BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1030
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MC7|A Chain A, Solution Structure Of Mdvl1 Pdz Domain
Length = 95
Score = 107 bits (266), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/61 (78%), Positives = 54/61 (88%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLRE+V + GPI L VAK WDP P
Sbjct: 34 MKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLTVAKAWDPTP 93
Query: 61 K 61
+
Sbjct: 94 R 94
>pdb|2REY|A Chain A, Crystal Structure Of The Pdz Domain Of Human Dishevelled
2 (Homologous To Drosophila Dsh)
Length = 100
Score = 104 bits (259), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 54/59 (91%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAKCW+ +
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKCWETS 99
>pdb|3FY5|A Chain A, Dishevelled Pdz Domain Homodimer
pdb|3FY5|B Chain B, Dishevelled Pdz Domain Homodimer
Length = 91
Score = 99.0 bits (245), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 50/56 (89%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57
KGGAVA DGRIEPGD +LQVNDINFEN SND+AVRVLR++V KPGPI L VAKCWD
Sbjct: 36 KGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPIVLTVAKCWD 91
>pdb|3CBY|A Chain A, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
pdb|3CBY|B Chain B, The Dvl2 Pdz Domain In Complex With The N1 Inhibitory
Peptide
Length = 108
Score = 95.5 bits (236), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|2KAW|A Chain A, Nmr Structure Of The Mdvl1 Pdz Domain In Complex With
Its Inhibitor
Length = 90
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/54 (81%), Positives = 49/54 (90%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLRE+V + GPI L VAK
Sbjct: 37 MKGGAVAADGRIEPGDMLLQVNDVNFENMSNDDAVRVLREIVSQTGPISLTVAK 90
>pdb|3CC0|A Chain A, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|B Chain B, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
pdb|3CC0|C Chain C, The Dvl2 Pdz Domain In Complex With The N3 Inhibitory
Peptide
Length = 108
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|3CBZ|A Chain A, The Dvl2 Pdz Domain In Complex With The N2 Inhibitory
Peptide
Length = 108
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|3CBX|A Chain A, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
pdb|3CBX|B Chain B, The Dvl2 Pdz Domain In Complex With The C1 Inhibitory
Peptide
Length = 105
Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAKS 95
>pdb|1L6O|A Chain A, Xenopus Dishevelled Pdz Domain
pdb|1L6O|B Chain B, Xenopus Dishevelled Pdz Domain
pdb|1L6O|C Chain C, Xenopus Dishevelled Pdz Domain
Length = 95
Score = 89.4 bits (220), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
KGGAVA DGRIEPGD +LQVNDINFEN SND+AVRVLR++V KPGPI L VAK
Sbjct: 38 KGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPIVLTVAKL 91
>pdb|2F0A|A Chain A, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|B Chain B, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|C Chain C, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
pdb|2F0A|D Chain D, Crystal Structure Of Monomeric Uncomplexed Form Of
Xenopus Dishevelled Pdz Domain
Length = 98
Score = 89.4 bits (220), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 43/54 (79%), Positives = 47/54 (87%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
KGGAVA DGRIEPGD +LQVNDINFEN SND+AVRVLR++V KPGPI L VAK
Sbjct: 38 KGGAVAADGRIEPGDXLLQVNDINFENXSNDDAVRVLRDIVHKPGPIVLTVAKL 91
>pdb|2JRE|A Chain A, C60-1, A Pdz Domain Designed Using Statistical Coupling
Analysis
Length = 108
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 27/37 (72%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
G A ALDGRIEP D IL+V+D+N + M+ + V VLR
Sbjct: 54 GSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR 90
>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad-
Like Protein
Length = 116
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
GA A DGR+ GD IL+VN ++ N S++EA+ LR+ QK ++LVV +
Sbjct: 54 GAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQK---VRLVVYR 101
>pdb|2OPG|A Chain A, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
pdb|2OPG|B Chain B, The Crystal Structure Of The 10th Pdz Domain Of Mpdz
Length = 98
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
GA DGR+ GD IL+VN I+ ++DEA+ VLR Q P ++L + +
Sbjct: 41 GAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR---QTPQRVRLTLYR 88
>pdb|1Q7X|A Chain A, Solution Structure Of The Alternatively Spliced Pdz2
Domain (Pdz2b) Of Ptp-Bas (Hptp1e)
Length = 108
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
GA DGRI GD +L VN ++ E ++ +AV LR Q + L++ K P K
Sbjct: 53 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ---VVHLLLEKGQSPTSK 107
>pdb|2IWN|A Chain A, 3rd Pdz Domain Of Multiple Pdz Domain Protein Mpdz (Casp
Target)
Length = 97
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
K AV DGRI+ GD I+ V+ N + +N +AV VLR Q
Sbjct: 42 KSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ 83
>pdb|2BYG|A Chain A, 2nd Pdz Domain Of Discs Large Homologue 2
Length = 117
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+ GGA DGR++ GD +L VN+ + E ++++EAV +L+
Sbjct: 62 IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK 100
>pdb|4AMH|A Chain A, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
pdb|4AMH|B Chain B, Influence Of Circular Permutation On The Folding Pathway
Of A Pdz Domain
Length = 106
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV-------VQKPGP 47
++GGA DG+++ GD +L VN++ E ++++EAV L+ V KPG
Sbjct: 40 IEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKVAKPGS 93
>pdb|2AWX|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
pdb|2AWX|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378s
Length = 105
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN ++ E ++++EAV L+
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK 79
>pdb|2FE5|A Chain A, The Crystal Structure Of The Second Pdz Domain Of Human
Dlg3
Length = 94
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 7/54 (12%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV-------VQKPGP 47
++GGA DGR++ GD +L VN+ N +++ ++EAV L+ V KPG
Sbjct: 41 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSDMVYLKVAKPGS 94
>pdb|1D5G|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e Complexed With A Peptide
Length = 96
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 58
GA DGRI GD +L VN ++ E ++ +AV LR Q + L++ K P
Sbjct: 44 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ---VVHLLLEKGQSP 95
>pdb|3PDZ|A Chain A, Solution Structure Of The Pdz2 Domain From Human
Phosphatase Hptp1e
pdb|3LNX|A Chain A, Second Pdz Domain From Human Ptp1e
pdb|3LNX|B Chain B, Second Pdz Domain From Human Ptp1e
pdb|3LNX|C Chain C, Second Pdz Domain From Human Ptp1e
pdb|3LNX|D Chain D, Second Pdz Domain From Human Ptp1e
pdb|3LNX|E Chain E, Second Pdz Domain From Human Ptp1e
pdb|3LNX|F Chain F, Second Pdz Domain From Human Ptp1e
pdb|3LNY|A Chain A, Second Pdz Domain From Human Ptp1e In Complex With
Ra-Gef2 Peptide
Length = 96
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 58
GA DGRI GD +L VN ++ E ++ +AV LR Q + L++ K P
Sbjct: 44 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ---VVHLLLEKGQSP 95
>pdb|1B8Q|A Chain A, Solution Structure Of The Extended Neuronal Nitric Oxide
Synthase Pdz Domain Complexed With An Associated
Peptide
Length = 127
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
++GGA G I+ GD+IL VND ++S D A+ VLR + +
Sbjct: 41 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 84
>pdb|2X7Z|A Chain A, Crystal Structure Of The Sap97 Pdz2 I342w C378a Mutant
Protein Domain
Length = 99
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN++ E ++++EAV L+
Sbjct: 46 IEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALK 84
>pdb|2AWU|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
pdb|2AWU|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
Length = 105
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN + E ++++EAV L+
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALK 79
>pdb|4G69|A Chain A, Structure Of The Human Discs Large 1 Pdz2 - Adenomatous
Polyposis Coli Cytoskeletal Polarity Complex
Length = 100
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN++ E ++++EAV L+
Sbjct: 47 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 85
>pdb|1QAV|B Chain B, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 115
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
++GGA G I+ GD+IL VND ++S D A+ VLR + +
Sbjct: 36 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 79
>pdb|2AWW|A Chain A, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
pdb|2AWW|B Chain B, Synapse Associated Protein 97 Pdz2 Domain Variant C378g
With C-Terminal Glur-A Peptide
Length = 105
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN + E ++++EAV L+
Sbjct: 41 VEGGAAHKDGKLQIGDKLLAVNSVGLEEVTHEEAVTALK 79
>pdb|1QAU|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 112
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
++GGA G I+ GD+IL VND ++S D A+ VLR + +
Sbjct: 34 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASE 77
>pdb|2OQS|A Chain A, Structure Of The HdlgSAP97 PDZ2 IN COMPLEX WITH HPV-18
Papillomavirus E6 Peptide
Length = 97
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN++ E ++++EAV L+
Sbjct: 37 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 75
>pdb|2ENO|A Chain A, Solution Structure Of The Pdz Domain From Human
Synaptojanin 2 Binding Protein
Length = 120
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GA ALDGR++ GD IL VN + +N+ + +AV + R
Sbjct: 58 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 93
>pdb|2JIK|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
pdb|2JIK|B Chain B, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 101
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GA ALDGR++ GD IL VN + +N+ + +AV + R
Sbjct: 48 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 83
>pdb|1GM1|A Chain A, Second Pdz Domain (Pdz2) Of Ptp-Bl
Length = 94
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
GA DGRI GD +L VN ++ E ++ +AV LR Q
Sbjct: 43 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ 82
>pdb|2JIN|A Chain A, Crystal Structure Of Pdz Domain Of Synaptojanin-2
Binding Protein
Length = 102
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GA ALDGR++ GD IL VN + +N+ + +AV + R
Sbjct: 50 GAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR 85
>pdb|1VJ6|A Chain A, Pdz2 From Ptp-Bl In Complex With The C-Terminal Ligand
From The Apc Protein
Length = 102
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
GA DGRI GD +L VN ++ E ++ +AV LR Q
Sbjct: 51 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ 90
>pdb|3RL7|B Chain B, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|A Chain A, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|C Chain C, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|D Chain D, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|E Chain E, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
pdb|3RL7|F Chain F, Crytal Structure Of Hdlg1-Pdz1 Complexed With Apc
Length = 107
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 28/40 (70%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ GGA A DGR+ D IL+VN+++ ++++ +AV L+E
Sbjct: 49 ITGGAAAQDGRLRVNDCILRVNEVDVRDVTHSKAVEALKE 88
>pdb|1OZI|A Chain A, The Alternatively Spliced Pdz2 Domain Of Ptp-Bl
Length = 99
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
GA DGRI GD +L VN ++ E ++ +AV LR Q
Sbjct: 48 GAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTGQ 87
>pdb|3RL8|A Chain A, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|B Chain B, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|C Chain C, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|D Chain D, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
pdb|3RL8|E Chain E, Crytal Structure Of Hdlg1-Pdz2 Complexed With Apc
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 28/39 (71%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN++ E ++++EAV L+
Sbjct: 49 IEGGAAHKDGKLQIGDKLLAVNNVCLEEVTHEEAVTALK 87
>pdb|3ZRT|A Chain A, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|B Chain B, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|C Chain C, Crystal Structure Of Human Psd-95 Pdz1-2
pdb|3ZRT|D Chain D, Crystal Structure Of Human Psd-95 Pdz1-2
Length = 199
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 145 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 183
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 52 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 89
>pdb|2I0L|A Chain A, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6.
pdb|2I0L|B Chain B, X-Ray Crystal Structure Of Sap97 Pdz2 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 84
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN + E ++++EAV L+
Sbjct: 36 IEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 74
>pdb|2G2L|A Chain A, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
pdb|2G2L|B Chain B, Crystal Structure Of The Second Pdz Domain Of Sap97 In
Complex With A Glur-A C-Terminal Peptide
Length = 105
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DG+++ GD +L VN + E ++++EAV L+
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVCLEEVTHEEAVTALK 79
>pdb|1QLC|A Chain A, Solution Structure Of The Second Pdz Domain Of
Postsynaptic Density-95
Length = 95
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 41 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 79
>pdb|2WL7|A Chain A, Crystal Structure Of The Psd93 Pdz1 Domain
Length = 102
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL+VN+++ +S+ +AV L+E
Sbjct: 49 GGAAAEDGRLRVNDCILRVNEVDVSEVSHSKAVEALKE 86
>pdb|3GSL|A Chain A, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
pdb|3GSL|B Chain B, Crystal Structure Of Psd-95 Tandem Pdz Domains 1 And 2
Length = 196
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 138 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 176
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 45 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 82
>pdb|2KA9|A Chain A, Solution Structure Of Psd-95 Pdz12 Complexed With Cypin
Peptide
Length = 189
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 135 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 173
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 42 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 79
>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain
pdb|2XKX|B Chain B, Single Particle Analysis Of Psd-95 In Negative Stain
Length = 721
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 192 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALK 230
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 97 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 136
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G + GD IL VN ++ N S+++A L+ Q
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 381
>pdb|2FNE|A Chain A, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|B Chain B, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
pdb|2FNE|C Chain C, The Crystal Structure Of The 13th Pdz Domain Of Mpdz
Length = 117
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GA + DGR++ GD I+ VN + E ++++EAV +L+ + G + L+V
Sbjct: 64 GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILK---RTKGTVTLMV 109
>pdb|2KOM|A Chain A, Solution Structure Of Humar Par-3b Pdz2 (Residues 451-549)
Length = 121
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57
GA DGR++ GD +++VN ++ S +E V +LR + G + L+V + D
Sbjct: 69 GAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRS-TKMEGTVSLLVFRQED 121
>pdb|3B76|A Chain A, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
pdb|3B76|B Chain B, Crystal Structure Of The Third Pdz Domain Of Human
Ligand-of-numb Protein-x (lnx1) In Complex With The
C-terminal Peptide From The Coxsackievirus And
Adenovirus Receptor
Length = 118
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GG ++ DGRI+ GD++L V+ + +S EAV +L+
Sbjct: 63 GGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLK 99
>pdb|2KOJ|A Chain A, Solution Structure Of Mouse Par-3 Pdz2 (Residues
450-558)
Length = 111
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GA DGR++ GD +++VN ++ S +E V +LR + G + L+V
Sbjct: 50 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS-TKMEGTVSLLV 97
>pdb|1ZOK|A Chain A, Pdz1 Domain Of Synapse Associated Protein 97
Length = 93
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ GGA A DGR+ D IL+VN+ + ++++ +AV L+E
Sbjct: 39 ITGGAAAQDGRLRVNDCILRVNEADVRDVTHSKAVEALKE 78
>pdb|2OGP|A Chain A, Solution Structure Of The Second Pdz Domain Of Par-3
Length = 97
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GA DGR++ GD +++VN ++ S +E V +LR + G + L+V
Sbjct: 44 GAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRS-TKMEGTVSLLV 91
>pdb|2EDV|A Chain A, Solution Structure Of The Pdz Domain From Human Ferm And
Pdz Domain Containing 1
Length = 96
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G++ PGD ILQ+N+ E++S + AV +LRE + + V +C P
Sbjct: 46 GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDS---LSITVVRCTSSGPS 94
>pdb|2KOH|A Chain A, Nmr Structure Of Mouse Par3-Pdz3 In Complex With
Ve-Cadherin C-Terminus
Length = 111
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ----KPGPIKLVVAK 54
+ GGA + DGR+ D ++ VN + +N EA+ LR + K G I+L+VA+
Sbjct: 47 INGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 104
>pdb|2K1Z|A Chain A, Solution Structure Of Par-3 Pdz3
pdb|2K20|A Chain A, Solution Structure Of Par-3 Pdz3 In Complex With Pten
Peptide
Length = 104
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ----KPGPIKLVVAK 54
+ GGA + DGR+ D ++ VN + +N EA+ LR + K G I+L+VA+
Sbjct: 44 INGGAASKDGRLRVNDQLIAVNGESLLGKANQEAMETLRRSMSTEGNKRGMIQLIVAR 101
>pdb|2DLU|A Chain A, Solution Structure Of The Second Pdz Domain Of Human Inad-
Like Protein
Length = 111
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 7/64 (10%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKG 62
GG DGR++ GD IL++ N + M++++ +VLR ++++VA+ +P G
Sbjct: 48 GGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNS---VRMLVAR----DPAG 100
Query: 63 YFTI 66
++
Sbjct: 101 DISV 104
>pdb|2I1N|A Chain A, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
pdb|2I1N|B Chain B, Crystal Structure Of The 1st Pdz Domain Of Human Dlg3
Length = 102
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A+DGR+ D +L+VN+++ + + AV L+E
Sbjct: 44 GGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKE 81
>pdb|2KBS|A Chain A, Solution Structure Of Harmonin Pdz2 In Complex With The
Carboxyl Tail Peptide Of Cadherin23
Length = 92
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+K G+++ + +E GD I++VN ++F N+ + EAV VL+
Sbjct: 34 VKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS 73
>pdb|1X5N|A Chain A, Solution Structure Of The Second Pdz Domain Of Harmonin
Protein
Length = 114
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 28/40 (70%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+K G+++ + +E GD I++VN ++F N+ + EAV VL+
Sbjct: 48 VKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKS 87
>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse-
Associated Protein 102
Length = 113
Score = 34.3 bits (77), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
+ GG L G + GD IL VN +N N ++++A L+ Q
Sbjct: 47 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQS 90
>pdb|1RGR|A Chain A, Cyclic Peptides Targeting Pdz Domains Of Psd-95:
Structural Basis For Enhanced Affinity And Enzymatic
Stability
Length = 99
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 41 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 78
>pdb|1KEF|A Chain A, Pdz1 Of Sap90
Length = 93
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 41 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 78
>pdb|1IU0|A Chain A, The First Pdz Domain Of Psd-95
pdb|1IU2|A Chain A, The First Pdz Domain Of Psd-95
Length = 91
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
GGA A DGR+ D IL VN+++ +++ AV L+E
Sbjct: 42 GGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKE 79
>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
pdb|3JXT|B Chain B, Crystal Structure Of The Third Pdz Domain Of Sap-102 In
Complex With A Fluorogenic Peptide-Based Ligand
Length = 104
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
+ GG L G + GD IL VN +N N ++++A L+ Q
Sbjct: 44 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQS 87
>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 98
Score = 33.1 bits (74), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G + GD IL VN ++ N S+++A L+ Q
Sbjct: 38 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 80
>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In
Complex With A C-Terminal Peptide Derived From Cript.
pdb|1BFE|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95
Length = 119
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G + GD IL VN ++ N S+++A L+ Q
Sbjct: 46 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 88
>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|B Chain B, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|C Chain C, Crystal Structure Of The Third Pdz Domain Of Psd-95
pdb|3I4W|D Chain D, Crystal Structure Of The Third Pdz Domain Of Psd-95
Length = 104
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G + GD IL VN ++ N S+++A L+ Q
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 85
>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv
Peptide Ligand
pdb|1TP5|A Chain A, Crystal Structure Of Pdz3 Domain Of Psd-95 Protein
Complexed With A Peptide Ligand Kketwv
pdb|1TQ3|A Chain A, Higher Resolution Crystal Structure Of The Third Pdz
Domain Of Post Synaptic Psd-95 Protein
Length = 119
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G + GD IL VN ++ N S+++A L+ Q
Sbjct: 46 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQ 88
>pdb|2KPK|A Chain A, Magi-1 Pdz1
pdb|2KPL|A Chain A, Magi-1 Pdz1 E6CT
Length = 129
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
G ALDG++E GD+I+ VND ++ + V++ + +
Sbjct: 54 GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 91
>pdb|2OSG|A Chain A, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
pdb|2OSG|B Chain B, Solution Structure And Binding Property Of The Domain-
Swapped Dimer Of Zo2pdz2
Length = 83
Score = 32.7 bits (73), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVAK 54
G DG + GD+IL++N ENMS +A R++++K G ++LVV +
Sbjct: 32 GLATKDGNLHEGDIILKINGTVTENMSLTDA----RKLIEKSRGKLQLVVLR 79
>pdb|3E17|A Chain A, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
pdb|3E17|B Chain B, Crystal Structure Of The Second Pdz Domain From Human
Zona Occludens-2
Length = 88
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVAK 54
G DG + GD+IL++N ENMS +A R++++K G ++LVV +
Sbjct: 32 GLATKDGNLHEGDIILKINGTVTENMSLTDA----RKLIEKSRGKLQLVVLR 79
>pdb|2HE2|A Chain A, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
pdb|2HE2|B Chain B, Crystal Structure Of The 3rd Pdz Domain Of Human Discs
Large Homologue 2, Dlg2
Length = 102
Score = 32.7 bits (73), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+ GG L G ++ GD IL VN I+ S+++A L+ Q
Sbjct: 35 LAGGPADLSGELQRGDQILSVNGIDLRGASHEQAAAALKGAGQ 77
>pdb|2I04|A Chain A, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
pdb|2I04|B Chain B, X-Ray Crystal Structure Of Magi-1 Pdz1 Bound To The C-
Terminal Peptide Of Hpv18 E6
Length = 85
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
G ALDG++E GD+I+ VND ++ + V++ + +
Sbjct: 36 GPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSI 73
>pdb|1UF1|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Kiaa1526 Protein
Length = 128
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G+ A ++ GD IL+VN +F N+ +DEAVR+L+
Sbjct: 56 GSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS 92
>pdb|1UJU|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 111
Score = 32.3 bits (72), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
GA DGR+ G +L+VN + +++ EAV++LR V
Sbjct: 55 GAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV 92
>pdb|1WG6|A Chain A, Solution Structure Of Pdz Domain In Protein Xp_110852
Length = 127
Score = 32.3 bits (72), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK----LVVAKCWDP 58
GGA DGR+ D ++ VN SN EA+ LR + G I+ LV+ + P
Sbjct: 65 GGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRSGP 124
Query: 59 NP 60
+
Sbjct: 125 SS 126
>pdb|3AXA|A Chain A, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
pdb|3AXA|B Chain B, Crystal Structure Of Afadin Pdz Domain In Complex With
The C-Terminal Peptide From Nectin-3
Length = 106
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+KGGA +DGR+ GD +L V+ + +S + A ++
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|1WI2|A Chain A, Solution Structure Of The Pdz Domain From Riken Cdna
2700099c19
Length = 104
Score = 32.0 bits (71), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 22/28 (78%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++ GD +L VND++F+++ + +AV +L+
Sbjct: 59 LQEGDQVLAVNDVDFQDIEHSKAVEILK 86
>pdb|2RCZ|A Chain A, Structure Of The Second Pdz Domain Of Zo-1
pdb|2RCZ|B Chain B, Structure Of The Second Pdz Domain Of Zo-1
Length = 81
Score = 32.0 bits (71), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 35 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 79
>pdb|1XZ9|A Chain A, Structure Of Af-6 Pdz Domain
pdb|2EXG|A Chain A, Making Protein-protein Interactions Drugable: Discovery
Of Low-molecular-weight Ligands For The Af6 Pdz Domain
Length = 101
Score = 32.0 bits (71), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+KGGA +DGR+ GD +L V+ + +S + A ++
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 83
>pdb|2JWE|A Chain A, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
pdb|2JWE|B Chain B, Solution Structure Of The Second Pdz Domain From Human
Zonula Occludens-1: A Dimeric Form With 3d Domain
Swapping
Length = 88
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 34 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 78
>pdb|2AIN|A Chain A, Solution Structure Of The Af-6 Pdz Domain Complexed With
The C-Terminal Peptide From The Bcr Protein
Length = 93
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+KGGA +DGR+ GD +L V+ + +S + A ++
Sbjct: 40 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|3CYY|A Chain A, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
pdb|3CYY|B Chain B, The Crystal Structure Of Zo-1 Pdz2 In Complex With The
Cx43 Peptide
Length = 92
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 37 ARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 81
>pdb|2FN5|A Chain A, Nmr Structure Of The Neurabin Pdz Domain (502-594)
Length = 94
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GGA DGRI+ D I++V+ I+ ++ + A VLR G ++ V+ +
Sbjct: 44 EGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR---NTKGNVRFVIGR 93
>pdb|1T2M|A Chain A, Solution Structure Of The Pdz Domain Of Af-6
Length = 101
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+KGGA +DGR+ GD +L V+ + +S + A ++
Sbjct: 40 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELM 77
>pdb|1WF8|A Chain A, Solution Structure Of The Pdz Domain Of
SpinophilinNEURABINII PROTEIN
Length = 107
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GGA DGRI+ D I++V+ I+ ++ + A VLR G ++ V+ +
Sbjct: 49 EGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR---NTKGNVRFVIGR 98
>pdb|3HVQ|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 170
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GGA DGRI+ D I++V+ I+ ++ + A VLR G ++ V+ +
Sbjct: 120 EGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR---NTKGNVRFVIGR 169
>pdb|1VB7|A Chain A, Solution Structure Of The Pdz Domain Of Pdz And Lim
Domain 2
Length = 94
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
+G A A D + PGD+I+ +N + ENM + EA +R Q P++L + + P+
Sbjct: 40 RGKAEAAD--LRPGDIIVAINGQSAENMLHAEAQSKIR---QSASPLRLQLDRSSGPS 92
>pdb|2DKR|A Chain A, Solution Structure Of The Pdz Domain From Human Lin-7
Homolog B
Length = 93
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GG G ++ GD +L VN ++ E +++AV +L+ G +KLVV
Sbjct: 40 GGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAA---QGSVKLVV 86
>pdb|3TSW|B Chain B, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
Length = 194
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVL 38
+E GD IL+VN+++F N+ +EAV L
Sbjct: 42 LEEGDQILRVNNVDFTNIIREEAVLFL 68
>pdb|2JIL|A Chain A, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
pdb|2JIL|B Chain B, Crystal Structure Of 2nd Pdz Domain Of Glutamate
Receptor Interacting Protein-1 (Grip1)
Length = 97
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
GG +G I+PGD +L V+ I ++ EA+ +L++ Q+
Sbjct: 42 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 83
>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule
Complex With Connexin-45 Peptide
Length = 468
Score = 30.8 bits (68), Expect = 0.21, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41
+E GD IL+VN+++F N+ +EAV L ++
Sbjct: 41 LEEGDQILRVNNVDFTNIIREEAVLFLLDL 70
>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3
pdb|3SHU|B Chain B, Crystal Structure Of Zo-1 Pdz3
Length = 95
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41
+E GD IL+VN+++F N+ +EAV L ++
Sbjct: 44 LEEGDQILRVNNVDFTNIIREEAVLFLLDL 73
>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human
Zo-1 Maguk Protein
Length = 124
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41
+E GD IL+VN+++F N+ +EAV L ++
Sbjct: 69 LEEGDQILRVNNVDFTNIIREEAVLFLLDL 98
>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|C Chain C, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSW|D Chain D, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of
Human Zo-1
pdb|3TSZ|A Chain A, Crystal Structure Of Pdz3-Sh3-Guk Core Module From Human
Zo-1 In Complex With 12mer Peptide From Human Jam-A
Cytoplasmic Tail
Length = 391
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41
+E GD IL+VN+++F N+ +EAV L ++
Sbjct: 49 LEEGDQILRVNNVDFTNIIREEAVLFLLDL 78
>pdb|2EV8|A Chain A, Solution Structure Of The Erythroid P55 Pdz Domain
Length = 97
Score = 30.4 bits (67), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ GG + G + GD IL++N N N S D+ + ++E
Sbjct: 44 LHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
>pdb|2EJY|A Chain A, Solution Structure Of The P55 Pdz T85c Domain Complexed
With The Glycophorin C F127c Peptide
Length = 97
Score = 30.4 bits (67), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ GG + G + GD IL++N N N S D+ + ++E
Sbjct: 44 LHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKE 83
>pdb|2QBW|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++PGD I+Q N +F N+ + +AV +L+
Sbjct: 41 LQPGDKIIQANGYSFINIEHGQAVSLLK 68
>pdb|2PA1|A Chain A, Structure Of The Pdz Domain Of Human Pdlim2 Bound To A
C-Terminal Extension From Human Beta-Tropomyosin
Length = 87
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 50
A D + PGD+I+ +N + E M + EA +R Q P P++L
Sbjct: 39 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIR---QSPSPLRL 79
>pdb|1UM1|A Chain A, Solution Structure Of Rsgi Ruh-007, Pdz Domain In Human
Cdna
Length = 110
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 6 VALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
A DGR+ GD IL+VN + + AV ++R +K ++ +VAK
Sbjct: 49 AAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGGKK---MRFLVAKS 95
>pdb|3PDV|A Chain A, Structure Of The Pdlim2 Pdz Domain In Complex With The
C-Terminal 6- Peptide Extension Of Ns1
Length = 89
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 50
A D + PGD+I+ +N + E M + EA +R Q P P++L
Sbjct: 38 AKDADLRPGDIIVAINGESAEGMLHAEAQSKIR---QSPSPLRL 78
>pdb|2QT5|A Chain A, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
pdb|2QT5|B Chain B, Crystal Structure Of Grip1 Pdz12 In Complex With The Fras1
Peptide
Length = 200
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
GG +G I+PGD +L V+ I ++ EA+ +L++ Q+
Sbjct: 145 GGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQE 186
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK 44
+GG A +++ GD I VN IN +DE + +L+ V ++
Sbjct: 42 QGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGER 84
>pdb|3CH8|A Chain A, The Crystal Structure Of Pdz-Fibronectin Fusion Protein
Length = 195
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++PGD I+Q N +F N+ + +AV +L+
Sbjct: 42 LQPGDKIIQANGYSFINIEHGQAVSLLK 69
>pdb|1P1D|A Chain A, Structural Insights Into The Inter-Domain Chaperoning Of
Tandem Pdz Domains In Glutamate Receptor Interacting
Proteins
Length = 196
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
Query: 1 MKGGAVA-LDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+K G+VA G +E GD +L +++I ++ S ++AV++L++
Sbjct: 142 IKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQ 182
>pdb|2D92|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Inad-Like
Protein
Length = 108
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
G G + PGD ++ VN+ +N S EAV +L+ V PG + L + C P+
Sbjct: 55 GVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV--PPGLVHLGI--CSGPS 106
>pdb|1XTP|A Chain A, Structural Analysis Of Leishmania Major Lmaj004091aaa, A
Sam-dependent Methyltransferase Of The Duf858/pfam05891
Family
Length = 254
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56
++ D L +DI+++ + N+ VRV++E Q+ P L K +
Sbjct: 207 VDKEDSSLTRSDIHYKRLFNESGVRVVKEAFQEEWPTDLFPLKXY 251
>pdb|1UJV|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Magi-2)
Length = 96
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLREV 41
GD+I+++N N +N+S+ E V +L++
Sbjct: 51 GDLIVEINQQNVQNLSHTEVVDILKDC 77
>pdb|1KWA|A Chain A, Human CaskLIN-2 Pdz Domain
pdb|1KWA|B Chain B, Human CaskLIN-2 Pdz Domain
Length = 88
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
M GG + G + GD I ++N I+ N + ++ ++LRE+
Sbjct: 33 MHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM 73
>pdb|2H3L|A Chain A, Crystal Structure Of Erbin Pdz
pdb|2H3L|B Chain B, Crystal Structure Of Erbin Pdz
pdb|1N7T|A Chain A, Erbin Pdz Domain Bound To A Phage-Derived Peptide
Length = 103
Score = 29.3 bits (64), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++PGD I+Q N +F N+ + +AV +L+
Sbjct: 60 LQPGDKIIQANGYSFINIEHGQAVSLLK 87
>pdb|1WH1|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Kiaa1095
Protein
Length = 124
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 6 VALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
A DGRI GD I+Q+N I +N +EAV +L ++ L++A+
Sbjct: 61 AAKDGRIREGDRIIQINGIEVQN--REEAVALL--TSEENKNFSLLIAR 105
>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Kiaa1526 Protein
Length = 101
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
G++A + GD IL+VND + +++ EAV+ L+ G KLV++
Sbjct: 45 GSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK------GSKKLVLS 88
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+KGG DGR+ GD IL VN + N + + +L+
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK 75
>pdb|1WI4|A Chain A, Solution Structure Of The Pdz Domain Of Syntaxin Binding
Protein 4
Length = 109
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
GG DGR++PGD ++ +N + +S +EA ++
Sbjct: 51 GGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSII 86
>pdb|2DJT|A Chain A, Solution Structures Of The Pdz Domain Of Human Unnamed
Protein Product
Length = 104
Score = 28.9 bits (63), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+K G GR+E GD++L +N + + +++ +AV +R
Sbjct: 46 LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR 84
>pdb|1MFG|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
pdb|1MFL|A Chain A, The Structure Of Erbin Pdz Domain Bound To The Carboxy-
Terminal Tail Of The Erbb2 Receptor
Length = 95
Score = 28.9 bits (63), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++PGD I+Q N +F N+ + +AV +L+
Sbjct: 52 LQPGDKIIQANGYSFINIEHGQAVSLLK 79
>pdb|2LOB|A Chain A, Pdz Domain Of Cal (Cystic Fibrosis Transmembrane
Regulator-Associated Ligand)
Length = 112
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 70 GGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 109
>pdb|1UFX|A Chain A, Solution Structure Of The Third Pdz Domain Of Human
Kiaa1526 Protein
Length = 103
Score = 28.5 bits (62), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQ 43
+GG+ G+++ G +IL+VN + + EA R++ E +
Sbjct: 40 QRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFK 82
>pdb|1WHA|A Chain A, Solution Structure Of The Second Pdz Domain Of Human
Scribble (Kiaa0147 Protein)
Length = 105
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+GGA G ++ GD +L +N ++ +D AV +L
Sbjct: 47 EGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLL 83
>pdb|2KV8|A Chain A, Solution Structure Ofrgs12 Pdz Domain
Length = 83
Score = 28.5 bits (62), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GD IL VN+IN + S+++ V+++ + G + +V+A+
Sbjct: 41 LRAGDQILAVNEINVKKASHEDVVKLIGKC---SGVLHMVIAE 80
>pdb|1UEQ|A Chain A, Solution Structure Of The First Pdz Domain Of Human
Atrophin-1 Interacting Protein 1 (Kiaa0705 Protein)
Length = 123
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
G A DG++E GD+I+ +N++ ++ + V++ + V
Sbjct: 55 GPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSV 92
>pdb|3EGG|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+GGA DGRI+ D++++V+ + ++ A VLR
Sbjct: 120 EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLREV 41
GD IL VN + + ++DEAV+ L++
Sbjct: 125 GDAILSVNGEDLSSATHDEAVQALKKT 151
>pdb|3EGH|C Chain C, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|D Chain D, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
Length = 170
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+GGA DGRI+ D++++V+ + ++ A VLR
Sbjct: 120 EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 157
>pdb|4E34|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E34|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36 (Ansrwptsii) Peptide
pdb|4E35|A Chain A, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
pdb|4E35|B Chain B, Crystal Structure Of Cftr Associated Ligand (Cal) Pdz
Domain Bound To Ical36-L (Ansrwptsil) Peptide
Length = 87
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 45 GGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 84
>pdb|2G5M|B Chain B, Spinophilin Pdz Domain
Length = 113
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
+GGA DGRI+ D++++V+ + ++ A VLR
Sbjct: 44 EGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR 81
>pdb|2DC2|A Chain A, Solution Structure Of Pdz Domain
Length = 103
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 52 GGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 91
>pdb|1WIF|A Chain A, The Solution Structure Of Rsgi Ruh-020, A Pdz Domain Of
Hypothetical Protein From Mouse
Length = 126
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
GA A DG ++PGD+++ V N + E +++L+ +
Sbjct: 60 GAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI 97
>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human
Inad- Like Protein
Length = 117
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLR 39
++ GD IL+V+ ++ +N S+ EAV ++
Sbjct: 69 LKTGDKILEVSGVDLQNASHSEAVEAIK 96
>pdb|2DAZ|A Chain A, Solution Structure Of The 7th Pdz Domain Of Inad-Like
Protein
Length = 124
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57
G A DGR+ GD +L++N+ S+ A +++ P +KLV + D
Sbjct: 62 GPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTA---PSKVKLVFIRNED 112
>pdb|1I16|A Chain A, Structure Of Interleukin 16: Implications For Function,
Nmr, 20 Structures
Length = 130
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
KG A ++PGD ILQ+ + ++ EA +++ + GP+ +V+
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL--PDGPVTIVI 114
>pdb|1N7E|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1
pdb|1N7F|A Chain A, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
pdb|1N7F|B Chain B, Crystal Structure Of The Sixth Pdz Domain Of Grip1 In
Complex With Liprin C-Terminal Peptide
Length = 97
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
KGG G I GD IL +N + + EA+ +L+ + + L + K D P
Sbjct: 39 KGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGET---VTLKIKKQTDAQP 94
>pdb|3QE1|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The C-Terminal Residues (Eseskv) Of
Girk3
Length = 107
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GGA G + GD IL+VN +N E ++ + V ++R
Sbjct: 53 GGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLRE 40
GD IL VN + + ++DEAV+ L++
Sbjct: 52 GDAILSVNGEDLSSATHDEAVQALKK 77
>pdb|3QGL|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|B Chain B, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|C Chain C, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|D Chain D, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
pdb|3QGL|E Chain E, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) In Complex With The Eseskv Peptide
Corresponding To The C-Terminal Tail Of Girk3
Length = 101
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GGA G + GD IL+VN +N E ++ + V ++R
Sbjct: 53 GGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|3QDO|A Chain A, Crystal Structure Of Pdz Domain Of Sorting Nexin 27
(Snx27) Fused To The Gly-Gly Linker Followed By
C-Terminal (Eseskv) Of Girk3
Length = 109
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GGA G + GD IL+VN +N E ++ + V ++R
Sbjct: 53 GGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIR 88
>pdb|2VY3|A Chain A, Type Iv Secretion System Effector Protein Bepa
pdb|2VY3|B Chain B, Type Iv Secretion System Effector Protein Bepa
Length = 302
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 7/37 (18%)
Query: 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
AVA +G +EP + FE++SN E +R+L+E
Sbjct: 200 AVAENGDLEPXQHL-------FEDISNPEKIRLLKEF 229
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In
Complex With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLRE 40
GD IL VN + + ++DEAV+ L++
Sbjct: 48 GDAILSVNGEDLSSATHDEAVQALKK 73
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLRE 40
GD IL VN + + ++DEAV+ L++
Sbjct: 48 GDAILSVNGEDLSSATHDEAVQALKK 73
>pdb|2PKU|A Chain A, Solution Structure Of Pick1 Pdz In Complex With The
Carboxyl Tail Peptide Of Glur2
Length = 87
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
ALDG + GD I VN + + + E ++++EV
Sbjct: 42 ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 76
>pdb|2DLS|A Chain A, Solution Structure Of The Pdz Domain Of Human Rho
Guanine Nucleotide Exchange Factor 11
Length = 93
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G A+ ++ GD I++VN N S+ E V++++
Sbjct: 39 GGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIKS 75
>pdb|3HPM|A Chain A, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
pdb|3HPM|B Chain B, Oxidized Dimeric Pick1 Pdz C46g Mutant In Complex With
The C Tail Peptide Of Glur2
Length = 111
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
ALDG + GD I VN + + + E ++++EV
Sbjct: 45 ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 79
>pdb|1N99|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
pdb|1N99|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
Length = 166
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLRE 40
GD +LQ+N N S+D+A +VL++
Sbjct: 48 GDQVLQINGENCAGWSSDKAHKVLKQ 73
>pdb|2GZV|A Chain A, The Cystal Structure Of The Pdz Domain Of Human Pick1
(Casp Target)
Length = 114
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
ALDG + GD I VN + + + E ++++EV
Sbjct: 64 ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 98
>pdb|1X5R|A Chain A, Solution Structure Of The Fourth Pdz Domain Of Glutamate
Receptor Interacting Protein 2
Length = 112
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G ++ GD +L +N I E+ + +EA ++LR+ K+V+ +D P
Sbjct: 62 GLLQVGDRVLSINGIATEDGTMEEANQLLRDAALAH---KVVLEVEFDSGPS 110
>pdb|1OBZ|A Chain A, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1OBZ|B Chain B, Crystal Structure Of The Complex Of The Pdz Tandem Of
Syntenin With An Interleukin 5 Receptor Alpha Peptide.
pdb|1V1T|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1V1T|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneykv Peptide
pdb|1YBO|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1YBO|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin
With Syndecan Peptide
pdb|1W9E|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9E|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefyf Peptide
pdb|1W9O|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9O|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tneyyv Peptide
pdb|1W9Q|A Chain A, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
pdb|1W9Q|B Chain B, Crystal Structure Of The Pdz Tandem Of Human Syntenin In
Complex With Tnefaf Peptide
Length = 166
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 15 GDMILQVNDINFENMSNDEAVRVLRE 40
GD +LQ+N N S+D+A +VL++
Sbjct: 48 GDQVLQINGENCAGWSSDKAHKVLKQ 73
>pdb|1VA8|A Chain A, Solution Structure Of The Pdz Domain Of Pals1 Protein
Length = 113
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
+KGGA G + GD +L++N I +E +L ++
Sbjct: 56 VKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM 96
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 18 ILQVNDINFENMSNDEAVRVLREVVQKPGP------IKLVVAKCWDPNPK 61
I+ I + MSN E +R L + P P + ++ +CW P+
Sbjct: 378 IVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPE 427
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 18 ILQVNDINFENMSNDEAVRVLREVVQKPGP------IKLVVAKCWDPNPK 61
I+ I + MSN E +R L + P P + ++ +CW P+
Sbjct: 362 IVTYGRIPYPGMSNPEVIRALERGYRMPRPENCPEELYNIMMRCWKNRPE 411
>pdb|3HPK|A Chain A, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
pdb|3HPK|B Chain B, Oxidized Dimeric Pick1 Pdz In Complex With The Carboxyl
Tail Of Glur2
Length = 125
Score = 25.4 bits (54), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
ALDG + GD I VN + + + E ++++EV
Sbjct: 59 ALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV 93
>pdb|3O46|A Chain A, Crystal Structure Of The Pdz Domain Of Mpp7
Length = 93
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVL 38
+GGA G I GD + +VN I E+ +E +++L
Sbjct: 37 RGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQIL 73
>pdb|1WFV|A Chain A, Solution Structure Of The Fifth Pdz Domain Of Human
Membrane Associated Guanylate Kinase Inverted-2
(Kiaa0705 Protein)
Length = 103
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 10/52 (19%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+GR+ GD I+++N + +M++ A+ +++ ++ ++L++ + P
Sbjct: 52 NGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRR---VRLLLKRGTGSGP 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,925,899
Number of Sequences: 62578
Number of extensions: 153999
Number of successful extensions: 530
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 367
Number of HSP's gapped (non-prelim): 179
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)