Query psy10297
Match_columns 270
No_of_seqs 299 out of 1477
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:50:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10297.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10297hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 1.5E-21 3.2E-26 178.4 6.7 128 102-229 206-336 (423)
2 PHA03234 DNA packaging protein 99.8 6.7E-20 1.4E-24 169.0 9.4 104 113-227 205-315 (338)
3 PHA03235 DNA packaging protein 99.8 1.9E-18 4E-23 163.2 10.3 114 104-228 203-323 (409)
4 PHA02834 chemokine receptor-li 99.7 1.5E-18 3.3E-23 158.8 7.2 109 111-230 195-311 (323)
5 KOG4220|consensus 99.7 6.4E-18 1.4E-22 154.8 7.9 86 147-234 408-493 (503)
6 PHA02638 CC chemokine receptor 99.7 2E-17 4.3E-22 156.6 10.2 109 110-229 278-398 (417)
7 PHA03087 G protein-coupled che 99.6 7.6E-15 1.7E-19 134.4 10.0 107 111-227 209-322 (335)
8 PF00001 7tm_1: 7 transmembran 99.5 1.5E-13 3.2E-18 118.0 10.9 110 102-211 145-257 (257)
9 KOG2087|consensus 99.3 4E-15 8.6E-20 134.9 -12.9 202 2-228 100-306 (363)
10 PF10324 7TM_GPCR_Srw: Serpent 98.9 5.7E-09 1.2E-13 95.0 8.6 125 103-228 190-317 (318)
11 PF10320 7TM_GPCR_Srsx: Serpen 98.1 6.1E-06 1.3E-10 73.4 5.6 99 120-226 159-257 (257)
12 PF10323 7TM_GPCR_Srv: Serpent 98.0 8.1E-05 1.8E-09 67.1 10.9 114 112-228 170-283 (283)
13 PF05296 TAS2R: Mammalian tast 97.6 0.00031 6.7E-09 64.0 9.4 111 112-227 187-300 (303)
14 PF10321 7TM_GPCR_Srt: Serpent 97.4 0.00027 5.9E-09 64.7 6.4 99 118-227 208-306 (313)
15 PF05462 Dicty_CAR: Slime mold 96.9 0.0059 1.3E-07 55.7 9.5 70 158-231 204-273 (303)
16 PF02101 Ocular_alb: Ocular al 96.9 0.0032 7E-08 58.4 7.2 76 106-181 190-269 (405)
17 PF10328 7TM_GPCR_Srx: Serpent 96.8 0.0056 1.2E-07 54.6 8.5 101 119-226 171-273 (274)
18 PF11970 Git3_C: G protein-cou 96.6 0.0085 1.8E-07 43.3 6.1 69 148-217 4-73 (76)
19 PF10327 7TM_GPCR_Sri: Serpent 95.9 0.034 7.4E-07 50.7 7.7 111 104-221 192-302 (303)
20 PF10317 7TM_GPCR_Srd: Serpent 95.4 0.087 1.9E-06 47.5 8.5 97 121-224 196-292 (292)
21 PF10318 7TM_GPCR_Srh: Serpent 92.9 0.83 1.8E-05 41.1 9.6 101 121-228 201-302 (302)
22 KOG4564|consensus 92.7 0.26 5.5E-06 47.6 6.0 99 118-227 320-418 (473)
23 PF10326 7TM_GPCR_Str: Serpent 92.5 0.04 8.7E-07 49.8 0.4 104 112-223 203-307 (307)
24 KOG4193|consensus 91.4 1.8 4E-05 43.3 10.6 103 114-227 474-580 (610)
25 PF03402 V1R: Vomeronasal orga 91.0 0.056 1.2E-06 48.4 -0.4 107 112-222 154-263 (265)
26 PF10319 7TM_GPCR_Srj: Serpent 88.4 2.7 5.8E-05 38.5 8.2 72 147-221 237-309 (310)
27 PF02118 Srg: Srg family chemo 75.3 19 0.00041 31.5 8.5 90 122-221 185-274 (275)
28 PF03125 Sre: C. elegans Sre G 72.1 83 0.0018 29.2 12.3 39 190-228 283-321 (365)
29 PF10292 7TM_GPCR_Srab: Serpen 71.1 50 0.0011 30.1 10.4 84 144-227 221-305 (324)
30 KOG2575|consensus 64.7 7.4 0.00016 37.0 3.5 26 151-176 254-279 (510)
31 PF09889 DUF2116: Uncharacteri 55.5 32 0.0007 23.5 4.5 21 150-170 34-54 (59)
32 PF10322 7TM_GPCR_Sru: Serpent 53.3 15 0.00032 33.7 3.4 101 113-220 203-304 (307)
33 PF04789 DUF621: Protein of un 48.1 43 0.00093 30.3 5.3 101 113-225 195-295 (305)
34 PF13853 7tm_4: Olfactory rece 45.8 0.27 5.9E-06 39.7 -8.2 60 110-179 62-121 (144)
35 PF04505 Dispanin: Interferon- 41.0 39 0.00084 24.5 3.4 24 113-136 28-51 (82)
36 KOG3827|consensus 31.1 27 0.00059 32.9 1.5 32 152-183 60-91 (400)
37 PF00375 SDF: Sodium:dicarboxy 29.9 2.8E+02 0.0061 26.0 8.2 104 114-226 137-246 (390)
38 PF04093 MreD: rod shape-deter 28.8 2.9E+02 0.0064 21.8 8.0 94 112-220 66-159 (160)
39 PF03155 Alg6_Alg8: ALG6, ALG8 28.0 70 0.0015 31.2 3.7 26 150-175 219-244 (469)
40 KOG1726|consensus 27.6 1.3E+02 0.0029 26.3 5.0 18 157-174 46-63 (225)
41 TIGR02230 ATPase_gene1 F0F1-AT 26.6 2.9E+02 0.0062 21.0 6.5 58 151-208 35-92 (100)
42 PF06072 Herpes_US9: Alphaherp 26.6 2.2E+02 0.0047 19.5 5.7 28 150-177 27-55 (60)
43 PF05393 Hum_adeno_E3A: Human 25.4 78 0.0017 23.5 2.7 16 155-170 41-56 (94)
44 PF10624 TraS: Plasmid conjuga 24.4 45 0.00098 26.7 1.4 51 160-210 29-80 (164)
45 PF04238 DUF420: Protein of un 23.6 2.9E+02 0.0062 22.0 5.9 35 149-183 32-66 (133)
46 PF11368 DUF3169: Protein of u 22.7 5.1E+02 0.011 22.5 9.4 32 147-178 88-119 (248)
47 PF12725 DUF3810: Protein of u 22.7 99 0.0021 28.4 3.5 22 152-173 58-79 (318)
48 KOG1734|consensus 21.3 4.6E+02 0.01 23.7 7.2 18 164-181 104-121 (328)
49 PRK13735 conjugal transfer mat 21.0 2.5E+02 0.0054 30.0 6.4 28 152-179 322-349 (942)
No 1
>KOG4219|consensus
Probab=99.84 E-value=1.5e-21 Score=178.40 Aligned_cols=128 Identities=17% Similarity=0.305 Sum_probs=109.4
Q ss_pred hHHHHHHHhhhccccchheehhchHHHHHHHHhhccchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q psy10297 102 KKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTK-KLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRP 180 (270)
Q Consensus 102 ~ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~-~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~ 180 (270)
+|.|+....+.+|.+|++||.++|..|.+++|..+..+.++ +..++.+.++|++||+++|++.|.+||+||++..++..
T Consensus 206 ~~~y~~vl~~lqYflPliVl~~~Yt~iav~LW~~~~~gd~~d~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~ 285 (423)
T KOG4219|consen 206 MQGYNYVLLFLQYFLPLIVLGLAYTVIAVTLWGRRIPGDQQDRKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNA 285 (423)
T ss_pred hcceeeeehhHHHHHHHHHHHHHHHHHHHHHHhccCccchhchhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHH
Confidence 47789999999999999999999999999999887543333 34567788999999999999999999999999999886
Q ss_pred hcCCC--CcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhhh
Q psy10297 181 FLSSP--ELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK 229 (270)
Q Consensus 181 ~~~~~--~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~~ 229 (270)
....- ......++....||+..|+|+||+||+++|++||.+|++.|+++
T Consensus 286 ~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~c 336 (423)
T KOG4219|consen 286 TNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRWC 336 (423)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhee
Confidence 54321 23346788899999999999999999999999999999999844
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.81 E-value=6.7e-20 Score=169.02 Aligned_cols=104 Identities=14% Similarity=0.127 Sum_probs=84.6
Q ss_pred ccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC---C-CC--
Q psy10297 113 KASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS---S-PE-- 186 (270)
Q Consensus 113 ~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~---~-~~-- 186 (270)
.+.+|+++|++||.+|.+++++.. .++++|++|++++++++|++||+||+++.++..+.. . ..
T Consensus 205 ~f~iPl~im~~cY~~I~~~L~~~~-----------~~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~ 273 (338)
T PHA03234 205 WGIFPTMIFSFFYVIFCKALHALT-----------EKKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFG 273 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh-----------hhhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchH
Confidence 357999999999999999997631 135689999999999999999999999887654321 1 01
Q ss_pred -cchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 187 -LIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 187 -~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
.....++.++.+|+++|||+||+||++++++||++++++++
T Consensus 274 ~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~ 315 (338)
T PHA03234 274 LAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQ 315 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 11235567888999999999999999999999999998875
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.76 E-value=1.9e-18 Score=163.18 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=89.9
Q ss_pred HHHHHHhhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q psy10297 104 LRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS 183 (270)
Q Consensus 104 i~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~ 183 (270)
+|........+.+|+++|++||.+|++.++++.+ ++++|.++++++++++|++||+||+++.++..+..
T Consensus 203 ~y~i~l~i~~f~iPl~im~~~Y~~I~~~l~~~~~-----------~~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~ 271 (409)
T PHA03235 203 TFKVLLTLVWGIAPVVMMTWFYTFFYRTLKRASY-----------KKRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYAT 271 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------hcchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444556899999999999999999987531 23467888999999999999999999988765432
Q ss_pred C----C---CcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 184 S----P---ELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 184 ~----~---~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
. . ......+..+..+|+++|||+||+||++++++||+++++.++.
T Consensus 272 ~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 272 LIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred hcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 1 1 1123456778889999999999999999999999999999863
No 4
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.75 E-value=1.5e-18 Score=158.78 Aligned_cols=109 Identities=15% Similarity=0.263 Sum_probs=87.1
Q ss_pred hhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC----
Q psy10297 111 ERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPE---- 186 (270)
Q Consensus 111 ~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~---- 186 (270)
...+.+|+++|++||.+|++.++++.+ +.++|++|++++++++|++||+||+++.++..+.....
T Consensus 195 i~~f~iPl~ii~~~Y~~I~~~l~~~~~-----------~~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~ 263 (323)
T PHA02834 195 IFGIVIPLIILIYCYSKILYTLKNCKN-----------KNKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIG 263 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccC-----------cccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence 456889999999999999999987532 23468899999999999999999999988766542110
Q ss_pred -c-c--hHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhhhc
Q psy10297 187 -L-I--PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKC 230 (270)
Q Consensus 187 -~-~--~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~~c 230 (270)
. . ......+..+++++||++||+||++++++||+++++++++.+
T Consensus 264 ~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~~~~~~~~~~ 311 (323)
T PHA02834 264 CYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKVFKNMFCRTN 311 (323)
T ss_pred chHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHHHHHHHHhhh
Confidence 0 1 112346788999999999999999999999999999985433
No 5
>KOG4220|consensus
Probab=99.73 E-value=6.4e-18 Score=154.77 Aligned_cols=86 Identities=37% Similarity=0.716 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHh
Q psy10297 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226 (270)
Q Consensus 147 ~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll 226 (270)
...+|+|++|++..|+++|++||+||.|+.++..|+.. .++..+|.+.+||.|.||.+||++|++.|+.||+.|+++|
T Consensus 408 ~~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~--CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL 485 (503)
T KOG4220|consen 408 SLVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKN--CIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLL 485 (503)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhccc--ccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhh
Confidence 34789999999999999999999999999999999986 6888999999999999999999999999999999999999
Q ss_pred hhhcCCCC
Q psy10297 227 YFKCSSLN 234 (270)
Q Consensus 227 ~~~c~~~~ 234 (270)
.|++...+
T Consensus 486 ~Cr~~~~~ 493 (503)
T KOG4220|consen 486 LCRWKKRR 493 (503)
T ss_pred eeeecccc
Confidence 86665544
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.72 E-value=2e-17 Score=156.60 Aligned_cols=109 Identities=17% Similarity=0.226 Sum_probs=87.4
Q ss_pred hhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC-----
Q psy10297 110 KERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSS----- 184 (270)
Q Consensus 110 ~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~----- 184 (270)
....+.+|+++|++||.+|++++++.+. ++++|++|++++++++|++||+||+++.++..+...
T Consensus 278 ~i~~f~lPl~vmi~cY~~I~~~L~~~~~-----------~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~ 346 (417)
T PHA02638 278 NILGMFIPIIIFAFCYIKIILKLKQLKK-----------SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNS 346 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-----------cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhcccc
Confidence 3445789999999999999999976421 235788899999999999999999999988765321
Q ss_pred -----CC--cchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhhh
Q psy10297 185 -----PE--LIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK 229 (270)
Q Consensus 185 -----~~--~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~~ 229 (270)
.. .....+..++.+++++|||+||+||++++++||+++++++++.
T Consensus 347 ~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~~FR~~l~~~~~~~ 398 (417)
T PHA02638 347 IISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGENFRMHLLMIFRNI 398 (417)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCHHHHHHHHHHHHHh
Confidence 00 1123456678899999999999999999999999999998533
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.58 E-value=7.6e-15 Score=134.43 Aligned_cols=107 Identities=21% Similarity=0.237 Sum_probs=85.7
Q ss_pred hhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC---CC-C
Q psy10297 111 ERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS---SP-E 186 (270)
Q Consensus 111 ~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~---~~-~ 186 (270)
...+.+|+++++++|.+|.+.++++.. .++++|++|++++++++|++||+||++..++..+.. .. .
T Consensus 209 ~~~~~lP~~ii~~~y~~i~~~l~~~~~----------~~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~ 278 (335)
T PHA03087 209 IIGMLIPLTILLYCYSKILITLKGINK----------SKKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGC 278 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc----------chhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 345789999999999999999887532 134578999999999999999999999887654321 10 1
Q ss_pred ---cchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 187 ---LIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 187 ---~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
.....+..+..+++++|+++||+||++++++||++++++++
T Consensus 279 ~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~~~~~ 322 (335)
T PHA03087 279 KAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKKKSLK 322 (335)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHHHHHH
Confidence 11234556778899999999999999999999999999985
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.50 E-value=1.5e-13 Score=118.04 Aligned_cols=110 Identities=30% Similarity=0.477 Sum_probs=93.0
Q ss_pred hHHHHHHHhhhccccchheehhchHHHHHHHHhhccchhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10297 102 KKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTT---KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALI 178 (270)
Q Consensus 102 ~ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~---~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll 178 (270)
.+.+........+.+|+++++++|.+|++.++++.+.... +..+.+.++++|+++++++++++|++||+|+.+..++
T Consensus 145 ~~~~~~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~ 224 (257)
T PF00001_consen 145 SQIYFIYFFIVFFILPLIIILICYIRILRKLRRQRKRIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLPYFILSLL 224 (257)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccccCCceeHHHHH
Confidence 3567777778889999999999999999999988764332 3455667889999999999999999999999999999
Q ss_pred HhhcCCCCcchHHHHHHHHHHhhhhhcchHHhh
Q psy10297 179 RPFLSSPELIPHSISSFFLWLGYANSLLNPVIY 211 (270)
Q Consensus 179 ~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY 211 (270)
..+..........+..+..++.++|+++||+||
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 225 SVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 888765322567888999999999999999999
No 9
>KOG2087|consensus
Probab=99.29 E-value=4e-15 Score=134.94 Aligned_cols=202 Identities=11% Similarity=0.055 Sum_probs=139.7
Q ss_pred CCCCCcccccccCCCCCCCceeeeeeCCCCCCCCCcc-----ccchhhhhhhccccCCcccccccCcccccccccccccc
Q psy10297 2 ECSGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSAT-----YQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANN 76 (270)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (270)
+-.||+++|++.+-.||.|||++-.+|.+|.-..... ....++++-++=+.|-.....+--|..+......-+.+
T Consensus 100 tg~gC~~aGflavFASElSv~~LT~itlEr~l~i~~p~~~~~~~~lr~~~~ill~~wl~~~l~A~~Pl~g~s~Y~~~~vC 179 (363)
T KOG2087|consen 100 TGLGCPVAGFLAVFASELSVFLLTLITLERWLSITYPFRLDRKAKLRPLVLILLLGWLFAFLMALLPLFGISSYGASSVC 179 (363)
T ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhheeccccCCCcccccHHHHHHHHHHHHHHHHHhccccCCCCCccccee
Confidence 5579999999999999999999998888877665554 23344444444455544444555666665544433344
Q ss_pred CCCCCcchhHHHhhhhcccccccchhHHHHHHHhhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHH
Q psy10297 77 TAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKAST 156 (270)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k 156 (270)
-|...-+.+ .+.|+.+.-.....+-+++|+++|.+|+..+++......... -++++
T Consensus 180 lPL~~~~~~----------------s~g~y~~~~l~~N~lafiiia~~Y~~iy~~l~~~~~~~~~~~--------~~~ak 235 (363)
T KOG2087|consen 180 LPLHIEEPL----------------STGYYLVALLGLNLLAFIIIAFSYGKIYCSLRKGDLSATLIS--------TSVAK 235 (363)
T ss_pred eecccCCcc----------------chhHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCccccch--------hhhhh
Confidence 333321111 111555666677888999999999999999998755432211 36677
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 157 TLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 157 ~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
-++.++++-++||.|.+++.+...+...- ........+..++.-+|||+||++|+++++.||+.++.++..
T Consensus 236 r~a~LvfTd~icw~Pi~f~~~~al~~~~l-i~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k 306 (363)
T KOG2087|consen 236 RMAFLVFTDCICWCPIAFFKFSALIGVEL-ISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSK 306 (363)
T ss_pred CeeEEEEccccccCchheeeeHHhcCCcc-cChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhh
Confidence 77888999999999999999887665431 111222234445567899999999999999999999998863
No 10
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.89 E-value=5.7e-09 Score=95.03 Aligned_cols=125 Identities=14% Similarity=0.142 Sum_probs=97.1
Q ss_pred HHHHHHHhhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Q psy10297 103 KLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFL 182 (270)
Q Consensus 103 ki~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~ 182 (270)
++|..+.+...-.+|.++..+....+++.+|+.++.+....++. ..++.+.+++++++++.|+++-+|+.+..++..+.
T Consensus 190 ~~~~~~~gi~~kiiP~il~~ilti~Li~~Lrk~~~~r~~~~~~~-~~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~ 268 (318)
T PF10324_consen 190 RIYFFIDGIFFKIIPCILLPILTILLIIELRKAKKRRKKLSSSK-SKKSDRTTKLILFMTISFLISELPQGIIFLLESFF 268 (318)
T ss_pred HHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHhccHhhhcccccc-cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555445778999999998999999988765443222111 45678999999999999999999999999998764
Q ss_pred CCCC---cchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 183 SSPE---LIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 183 ~~~~---~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
.... .....+..+..+|..+|++.|++||++++.+||+.++++++|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~~ 317 (318)
T PF10324_consen 269 EEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKLFGC 317 (318)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhcc
Confidence 3321 223456677788999999999999999999999999999963
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.06 E-value=6.1e-06 Score=73.37 Aligned_cols=99 Identities=12% Similarity=0.135 Sum_probs=75.1
Q ss_pred eehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q psy10297 120 IIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWL 199 (270)
Q Consensus 120 ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~L 199 (270)
++++.|.-.+..++++.+. ....++|+.|.+.++++.|++.|.=..+...+.............+.....++
T Consensus 159 ~tvivY~i~~~~~~~k~~~--------~~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~ 230 (257)
T PF10320_consen 159 ITVIVYIITIIIFKRKSRS--------NSSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIF 230 (257)
T ss_pred HHHHHHHHHHHHHHHHccc--------cchhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 3456677666666655432 22346899999999999999999988887776554444333444566777889
Q ss_pred hhhhhcchHHhhhhcchHHHHHHHHHh
Q psy10297 200 GYANSLLNPVIYATLNRDFRKPFQQIL 226 (270)
Q Consensus 200 a~~NS~iNPiIY~~~~~~FR~~~~~ll 226 (270)
..+|.+.|-++|.++|+|||+++++++
T Consensus 231 v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 231 VNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred HHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 999999999999999999999999874
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.95 E-value=8.1e-05 Score=67.15 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=76.8
Q ss_pred hccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHH
Q psy10297 112 RKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHS 191 (270)
Q Consensus 112 ~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~ 191 (270)
....+-.++.+++|..++..+|++.+ ...+...+..++|.+.+.+.+++++++++...=+ +...+.....+ ......
T Consensus 170 ~~~~~~cv~~iv~Y~~i~~~iRk~~k-~~s~~~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~~-~~~~~~ 246 (283)
T PF10323_consen 170 IFVSVTCVICIVCYGIIFIFIRKRNK-KKSKSSSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNFN-TDPIFY 246 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh-hhhHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc-chHHHH
Confidence 34445566778999999999998764 3333455567788888888877776665544433 33333333322 111222
Q ss_pred HHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 192 ISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 192 ~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
+..+...+.-+.|.+||+.--++|+++|+.+++.++|
T Consensus 247 ~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~~~~~ 283 (283)
T PF10323_consen 247 LRAFYPILNGLLSFINPWMLLIFNKDLRKQVRRMLKC 283 (283)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHHHcCC
Confidence 3235555667889999999999999999999999863
No 13
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.64 E-value=0.00031 Score=64.02 Aligned_cols=111 Identities=12% Similarity=-0.001 Sum_probs=82.4
Q ss_pred hccccchheehhchHHHHHHHHhhccchhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcc
Q psy10297 112 RKASTTLGIIMTTSPNLRKKMQTNNLQQTTK---KLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI 188 (270)
Q Consensus 112 ~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~---~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~ 188 (270)
....+|+++++++...+...++||.++-+.. .+..+.+.+.|++|+++..++.|+++++-..+..+-..+..
T Consensus 187 ~~~~lPf~i~l~s~~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~~----- 261 (303)
T PF05296_consen 187 LGSFLPFLIFLVSSILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYIIYFLSLILSFLSFFFPE----- 261 (303)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----
Confidence 5678999999999999999999886533221 22345677899999998888888777665554333222221
Q ss_pred hHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 189 PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 189 ~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
...+..+...+.++.+..-|+|-.+-|+++|++++++++
T Consensus 262 ~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~ 300 (303)
T PF05296_consen 262 NSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILW 300 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHh
Confidence 134456677778899999999999999999999999985
No 14
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.45 E-value=0.00027 Score=64.68 Aligned_cols=99 Identities=14% Similarity=0.013 Sum_probs=74.1
Q ss_pred hheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q psy10297 118 LGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFL 197 (270)
Q Consensus 118 l~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~ 197 (270)
.+++.++|.-+...++++.+.. ......+.++++....+++.+...+.++=|.++.++ ..+.++..+..
T Consensus 208 ~~~t~~lY~~l~~~l~~k~~~~---~s~~~~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~--------~~p~~~i~~~~ 276 (313)
T PF10321_consen 208 VICTTFLYIYLCYYLIKKSKYS---TSSQLSKAQRQIFIQSVIICFFHAIAAVIYVYMQFF--------PPPPWLIIIGQ 276 (313)
T ss_pred HHHHHHHHHHHHHHHHHhcccc---cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHeeeee--------cccHHHHHHHH
Confidence 4556789999988888775433 223344567788777777777777777666554443 23457777778
Q ss_pred HHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 198 WLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 198 ~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
..-.+++..||+||..+|+..|++++++++
T Consensus 277 ~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~ 306 (313)
T PF10321_consen 277 ISWQLSHGCPPIIYLTLNRTIRNSVLKMLG 306 (313)
T ss_pred HHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence 888899999999999999999999999985
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=96.94 E-value=0.0059 Score=55.71 Aligned_cols=70 Identities=13% Similarity=0.214 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhhhcC
Q psy10297 158 LGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCS 231 (270)
Q Consensus 158 l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~~c~ 231 (270)
+..=.++|++||+|-.|-.+...+... +.++..+-..++-+.-.+|.++|++-++-.++.+...+++.+.
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~----~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~ 273 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKN----PFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFT 273 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhc
Confidence 456788999999999999998877532 3445555556777788999999999999999999888754443
No 16
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=96.88 E-value=0.0032 Score=58.39 Aligned_cols=76 Identities=12% Similarity=0.129 Sum_probs=40.3
Q ss_pred HHHHhhhccccchheehhc----hHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q psy10297 106 FQLAKERKASTTLGIIMTT----SPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPF 181 (270)
Q Consensus 106 ~~l~~~~~~~~Pl~ii~~~----Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~ 181 (270)
+.+.--...-+|++++.+. |.+..+++-..-+.+...-..+.++....+-+-++.|+++|++||+|..|-.++..+
T Consensus 190 ~alphYvttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~ 269 (405)
T PF02101_consen 190 HALPHYVTTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFY 269 (405)
T ss_pred hcchhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHH
Confidence 3344444556677766644 444444443222111111111112222344455678899999999999988775543
No 17
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=96.84 E-value=0.0056 Score=54.64 Aligned_cols=101 Identities=11% Similarity=-0.027 Sum_probs=70.4
Q ss_pred heehhchHHHHHHHHhhccch--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHH
Q psy10297 119 GIIMTTSPNLRKKMQTNNLQQ--TTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFF 196 (270)
Q Consensus 119 ~ii~~~Y~~I~~~lr~~~~~~--~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~ 196 (270)
+++.+++..++.++++.+++. .....++++++|.+..+..++--++|++.|+=|++..-+. . ...+.+...
T Consensus 171 ~~~~~lni~t~ikl~~~~~~~~~~~~~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~----~~~~~F~~~ 243 (274)
T PF10328_consen 171 IISNILNIITFIKLRKFRKKISVSSSESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---S----NRWWQFFCT 243 (274)
T ss_pred HHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c----ccHHHHHHH
Confidence 445567777777776654433 3445666778899999999999999999999888775542 1 122223333
Q ss_pred HHHhhhhhcchHHhhhhcchHHHHHHHHHh
Q psy10297 197 LWLGYANSLLNPVIYATLNRDFRKPFQQIL 226 (270)
Q Consensus 197 ~~La~~NS~iNPiIY~~~~~~FR~~~~~ll 226 (270)
.+.-.+..++|++|+..+|+++|+.+++..
T Consensus 244 t~~w~~~h~~DG~i~l~fN~~~r~~~~~~~ 273 (274)
T PF10328_consen 244 TFSWVLVHALDGLIMLIFNSEIRRKIRKKK 273 (274)
T ss_pred HHHHHHHHHhcceeEeEEcHHHHHHHHhcc
Confidence 332345677899999999999999988753
No 18
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=96.57 E-value=0.0085 Score=43.32 Aligned_cols=69 Identities=12% Similarity=0.179 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchH
Q psy10297 148 LAKERKASTTLGIIMSAFTVCWL-PFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRD 217 (270)
Q Consensus 148 ~~~~~K~~k~l~iivv~F~icwl-Py~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~ 217 (270)
+++-+|.++.+++==++|+++|+ |+.+-.+-...... .....++..+..++..+|..+|-++|++.-+.
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~-~~p~~~l~~i~~~~~~~~G~VD~lvf~~~erp 73 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIG-HGPSFWLFCIAGFMQPSQGFVDCLVFTLRERP 73 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCchHHHHHHHHHHHccCHHHhhheeeeccc
Confidence 34557888899999999999999 98776665542221 23446778888888899999999999987653
No 19
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=95.85 E-value=0.034 Score=50.67 Aligned_cols=111 Identities=15% Similarity=0.168 Sum_probs=81.0
Q ss_pred HHHHHHhhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q psy10297 104 LRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS 183 (270)
Q Consensus 104 i~~~l~~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~ 183 (270)
+...+........=.+++.+++..+++.+++.+.+ -++...++++++++-+++=.++-.+|.+|..+..++..+..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~m~~~L~~~k~~----iS~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~ 267 (303)
T PF10327_consen 192 IFFFILAFFGGFLCFVIFIFLTIDMFRMLKKLKKK----ISKQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEF 267 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecC
Confidence 33444444445555666778888888888765432 23345678899999999999999999999998887655443
Q ss_pred CCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHH
Q psy10297 184 SPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKP 221 (270)
Q Consensus 184 ~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~ 221 (270)
. ....+..+...+..++|.+|-++-.+.++.||+-
T Consensus 268 ~---~~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 268 E---DAQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred C---CcHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 2 3345566666777799999999999999999974
No 20
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=95.37 E-value=0.087 Score=47.54 Aligned_cols=97 Identities=14% Similarity=0.177 Sum_probs=68.4
Q ss_pred ehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHh
Q psy10297 121 IMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLG 200 (270)
Q Consensus 121 i~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La 200 (270)
++++-.+|.+.++++.. +-+.+.++.+++.++.+.+=.+.=+++..|-.+..++..+... .......+...+.
T Consensus 196 ~~~~R~ki~~~L~~~~~----~~S~~tk~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~---~~~~~e~~~~~~~ 268 (292)
T PF10317_consen 196 IFFLRRKILKFLNKKSS----SMSERTKSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGY---EHPFLEYLIFMLA 268 (292)
T ss_pred HHHHHHHHHHHHHhhhh----hcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHH
Confidence 44555566666665321 1222334566888888888888888999988887777766554 2345555666667
Q ss_pred hhhhcchHHhhhhcchHHHHHHHH
Q psy10297 201 YANSLLNPVIYATLNRDFRKPFQQ 224 (270)
Q Consensus 201 ~~NS~iNPiIY~~~~~~FR~~~~~ 224 (270)
.+-+.+||+++.++-+.||+.+++
T Consensus 269 ~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 269 SLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHhchHhheeeeHhHHHHhcC
Confidence 788999999999999999999864
No 21
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=92.94 E-value=0.83 Score=41.08 Aligned_cols=101 Identities=9% Similarity=0.103 Sum_probs=63.9
Q ss_pred ehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHH
Q psy10297 121 IMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSA-FTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWL 199 (270)
Q Consensus 121 i~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~-F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~L 199 (270)
+++....+.+.++++.+ ...+.+..+..+|..+.+.+=+++ +++.-.|..+..+...+... ...+.++...+
T Consensus 201 ~~~f~~~~~~~l~~~~~---~~~S~~T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~~----~q~~~n~~~~~ 273 (302)
T PF10318_consen 201 IIFFAFLIIYYLLKSQK---KTMSKKTRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGYY----NQALNNISFII 273 (302)
T ss_pred HHHHHHHHHHHHHhhch---hhhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc----ccccchHHHHH
Confidence 33333444455555433 112223344456666666554444 45556688777765544322 24555677777
Q ss_pred hhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 200 GYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 200 a~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
.-.+..+.-++..+.++.+|+.+.++++|
T Consensus 274 ~~~HG~~sti~mi~~~~pYR~~~~~~~~~ 302 (302)
T PF10318_consen 274 ISLHGIASTIVMILVHKPYRKFLLSLFRC 302 (302)
T ss_pred HHhccHHHHHHHhhccHHHHHHHHHHhcC
Confidence 78899999999999999999999999963
No 22
>KOG4564|consensus
Probab=92.67 E-value=0.26 Score=47.57 Aligned_cols=99 Identities=14% Similarity=0.207 Sum_probs=60.3
Q ss_pred hheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHH
Q psy10297 118 LGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFL 197 (270)
Q Consensus 118 l~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~ 197 (270)
++|-+++.++|++.|-++-+...... ....+|++|-.++++=+|-|-++. ..+.++..........+-.
T Consensus 320 i~vNf~flinIvrILv~KLr~~~~~~----~~~y~K~vKaTLvLIPLfGI~~il-------f~~~P~~~~~~~v~~~~~~ 388 (473)
T KOG4564|consen 320 ILVNFIFLINIVRILVTKLRASNASE----TDQYRKLVKATLVLIPLFGIHYIL-------FAFRPDEDTLREVYLYFEL 388 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccccc----hHHHHHHHHHHHHHHHHcCCeeEE-------EEecCchHHHHHHHHHHHH
Confidence 44555677888887765533221111 122677888777777776655332 2233331111223334445
Q ss_pred HHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 198 WLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 198 ~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
+|..+.-.+=-+||+|.|.+.|.++++.+.
T Consensus 389 ~L~SfQGf~VAvlYCFlN~EVq~elrr~W~ 418 (473)
T KOG4564|consen 389 FLGSFQGFFVAVLYCFLNGEVQAELRRKWS 418 (473)
T ss_pred HHHhccchheehheeecCHHHHHHHHHHHH
Confidence 566677777889999999999999999885
No 23
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=92.54 E-value=0.04 Score=49.83 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=70.5
Q ss_pred hccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhhcCCCCcchH
Q psy10297 112 RKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGI-IMSAFTVCWLPFFVLALIRPFLSSPELIPH 190 (270)
Q Consensus 112 ~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~i-ivv~F~icwlPy~I~~ll~~~~~~~~~~~~ 190 (270)
......+.+|++|-.++++++++..... +.+.++-+++..+.+++ .++=+++.++|..++.+.-.+.-+ . .
T Consensus 203 ~im~~s~~iii~cg~~~~~~i~~~~~~~----S~~~~~lq~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~---~-~ 274 (307)
T PF10326_consen 203 IIMSISFFIIIYCGIKIYKKIKKLSSIM----SSKTRKLQKQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID---L-G 274 (307)
T ss_pred hhHHhHHHHHHHHHhhhHHHHhcccccc----ChhhHHHHHHHHHHHHHHhhhhheeeecchhheeeeeccCCC---C-C
Confidence 3456778889999999999996543321 12223344556555553 345567889999988876554432 1 2
Q ss_pred HHHHHHHHHhhhhhcchHHhhhhcchHHHHHHH
Q psy10297 191 SISSFFLWLGYANSLLNPVIYATLNRDFRKPFQ 223 (270)
Q Consensus 191 ~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~ 223 (270)
....+...+..+-+++||++-.+.-++||++++
T Consensus 275 ~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 275 FFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred ccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 334455556678899999999999999999874
No 24
>KOG4193|consensus
Probab=91.45 E-value=1.8 Score=43.29 Aligned_cols=103 Identities=10% Similarity=0.070 Sum_probs=55.0
Q ss_pred cccchheehhchHHHH----HHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcch
Q psy10297 114 ASTTLGIIMTTSPNLR----KKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIP 189 (270)
Q Consensus 114 ~~~Pl~ii~~~Y~~I~----~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~ 189 (270)
+.-|+.+|+.+.+-++ +++.++........ +.....+.++..+.++.++-+.|.=-....+ . ...
T Consensus 474 F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~---~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~-----~---~~~ 542 (610)
T KOG4193|consen 474 FLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIA---SKLENISLIRSALALLFLLGLTWIFGIFSWL-----P---GTS 542 (610)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHhhcccccCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----c---ccc
Confidence 4567777776664443 33333222111111 1111226677777888888888864322221 1 011
Q ss_pred HHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhh
Q psy10297 190 HSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILY 227 (270)
Q Consensus 190 ~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~ 227 (270)
..+.+++.++-.+--.+=-|+|+++.++.|++.++.++
T Consensus 543 ~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 543 VVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred hHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 22333333333333344467889999999999999986
No 25
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=91.02 E-value=0.056 Score=48.38 Aligned_cols=107 Identities=12% Similarity=0.141 Sum_probs=75.3
Q ss_pred hccccchheehhchHHHHHHHHhhccchhhhH---HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcc
Q psy10297 112 RKASTTLGIIMTTSPNLRKKMQTNNLQQTTKK---LRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI 188 (270)
Q Consensus 112 ~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~---~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~ 188 (270)
....+-+.+|++.-+-++..+.||+++-+.-+ ...+...|.|+++++++++..|++.|.--.++.++.....+
T Consensus 154 ~~D~~fvgLM~~aSgyMV~~L~RH~q~VqhIhs~~~s~r~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~---- 229 (265)
T PF03402_consen 154 FRDVLFVGLMIWASGYMVFLLYRHHQQVQHIHSSSLSPRSSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKN---- 229 (265)
T ss_pred hhHHHHHHHHHhhhhhheeeeeecccccccCcCCCCCCCCChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcC----
Confidence 34455667788888888888877765322211 11233578999999999999999999998887655433322
Q ss_pred hHHHHHHHHHHhhhhhcchHHhhhhcchHHHHHH
Q psy10297 189 PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPF 222 (270)
Q Consensus 189 ~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~ 222 (270)
..++..+..+++.+-+.+-|++-...++...+.+
T Consensus 230 ~~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 230 SPWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred CcceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 1244566778888889999999998888776654
No 26
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=88.36 E-value=2.7 Score=38.48 Aligned_cols=72 Identities=15% Similarity=0.058 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchHHhhhhcchHHHHH
Q psy10297 147 QLAKERKASTTLGIIMS-AFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKP 221 (270)
Q Consensus 147 ~~~~~~K~~k~l~iivv-~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~ 221 (270)
..+-+++..|.|.+=++ =.++|+.|-.+......++-+ ...+...+.....-.=+++||+.-.+.-+.||+.
T Consensus 237 T~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~i~---~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 237 TKRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFGID---LGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHcCC---hhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 33445666666654433 357788888877655555432 3345555555544566899999999999999985
No 27
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=75.29 E-value=19 Score=31.53 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=47.5
Q ss_pred hhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhh
Q psy10297 122 MTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201 (270)
Q Consensus 122 ~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~ 201 (270)
++++....+++++.+ .+..+.|++..++.++..+++++.-+...+..+...... .........+..+..=
T Consensus 185 i~~~~~~~~~l~~~~--------~~~~~~er~L~~is~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~f~sD 254 (275)
T PF02118_consen 185 IITNIITYRRLRKLS--------KRIKSVERNLTIISFIISFVQLLIAIWQIINSFAFFFDF--LPISSFLYYLLPFASD 254 (275)
T ss_pred HHHHHHHHHHHHhhh--------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHHH
Confidence 344555555555432 112235677777777666666655554444222111111 1122333333333333
Q ss_pred hhhcchHHhhhhcchHHHHH
Q psy10297 202 ANSLLNPVIYATLNRDFRKP 221 (270)
Q Consensus 202 ~NS~iNPiIY~~~~~~FR~~ 221 (270)
+-+...|++-.+++++.|+.
T Consensus 255 ~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 255 LLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHheECHhhhcc
Confidence 44566799999999999985
No 28
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=72.08 E-value=83 Score=29.24 Aligned_cols=39 Identities=13% Similarity=0.102 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhhhhhcchHHhhhhcchHHHHHHHHHhhh
Q psy10297 190 HSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYF 228 (270)
Q Consensus 190 ~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~ll~~ 228 (270)
..+..+......+++.+=|.+-.+..+..|+.+++.+..
T Consensus 283 ~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~ 321 (365)
T PF03125_consen 283 TILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPK 321 (365)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhh
Confidence 455556666777888877887888899999999998863
No 29
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=71.11 E-value=50 Score=30.13 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcch-HHHHHHHHHHhhhhhcchHHhhhhcchHHHHHH
Q psy10297 144 LRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIP-HSISSFFLWLGYANSLLNPVIYATLNRDFRKPF 222 (270)
Q Consensus 144 ~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~-~~~~~i~~~La~~NS~iNPiIY~~~~~~FR~~~ 222 (270)
.+-+.....|+.+++..++.+..+.-+-+.+..++..+.......+ .....-.....-..+.+=|++.....++.|+..
T Consensus 221 ~RYQl~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~ 300 (324)
T PF10292_consen 221 ERYQLEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKR 300 (324)
T ss_pred hHHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677889999988888887777777776665544333222222 222222223445677888998888888888888
Q ss_pred HHHhh
Q psy10297 223 QQILY 227 (270)
Q Consensus 223 ~~ll~ 227 (270)
++-+.
T Consensus 301 ~~~l~ 305 (324)
T PF10292_consen 301 KKRLE 305 (324)
T ss_pred HHHHH
Confidence 77663
No 30
>KOG2575|consensus
Probab=64.73 E-value=7.4 Score=36.97 Aligned_cols=26 Identities=19% Similarity=0.493 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy10297 151 ERKASTTLGIIMSAFTVCWLPFFVLA 176 (270)
Q Consensus 151 ~~K~~k~l~iivv~F~icwlPy~I~~ 176 (270)
-.++++..++|+++|+++|+|+....
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~~ 279 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLSG 279 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 36788999999999999999997544
No 31
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=55.52 E-value=32 Score=23.49 Aligned_cols=21 Identities=24% Similarity=0.392 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy10297 150 KERKASTTLGIIMSAFTVCWL 170 (270)
Q Consensus 150 ~~~K~~k~l~iivv~F~icwl 170 (270)
+.+|.-.+++.++++|++-|+
T Consensus 34 ~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 34 RMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655553
No 32
>PF10322 7TM_GPCR_Sru: Serpentine type 7TM GPCR chemoreceptor Sru; InterPro: IPR003839 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class u (Sru) from the Srg superfamily [].
Probab=53.35 E-value=15 Score=33.68 Aligned_cols=101 Identities=10% Similarity=0.030 Sum_probs=50.9
Q ss_pred ccccchheehhchHHHHHHHHhhc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHH
Q psy10297 113 KASTTLGIIMTTSPNLRKKMQTNN-LQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHS 191 (270)
Q Consensus 113 ~~~~Pl~ii~~~Y~~I~~~lr~~~-~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~ 191 (270)
....=++++++....+++++|+.+ +....++++...+.|+-.+.+++++++-++. ..++.+...+.. .....
T Consensus 203 ~s~~~~~~iii~N~lm~~Klr~~k~~l~~~~~s~~~~KAE~SLT~Tmi~mliP~i~----n~i~~i~~~~~~---~~~~y 275 (307)
T PF10322_consen 203 FSIFWMISIIILNILMFFKLRKLKSSLSSQRRSKQSRKAERSLTLTMISMLIPYIT----NGIISISFLFFP---SYSSY 275 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcccchhhheeHHHHHHHHHHHHHH----HHHHHHHHhcCc---hHHHH
Confidence 444445666777788889998876 3333334444556677666666666554432 222222222211 11111
Q ss_pred HHHHHHHHhhhhhcchHHhhhhcchHHHH
Q psy10297 192 ISSFFLWLGYANSLLNPVIYATLNRDFRK 220 (270)
Q Consensus 192 ~~~i~~~La~~NS~iNPiIY~~~~~~FR~ 220 (270)
+..+--+..=+-.++=|+++.+.++=||+
T Consensus 276 ~~~iRp~~~D~~~~iv~w~FY~THP~Fkk 304 (307)
T PF10322_consen 276 ILLIRPFGNDCRTCIVPWYFYLTHPIFKK 304 (307)
T ss_pred HHHHhhhhhccceeEEEEEeeecChhhcC
Confidence 11111122223344557777777777765
No 33
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=48.06 E-value=43 Score=30.34 Aligned_cols=101 Identities=12% Similarity=0.047 Sum_probs=57.1
Q ss_pred ccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHH
Q psy10297 113 KASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSI 192 (270)
Q Consensus 113 ~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~ 192 (270)
+.++|++| +..|..|.-++-...+.. ..+.|.+++|..+.+ |++...+-.|+.+-..+.-. ......+
T Consensus 195 Q~~IPi~I-l~iYiAIIiKI~~MKkss-------LnK~Ei~ILKQAifI---FvlFQ~ss~VFl~~qt~~~~-~~tAFlI 262 (305)
T PF04789_consen 195 QFGIPIFI-LVIYIAIIIKIIKMKKSS-------LNKNEITILKQAIFI---FVLFQASSCVFLLCQTFKFN-VATAFLI 262 (305)
T ss_pred HHhHHHHH-HHHHHHHHHHHHHHhhcc-------CCchhHHHHHHHHHH---HHHHHHHHHHHHhheeeeec-chHHHHH
Confidence 56777665 556777665554332211 112356666665544 44445555444333322211 1222344
Q ss_pred HHHHHHHhhhhhcchHHhhhhcchHHHHHHHHH
Q psy10297 193 SSFFLWLGYANSLLNPVIYATLNRDFRKPFQQI 225 (270)
Q Consensus 193 ~~i~~~La~~NS~iNPiIY~~~~~~FR~~~~~l 225 (270)
..+...+-.+..+.-|..+.+.+++.|+-+-.-
T Consensus 263 KR~iNT~ei~agaatP~ffffTs~eirk~~s~k 295 (305)
T PF04789_consen 263 KRIINTMEIFAGAATPCFFFFTSKEIRKLVSSK 295 (305)
T ss_pred HHHHHHHHHHhhccCCeEEEEehHHHHHHHHhh
Confidence 455566666778889999999999988876543
No 34
>PF13853 7tm_4: Olfactory receptor
Probab=45.85 E-value=0.27 Score=39.66 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=45.7
Q ss_pred hhhccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10297 110 KERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIR 179 (270)
Q Consensus 110 ~~~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~ 179 (270)
.......|+++|+++|.+|+..+.|....+ .++|+..+....+.+..+.+.|..+..+..
T Consensus 62 ~~~~~~~~~~~Il~SY~~Il~avlki~S~~----------~r~KAfsTC~sHL~vv~lfy~~~~~~y~~~ 121 (144)
T PF13853_consen 62 AIFILLGPLLLILFSYIRILRAVLKIPSAE----------GRSKAFSTCSSHLTVVSLFYGTVIFMYLSP 121 (144)
T ss_pred cceeEEEEeeccccceeEEEehhhcccccc----------cccccccccccCceEEEEeeeeeEEEEecc
Confidence 344667899999999999999888765432 346888898888888888888876655543
No 35
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=41.02 E-value=39 Score=24.53 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=16.6
Q ss_pred ccccchheehhchHHHHHHHHhhc
Q psy10297 113 KASTTLGIIMTTSPNLRKKMQTNN 136 (270)
Q Consensus 113 ~~~~Pl~ii~~~Y~~I~~~lr~~~ 136 (270)
+-..|+.++.+.|..=.+..+...
T Consensus 28 ~Cc~PlGi~Ai~~s~kv~~~~~~G 51 (82)
T PF04505_consen 28 CCCWPLGIVAIVYSSKVRSRYAAG 51 (82)
T ss_pred HHHhhHHHHHheechhhHHHHHCC
Confidence 334688888888887666665543
No 36
>KOG3827|consensus
Probab=31.08 E-value=27 Score=32.87 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q psy10297 152 RKASTTLGIIMSAFTVCWLPFFVLALIRPFLS 183 (270)
Q Consensus 152 ~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~ 183 (270)
.|--.|+++-.+.|++.|+=|.++.-+.++.+
T Consensus 60 ~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~~h 91 (400)
T KOG3827|consen 60 LKWRWMLLIFSLSFVLSWLFFGVIWWLIAYAH 91 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455777888999999999988876665553
No 37
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=29.93 E-value=2.8e+02 Score=25.95 Aligned_cols=104 Identities=12% Similarity=0.047 Sum_probs=54.4
Q ss_pred cccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC-cchH--
Q psy10297 114 ASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPE-LIPH-- 190 (270)
Q Consensus 114 ~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~-~~~~-- 190 (270)
..+++++..+........+.++. +...+--......+.-++-+++++.|+.++.++........ ....
T Consensus 137 ~~L~ivvfai~~G~al~~~~~~~---------~~~~~~~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l 207 (390)
T PF00375_consen 137 NILGIVVFAILFGVALGRLGEKG---------KPLIDFFESLNEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGAL 207 (390)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTSS---------HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHH
T ss_pred ccchhhhHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHH
Confidence 34455555555555555544332 11122234455566778889999999999998765443211 1111
Q ss_pred HHHHHHHH--HhhhhhcchHHhhhhc-chHHHHHHHHHh
Q psy10297 191 SISSFFLW--LGYANSLLNPVIYATL-NRDFRKPFQQIL 226 (270)
Q Consensus 191 ~~~~i~~~--La~~NS~iNPiIY~~~-~~~FR~~~~~ll 226 (270)
..+.+..+ +...--.+.|++|.+. .++..+.+++++
T Consensus 208 ~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~~ 246 (390)
T PF00375_consen 208 GKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAML 246 (390)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHHH
Confidence 11111222 2222346889999955 457777666665
No 38
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=28.76 E-value=2.9e+02 Score=21.80 Aligned_cols=94 Identities=16% Similarity=0.117 Sum_probs=45.0
Q ss_pred hccccchheehhchHHHHHHHHhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHH
Q psy10297 112 RKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHS 191 (270)
Q Consensus 112 ~~~~~Pl~ii~~~Y~~I~~~lr~~~~~~~~~~~~~~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~ 191 (270)
..++.|+.+-.+.|.-+..-+.+.++ +..+++ ..+.+++.+++..+.-+.+..++..... .....
T Consensus 66 ~~~~~~lG~~al~~~l~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~ 130 (160)
T PF04093_consen 66 IYYGGPLGIYALAYVLIGYLVGKLRK---------RFFKDN---SFLPVWLVFFLFLLLVFLIYFLFGLTIL---SLLSF 130 (160)
T ss_pred HHCCCcchHHHHHHHHHHHHHHHHHH---------HHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence 34566777777777766665543311 111222 2223333333333334444333332111 01112
Q ss_pred HHHHHHHHhhhhhcchHHhhhhcchHHHH
Q psy10297 192 ISSFFLWLGYANSLLNPVIYATLNRDFRK 220 (270)
Q Consensus 192 ~~~i~~~La~~NS~iNPiIY~~~~~~FR~ 220 (270)
+.....+-...|..++.++|.+..+=+|+
T Consensus 131 ~~~~~~p~~~~~~~~~~il~~~~~~l~~k 159 (160)
T PF04093_consen 131 LIFRLLPTLLLNALIAIILYPPVFKLLRK 159 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22222233457888888888887766654
No 39
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=28.02 E-value=70 Score=31.15 Aligned_cols=26 Identities=12% Similarity=0.286 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy10297 150 KERKASTTLGIIMSAFTVCWLPFFVL 175 (270)
Q Consensus 150 ~~~K~~k~l~iivv~F~icwlPy~I~ 175 (270)
.-+|..+.-++|+++|.++|.|+...
T Consensus 219 ~~~~~~~lg~~Vi~~f~~~~~PF~~~ 244 (469)
T PF03155_consen 219 SIKRLIKLGIVVIATFALSFGPFLYS 244 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34788999999999999999999744
No 40
>KOG1726|consensus
Probab=27.56 E-value=1.3e+02 Score=26.28 Aligned_cols=18 Identities=28% Similarity=0.783 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhhHHHH
Q psy10297 157 TLGIIMSAFTVCWLPFFV 174 (270)
Q Consensus 157 ~l~iivv~F~icwlPy~I 174 (270)
+.+=.+.-|+++|+|++-
T Consensus 46 t~~e~~~d~~lsw~P~Y~ 63 (225)
T KOG1726|consen 46 TVFETLTDFLLSWFPFYS 63 (225)
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 334455667889999874
No 41
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=26.58 E-value=2.9e+02 Score=20.96 Aligned_cols=58 Identities=19% Similarity=0.119 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHhhhhhcchH
Q psy10297 151 ERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNP 208 (270)
Q Consensus 151 ~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~~~~~~~~~~~~i~~~La~~NS~iNP 208 (270)
++.+.+.+..+-.+=+-.-+|..+..++-.+.+........+..+..+++..-.|.|-
T Consensus 35 ~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~ 92 (100)
T TIGR02230 35 TRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNA 92 (100)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4445555554444444445566666665544433222223455556667777777775
No 42
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=26.57 E-value=2.2e+02 Score=19.52 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhHHHHHHH
Q psy10297 150 KERKASTTLGIIMSAF-TVCWLPFFVLAL 177 (270)
Q Consensus 150 ~~~K~~k~l~iivv~F-~icwlPy~I~~l 177 (270)
+++|...+.+.++++| ++|-+-..+-.+
T Consensus 27 ~RrRrc~~~v~~v~~~~~~c~~S~~lG~~ 55 (60)
T PF06072_consen 27 RRRRRCRLAVAIVFAVVALCVLSGGLGAL 55 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555445555555 667665554444
No 43
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.37 E-value=78 Score=23.46 Aligned_cols=16 Identities=13% Similarity=0.278 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHhh
Q psy10297 155 STTLGIIMSAFTVCWL 170 (270)
Q Consensus 155 ~k~l~iivv~F~icwl 170 (270)
.-+++++++.+++||.
T Consensus 41 ~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 41 CGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455677777777776
No 44
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=24.35 E-value=45 Score=26.73 Aligned_cols=51 Identities=22% Similarity=0.259 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCCC-CcchHHHHHHHHHHhhhhhcchHHh
Q psy10297 160 IIMSAFTVCWLPFFVLALIRPFLSSP-ELIPHSISSFFLWLGYANSLLNPVI 210 (270)
Q Consensus 160 iivv~F~icwlPy~I~~ll~~~~~~~-~~~~~~~~~i~~~La~~NS~iNPiI 210 (270)
+.++.|++.|.-.++..+...-.... .+....-..+-..++-+.|.+||++
T Consensus 29 ~fil~f~~lWqglFiwlF~qIrkKr~v~defkfsk~vwyi~mpVcsllsPll 80 (164)
T PF10624_consen 29 IFILLFIVLWQGLFIWLFIQIRKKRNVSDEFKFSKGVWYILMPVCSLLSPLL 80 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcchhccccceEEeeecHHHHHhHHH
Confidence 44567788888888877776533221 1110111112223444566777765
No 45
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=23.59 E-value=2.9e+02 Score=22.01 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q psy10297 149 AKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS 183 (270)
Q Consensus 149 ~~~~K~~k~l~iivv~F~icwlPy~I~~ll~~~~~ 183 (270)
+.+++.-...+....+|++|++=++...-...|.+
T Consensus 32 ~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g 66 (133)
T PF04238_consen 32 KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGG 66 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCC
Confidence 35577777888999999999998776644444443
No 46
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=22.73 E-value=5.1e+02 Score=22.52 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy10297 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALI 178 (270)
Q Consensus 147 ~~~~~~K~~k~l~iivv~F~icwlPy~I~~ll 178 (270)
...-+++.-+.+....+.+.+...+..+..++
T Consensus 88 ~~~~~~~~~r~~~~~~i~~~i~~i~~~~~l~~ 119 (248)
T PF11368_consen 88 NEEYYRKMNRKLEYATIFFNISIIISFLSLFI 119 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777777777776666
No 47
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=22.66 E-value=99 Score=28.41 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhHHH
Q psy10297 152 RKASTTLGIIMSAFTVCWLPFF 173 (270)
Q Consensus 152 ~K~~k~l~iivv~F~icwlPy~ 173 (270)
.+++..+.++.++|.+.|.-.+
T Consensus 58 ~~~~~~~~~~y~~F~~~WGlNY 79 (318)
T PF12725_consen 58 LNILFFLSVLYFLFYLLWGLNY 79 (318)
T ss_pred HHHHHHHHHHHHHHHHHhhhhc
Confidence 5666777777777777776544
No 48
>KOG1734|consensus
Probab=21.28 E-value=4.6e+02 Score=23.75 Aligned_cols=18 Identities=28% Similarity=0.694 Sum_probs=12.7
Q ss_pred HHHHHhhHHHHHHHHHhh
Q psy10297 164 AFTVCWLPFFVLALIRPF 181 (270)
Q Consensus 164 ~F~icwlPy~I~~ll~~~ 181 (270)
-|++||+=|.++..+..+
T Consensus 104 rfl~~WlmF~~~tafi~~ 121 (328)
T KOG1734|consen 104 RFLFCWLMFCGFTAFITL 121 (328)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 367899988877765443
No 49
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=21.05 E-value=2.5e+02 Score=29.97 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy10297 152 RKASTTLGIIMSAFTVCWLPFFVLALIR 179 (270)
Q Consensus 152 ~K~~k~l~iivv~F~icwlPy~I~~ll~ 179 (270)
.+.+.++-.++.++++|-+|+.++.++.
T Consensus 322 ~~~LP~m~svl~~i~yglFPlV~llall 349 (942)
T PRK13735 322 MRTLPMMQTILMGIAIGIFPLLVLAAVF 349 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777778888888888887776543
Done!