RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10297
(270 letters)
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 84.3 bits (209), Expect = 2e-19
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 128 LRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPF-LSSPE 186
LR + + + + +KERKA+ L +++ F +CWLP+ ++ L+ S
Sbjct: 167 LRTLRKRARSGASQARAKRSSSKERKAAKMLLVVVVVFVLCWLPYHIVLLLDSLCPLSIW 226
Query: 187 LIPHSISSFFLWLGYANSLLNPVIY 211
+ + LWL Y NS LNP+IY
Sbjct: 227 RLLPTALLITLWLAYVNSCLNPIIY 251
>gnl|CDD|217005 pfam02378, PTS_EIIC, Phosphotransferase system, EIIC. The
bacterial phosphoenolpyruvate: sugar phosphotransferase
system (PTS) is a multi-protein system involved in the
regulation of a variety of metabolic and transcriptional
processes. The sugar-specific permease of the PTS
consists of three domains (IIA, IIB and IIC). The IIC
domain catalyzes the transfer of a phosphoryl group from
IIB to the sugar substrate.
Length = 313
Score = 34.2 bits (79), Expect = 0.050
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 155 STTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATL 214
I++ F V+ + + I +++ L L A SLL +I L
Sbjct: 150 GPRFVPIITGFVT----LLVIGPVLGLIWPA--IQGGLNALGLLLILAGSLLGSLIIGFL 203
Query: 215 NR 216
R
Sbjct: 204 ER 205
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 31.7 bits (72), Expect = 0.17
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 70 NNIAANNTAASQFT---LEKKLRKKMQTNNLQQTTKKLRFQLAKERKA 114
NNI A + LE+ L K+ Q +Q + +ER+
Sbjct: 3 NNIRTLRAMARETYLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQE 50
>gnl|CDD|227053 COG4709, COG4709, Predicted membrane protein [Function unknown].
Length = 195
Score = 31.6 bits (72), Expect = 0.24
Identities = 13/53 (24%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 155 STTLGIIMSAFTVCWLPFFVLA--LIRPFLSSPE---LIPHSISSFFLWLGYA 202
+ I+++A T+ + + ++A ++ + E LI SIS+FF+ +G
Sbjct: 105 LFVIAILVAALTLIFSGWALVAAGILGGVILGVESLFLIGSSISAFFIGIGSL 157
>gnl|CDD|187745 cd09223, Photo_RC, D1, D2 subunits of photosystem II (PSII); M, L
subunits of bacterial photosynthetic reaction center.
This protein superfamily contains the D1, D2 subunits of
the photosystem II (PS II) and the M, L subunits of the
bacterial photosynthetic reaction center (RC). These
four proteins are highly homologous and share a common
fold. PS II is a multi-subunit protein found in the
photosynthetic membranes of plants, algae, and
cyanobacteria. It utilizes light-induced electron
transfer and water-splitting reactions to produce
protons, electrons, and molecular oxygen. The protons
generated are instrumental in ATP formation. Bacterial
photosynthetic reaction center (RC) complex is found in
photosynthetic bacteria, such as purple bacteria and
other proteobacteria species. It couples light-induced
electron transfer to proton pumping across the membrane
by reactions of a quinone molecule (QB) that binds two
electrons and two protons at the active site. Protons
are translocated from the bacterial cytoplasm to the
periplasmic space, generating an electrochemical
gradient of protons (the protonmotive force) that can be
used to power reactions such as the synthesis of ATP.
Length = 199
Score = 31.3 bits (71), Expect = 0.35
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 158 LGI---IMSAFTVCWLPFFVLALIRPFL--SSPELIPHSISSFFLWLG-----YANSLLN 207
LG+ I AF+ FFVL LIRP S + P+ ISS W+ + N N
Sbjct: 52 LGMGPHIAVAFSAPIASFFVLFLIRPIGQGSWSDAFPYGISSHLDWVNNFQYEHNNWHYN 111
Query: 208 P 208
P
Sbjct: 112 P 112
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 31.5 bits (71), Expect = 0.39
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 16/88 (18%)
Query: 147 QLAKERKASTT--LGIIMSAFTVCWLPFFVLALIR---PFLSSPELIPHSISSFFLWLGY 201
QL K +K + + II+ +CW+P ++ L F +I I F+ LGY
Sbjct: 302 QLKKSKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICG-FIKLGY 360
Query: 202 ANSL----------LNPVIYATLNRDFR 219
A L +NP+IY + +FR
Sbjct: 361 AMMLAEAISLTHCCINPLIYTLIGENFR 388
>gnl|CDD|215734 pfam00124, Photo_RC, Photosynthetic reaction centre protein.
Length = 257
Score = 31.0 bits (71), Expect = 0.45
Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 7/52 (13%)
Query: 164 AFTVCWLPFFVLALIRPFL--SSPELIPHSISSFFLWLG-----YANSLLNP 208
AF+ + VL LIRP L S E P+ I W Y N NP
Sbjct: 99 AFSAAIFAYLVLGLIRPILMGSWSEAFPYGIFPHLDWTSNFSYRYGNFHYNP 150
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 30.9 bits (70), Expect = 0.63
Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 17/95 (17%)
Query: 150 KERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSIS-----SFFLWLGYA-- 202
K +KA + II+ F + WLPF V F+ S ++ H S + + +
Sbjct: 238 KNKKAIKLVLIIVILFVIFWLPFNVSV----FVYSLHIL-HFKSGCKAVKYIQYALHVTE 292
Query: 203 -----NSLLNPVIYATLNRDFRKPFQQILYFKCSS 232
+ +NP+IYA ++ F K ++ L +S
Sbjct: 293 IISLSHCCINPLIYAFVSEFFNKHKKKSLKLMFTS 327
>gnl|CDD|222963 PHA03041, PHA03041, virion core protein; Provisional.
Length = 153
Score = 29.8 bits (67), Expect = 0.79
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 62 CPMLA-SKANNIAANNTAASQFTLEKKLRK-KMQTNNLQQTTKKL--RFQLAKERKASTT 117
P + K+N++ + S + K+L K +T++LQ + L AK+ TT
Sbjct: 75 NPQCSDVKSNDVPKKIRSISIEEIIKELESIKDETSSLQNESDSLVDDISTAKD----TT 130
Query: 118 LGIIMTTSPNLRKKMQTNNLQQ 139
I +L+KK Q NL
Sbjct: 131 FDAINAIMKDLKKKFQLGNLDG 152
>gnl|CDD|182544 PRK10555, PRK10555, aminoglycoside/multidrug efflux system;
Provisional.
Length = 1037
Score = 30.6 bits (69), Expect = 1.0
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 14/114 (12%)
Query: 61 QCPMLASKANNIAANNTAASQFTLEKKLRKKMQTN-----NLQQTTKKLRFQLAKERKAS 115
Q P LA I AN AS TLE + + ++ N NL + Q + +AS
Sbjct: 34 QYPDLAPPNVRITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSS----QSSGTGQAS 89
Query: 116 TTLGIIMTTSPNLRKKMQTNNLQQTTKKL----RFQLAKERKASTTLGIIMSAF 165
TL T P+ + N LQ +KL + Q RK T I+ AF
Sbjct: 90 VTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDT-NILTIAF 142
>gnl|CDD|223017 PHA03235, PHA03235, DNA packaging protein UL33; Provisional.
Length = 409
Score = 30.2 bits (68), Expect = 1.3
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 205 LLNPVIYATLNRDFRKPFQQ 224
LLNP++YA L DF K F+Q
Sbjct: 300 LLNPILYAFLGNDFLKRFRQ 319
>gnl|CDD|234428 TIGR03979, His_Ser_Rich, His-Xaa-Ser repeat protein HxsA. Members
of this protein share two defining regions. One is a
histidine/serine-rich cluster, typically
H-R-S-H-S-S-H-R-S-H-S-S-H. Members are found always in
the context of a pair of radical SAM proteins, HxsB and
HxsC, and a fourth protein HxsD. The system is predicted
to perform peptide modifications, likely in the
His-Xaa-Ser region, to produce some uncharacterized
natural product.
Length = 186
Score = 29.1 bits (65), Expect = 1.6
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 4 SGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSN 58
SG S V + ++ Y +P +P+ P P ++ Q +T S N
Sbjct: 70 SGAGGSYSVPSGDTSTYSYPVP--SPSYSPSPGSSIQSLPST--TGVRPQSSAEN 120
>gnl|CDD|178211 PLN02601, PLN02601, beta-carotene hydroxylase.
Length = 303
Score = 29.7 bits (66), Expect = 1.7
Identities = 21/98 (21%), Positives = 43/98 (43%), Gaps = 4/98 (4%)
Query: 4 SGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCP 63
+ G ++ V P + ++ + + PPS + GF K L CF + +S P
Sbjct: 2 AAGLSTIAVTLKPLHRSDFRLNHPISLAVFPPSLRFNGFRRRKILTVCFVVEERKQSS-P 60
Query: 64 MLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTT 101
M + + + T++S+ + +L KK + ++ T
Sbjct: 61 M---ENDEKPESTTSSSEILMTSRLLKKAEKKKSERFT 95
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 30.0 bits (68), Expect = 1.7
Identities = 11/71 (15%), Positives = 22/71 (30%)
Query: 83 TLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTK 142
++K L + ++ K L + + L I T + T+ Q
Sbjct: 446 RIKKLLSPSILNDDSLTLIKNLIDTFWINKIHNILLKWISTNYQEFFNIITTDPNDQKIN 505
Query: 143 KLRFQLAKERK 153
K + + K
Sbjct: 506 KKSIGIEEISK 516
>gnl|CDD|188409 TIGR03894, chp_P_marinus_1, conserved hypothetical protein,
TIGR03894 family. This protein family is restricted to
the Prochlorococcus and Synechococcus lineages of the
Cyanobacteria, and is sporadic in those lineages.
Members average 100 amino acids in length, including a
30-residue, highly polar, low complexity region
sandwiched between an N-terminal region of about 60
residues and a C-terminal [KR]VVR[KR]RS motif, both
well-conserved. The function is unknown [Hypothetical
proteins, Conserved].
Length = 95
Score = 27.9 bits (62), Expect = 1.8
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 85 EKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMT 123
+K+L K++ L T KKLR L K +A L ++T
Sbjct: 2 DKELLKEV-ALELWNTVKKLRPGLPKAPRAQLVLKALLT 39
>gnl|CDD|237736 PRK14504, PRK14504, photosynthetic reaction center subunit M;
Provisional.
Length = 315
Score = 29.3 bits (66), Expect = 1.9
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 8/47 (17%)
Query: 169 WLPFFVLALIRPFL--SSPELIPHSISSFFLW-----LGYANSLLNP 208
WL + VL IRP L S E +P I W + Y N NP
Sbjct: 155 WL-YLVLGFIRPILMGSWSEAVPFGIFPHLDWTNNFSIRYGNLYYNP 200
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional.
Length = 323
Score = 29.1 bits (65), Expect = 2.2
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Query: 166 TVCWLPFFVLALIRPFLSSPELIPHSISSF---------FLWLGYANSLLNPVIYATLNR 216
V W+PF ++ I L S LI F + + + +NP+IYA + +
Sbjct: 239 VVFWVPFNIVLFINS-LQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGK 297
Query: 217 DFRKPFQQIL 226
+F+K F+ +
Sbjct: 298 NFKKVFKNMF 307
>gnl|CDD|234493 TIGR04189, surface_SprA, cell surface protein SprA. SprA is a cell
surface protein widely distributed in the Bacteroidetes
lineage. In Flavobacterium johnsoniae, a species that
shows gliding motility, mutation disrupts gliding.
Length = 2315
Score = 29.7 bits (67), Expect = 2.2
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 126 PNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTV 167
L +T QQ +K +++L K+S+ I + A V
Sbjct: 564 QELYDSTKTQA-QQFAEKNKYRLKGRYKSSSGSEIRLGAINV 604
>gnl|CDD|218316 pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain
contains four transmembrane alpha helices. The domain is
characterized by the motifs DLYGP and GY. The Yip1
protein is a golgi protein involved in vesicular
transport that interacts with GTPases.
Length = 171
Score = 28.6 bits (64), Expect = 2.2
Identities = 16/77 (20%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 146 FQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSL 205
+AK + +S LP + LI L S L + L L ++ L
Sbjct: 84 HLIAKLFGGDGSFKQTLSLVGYALLPLILGGLIA-LLLSLLLGALLLLVGLLALIWSLYL 142
Query: 206 LNPVIYATLNRDFRKPF 222
L + A +K
Sbjct: 143 LYLGLKAAHGLSKKKAL 159
>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter.
Length = 210
Score = 28.8 bits (65), Expect = 2.2
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 14/66 (21%)
Query: 154 ASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI-------PHSISSFFLWLGYANSLL 206
A++ LG+ ++A F + I P L P L+ S+ + W+ Y L
Sbjct: 143 AASGLGLFIAALAP---SFEDASQIGPLLLLPLLLLSGFFIPVDSMPGWLQWIYY----L 195
Query: 207 NPVIYA 212
NP+ YA
Sbjct: 196 NPLTYA 201
>gnl|CDD|234898 PRK01100, PRK01100, putative accessory gene regulator protein;
Provisional.
Length = 210
Score = 29.0 bits (65), Expect = 2.4
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 20/86 (23%)
Query: 134 TNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSIS 193
T +L +KLR L ++ + G+I+ T L+ PF LI +
Sbjct: 135 TESLPLIGEKLRKTL---KRKAMIGGLILMGIT----------LLIPFAEMKTLI--MVG 179
Query: 194 SFFLWLGYANSLLNPVIYATLNRDFR 219
S F + +NP+ Y LNR ++
Sbjct: 180 SLFQVIS-----INPITYKLLNRRYK 200
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 29.0 bits (64), Expect = 2.8
Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 44 ATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKK 103
A K+ + +++ P +A + NT + T EKK +T QQT K
Sbjct: 242 AIKQTANTATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKK-----ETTTQQQTAPK 296
Query: 104 LRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTT 141
+ AK A +T N TNN +T
Sbjct: 297 APTEAAKPAPAPST--NTNANKTNTNTNTNTNNTNTST 332
>gnl|CDD|224198 COG1279, COG1279, Lysine efflux permease [General function
prediction only].
Length = 202
Score = 28.4 bits (64), Expect = 3.0
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Query: 144 LRFQLAKERKASTTLGIIMSAFTVCWLPFFVLAL----IRPFLSSP 185
L QL+ E K LG A + +L FF+LAL + P L++P
Sbjct: 136 LAAQLSDEAKWFFALG----AISASFLWFFLLALGARWLSPLLANP 177
>gnl|CDD|182763 PRK10832, PRK10832, phosphatidylglycerophosphate synthetase;
Provisional.
Length = 182
Score = 27.9 bits (62), Expect = 3.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 162 MSAFTVCWLPFFVLALIRPFLSSP 185
++ F V +PFFVL PF +P
Sbjct: 9 LTLFRVILIPFFVLVFYLPFTWAP 32
>gnl|CDD|226717 COG4267, COG4267, Predicted membrane protein [Function unknown].
Length = 467
Score = 28.5 bits (64), Expect = 3.9
Identities = 13/70 (18%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 151 ERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVI 210
E+K L + + L V+ LI F+++ I + I + L++G + + +I
Sbjct: 94 EKKQRKILPSYIGVILLVTLVAGVIGLIVFFVNNQYSIVYKILACALFVGMSLVWIL-MI 152
Query: 211 YATLNRDFRK 220
+ + + ++
Sbjct: 153 FLSGLKKYKL 162
>gnl|CDD|233151 TIGR00852, pts-Glc, PTS system, maltose and glucose-specific
subfamily, IIC component. The PTS Glucose-Glucoside
(Glc) Family (TC 4.A.1) Bacterial PTS transporters
transport and concomitantly phosphorylate their sugar
substrates, and typically consist of multiple subunits
or protein domains. The Glc family includes permeases
specific for glucose, N-acetylglucosamine and a large
variety of a- and b-glucosides. However, not all
b-glucoside PTS permeases are in this class, as the
cellobiose (Cel) b-glucoside PTS permease is in the Lac
family (TC #4.A.3). These permeases show limited
sequence similarity with members of the Fru family (TC
#4.A.2). Several of the E. coli PTS permeases in the Glc
family lack their own IIA domains and instead use the
glucose IIA protein (IIAglc or Crr). Most of these
permeases have the B and C domains linked together in a
single polypeptide chain, and a cysteyl residue in the
IIB domain is phosphorylated by direct phosphoryl
transfer from IIAglc(his~P). Those permeases which lack
a IIA domain include the maltose (Mal),
arbutin-salicin-cellobiose (ASC), trehalose (Tre),
putative glucoside (Glv) and sucrose (Scr) permeases of
E. coli. Most, but not all Scr permeases of other
bacteria also lack a IIA domain. This model is specific
for the IIC domain of the Glc family PTS transporters
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids, Signal transduction, PTS].
Length = 289
Score = 28.1 bits (63), Expect = 4.4
Identities = 26/133 (19%), Positives = 37/133 (27%), Gaps = 27/133 (20%)
Query: 108 LAKERKASTTLGIIMTTSPNLRKKMQTNNLQQT-TKKLRFQLAKERKASTTLGIIMSAFT 166
L I+ P L M Q F++AK I++ A
Sbjct: 20 FGGNPYLGAALAGILV-HPVLNNAM--GVGAQLWGNFFGFEIAKVGYTGVVGPILVGAIA 76
Query: 167 VC--------WLP----FFVLALIRPFLSSPELI-----------PHSISSFFLWLGYAN 203
+ LP FF+ ++ I P IS+ WL A
Sbjct: 77 LALHERFLDKKLPDVLGFFLGPRFVVIIAGFVAILLIGPLGRVWPPVGISALLHWLYSAG 136
Query: 204 SLLNPVIYATLNR 216
L I+ L R
Sbjct: 137 GALGGAIFGFLYR 149
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 28.0 bits (63), Expect = 5.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Query: 86 KKLRK--KMQTNNLQQTTKKLRFQLAKER-KASTTLGII--MTTSPNL 128
K+L++ KM+ + TKK L +E K +LG I M P++
Sbjct: 112 KRLKELEKMEEDGFDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDV 159
>gnl|CDD|191466 pfam06193, Orthopox_A5L, Orthopoxvirus A5L protein-like. This
family includes several Orthopoxvirus A5L proteins. The
vaccinia virus WR A5L open reading frame (corresponding
to open reading frame A4L in vaccinia virus Copenhagen)
encodes an immunodominant late protein found in the core
of the vaccinia virion. The A5 protein appears to be
required for the immature virion to form the
brick-shaped intracellular mature virion.
Length = 162
Score = 27.5 bits (61), Expect = 5.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Query: 91 KMQTNNLQQTTKKL--RFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQ 139
K +T++LQ + L A+E T I +L KK Q+ NLQ+
Sbjct: 116 KDETHSLQAESDDLVTDISDARE----YTFDAINAIMKDLVKKFQSGNLQK 162
>gnl|CDD|237168 PRK12668, PRK12668, putative monovalent cation/H+ antiporter
subunit D; Reviewed.
Length = 581
Score = 28.3 bits (64), Expect = 5.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 13/68 (19%)
Query: 153 KASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYA 212
+A+ T + +SAFT V AL R F + LI ++G A ++ V +A
Sbjct: 212 EATVTGSVFLSAFTT---KTAVYALARAFPGTELLI---------YIGAAMAVY-GVFFA 258
Query: 213 TLNRDFRK 220
L D R+
Sbjct: 259 LLENDLRR 266
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 28.1 bits (63), Expect = 5.3
Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 11/89 (12%)
Query: 77 TAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTT-----LGIIMTTSPNLRKK 131
+A S EKK +K + + +++ K+ F L E LG I +S +
Sbjct: 23 SAISSLGGEKKKDEKKKADRSEESGKESEFNLPSEGAGGKLTLSDLLGSIQDSSSLKKSL 82
Query: 132 MQTNNLQQTTKKLRFQLAK------ERKA 154
Q + + + K L LAK ERKA
Sbjct: 83 KQLDKISKKKKTLEAPLAKRQQDRLERKA 111
>gnl|CDD|204444 pfam10319, 7TM_GPCR_Srj, Serpentine type 7TM GPCR chemoreceptor
Srj. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srj is part of the Str
superfamily of chemoreceptors. The srj family is
designated as the out-group based on its location in
preliminary phylogenetic analyses of the entire
superfamily. Chemoperception is one of the central
senses of soil nematodes like C. elegans which are
otherwise 'blind' and 'deaf'.
Length = 310
Score = 27.5 bits (62), Expect = 7.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 86 KKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSP 126
+KL K + + + TKKL+ QL K T + I ++ SP
Sbjct: 224 RKLNK--MSVTMSKKTKKLQKQLLKALIVQTIIPICISFSP 262
>gnl|CDD|129986 TIGR00908, 2A0305, ethanolamine permease. The three genes used as
the seed for this model (from Burkholderia pseudomallei,
Pseudomonas aeruginosa and Clostridium acetobutylicum
are all adjacent to genes for the catabolism of
ethanolamine. Most if not all of the hits to this model
have a similar arrangement of genes. This group is a
member of the Amino Acid-Polyamine-Organocation (APC)
Superfamily [Transport and binding proteins, Amino
acids, peptides and amines].
Length = 442
Score = 27.9 bits (62), Expect = 7.4
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 151 ERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
ER T GI+ L +AL+ F P ++ +++ F + +GY
Sbjct: 378 ERPYRTPGGILTPGVA---LVLACVALVTGFYVDPRVVVGAVAIFVVLIGY 425
>gnl|CDD|233134 TIGR00802, nico, high-affinity nickel-transporter, HoxN/HupN/NixA
family. This family is found in both Gram-negative and
Gram-positive bacteria. The functionally characterized
members of the family catalyze uptake of either Ni2+ or
Co2+ in a proton motive force-dependent process.
Topological analyses with the HoxN Ni2+ transporter of
Ralstonia eutropha (Alcaligenes eutrophus) suggest that
it possesses 8 TMSs with its N- and C-termini in the
cytoplasm [Transport and binding proteins, Cations and
iron carrying compounds].
Length = 280
Score = 27.4 bits (61), Expect = 7.9
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 187 LIPHSISSFFLWLGYANSLLNPVIYATLNRDFRK 220
LI +S+ FL +LLN VI L R FRK
Sbjct: 77 LIGTLVSALFL---LIIALLNLVILRNLLRLFRK 107
>gnl|CDD|185542 PTZ00293, PTZ00293, thymidine kinase; Provisional.
Length = 211
Score = 27.0 bits (60), Expect = 8.4
Identities = 12/19 (63%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 209 VIYATLNRDF-RKPFQQIL 226
VI A L+ F RKPF QIL
Sbjct: 106 VIVAALDGTFQRKPFGQIL 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.130 0.384
Gapped
Lambda K H
0.267 0.0712 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,081,562
Number of extensions: 1182048
Number of successful extensions: 1193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 53
Length of query: 270
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 175
Effective length of database: 6,723,972
Effective search space: 1176695100
Effective search space used: 1176695100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)