RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10297
(270 letters)
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 131 bits (329), Expect = 3e-35
Identities = 35/137 (25%), Positives = 58/137 (42%)
Query: 110 KERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCW 169
E + +PN K++ T T R L KE A+ +L II+ F +CW
Sbjct: 349 DEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCW 408
Query: 170 LPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFK 229
LP ++ F P + + L + NS++NP IYA R+FR+ F++I+
Sbjct: 409 LPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSH 468
Query: 230 CSSLNHMMREEFYHSQY 246
+ +H +
Sbjct: 469 VLRQQEPFKAHHHHHHH 485
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 128 bits (323), Expect = 3e-34
Identities = 57/248 (22%), Positives = 86/248 (34%), Gaps = 11/248 (4%)
Query: 2 ECSGGNTSQIVNTDPSAKPEYSIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQ 61
G+ + +AK E I + + ++ + +
Sbjct: 262 TIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLK 321
Query: 62 CPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGII 121
+ A AA Q LQQ E +
Sbjct: 322 PVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWD-------EAAVNLAKSRW 374
Query: 122 MTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPF 181
+PN K++ T + T KE KA TLGIIM FT+CWLPFF++ ++
Sbjct: 375 YNQTPNRAKRVITTF-RTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI 433
Query: 182 LSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEF 241
LI + W+GY NS NP+IY + DFR FQ++L + SSL
Sbjct: 434 Q--DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYS 490
Query: 242 YHSQYGDP 249
+ G+
Sbjct: 491 SNGNTGEQ 498
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 127 bits (321), Expect = 3e-34
Identities = 41/208 (19%), Positives = 76/208 (36%), Gaps = 3/208 (1%)
Query: 28 TPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKK 87
G K F + + +K + + A + L
Sbjct: 259 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 318
Query: 88 LRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQT-TKKLRF 146
+ + +T T Q + +A+ L + + + +T T
Sbjct: 319 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYP 378
Query: 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLL 206
++E+K + T+ I+ AF + W P+ V+ LI F IP+++ + WL Y NS +
Sbjct: 379 PPSREKKVTRTILAILLAFIITWAPYNVMVLINTF--CAPCIPNTVWTIGYWLCYINSTI 436
Query: 207 NPVIYATLNRDFRKPFQQILYFKCSSLN 234
NP YA N F+K F+ +L ++
Sbjct: 437 NPACYALCNATFKKTFKHLLMCHYKNIG 464
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 125 bits (316), Expect = 3e-33
Identities = 46/142 (32%), Positives = 63/142 (44%), Gaps = 3/142 (2%)
Query: 106 FQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAF 165
FQ AK + NL + Q ++ KE KA TLGIIM F
Sbjct: 372 FQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTLGIIMGTF 431
Query: 166 TVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQI 225
T+CWLPFF++ ++ LI + W+GY NS NP+IY + DFR FQ++
Sbjct: 432 TLCWLPFFIVNIVHVIQ--DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQEL 488
Query: 226 LYFKCSSLNHMMREEFYHSQYG 247
L + SSL + G
Sbjct: 489 LCLRRSSLKAYGNGYSSNGNTG 510
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 124 bits (313), Expect = 4e-33
Identities = 51/213 (23%), Positives = 81/213 (38%), Gaps = 5/213 (2%)
Query: 28 TPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKK 87
G K F + + +K + + A + L
Sbjct: 272 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 331
Query: 88 LRKKMQTNNLQQTTKKLRFQLAKERKASTTL--GIIMTTSPNLRKKMQTNNLQQTTKKLR 145
+ + +T T Q + +A+ L +PN R K + T
Sbjct: 332 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPN-RAKRVITTFRTGTWDAY 390
Query: 146 FQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSL 205
+E+KA+ + I++ AF VCWLPFF+ ++ + + + S WLGY NS
Sbjct: 391 GVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQTCH-VSPELYSATTWLGYVNSA 449
Query: 206 LNPVIYATLNRDFRKPFQQILYFKCSSLNHMMR 238
LNPVIY T N +FRK F +IL L + +
Sbjct: 450 LNPVIYTTFNIEFRKAFLKILSCGR-PLEVLFQ 481
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 124 bits (311), Expect = 6e-33
Identities = 46/205 (22%), Positives = 79/205 (38%), Gaps = 3/205 (1%)
Query: 28 TPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKK 87
G K F + + +K + + A + L
Sbjct: 244 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 303
Query: 88 LRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLR-KKMQTNNLQQTTKKLRF 146
+ + +T T Q + +A+ L + K + T
Sbjct: 304 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYL 363
Query: 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLL 206
+ +ERKA+ LG IM+AF +CW+P+F+ ++ F + F +WLGY NS L
Sbjct: 364 HMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFC--KNCCNEHLHMFTIWLGYINSTL 421
Query: 207 NPVIYATLNRDFRKPFQQILYFKCS 231
NP+IY N +F+K F++IL+ +
Sbjct: 422 NPLIYPLCNENFKKTFKRILHIRSG 446
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 121 bits (305), Expect = 5e-32
Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 3/124 (2%)
Query: 129 RKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI 188
K + +Q+ ++ R L KE A+ +L II+ F +CWLP ++ F
Sbjct: 327 LKTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHA 386
Query: 189 PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGD 248
P + + L + NS++NP IYA R+FR+ F++I+ + H +
Sbjct: 387 PLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQQEPFK---AHHHHHH 443
Query: 249 PTHE 252
H
Sbjct: 444 HHHH 447
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 120 bits (302), Expect = 2e-31
Identities = 38/223 (17%), Positives = 78/223 (34%), Gaps = 3/223 (1%)
Query: 29 PASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKL 88
+ TK + ++ + + +L + ++ A + +
Sbjct: 291 KSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINM 350
Query: 89 RKKMQTNNLQQ---TTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLR 145
+M + + + L+ + E + +PN K++ T T
Sbjct: 351 VFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYA 410
Query: 146 FQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSL 205
+ ++ T+ I++S F CW P F+L L+ + +FL L NS
Sbjct: 411 SRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSG 470
Query: 206 LNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGD 248
NP+IY N++ R+ F +I+ L +H + D
Sbjct: 471 TNPIIYTLTNKEMRRAFIRIMGRPLEVLFQGPHHHHHHHHHHD 513
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 115 bits (291), Expect = 8e-31
Identities = 42/104 (40%), Positives = 64/104 (61%), Gaps = 3/104 (2%)
Query: 129 RKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELI 188
+++++ + K R L +E KA TLGIIM FT+CWLPFF++ ++ F +L+
Sbjct: 205 KEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFN--RDLV 262
Query: 189 PHSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSS 232
P + F WLGYANS +NP+IY + DFRK F+++L F +
Sbjct: 263 PDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRKA 305
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 79.7 bits (197), Expect = 2e-17
Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 147 QLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFL--WLGYANS 204
Q++ +RK + +++ F +CWLPF + L+ L + WL +++
Sbjct: 239 QVSAKRKVVKMMIVVVCTFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSST 298
Query: 205 LLNPVIYATLNRDFRKPFQQILYFKCSS 232
+ NP+IY LN FR F+
Sbjct: 299 MYNPIIYCCLNDRFRLGFKHAFRCCPFI 326
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 77.2 bits (190), Expect = 2e-16
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 7/106 (6%)
Query: 145 RFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIR---PFLSSPELIPHSISSFFLWLGY 201
R + R+ + + ++++ F CW P V L + SS + +I F LGY
Sbjct: 326 REKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETAV--AILRFCTALGY 383
Query: 202 ANSLLNPVIYATLNRDFRKPFQQIL--YFKCSSLNHMMREEFYHSQ 245
NS LNP++YA L+ +F+ F++ L + + +H
Sbjct: 384 VNSCLNPILYAFLDENFKACFRKFCCASALGRPLEVLFQGPHHHHH 429
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 75.8 bits (186), Expect = 7e-16
Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 2/189 (1%)
Query: 49 LKCFPSRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQL 108
K F + + +K + + A + L + + +T T Q
Sbjct: 275 EKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQ 334
Query: 109 AKERKASTTLGIIMTTSPN-LRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTV 167
+ +A+ L + R K + T + R+ + + ++++ F V
Sbjct: 335 KRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYEKDRNLRRITRMVLVVVAVFIV 394
Query: 168 CWLPFFVLALIRPFLSSPELIPHSISSFF-LWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
CW P + +I+ ++ PE ++S F + LGY NS LNPV+YA L+ +F++ F++
Sbjct: 395 CWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFC 454
Query: 227 YFKCSSLNH 235
S++
Sbjct: 455 IPTSSTIEQ 463
Score = 27.7 bits (61), Expect = 5.4
Identities = 3/28 (10%), Positives = 8/28 (28%)
Query: 160 IIMSAFTVCWLPFFVLALIRPFLSSPEL 187
+ ++ + + SP L
Sbjct: 223 GLRLKIYKNTEGYYTIGIGHLLTKSPSL 250
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 68.0 bits (166), Expect = 3e-13
Identities = 22/110 (20%), Positives = 47/110 (42%), Gaps = 5/110 (4%)
Query: 130 KKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIP 189
K++ L++ E + + +I+S F + W P+ V+AL+ F E +
Sbjct: 239 KRLNAKELRKAQAGAN----AEMRLAKISIVIVSQFLLSWSPYAVVALLAQF-GPLEWVT 293
Query: 190 HSISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMRE 239
+ + A+++ NP+IY+ + FR+ Q + + +E
Sbjct: 294 PYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKE 343
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 67.0 bits (164), Expect = 5e-13
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 151 ERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSLLNPVI 210
E++ + + I++ AF +CWLP+ +A F + + +++ NPVI
Sbjct: 248 EKEVTRMVIIMVIAFLICWLPYAGVAFY-IFTHQGSDFGPIFMTIPAFFAKTSAVYNPVI 306
Query: 211 YATLNRDFRKPFQQILYFKCSS 232
Y +N+ FR L +
Sbjct: 307 YIMMNKQFRNCMVTTLCCGKNP 328
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 2e-11
Identities = 57/339 (16%), Positives = 100/339 (29%), Gaps = 143/339 (42%)
Query: 14 TDPSAKP--EY------SIPII-----------------TPASHPP-------------- 34
+PS P +Y S P+I TP
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVT 279
Query: 35 -----PSATYQGF--AATK--RLL--------KCFP-----------SRKSNESQ-CPML 65
+ +++ F + K +L + +P S ++NE PML
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML 339
Query: 66 ASKANNIAANNTAASQFTLEKKLRKKMQTNNLQQTTKKLRFQLAKERKASTTL--G---I 120
+ I + +Q ++ + K TN+ L ++ +L G +
Sbjct: 340 S-----I----SNLTQEQVQDYVNK---TNS----------HLPAGKQVEISLVNGAKNL 377
Query: 121 IMTTSP--------NLRKKMQTNNLQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPF 172
+++ P LRK + L Q+ ++ F ERK F+ +LP
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQS--RIPF---SERKL---------KFSNRFLPV 423
Query: 173 FVLALIRPFLSS-----PELIPHSISSF-FLWLGYANSLLNPVIYATLN-RDFRKPFQQI 225
PF S +LI + + A + PV Y T + D R I
Sbjct: 424 AS-----PFHSHLLVPASDLINKDLVKNNVSF--NAKDIQIPV-YDTFDGSDLRVLSGSI 475
Query: 226 LYFKCSSLNHMMREEFYH---SQYGDPTHEIRSDHEFDP 261
+ + + TH + +F P
Sbjct: 476 S----ERIVDCIIRLPVKWETTTQFKATHIL----DFGP 506
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 58.8 bits (142), Expect = 4e-10
Identities = 28/143 (19%), Positives = 48/143 (33%), Gaps = 20/143 (13%)
Query: 92 MQTNNLQQTTKKLRFQLAKERKASTTLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKE 151
+Q + L + + +I T + Q +
Sbjct: 361 LQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYGSKGHQ------------K 408
Query: 152 RKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFL--------WLGYAN 203
RKA T I++ AF CWLP+++ I F+ + + L + +
Sbjct: 409 RKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFH 468
Query: 204 SLLNPVIYATLNRDFRKPFQQIL 226
LNP++YA L F+ Q L
Sbjct: 469 CCLNPILYAFLGAKFKTSAQHAL 491
Score = 32.6 bits (74), Expect = 0.13
Identities = 14/92 (15%), Positives = 25/92 (27%), Gaps = 9/92 (9%)
Query: 142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
KL + + + ++ + + SP L + S +G
Sbjct: 234 SKLSHSGSNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSL-NAAKSELDKAIGR 292
Query: 202 ANSLLNPVIYAT-----LNRDFRKPFQQILYF 228
N VI N+D + IL
Sbjct: 293 N---TNGVITKDEAEKLFNQDVDAAVRGILRN 321
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.003
Identities = 40/239 (16%), Positives = 72/239 (30%), Gaps = 64/239 (26%)
Query: 43 AATKRLLKCFP---------SRKSNESQCPMLASKANNIAANNTAASQFTLEKKLRKKMQ 93
+ ++ + S E+ ML I N T+ S + KLR
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR---- 226
Query: 94 TNNLQQTTKKLRFQLAKERKAS----------TTLG-------IIMTTSPNLRKKMQTNN 136
+++Q + R +K + I++TT R K T+
Sbjct: 227 IHSIQA--ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQVTDF 280
Query: 137 LQQTTKKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLS-SPELIPHSISSF 195
L T L T P V +L+ +L P+ +P + +
Sbjct: 281 LSAATTT-HISLDHHSMT----------LT----PDEVKSLLLKYLDCRPQDLPREVLT- 324
Query: 196 FLWLGYANSLLNPVIYATLNRDFRKPFQQILYFKCSSLNHMMREEFYHSQYGDPTHEIR 254
N +I ++ RD + + C L ++ E + +P E R
Sbjct: 325 ------TNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTII-ESSLNVL--EPA-EYR 372
Score = 31.7 bits (71), Expect = 0.24
Identities = 40/228 (17%), Positives = 62/228 (27%), Gaps = 86/228 (37%)
Query: 64 MLASKANNIAANNTAASQFTLEKKLRK-------KMQTNNLQQTTKKLRFQLAKERKAST 116
L SK + +F +E+ LR ++T Q + + ++R
Sbjct: 70 TLLSKQEEMVQ------KF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---- 118
Query: 117 TLGIIMTTSPNLRKKMQTNNLQQTTKKLRFQLAKERKAS------------TTLGI---- 160
+ + K + LQ K LR L + R A T + +
Sbjct: 119 -----LYNDNQVFAKYNVSRLQPYLK-LRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 161 -----IMSAFTVCWL-------PFFVLAL-------IRPFLSS----PELIPHSISS--- 194
F + WL P VL + I P +S I I S
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 195 ----FFLWLGYANSLLNPVIYATLNRDFR-----KPFQQILYFKCSSL 233
Y N LL V+ + + F C L
Sbjct: 233 ELRRLLKSKPYENCLL--VL-----LNVQNAKAWNAFN----LSCKIL 269
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 29.3 bits (65), Expect = 0.14
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 191 SISSFFLWLGYANSLLNPVIYATLNRDFRKPFQQIL 226
++ +F L NS +NP+IYA ++D R F+ +
Sbjct: 1 TVFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMF 36
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane
protein; NMR {Synthetic}
Length = 33
Score = 28.9 bits (64), Expect = 0.14
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 153 KASTTLGIIMSAFTVCWLPFFVL 175
+ + TLG++++ +CW P L
Sbjct: 3 RLAKTLGLVLAVLLICWFPVLAL 25
>3bbo_N Ribosomal protein L15; large ribosomal subunit, spinach
chloroplast ribosome, ribonucleoprotein particle,
macromolecular complex; 9.40A {Spinacea oleracea}
Length = 257
Score = 30.6 bits (69), Expect = 0.51
Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 7/76 (9%)
Query: 23 SIPIITPASHPPPSATYQGFAATKRLLKCFPSRKSNESQCPMLASKANNIAANNTAASQF 82
+ +I +S P ++ ++G T C + ++ N AAS +
Sbjct: 3 AASLIPVSSLPSLASPFKGNVKTLVAKPCLCPCLK-------IQRTKLRVSVVNKAASAY 55
Query: 83 TLEKKLRKKMQTNNLQ 98
++ + +NL
Sbjct: 56 NVKSSGENVFRLDNLG 71
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.6
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 10/31 (32%)
Query: 44 ATKRL---LKCF-PSRKSNESQCPMLASKAN 70
A K+L LK + +S P LA KA
Sbjct: 21 ALKKLQASLKLYAD-----DS-APALAIKAT 45
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 29.2 bits (66), Expect = 1.8
Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 142 KKLRFQLAKERKASTTLGIIMSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGY 201
+++ L K S LG++++ T W+ + + + FL +
Sbjct: 746 TPVKWNLPKLWGMSVLLGVVLAVGT--WITVTTMYAQGENGGIVQNFGNMDEVLFLQISL 803
Query: 202 ANSLL 206
+ L
Sbjct: 804 TENWL 808
>2wjn_M Reaction center protein M chain; bacteriochlorophyll,
lipidic-sponge phase, photosynthesis, R center, electron
transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7
NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M*
2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M*
1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M*
6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Length = 324
Score = 28.5 bits (63), Expect = 2.5
Identities = 12/52 (23%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 164 AFTVCWLPFFVLALIRPFL--SSPELIPHSISSFFLW-----LGYANSLLNP 208
F + I P L S E +P I W + Y N P
Sbjct: 148 NFAAAIFFVLCIGCIHPTLVGSWSEGVPFGIWPHIDWLTAFSIRYGNFYYCP 199
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 26.8 bits (59), Expect = 8.5
Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 162 MSAFTVCWLPFFVLALIRPFLSSPELIPHSISSFFLWLGYANSL-LNPVIY 211
+ + V A S L H + F G + PV+
Sbjct: 135 QKSTHPSFYLPAVAANFTSASSLALLGYHDLGYLFFGAGMIAWIIFEPVLL 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.130 0.384
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,801,699
Number of extensions: 201624
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 376
Number of HSP's successfully gapped: 30
Length of query: 270
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 178
Effective length of database: 4,133,061
Effective search space: 735684858
Effective search space used: 735684858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)