKKMQTNNLQQTTKKLRFQLA---KERKASTTLGIIMSAFTVCWLPFFVLA 176
I+M+ S N K+M + K+LR A E + + +I+S F + W P+ V+A
Sbjct: 222 IVMSVS-NHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVA 280
Query: 177 LIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQ 224
L+ F + P++ + + A+++ NP+IY+ + FR+ Q
Sbjct: 281 LLAQFGPLEWVTPYA-AQLPVMFAKASAIHNPMIYSVSHPKFREAISQ 327
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 27.7 bits (60), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 191 SISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
++ +F L NS +NP+IYA ++D R F+ +
Sbjct: 1 TVFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,152,356
Number of Sequences: 62578
Number of extensions: 246440
Number of successful extensions: 542
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 47
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)