Query psy1030
Match_columns 114
No_of_seqs 188 out of 1123
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:54:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1030.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1030hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3571|consensus 100.0 8.1E-29 1.8E-33 204.5 8.1 95 1-96 285-379 (626)
2 PF00595 PDZ: PDZ domain (Also 99.2 3.5E-11 7.5E-16 77.0 6.2 49 1-53 33-81 (81)
3 KOG3550|consensus 99.2 4.4E-11 9.6E-16 87.4 5.5 51 1-54 123-173 (207)
4 KOG3209|consensus 98.7 1.1E-08 2.4E-13 88.6 5.2 52 1-55 786-837 (984)
5 KOG3209|consensus 98.7 1.7E-08 3.6E-13 87.5 5.6 50 2-55 932-981 (984)
6 KOG3549|consensus 98.7 2E-08 4.4E-13 81.5 4.1 50 2-54 89-138 (505)
7 KOG3605|consensus 98.6 5.9E-08 1.3E-12 83.4 5.6 54 1-55 681-734 (829)
8 cd00136 PDZ PDZ domain, also c 98.6 3E-07 6.4E-12 56.6 6.8 48 2-52 22-69 (70)
9 smart00228 PDZ Domain present 98.6 3.4E-07 7.5E-12 57.5 7.0 50 2-55 35-84 (85)
10 cd00992 PDZ_signaling PDZ doma 98.5 3.6E-07 7.9E-12 57.5 6.5 47 2-52 35-81 (82)
11 KOG3553|consensus 98.5 1.4E-08 3.1E-13 69.5 -1.4 49 2-55 68-116 (124)
12 KOG3552|consensus 98.5 1.7E-07 3.8E-12 83.1 4.7 58 2-64 84-142 (1298)
13 KOG3551|consensus 98.4 1.9E-07 4.2E-12 76.5 4.1 50 1-53 118-167 (506)
14 KOG1892|consensus 98.4 2.2E-07 4.8E-12 82.9 4.4 53 1-56 968-1020(1629)
15 COG0793 Prc Periplasmic protea 98.4 4.3E-07 9.3E-12 74.6 5.5 65 1-69 120-184 (406)
16 KOG0609|consensus 98.4 6.2E-07 1.3E-11 75.6 6.1 74 1-77 154-235 (542)
17 PF13180 PDZ_2: PDZ domain; PD 98.3 3.4E-06 7.5E-11 53.9 6.5 51 1-55 22-72 (82)
18 cd00988 PDZ_CTP_protease PDZ d 98.3 5.2E-06 1.1E-10 52.7 6.7 51 2-55 22-72 (85)
19 KOG3580|consensus 98.2 1.9E-06 4.2E-11 74.2 5.6 51 3-56 229-279 (1027)
20 PRK11186 carboxy-terminal prot 98.1 3.7E-06 8E-11 73.0 5.6 53 1-55 263-320 (667)
21 cd00991 PDZ_archaeal_metallopr 97.9 6.7E-05 1.5E-09 47.8 7.0 50 2-55 19-68 (79)
22 cd00986 PDZ_LON_protease PDZ d 97.9 9E-05 1.9E-09 46.8 6.9 49 2-55 17-65 (79)
23 PLN00049 carboxyl-terminal pro 97.9 4.7E-05 1E-09 62.0 7.0 52 1-55 110-161 (389)
24 cd00989 PDZ_metalloprotease PD 97.9 0.0001 2.2E-09 46.0 7.0 49 2-55 21-69 (79)
25 TIGR00225 prc C-terminal pepti 97.8 7.1E-05 1.5E-09 59.5 6.5 53 1-56 70-122 (334)
26 cd00990 PDZ_glycyl_aminopeptid 97.7 0.00011 2.4E-09 46.1 5.0 47 2-55 21-67 (80)
27 KOG3580|consensus 97.6 6.2E-05 1.4E-09 65.1 4.4 50 1-55 48-97 (1027)
28 cd00987 PDZ_serine_protease PD 97.5 0.00056 1.2E-08 43.4 6.9 50 2-55 33-82 (90)
29 KOG3651|consensus 97.5 0.0002 4.4E-09 57.6 5.2 52 1-55 38-89 (429)
30 TIGR01713 typeII_sec_gspC gene 97.4 0.00072 1.6E-08 52.6 6.9 50 3-56 201-250 (259)
31 KOG3542|consensus 97.2 0.00018 3.9E-09 63.1 2.4 49 1-54 570-618 (1283)
32 TIGR02037 degP_htrA_DO peripla 97.2 0.0016 3.4E-08 53.4 7.0 51 2-56 266-316 (428)
33 TIGR02037 degP_htrA_DO peripla 97.1 0.0017 3.7E-08 53.2 7.0 50 2-55 371-420 (428)
34 TIGR00054 RIP metalloprotease 97.1 0.002 4.3E-08 53.0 7.0 50 2-56 212-261 (420)
35 PRK10942 serine endoprotease; 97.0 0.0021 4.5E-08 53.8 6.8 49 2-56 417-465 (473)
36 PRK10139 serine endoprotease; 97.0 0.0023 5.1E-08 53.3 6.9 48 2-55 399-446 (455)
37 KOG3606|consensus 96.9 0.0016 3.5E-08 51.8 4.8 50 1-53 202-251 (358)
38 PRK10779 zinc metallopeptidase 96.9 0.0035 7.6E-08 51.9 7.0 50 2-56 230-279 (449)
39 TIGR02038 protease_degS peripl 96.9 0.0038 8.2E-08 50.2 7.0 50 2-55 287-336 (351)
40 KOG3605|consensus 96.9 0.00051 1.1E-08 59.8 1.9 46 1-50 764-809 (829)
41 PRK10779 zinc metallopeptidase 96.9 0.0028 6E-08 52.5 6.1 51 2-56 135-185 (449)
42 PRK10139 serine endoprotease; 96.8 0.0047 1E-07 51.5 7.0 51 2-56 299-349 (455)
43 PRK10898 serine endoprotease; 96.7 0.0074 1.6E-07 48.7 7.1 50 2-55 288-337 (353)
44 PRK10942 serine endoprotease; 96.6 0.0085 1.8E-07 50.2 7.1 51 2-56 320-370 (473)
45 PRK09681 putative type II secr 96.4 0.0058 1.3E-07 48.3 4.9 48 7-57 220-267 (276)
46 TIGR02860 spore_IV_B stage IV 96.3 0.013 2.8E-07 48.6 6.6 46 6-55 125-170 (402)
47 PF14685 Tricorn_PDZ: Tricorn 95.9 0.013 2.9E-07 38.8 4.0 41 11-55 39-79 (88)
48 TIGR00054 RIP metalloprotease 95.9 0.022 4.8E-07 46.9 6.2 48 2-55 137-184 (420)
49 TIGR03279 cyano_FeS_chp putati 95.9 0.027 5.8E-07 47.1 6.6 45 2-54 7-51 (433)
50 COG3031 PulC Type II secretory 94.8 0.095 2.1E-06 41.1 6.0 51 4-57 217-267 (275)
51 KOG3938|consensus 93.9 0.035 7.5E-07 44.2 1.8 51 2-53 158-208 (334)
52 KOG1421|consensus 93.8 0.12 2.7E-06 45.8 5.2 51 1-57 311-361 (955)
53 COG3480 SdrC Predicted secrete 93.1 0.32 6.9E-06 39.5 6.1 46 9-57 144-189 (342)
54 COG0265 DegQ Trypsin-like seri 92.8 0.23 5.1E-06 39.4 5.1 50 2-55 279-328 (347)
55 KOG0606|consensus 92.4 0.21 4.5E-06 46.2 4.6 48 3-53 667-714 (1205)
56 KOG1738|consensus 91.1 0.33 7.2E-06 42.3 4.3 54 1-57 233-286 (638)
57 KOG3129|consensus 90.4 0.85 1.9E-05 35.1 5.5 54 2-57 148-201 (231)
58 PF04495 GRASP55_65: GRASP55/6 89.7 0.7 1.5E-05 32.9 4.4 50 1-55 51-101 (138)
59 KOG1320|consensus 86.8 1.5 3.2E-05 37.3 5.2 51 1-55 406-456 (473)
60 COG3975 Predicted protease wit 86.1 0.27 5.9E-06 42.2 0.5 22 2-24 471-492 (558)
61 PF12812 PDZ_1: PDZ-like domai 85.4 1.8 3.9E-05 27.8 4.0 38 2-41 38-75 (78)
62 KOG3532|consensus 83.4 2.8 6.1E-05 37.6 5.5 50 2-57 407-456 (1051)
63 KOG4371|consensus 79.8 1.9 4.1E-05 40.1 3.3 43 10-55 1185-1227(1332)
64 PRK13810 orotate phosphoribosy 73.2 8.9 0.00019 28.4 4.9 38 9-49 116-153 (187)
65 PTZ00173 60S ribosomal protein 62.0 17 0.00037 27.9 4.4 47 8-57 125-172 (213)
66 COG0461 PyrE Orotate phosphori 61.8 20 0.00044 27.1 4.8 39 8-49 105-143 (201)
67 COG0750 Predicted membrane-ass 61.2 39 0.00084 26.7 6.6 46 4-54 140-188 (375)
68 PRK05500 bifunctional orotidin 59.0 21 0.00044 30.4 4.9 41 8-51 386-426 (477)
69 TIGR01744 XPRTase xanthine pho 58.0 22 0.00049 26.3 4.5 36 11-49 113-148 (191)
70 PRK13812 orotate phosphoribosy 55.7 29 0.00063 25.3 4.7 33 9-41 101-133 (176)
71 PRK13809 orotate phosphoribosy 55.7 28 0.00061 26.1 4.7 33 9-41 112-144 (206)
72 PRK09219 xanthine phosphoribos 54.4 24 0.00052 26.1 4.1 36 11-49 113-148 (189)
73 TIGR00336 pyrE orotate phospho 54.1 29 0.00063 24.9 4.4 32 10-41 103-134 (173)
74 TIGR01164 rplP_bact ribosomal 53.8 15 0.00032 25.7 2.7 32 5-41 89-120 (126)
75 PLN02293 adenine phosphoribosy 53.2 32 0.0007 25.4 4.6 32 10-41 120-151 (187)
76 PRK09203 rplP 50S ribosomal pr 52.9 15 0.00033 26.0 2.7 33 5-42 90-122 (138)
77 PRK04199 rpl10e 50S ribosomal 51.9 41 0.00088 25.0 4.9 47 5-54 119-166 (172)
78 cd01433 Ribosomal_L16_L10e Rib 49.6 16 0.00035 24.6 2.4 34 4-41 68-101 (112)
79 KOG4407|consensus 48.9 19 0.00041 34.9 3.2 49 2-54 152-200 (1973)
80 KOG1421|consensus 46.2 13 0.00028 33.6 1.7 22 12-33 786-807 (955)
81 PF01455 HupF_HypC: HupF/HypC 43.4 24 0.00053 22.0 2.3 30 11-40 37-66 (68)
82 PRK12560 adenine phosphoribosy 43.0 59 0.0013 23.8 4.7 35 11-48 110-144 (187)
83 TIGR00279 L10e ribosomal prote 41.3 59 0.0013 24.1 4.4 48 5-55 119-167 (172)
84 CHL00044 rpl16 ribosomal prote 41.3 19 0.00042 25.5 1.7 33 5-42 90-122 (135)
85 KOG4371|consensus 38.8 28 0.0006 32.9 2.7 49 4-55 1281-1329(1332)
86 PRK06031 phosphoribosyltransfe 38.3 65 0.0014 24.7 4.3 30 12-41 151-180 (233)
87 cd01674 Homoaconitase_Swivel H 37.7 82 0.0018 22.3 4.4 40 9-55 40-80 (129)
88 PRK09213 pur operon repressor; 37.6 84 0.0018 24.8 5.0 31 11-41 192-222 (271)
89 COG0197 RplP Ribosomal protein 34.8 17 0.00036 26.4 0.6 33 5-42 93-125 (146)
90 KOG1712|consensus 34.6 68 0.0015 24.0 3.7 33 9-41 116-148 (183)
91 PRK02304 adenine phosphoribosy 34.6 84 0.0018 22.4 4.3 31 11-41 110-140 (175)
92 TIGR01090 apt adenine phosphor 33.9 79 0.0017 22.5 4.0 30 12-41 106-135 (169)
93 TIGR01743 purR_Bsub pur operon 33.4 97 0.0021 24.4 4.7 31 11-41 190-220 (268)
94 PRK02277 orotate phosphoribosy 32.6 1E+02 0.0022 22.7 4.5 30 12-41 137-166 (200)
95 TIGR00074 hypC_hupF hydrogenas 32.4 71 0.0015 20.4 3.2 31 10-40 34-64 (76)
96 KOG0708|consensus 31.7 51 0.0011 27.3 2.9 32 20-54 2-33 (359)
97 PF00156 Pribosyltran: Phospho 31.7 85 0.0018 20.3 3.6 33 9-41 82-114 (125)
98 COG0503 Apt Adenine/guanine ph 30.9 85 0.0018 22.9 3.8 36 10-48 111-146 (179)
99 PRK06388 amidophosphoribosyltr 30.7 91 0.002 26.5 4.4 40 14-55 355-394 (474)
100 PRK08558 adenine phosphoribosy 30.3 1.1E+02 0.0024 23.3 4.5 31 11-41 172-202 (238)
101 PRK07322 adenine phosphoribosy 30.3 1.8E+02 0.0038 21.0 5.4 42 13-57 118-161 (178)
102 PF02563 Poly_export: Polysacc 30.0 54 0.0012 20.6 2.3 22 21-42 46-67 (82)
103 PRK06781 amidophosphoribosyltr 29.6 1.3E+02 0.0028 25.5 5.1 40 14-55 347-386 (471)
104 KOG0174|consensus 28.9 65 0.0014 24.7 2.9 35 21-55 158-200 (224)
105 TIGR00201 comF comF family pro 27.7 1.3E+02 0.0028 21.8 4.3 28 14-41 151-178 (190)
106 COG4422 Bacteriophage protein 27.1 1.3E+02 0.0029 23.1 4.3 64 21-88 140-212 (250)
107 PRK13811 orotate phosphoribosy 26.5 1.3E+02 0.0028 21.6 4.1 29 13-41 102-130 (170)
108 KOG2921|consensus 26.2 45 0.00098 28.3 1.8 19 11-29 238-256 (484)
109 COG1040 ComFC Predicted amidop 26.1 1.4E+02 0.0031 22.5 4.4 44 10-54 179-222 (225)
110 PF00252 Ribosomal_L16: Riboso 26.0 37 0.00081 23.7 1.1 31 8-42 92-122 (133)
111 TIGR01367 pyrE_Therm orotate p 25.5 1.4E+02 0.0031 21.8 4.2 30 12-41 102-131 (187)
112 PRK10413 hydrogenase 2 accesso 25.5 1E+02 0.0022 20.0 3.1 31 11-41 42-72 (82)
113 KOG3834|consensus 24.6 1E+02 0.0023 26.2 3.6 49 3-55 25-73 (462)
114 TIGR02087 LEUD_arch 3-isopropy 24.0 1.6E+02 0.0035 21.2 4.2 38 10-54 43-81 (154)
115 PF08383 Maf_N: Maf N-terminal 23.7 71 0.0015 17.7 1.7 16 25-40 19-34 (35)
116 PRK07631 amidophosphoribosyltr 23.6 1.9E+02 0.004 24.7 5.0 41 13-55 346-386 (475)
117 PRK09162 hypoxanthine-guanine 23.0 1.4E+02 0.003 21.6 3.7 28 14-41 96-123 (181)
118 PRK00455 pyrE orotate phosphor 22.3 2.1E+02 0.0046 20.9 4.6 32 10-41 108-139 (202)
119 cd01579 AcnA_Bact_Swivel Bacte 22.3 1.7E+02 0.0038 20.2 3.9 41 10-55 42-83 (121)
120 TIGR01134 purF amidophosphorib 22.3 1.8E+02 0.004 24.2 4.7 39 14-54 337-375 (442)
121 KOG0792|consensus 22.0 65 0.0014 30.4 2.1 33 9-41 765-797 (1144)
122 PRK08341 amidophosphoribosyltr 21.9 1.8E+02 0.004 24.4 4.6 40 14-55 333-372 (442)
123 PF07591 PT-HINT: Pretoxin HIN 21.8 53 0.0011 22.7 1.2 16 10-25 75-90 (130)
124 PF03793 PASTA: PASTA domain; 20.9 1.2E+02 0.0027 17.5 2.6 17 25-41 5-21 (63)
No 1
>KOG3571|consensus
Probab=99.95 E-value=8.1e-29 Score=204.51 Aligned_cols=95 Identities=78% Similarity=1.334 Sum_probs=91.8
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCCCCCcCCCCCCCCCCChhhH
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRTEPVRPIDPGAW 80 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~~~~~~~~~~pr~~~~~P~d~~~~ 80 (114)
++||++|+||||.+||+||+||.++|+||+.+|||++||+++++.++++|+|++||+|++.+|||+||.||++|||+++|
T Consensus 285 mkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~~gPi~ltvAk~~DP~~q~~fTipr~epvrPIDp~aw 364 (626)
T KOG3571|consen 285 MKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSRPGPIKLTVAKCWDPNPQSYFTIPRGEPVRPIDPAAW 364 (626)
T ss_pred ccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhccCCCeEEEEeeccCCCCcccccCCCCCcCCcCCHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCcc
Q psy1030 81 VAHTAAIRGDGFPFLR 96 (114)
Q Consensus 81 ~~~~~a~~~~~~p~~~ 96 (114)
++|++|++| .+|.+.
T Consensus 365 v~ht~a~tg-~~pa~~ 379 (626)
T KOG3571|consen 365 VSHTQALTG-APPAII 379 (626)
T ss_pred HHHHHHhcc-CCccch
Confidence 999999999 667764
No 2
>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]. PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....
Probab=99.22 E-value=3.5e-11 Score=76.95 Aligned_cols=49 Identities=33% Similarity=0.609 Sum_probs=45.4
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~ 53 (114)
.|+|+|+++| |++||+|++|||+++.++++++++++|+.+ .+.|+|+|.
T Consensus 33 ~~~~~a~~~g-l~~GD~Il~INg~~v~~~~~~~~~~~l~~~---~~~v~L~V~ 81 (81)
T PF00595_consen 33 VPGSPAERAG-LKVGDRILEINGQSVRGMSHDEVVQLLKSA---SNPVTLTVQ 81 (81)
T ss_dssp CTTSHHHHHT-SSTTEEEEEETTEESTTSBHHHHHHHHHHS---TSEEEEEEE
T ss_pred eCCChHHhcc-cchhhhhheeCCEeCCCCCHHHHHHHHHCC---CCcEEEEEC
Confidence 3789999999 999999999999999999999999999998 668999874
No 3
>KOG3550|consensus
Probab=99.17 E-value=4.4e-11 Score=87.36 Aligned_cols=51 Identities=33% Similarity=0.601 Sum_probs=48.9
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
||||+|++.|+|+-||++++|||+++++-.|+.|+++||.+ .+.|+|+|+-
T Consensus 123 ipggvadrhgglkrgdqllsvngvsvege~hekavellkaa---~gsvklvvry 173 (207)
T KOG3550|consen 123 IPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAA---VGSVKLVVRY 173 (207)
T ss_pred cCCccccccCcccccceeEeecceeecchhhHHHHHHHHHh---cCcEEEEEec
Confidence 79999999999999999999999999999999999999999 7999999973
No 4
>KOG3209|consensus
Probab=98.75 E-value=1.1e-08 Score=88.62 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=49.6
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
|+|++|+|.|+|++||+|++|||+++.+++|.+.++++|.+ +-.|+|+|...
T Consensus 786 ieGSPAdRCgkLkVGDrilAVNG~sI~~lsHadiv~LIKda---GlsVtLtIip~ 837 (984)
T KOG3209|consen 786 IEGSPADRCGKLKVGDRILAVNGQSILNLSHADIVSLIKDA---GLSVTLTIIPP 837 (984)
T ss_pred ccCChhHhhccccccceEEEecCeeeeccCchhHHHHHHhc---CceEEEEEcCh
Confidence 68999999999999999999999999999999999999998 88999999865
No 5
>KOG3209|consensus
Probab=98.73 E-value=1.7e-08 Score=87.51 Aligned_cols=50 Identities=26% Similarity=0.505 Sum_probs=44.9
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+.|+|.++||+++||+|++|||.+..+|+|+.|++++|+ ++.+.|+++|+
T Consensus 932 eDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelIk~----gg~~vll~Lr~ 981 (984)
T KOG3209|consen 932 EDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELIKQ----GGRRVLLLLRR 981 (984)
T ss_pred cCCCccccCceeecceEEEecCcccCCCcHHHHHHHHHh----CCeEEEEEecc
Confidence 579999999999999999999999999999999999998 46666666665
No 6
>KOG3549|consensus
Probab=98.66 E-value=2e-08 Score=81.50 Aligned_cols=50 Identities=34% Similarity=0.506 Sum_probs=46.8
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
++.+|+..|.|.+||.|++|||+.+++++|+|++++||++ +..|+|+|..
T Consensus 89 kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNA---GdeVtlTV~~ 138 (505)
T KOG3549|consen 89 KDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNA---GDEVTLTVKH 138 (505)
T ss_pred hhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhc---CCEEEEEeHh
Confidence 4568999999999999999999999999999999999999 8999999974
No 7
>KOG3605|consensus
Probab=98.61 E-value=5.9e-08 Score=83.43 Aligned_cols=54 Identities=22% Similarity=0.543 Sum_probs=51.5
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
|.+|+|+++|.|.+||+|+.|||.++.++....+..++|+. |+...|+|+|.+|
T Consensus 681 m~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~-KnQT~VkltiV~c 734 (829)
T KOG3605|consen 681 MHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGL-KNQTAVKLNIVSC 734 (829)
T ss_pred ccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhcc-cccceEEEEEecC
Confidence 57999999999999999999999999999999999999998 6788999999999
No 8
>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos
Probab=98.58 E-value=3e-07 Score=56.55 Aligned_cols=48 Identities=25% Similarity=0.485 Sum_probs=41.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEE
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V 52 (114)
++++|+. ++|++||.|++|||.++.+.+++++.++|+... +..++|++
T Consensus 22 ~~s~a~~-~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~--g~~v~l~v 69 (70)
T cd00136 22 PGSPAER-AGLQAGDVILAVNGTDVKNLTLEDVAELLKKEV--GEKVTLTV 69 (70)
T ss_pred CCCHHHH-cCCCCCCEEEEECCEECCCCCHHHHHHHHhhCC--CCeEEEEE
Confidence 5677765 679999999999999999999999999999872 46788876
No 9
>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.
Probab=98.57 E-value=3.4e-07 Score=57.50 Aligned_cols=50 Identities=34% Similarity=0.566 Sum_probs=44.2
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++.| |++||.|++|||..+.++++.+....++.. +..+.|++.|+
T Consensus 35 ~~s~a~~~g-l~~GD~I~~In~~~v~~~~~~~~~~~~~~~---~~~~~l~i~r~ 84 (85)
T smart00228 35 PGSPAAKAG-LKVGDVILEVNGTSVEGLTHLEAVDLLKKA---GGKVTLTVLRG 84 (85)
T ss_pred CCCHHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHHhC---CCeEEEEEEeC
Confidence 567888877 999999999999999999999999999886 56889988875
No 10
>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.
Probab=98.54 E-value=3.6e-07 Score=57.47 Aligned_cols=47 Identities=34% Similarity=0.621 Sum_probs=40.4
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEE
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V 52 (114)
++++|++ .+|++||+|++|||.++.+++++++.+.|+.. ...+.|++
T Consensus 35 ~~s~a~~-~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~---~~~v~l~v 81 (82)
T cd00992 35 PGGPAER-GGLRVGDRILEVNGVSVEGLTHEEAVELLKNS---GDEVTLTV 81 (82)
T ss_pred CCChHHh-CCCCCCCEEEEECCEEcCccCHHHHHHHHHhC---CCeEEEEE
Confidence 4666666 77999999999999999999999999999986 45777765
No 11
>KOG3553|consensus
Probab=98.47 E-value=1.4e-08 Score=69.52 Aligned_cols=49 Identities=29% Similarity=0.518 Sum_probs=42.6
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+||+|+..| |+.+|.||+|||.+++-++|++|+..|++. ..+.+.|.|.
T Consensus 68 eGsPA~~AG-LrihDKIlQvNG~DfTMvTHd~Avk~i~k~----~vl~mLVaR~ 116 (124)
T KOG3553|consen 68 EGSPAEIAG-LRIHDKILQVNGWDFTMVTHDQAVKRITKE----EVLRMLVARQ 116 (124)
T ss_pred cCChhhhhc-ceecceEEEecCceeEEEEhHHHHHHhhHh----HHHHHHHHhh
Confidence 466777655 999999999999999999999999999984 7788888876
No 12
>KOG3552|consensus
Probab=98.46 E-value=1.7e-07 Score=83.11 Aligned_cols=58 Identities=31% Similarity=0.654 Sum_probs=51.8
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe-cCCCCCCCCC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK-CWDPNPKGYF 64 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r-~~~~~~~~~~ 64 (114)
+||++ -|.|++||+|++|||.+++.++++.+++++|.+ +..|.|+|++ |..|.||+-|
T Consensus 84 ~GGps--~GKL~PGDQIl~vN~Epv~daprervIdlvRac---e~sv~ltV~qPc~~p~pKStf 142 (1298)
T KOG3552|consen 84 EGGPS--IGKLQPGDQILAVNGEPVKDAPRERVIDLVRAC---ESSVNLTVCQPCVLPGPKSTF 142 (1298)
T ss_pred CCCCc--cccccCCCeEEEecCcccccccHHHHHHHHHHH---hhhcceEEeccccCCCchhhh
Confidence 56665 589999999999999999999999999999999 8999999998 7777777655
No 13
>KOG3551|consensus
Probab=98.44 E-value=1.9e-07 Score=76.54 Aligned_cols=50 Identities=34% Similarity=0.456 Sum_probs=46.3
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~ 53 (114)
|+|=+|+..+.|..||.||+|||.++...+|+|||+.||.+ +..|.|.|.
T Consensus 118 FkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKra---GkeV~levK 167 (506)
T KOG3551|consen 118 FKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRA---GKEVLLEVK 167 (506)
T ss_pred ccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhh---Cceeeeeee
Confidence 56778999999999999999999999999999999999998 788888886
No 14
>KOG1892|consensus
Probab=98.42 E-value=2.2e-07 Score=82.87 Aligned_cols=53 Identities=34% Similarity=0.543 Sum_probs=50.2
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++||+|+.||||+.||++|.|||.++-+++.+.|.+++... +..|.|.|+|..
T Consensus 968 V~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrt---g~vV~leVaKqg 1020 (1629)
T KOG1892|consen 968 VEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRT---GNVVHLEVAKQG 1020 (1629)
T ss_pred ccCCccccccccccCceeeeecCcccccccHHHHHHHHhcc---CCeEEEehhhhh
Confidence 58999999999999999999999999999999999999987 889999999863
No 15
>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]
Probab=98.41 E-value=4.3e-07 Score=74.60 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=53.8
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCCCCCcCCCC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPRT 69 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~~~~~~~~~~pr~ 69 (114)
+++++|++.| |++||.|++|||.++.+++.++|+..||+. .+..|+|++.|... .....+++.|+
T Consensus 120 ~~~~PA~kag-i~~GD~I~~IdG~~~~~~~~~~av~~irG~--~Gt~V~L~i~r~~~-~k~~~v~l~Re 184 (406)
T COG0793 120 IDGSPAAKAG-IKPGDVIIKIDGKSVGGVSLDEAVKLIRGK--PGTKVTLTILRAGG-GKPFTVTLTRE 184 (406)
T ss_pred CCCChHHHcC-CCCCCEEEEECCEEccCCCHHHHHHHhCCC--CCCeEEEEEEEcCC-CceeEEEEEEE
Confidence 5899999999 999999999999999999999999999987 47799999999722 22234455543
No 16
>KOG0609|consensus
Probab=98.39 E-value=6.2e-07 Score=75.58 Aligned_cols=74 Identities=31% Similarity=0.582 Sum_probs=62.8
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCCCCC-------CCCCcC-CCCCCC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP-------KGYFTI-PRTEPV 72 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~~~~-------~~~~~~-pr~~~~ 72 (114)
+.||.+++.|.|+.||.|++|||+++.+.+.++...+|+++ .|.+++.|.....+.+ +..|+| |..+..
T Consensus 154 ~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~---~G~itfkiiP~~~~~~~~~~~~vra~FdYdP~~D~~ 230 (542)
T KOG0609|consen 154 MHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNS---RGSITFKIIPSYRPPPQQQVVFVRALFDYDPKEDDL 230 (542)
T ss_pred ccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhC---CCcEEEEEcccccCCCceeeeeehhhcCcCcccCCc
Confidence 47999999999999999999999999999999999999998 6999999976533212 466777 788888
Q ss_pred CCCCh
Q psy1030 73 RPIDP 77 (114)
Q Consensus 73 ~P~d~ 77 (114)
.||--
T Consensus 231 IPCkE 235 (542)
T KOG0609|consen 231 IPCKE 235 (542)
T ss_pred ccchh
Confidence 88843
No 17
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=98.29 E-value=3.4e-06 Score=53.94 Aligned_cols=51 Identities=25% Similarity=0.507 Sum_probs=40.7
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.++++|++.| |++||.|++|||..+.+ ..+..+.|... +.+..|+|+|.|.
T Consensus 22 ~~~spA~~aG-l~~GD~I~~ing~~v~~--~~~~~~~l~~~-~~g~~v~l~v~R~ 72 (82)
T PF13180_consen 22 IPGSPAAKAG-LQPGDIILAINGKPVNS--SEDLVNILSKG-KPGDTVTLTVLRD 72 (82)
T ss_dssp STTSHHHHTT-S-TTEEEEEETTEESSS--HHHHHHHHHCS-STTSEEEEEEEET
T ss_pred CCCCcHHHCC-CCCCcEEEEECCEEcCC--HHHHHHHHHhC-CCCCEEEEEEEEC
Confidence 3678888877 99999999999999955 57777777643 3477999999996
No 18
>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=98.25 E-value=5.2e-06 Score=52.74 Aligned_cols=51 Identities=22% Similarity=0.429 Sum_probs=42.9
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+.++++...+++.. .+..+.|++.|.
T Consensus 22 ~~s~a~~~-gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~--~~~~i~l~v~r~ 72 (85)
T cd00988 22 PGSPAAKA-GIKAGDIIVAIDGEPVDGLSLEDVVKLLRGK--AGTKVRLTLKRG 72 (85)
T ss_pred CCCCHHHc-CCCCCCEEEEECCEEcCCCCHHHHHHHhcCC--CCCEEEEEEEcC
Confidence 56777775 6999999999999999999889999998764 256789999875
No 19
>KOG3580|consensus
Probab=98.23 E-value=1.9e-06 Score=74.17 Aligned_cols=51 Identities=35% Similarity=0.541 Sum_probs=48.2
Q ss_pred CchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 3 gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
.|.|+++|+|+.||.||+|||+..+||+..+|..++.+. .+.+.|+|.|..
T Consensus 229 ~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS---~GKL~lvVlRD~ 279 (1027)
T KOG3580|consen 229 TGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKS---RGKLQLVVLRDS 279 (1027)
T ss_pred cchhhccCCcccccEEEEECcEeeccccchhHHHHHHhc---cCceEEEEEecC
Confidence 589999999999999999999999999999999999987 899999999863
No 20
>PRK11186 carboxy-terminal protease; Provisional
Probab=98.14 E-value=3.7e-06 Score=73.01 Aligned_cols=53 Identities=21% Similarity=0.396 Sum_probs=46.7
Q ss_pred CCCchhhhcCCCCCCCEEEEECC-----EECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVND-----INFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg-----~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+|||+|++.++|++||.|++||+ +++.+++.++++.+|++. .+..|+|+|.|.
T Consensus 263 ipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~--~Gt~V~LtV~r~ 320 (667)
T PRK11186 263 VAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGP--KGSKVRLEILPA 320 (667)
T ss_pred cCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCC--CCCEEEEEEEeC
Confidence 68999999989999999999994 467789999999999987 477899999874
No 21
>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.92 E-value=6.7e-05 Score=47.77 Aligned_cols=50 Identities=16% Similarity=0.276 Sum_probs=38.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++ .+|++||.|++|||..+.+ .++....|... ..+..+.|++.|.
T Consensus 19 ~~spa~~-aGL~~GDiI~~Ing~~v~~--~~d~~~~l~~~-~~g~~v~l~v~r~ 68 (79)
T cd00991 19 VGSPAEN-AVLHTGDVIYSINGTPITT--LEDFMEALKPT-KPGEVITVTVLPS 68 (79)
T ss_pred CCChHHh-cCCCCCCEEEEECCEEcCC--HHHHHHHHhcC-CCCCEEEEEEEEC
Confidence 4566655 4699999999999999985 67788888764 1256789999875
No 22
>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases. Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.87 E-value=9e-05 Score=46.82 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=38.1
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|+. | |++||.|++|||..+.+ .++...+|+.. +.+..+.|++.|.
T Consensus 17 ~~s~A~~-g-L~~GD~I~~Ing~~v~~--~~~~~~~l~~~-~~~~~v~l~v~r~ 65 (79)
T cd00986 17 EGMPAAG-K-LKAGDHIIAVDGKPFKE--AEELIDYIQSK-KEGDTVKLKVKRE 65 (79)
T ss_pred CCCchhh-C-CCCCCEEEEECCEECCC--HHHHHHHHHhC-CCCCEEEEEEEEC
Confidence 5677764 5 99999999999999985 66777788753 1255789999875
No 23
>PLN00049 carboxyl-terminal processing protease; Provisional
Probab=97.86 E-value=4.7e-05 Score=61.99 Aligned_cols=52 Identities=31% Similarity=0.485 Sum_probs=44.5
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+++++|++.| |++||+|++|||.++.+.+..++..+|++. .+..|.|+|.|.
T Consensus 110 ~~~SPA~~aG-l~~GD~Iv~InG~~v~~~~~~~~~~~l~g~--~g~~v~ltv~r~ 161 (389)
T PLN00049 110 APGGPAARAG-IRPGDVILAIDGTSTEGLSLYEAADRLQGP--EGSSVELTLRRG 161 (389)
T ss_pred CCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHHHhcC--CCCEEEEEEEEC
Confidence 3678888776 999999999999999999999999999865 266899999875
No 24
>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.86 E-value=0.0001 Score=45.99 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=38.4
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+ .++....|+.. .+..+.+++.|.
T Consensus 21 ~~s~a~~~-gl~~GD~I~~ing~~i~~--~~~~~~~l~~~--~~~~~~l~v~r~ 69 (79)
T cd00989 21 PGSPAAKA-GLKAGDRILAINGQKIKS--WEDLVDAVQEN--PGKPLTLTVERN 69 (79)
T ss_pred CCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHHC--CCceEEEEEEEC
Confidence 45666654 599999999999999986 57788888765 245788888875
No 25
>TIGR00225 prc C-terminal peptidase (prc). A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.
Probab=97.78 E-value=7.1e-05 Score=59.52 Aligned_cols=53 Identities=30% Similarity=0.510 Sum_probs=44.4
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
+++++|++.| |++||.|++|||..+.+.+..+....|+.. .+..+.|+|.|..
T Consensus 70 ~~~spA~~aG-L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~--~g~~v~l~v~R~g 122 (334)
T TIGR00225 70 FEGSPAEKAG-IKPGDKIIKINGKSVAGMSLDDAVALIRGK--KGTKVSLEILRAG 122 (334)
T ss_pred CCCChHHHcC-CCCCCEEEEECCEECCCCCHHHHHHhccCC--CCCEEEEEEEeCC
Confidence 3678888877 999999999999999998888888888764 2668999998863
No 26
>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.68 E-value=0.00011 Score=46.13 Aligned_cols=47 Identities=23% Similarity=0.391 Sum_probs=34.0
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|+..| |++||.|++|||..+.+ ..+. ++.. +.+..+.|++.|.
T Consensus 21 ~~s~a~~aG-l~~GD~I~~Ing~~v~~--~~~~---l~~~-~~~~~v~l~v~r~ 67 (80)
T cd00990 21 DDSPADKAG-LVAGDELVAVNGWRVDA--LQDR---LKEY-QAGDPVELTVFRD 67 (80)
T ss_pred CCChHHHhC-CCCCCEEEEECCEEhHH--HHHH---HHhc-CCCCEEEEEEEEC
Confidence 566766655 99999999999999877 3333 4432 1256889999875
No 27
>KOG3580|consensus
Probab=97.64 E-value=6.2e-05 Score=65.13 Aligned_cols=50 Identities=26% Similarity=0.437 Sum_probs=44.8
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+|||+| +|+||.||+|.-|||++.+|+.|.-|++.||.+ +..-.++|.|.
T Consensus 48 lpGGPA--eG~LQenDrvvMVNGvsMenv~haFAvQqLrks---gK~A~ItvkRp 97 (1027)
T KOG3580|consen 48 LPGGPA--EGLLQENDRVVMVNGVSMENVLHAFAVQQLRKS---GKVAAITVKRP 97 (1027)
T ss_pred cCCCCc--ccccccCCeEEEEcCcchhhhHHHHHHHHHHhh---ccceeEEeccc
Confidence 478887 689999999999999999999999999999998 66777888765
No 28
>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis. May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.
Probab=97.54 E-value=0.00056 Score=43.41 Aligned_cols=50 Identities=28% Similarity=0.432 Sum_probs=37.0
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+. ++..++++... .+..+.|.+.|.
T Consensus 33 ~~s~a~~~-gl~~GD~I~~Ing~~i~~~--~~~~~~l~~~~-~~~~i~l~v~r~ 82 (90)
T cd00987 33 PGSPAAKA-GLKPGDVILAVNGKPVKSV--ADLRRALAELK-PGDKVTLTVLRG 82 (90)
T ss_pred CCCHHHHc-CCCcCCEEEEECCEECCCH--HHHHHHHHhcC-CCCEEEEEEEEC
Confidence 45666665 5999999999999999864 45666676541 256789998875
No 29
>KOG3651|consensus
Probab=97.49 E-value=0.0002 Score=57.64 Aligned_cols=52 Identities=27% Similarity=0.381 Sum_probs=46.6
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
|.+.+|+++|+|+.||.|+.|||+++.+-+-.++.+++..+ .+.|++...+-
T Consensus 38 FD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~---~~eV~IhyNKL 89 (429)
T KOG3651|consen 38 FDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVS---LNEVKIHYNKL 89 (429)
T ss_pred ccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHh---ccceEEEehhc
Confidence 35679999999999999999999999999999999999987 68888887763
No 30
>TIGR01713 typeII_sec_gspC general secretion pathway protein C. This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.
Probab=97.37 E-value=0.00072 Score=52.64 Aligned_cols=50 Identities=14% Similarity=0.304 Sum_probs=38.6
Q ss_pred CchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 3 gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++++ .+|+.||.|++|||.++.+ .+++.+++.+. +.+..+.|+|.|..
T Consensus 201 ~s~a~~-aGLr~GDvIv~ING~~i~~--~~~~~~~l~~~-~~~~~v~l~V~R~G 250 (259)
T TIGR01713 201 PSLFYK-SGLQDGDIAVALNGLDLRD--PEQAFQALQML-REETNLTLTVERDG 250 (259)
T ss_pred CCHHHH-cCCCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCeEEEEEEECC
Confidence 455544 5699999999999999997 56677777765 23468999999863
No 31
>KOG3542|consensus
Probab=97.23 E-value=0.00018 Score=63.14 Aligned_cols=49 Identities=39% Similarity=0.607 Sum_probs=41.7
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
+||.-|++.| |+-||+|++|||.++++++...|+++|++. ..+.|+|..
T Consensus 570 ~pgskAa~~G-lKRgDqilEVNgQnfenis~~KA~eiLrnn----thLtltvKt 618 (1283)
T KOG3542|consen 570 FPGSKAAREG-LKRGDQILEVNGQNFENISAKKAEEILRNN----THLTLTVKT 618 (1283)
T ss_pred cCCchHHHhh-hhhhhhhhhccccchhhhhHHHHHHHhcCC----ceEEEEEec
Confidence 3566666665 999999999999999999999999999984 778888763
No 32
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.15 E-value=0.0016 Score=53.41 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=39.1
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++.| |++||+|++|||..+.+ ..+....|... +.+..+.|+|.|..
T Consensus 266 ~~spA~~aG-L~~GDvI~~Vng~~i~~--~~~~~~~l~~~-~~g~~v~l~v~R~g 316 (428)
T TIGR02037 266 PGSPAEKAG-LKAGDVILSVNGKPISS--FADLRRAIGTL-KPGKKVTLGILRKG 316 (428)
T ss_pred CCCChHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEECC
Confidence 677887776 99999999999999986 45555666543 23568999998863
No 33
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.
Probab=97.12 E-value=0.0017 Score=53.16 Aligned_cols=50 Identities=32% Similarity=0.546 Sum_probs=39.7
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++.| |++||.|++|||..+.+ .++..++|++. +.+..+.|+|.|.
T Consensus 371 ~~SpA~~aG-L~~GDvI~~Ing~~V~s--~~d~~~~l~~~-~~g~~v~l~v~R~ 420 (428)
T TIGR02037 371 SGSPAARAG-LQPGDVILSVNQQPVSS--VAELRKVLDRA-KKGGRVALLILRG 420 (428)
T ss_pred CCCHHHHcC-CCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 456666655 99999999999999986 67788888764 2357899999986
No 34
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=97.08 E-value=0.002 Score=53.03 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=39.4
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++ .+|++||+|++|||.++.+ .++..+.++.. .+..+.|+|.|..
T Consensus 212 ~~SpA~~-aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~--~~~~v~l~v~R~g 261 (420)
T TIGR00054 212 PNSPAEK-AGLKEGDYIQSINGEKLRS--WTDFVSAVKEN--PGKSMDIKVERNG 261 (420)
T ss_pred CCCHHHH-cCCCCCCEEEEECCEECCC--HHHHHHHHHhC--CCCceEEEEEECC
Confidence 4566665 4599999999999999976 77888888874 2567889988763
No 35
>PRK10942 serine endoprotease; Provisional
Probab=97.03 E-value=0.0021 Score=53.82 Aligned_cols=49 Identities=22% Similarity=0.305 Sum_probs=40.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++. +|++||.|++|||..+.+ .++..++|+.. ...+.|+|.|..
T Consensus 417 ~~S~A~~a-GL~~GDvIv~VNg~~V~s--~~dl~~~l~~~---~~~v~l~V~R~g 465 (473)
T PRK10942 417 PGTPAAQI-GLKKGDVIIGANQQPVKN--IAELRKILDSK---PSVLALNIQRGD 465 (473)
T ss_pred CCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEECC
Confidence 56777765 599999999999999998 67888888875 578999999863
No 36
>PRK10139 serine endoprotease; Provisional
Probab=97.01 E-value=0.0023 Score=53.29 Aligned_cols=48 Identities=27% Similarity=0.367 Sum_probs=39.3
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+ .++..++|++. ...+.|+|.|.
T Consensus 399 ~~spA~~a-GL~~GD~I~~Ing~~v~~--~~~~~~~l~~~---~~~v~l~v~R~ 446 (455)
T PRK10139 399 KGSPAAQA-GLQKDDVIIGVNRDRVNS--IAEMRKVLAAK---PAIIALQIVRG 446 (455)
T ss_pred CCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhC---CCeEEEEEEEC
Confidence 46666664 599999999999999977 67888888875 46889999886
No 37
>KOG3606|consensus
Probab=96.91 E-value=0.0016 Score=51.81 Aligned_cols=50 Identities=20% Similarity=0.329 Sum_probs=43.5
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~ 53 (114)
+|||.|+..|-|-+.|.+|+|||+.+.+.+.+|+-.++-.- ...+.++|.
T Consensus 202 VpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVTDMMvAN---shNLIiTVk 251 (358)
T KOG3606|consen 202 VPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVTDMMVAN---SHNLIITVK 251 (358)
T ss_pred cCCccccccceeeecceeEEEcCEEeccccHHHHHHHHhhc---ccceEEEec
Confidence 58999999999999999999999999999999999998753 345666665
No 38
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.90 E-value=0.0035 Score=51.90 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=38.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++ .+|++||+|++|||..+.+ .++..+.++.. .+..+.|+|.|..
T Consensus 230 ~~SpA~~-AGL~~GDvIl~Ing~~V~s--~~dl~~~l~~~--~~~~v~l~v~R~g 279 (449)
T PRK10779 230 PNSAASK-AGLQAGDRIVKVDGQPLTQ--WQTFVTLVRDN--PGKPLALEIERQG 279 (449)
T ss_pred CCCHHHH-cCCCCCCEEEEECCEEcCC--HHHHHHHHHhC--CCCEEEEEEEECC
Confidence 4566665 4599999999999999975 67777788764 3567889988764
No 39
>TIGR02038 protease_degS periplasmic serine pepetdase DegS. This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
Probab=96.89 E-value=0.0038 Score=50.22 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=38.4
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+ .++..+.|+.. +.+..+.|+|.|.
T Consensus 287 ~~spA~~a-GL~~GDvI~~Ing~~V~s--~~dl~~~l~~~-~~g~~v~l~v~R~ 336 (351)
T TIGR02038 287 PNGPAARA-GILVRDVILKYDGKDVIG--AEELMDRIAET-RPGSKVMVTVLRQ 336 (351)
T ss_pred CCChHHHC-CCCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 56677665 499999999999999987 55666666653 2367899999986
No 40
>KOG3605|consensus
Probab=96.88 E-value=0.00051 Score=59.77 Aligned_cols=46 Identities=22% Similarity=0.494 Sum_probs=40.0
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEE
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKL 50 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L 50 (114)
+.||.|+| |++++|.+|++|||.++....|+..|++|..+ -+.|.+
T Consensus 764 lRGGIAER-GGVRVGHRIIEINgQSVVA~pHekIV~lLs~a---VGEIhM 809 (829)
T KOG3605|consen 764 LRGGIAER-GGVRVGHRIIEINGQSVVATPHEKIVQLLSNA---VGEIHM 809 (829)
T ss_pred hcccchhc-cCceeeeeEEEECCceEEeccHHHHHHHHHHh---hhhhhh
Confidence 35788887 66999999999999999999999999999998 466554
No 41
>PRK10779 zinc metallopeptidase RseP; Provisional
Probab=96.86 E-value=0.0028 Score=52.52 Aligned_cols=51 Identities=20% Similarity=0.179 Sum_probs=37.2
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++. +|++||.|++|||+.+.+. ++....+... ..+..+.++|.|..
T Consensus 135 ~~SpA~kA-GLk~GDvI~~vnG~~V~~~--~~l~~~v~~~-~~g~~v~v~v~R~g 185 (449)
T PRK10779 135 PNSIAAQA-QIAPGTELKAVDGIETPDW--DAVRLALVSK-IGDESTTITVAPFG 185 (449)
T ss_pred CCCHHHHc-CCCCCCEEEEECCEEcCCH--HHHHHHHHhh-ccCCceEEEEEeCC
Confidence 56777765 5999999999999999985 4444444333 12457999999864
No 42
>PRK10139 serine endoprotease; Provisional
Probab=96.80 E-value=0.0047 Score=51.51 Aligned_cols=51 Identities=16% Similarity=0.170 Sum_probs=38.9
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++. +|++||.|++|||+.+.+ .++..+.|... +.+..+.|+|.|..
T Consensus 299 ~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~-~~g~~v~l~V~R~G 349 (455)
T PRK10139 299 PNSGSAKA-GVKAGDIITSLNGKPLNS--FAELRSRIATT-EPGTKVKLGLLRNG 349 (455)
T ss_pred CCChHHHC-CCCCCCEEEEECCEECCC--HHHHHHHHHhc-CCCCEEEEEEEECC
Confidence 56677654 599999999999999986 56777777653 23567899998753
No 43
>PRK10898 serine endoprotease; Provisional
Probab=96.68 E-value=0.0074 Score=48.68 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.9
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++. +|++||.|++|||..+.+ .++..+.|... +.+..+.|+|.|.
T Consensus 288 ~~spA~~a-GL~~GDvI~~Ing~~V~s--~~~l~~~l~~~-~~g~~v~l~v~R~ 337 (353)
T PRK10898 288 PDGPAAKA-GIQVNDLIISVNNKPAIS--ALETMDQVAEI-RPGSVIPVVVMRD 337 (353)
T ss_pred CCChHHHc-CCCCCCEEEEECCEEcCC--HHHHHHHHHhc-CCCCEEEEEEEEC
Confidence 56677764 599999999999999977 34445555542 2366899999986
No 44
>PRK10942 serine endoprotease; Provisional
Probab=96.59 E-value=0.0085 Score=50.20 Aligned_cols=51 Identities=14% Similarity=0.107 Sum_probs=38.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~ 56 (114)
++++|++. +|+.||.|++|||..+.+ .++..+.|... +.+..+.|+|.|..
T Consensus 320 ~~SpA~~A-GL~~GDvIl~InG~~V~s--~~dl~~~l~~~-~~g~~v~l~v~R~G 370 (473)
T PRK10942 320 PNSSAAKA-GIKAGDVITSLNGKPISS--FAALRAQVGTM-PVGSKLTLGLLRDG 370 (473)
T ss_pred CCChHHHc-CCCCCCEEEEECCEECCC--HHHHHHHHHhc-CCCCEEEEEEEECC
Confidence 56777764 599999999999999987 45566666554 23568999998863
No 45
>PRK09681 putative type II secretion protein GspC; Provisional
Probab=96.42 E-value=0.0058 Score=48.28 Aligned_cols=48 Identities=17% Similarity=0.301 Sum_probs=36.1
Q ss_pred hhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 7 a~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
=+.-+|+.||.+.+|||.++.+. +++.+++.+. .....++|+|.|...
T Consensus 220 F~~~GLq~GDva~sING~dL~D~--~qa~~l~~~L-~~~tei~ltVeRdGq 267 (276)
T PRK09681 220 FDASGFKEGDIAIALNQQDFTDP--RAMIALMRQL-PSMDSIQLTVLRKGA 267 (276)
T ss_pred HHHcCCCCCCEEEEeCCeeCCCH--HHHHHHHHHh-ccCCeEEEEEEECCE
Confidence 34568999999999999999985 4455555544 124789999999743
No 46
>TIGR02860 spore_IV_B stage IV sporulation protein B. SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.
Probab=96.33 E-value=0.013 Score=48.55 Aligned_cols=46 Identities=20% Similarity=0.354 Sum_probs=37.3
Q ss_pred hhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 6 VALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 6 Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.++..+|++||.|++|||..+.+ .++..++|+.. .+..+.|+|.|.
T Consensus 125 PAa~AGLq~GDiIvsING~~V~s--~~DL~~iL~~~--~g~~V~LtV~R~ 170 (402)
T TIGR02860 125 PGEEAGIQIGDRILKINGEKIKN--MDDLANLINKA--GGEKLTLTIERG 170 (402)
T ss_pred HHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhC--CCCeEEEEEEEC
Confidence 34445699999999999999986 67788888876 256899999875
No 47
>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A.
Probab=95.94 E-value=0.013 Score=38.83 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.+++||.|++|||+.+..-.. --.+|.+. .+..|.|+|.+.
T Consensus 39 ~v~~GD~I~aInG~~v~~~~~--~~~lL~~~--agk~V~Ltv~~~ 79 (88)
T PF14685_consen 39 DVREGDYILAINGQPVTADAN--PYRLLEGK--AGKQVLLTVNRK 79 (88)
T ss_dssp ---TT-EEEEETTEE-BTTB---HHHHHHTT--TTSEEEEEEE-S
T ss_pred CCCCCCEEEEECCEECCCCCC--HHHHhccc--CCCEEEEEEecC
Confidence 578999999999999986432 55667665 267899999976
No 48
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=95.93 E-value=0.022 Score=46.88 Aligned_cols=48 Identities=23% Similarity=0.312 Sum_probs=36.8
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++++|++ ++|++||.|++|||..+.+ ..+..+.+... .+++.+++.|.
T Consensus 137 ~~SpA~~-AGL~~GDvI~~vng~~v~~--~~dl~~~ia~~---~~~v~~~I~r~ 184 (420)
T TIGR00054 137 KNSIALE-AGIEPGDEILSVNGNKIPG--FKDVRQQIADI---AGEPMVEILAE 184 (420)
T ss_pred CCCHHHH-cCCCCCCEEEEECCEEcCC--HHHHHHHHHhh---cccceEEEEEe
Confidence 5666665 5699999999999999887 46666677665 36777888774
No 49
>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase. Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.
Probab=95.91 E-value=0.027 Score=47.10 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=32.6
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
|+++|++. +|++||+|++|||..+.+ +.+....+. ...+.|+|.+
T Consensus 7 pgSpAe~A-GLe~GD~IlsING~~V~D--w~D~~~~l~-----~e~l~L~V~~ 51 (433)
T TIGR03279 7 PGSIAEEL-GFEPGDALVSINGVAPRD--LIDYQFLCA-----DEELELEVLD 51 (433)
T ss_pred CCCHHHHc-CCCCCCEEEEECCEECCC--HHHHHHHhc-----CCcEEEEEEc
Confidence 56676655 599999999999999976 455544443 3567777763
No 50
>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]
Probab=94.82 E-value=0.095 Score=41.08 Aligned_cols=51 Identities=16% Similarity=0.431 Sum_probs=38.6
Q ss_pred chhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 4 G~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
|.+=..-+|+.||..+++|+.++++ -+++.++|+.. .....+.|+|.|...
T Consensus 217 ~slF~~sglq~GDIavaiNnldltd--p~~m~~llq~l-~~m~s~qlTv~R~G~ 267 (275)
T COG3031 217 GSLFYKSGLQRGDIAVAINNLDLTD--PEDMFRLLQML-RNMPSLQLTVIRRGK 267 (275)
T ss_pred cchhhhhcCCCcceEEEecCcccCC--HHHHHHHHHhh-hcCcceEEEEEecCc
Confidence 3333445699999999999999887 66677777665 235789999999854
No 51
>KOG3938|consensus
Probab=93.88 E-value=0.035 Score=44.20 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=41.7
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~ 53 (114)
+|++.++--.+++||.|-+|||.++.+..|-|+.++||+.. ++...+|.+.
T Consensus 158 egsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~-rge~ftlrLi 208 (334)
T KOG3938|consen 158 EGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELP-RGETFTLRLI 208 (334)
T ss_pred CCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcc-cCCeeEEEee
Confidence 46677777789999999999999999999999999999984 3445555444
No 52
>KOG1421|consensus
Probab=93.82 E-value=0.12 Score=45.82 Aligned_cols=51 Identities=24% Similarity=0.440 Sum_probs=40.6
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
.++|+|.+ .|++||+++.||+..+.+ ..++.++|-+-+ +..+.|+|.|...
T Consensus 311 L~~gpa~k--~Le~GDillavN~t~l~d--f~~l~~iLDegv--gk~l~LtI~Rggq 361 (955)
T KOG1421|consen 311 LPEGPAEK--KLEPGDILLAVNSTCLND--FEALEQILDEGV--GKNLELTIQRGGQ 361 (955)
T ss_pred ccCCchhh--ccCCCcEEEEEcceehHH--HHHHHHHHhhcc--CceEEEEEEeCCE
Confidence 36777766 699999999999988877 677888887653 7789999998643
No 53
>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]
Probab=93.08 E-value=0.32 Score=39.49 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=39.2
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
.|.|+.||.|++|||..+.+ .+|....+++. +.+..|++...|...
T Consensus 144 ~gkl~~gD~i~avdg~~f~s--~~e~i~~v~~~-k~Gd~VtI~~~r~~~ 189 (342)
T COG3480 144 KGKLEAGDTIIAVDGEPFTS--SDELIDYVSSK-KPGDEVTIDYERHNE 189 (342)
T ss_pred hceeccCCeEEeeCCeecCC--HHHHHHHHhcc-CCCCeEEEEEEeccC
Confidence 57899999999999999987 78899999876 457789999997544
No 54
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.23 Score=39.42 Aligned_cols=50 Identities=22% Similarity=0.352 Sum_probs=36.6
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
++|+|++.| |+.||.|+++||..+.+. .+-...+... ..+..+.+.+.|.
T Consensus 279 ~~spa~~ag-i~~Gdii~~vng~~v~~~--~~l~~~v~~~-~~g~~v~~~~~r~ 328 (347)
T COG0265 279 PGSPAAKAG-IKAGDIITAVNGKPVASL--SDLVAAVASN-RPGDEVALKLLRG 328 (347)
T ss_pred CCChHHHcC-CCCCCEEEEECCEEccCH--HHHHHHHhcc-CCCCEEEEEEEEC
Confidence 567777765 999999999999999884 3333334333 1366899999987
No 55
>KOG0606|consensus
Probab=92.39 E-value=0.21 Score=46.18 Aligned_cols=48 Identities=21% Similarity=0.377 Sum_probs=40.0
Q ss_pred CchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEE
Q psy1030 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53 (114)
Q Consensus 3 gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~ 53 (114)
.|..+...+|+.||.|..|||..+.++.|.|.+++|-+. +..|.+.+.
T Consensus 667 egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~---gn~v~~~tt 714 (1205)
T KOG0606|consen 667 EGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKS---GNKVTLRTT 714 (1205)
T ss_pred CCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhc---CCeeEEEee
Confidence 344455678999999999999999999999999999975 667777664
No 56
>KOG1738|consensus
Probab=91.07 E-value=0.33 Score=42.32 Aligned_cols=54 Identities=26% Similarity=0.308 Sum_probs=47.1
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
+++.+|.+...|..||.+++||+.-+.+-.+.-.++-|+.. ..-|.|+|.++..
T Consensus 233 ~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~---~sgi~l~lkKrp~ 286 (638)
T KOG1738|consen 233 FEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRET---PAGIELTLKKRPV 286 (638)
T ss_pred ccCChHHHhhcccCccceeeecccccccchhHhHHhhcccC---cccceeeeeccCC
Confidence 36789999999999999999999999999999999999987 6777888877633
No 57
>KOG3129|consensus
Probab=90.40 E-value=0.85 Score=35.13 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=34.1
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
|+++|++ ++|+.||.|+++.++.-.+..--+-+..+.... ....+.++|.|...
T Consensus 148 ~~SPA~~-aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~-e~~~v~v~v~R~g~ 201 (231)
T KOG3129|consen 148 PGSPADE-AGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSN-EDQIVSVTVIREGQ 201 (231)
T ss_pred CCChhhh-hCcccCceEEEecccccccchhHHHHHHHHHhc-cCcceeEEEecCCC
Confidence 5667766 559999999998777666554233333333221 24578888887643
No 58
>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous. GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.
Probab=89.71 E-value=0.7 Score=32.85 Aligned_cols=50 Identities=20% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCCchhhhcCCCCC-CCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEP-GDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~-GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.|+++|+..| |++ .|.|+.+++..+.+. ++-.++++.. ....+.|.|...
T Consensus 51 ~p~SPA~~AG-L~p~~DyIig~~~~~l~~~--~~l~~~v~~~--~~~~l~L~Vyns 101 (138)
T PF04495_consen 51 APNSPAAKAG-LEPFFDYIIGIDGGLLDDE--DDLFELVEAN--ENKPLQLYVYNS 101 (138)
T ss_dssp -TTSHHHHTT---TTTEEEEEETTCE--ST--CHHHHHHHHT--TTS-EEEEEEET
T ss_pred cCCCHHHHCC-ccccccEEEEccceecCCH--HHHHHHHHHc--CCCcEEEEEEEC
Confidence 3788898887 887 699999999888853 4556666654 366899999865
No 59
>KOG1320|consensus
Probab=86.81 E-value=1.5 Score=37.25 Aligned_cols=51 Identities=16% Similarity=0.325 Sum_probs=36.2
Q ss_pred CCCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 1 i~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+|++++.. +.+.+||+|..|||+.+.|+.| ..++++.+. .+..|.+..+|.
T Consensus 406 lp~~~~~~-~~~~~g~~V~~vng~~V~n~~~--l~~~i~~~~-~~~~v~vl~~~~ 456 (473)
T KOG1320|consen 406 LPGSINGG-YGLKPGDQVVKVNGKPVKNLKH--LYELIEECS-TEDKVAVLDRRS 456 (473)
T ss_pred ccCCCccc-ccccCCCEEEEECCEEeechHH--HHHHHHhcC-cCceEEEEEecC
Confidence 35555554 5699999999999999999755 677777762 234666655554
No 60
>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]
Probab=86.09 E-value=0.27 Score=42.22 Aligned_cols=22 Identities=41% Similarity=0.789 Sum_probs=19.6
Q ss_pred CCchhhhcCCCCCCCEEEEECCE
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDI 24 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~ 24 (114)
++|+|.+.| |.+||.|+.|||.
T Consensus 471 ~~gPA~~AG-l~~Gd~ivai~G~ 492 (558)
T COG3975 471 PGGPAYKAG-LSPGDKIVAINGI 492 (558)
T ss_pred CCChhHhcc-CCCccEEEEEcCc
Confidence 678888765 9999999999999
No 61
>PF12812 PDZ_1: PDZ-like domain
Probab=85.41 E-value=1.8 Score=27.81 Aligned_cols=38 Identities=29% Similarity=0.535 Sum_probs=31.5
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.+|..+..+++..|-.|.+|||+...+ .++-++++|+.
T Consensus 38 ~~g~~~~~~~i~~g~iI~~Vn~kpt~~--Ld~f~~vvk~i 75 (78)
T PF12812_consen 38 SGGSLAFAGGISKGFIITSVNGKPTPD--LDDFIKVVKKI 75 (78)
T ss_pred cCCChhhhCCCCCCeEEEeECCcCCcC--HHHHHHHHHhC
Confidence 356667777799999999999999998 57788888876
No 62
>KOG3532|consensus
Probab=83.45 E-value=2.8 Score=37.64 Aligned_cols=50 Identities=20% Similarity=0.504 Sum_probs=38.1
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCC
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~ 57 (114)
++.+|.+. .+.+||.+++|||++++. -.++.+.++.. .+.|...+.+..+
T Consensus 407 ~ns~a~k~-~~~~gdvlvai~~~pi~s--~~q~~~~~~s~---~~~~~~l~~~~~~ 456 (1051)
T KOG3532|consen 407 DNSLADKA-AFKPGDVLVAINNVPIRS--ERQATRFLQST---TGDLTVLVERSLD 456 (1051)
T ss_pred CCChhhHh-cCCCcceEEEecCccchh--HHHHHHHHHhc---ccceEEEEeeccc
Confidence 45566665 489999999999999986 67899999987 6666666655433
No 63
>KOG4371|consensus
Probab=79.80 E-value=1.9 Score=40.08 Aligned_cols=43 Identities=33% Similarity=0.379 Sum_probs=39.1
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
--|++||.++-+||+-+++--|.+++..+++- +..|.|-|.|.
T Consensus 1185 pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~---~~~~~~~~~r~ 1227 (1332)
T KOG4371|consen 1185 PDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGG---GDRVVLGVQRP 1227 (1332)
T ss_pred CCcchhhhhhhccceeeechhhHHHHHHHhcc---CceEEEEeecC
Confidence 45889999999999999999999999999986 67899999986
No 64
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=73.23 E-value=8.9 Score=28.38 Aligned_cols=38 Identities=34% Similarity=0.472 Sum_probs=33.4
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEE
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 49 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~ 49 (114)
.|.+..||+++-|+++--++-|-.+++++++++ +..|.
T Consensus 116 ~g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~---Ga~V~ 153 (187)
T PRK13810 116 VGDLKPEDRIVMLEDVTTSGGSVREAIEVVREA---GAYIK 153 (187)
T ss_pred EccCCCcCEEEEEEeccCCChHHHHHHHHHHHC---CCEEE
Confidence 467889999999999999999999999999998 55443
No 65
>PTZ00173 60S ribosomal protein L10; Provisional
Probab=62.05 E-value=17 Score=27.89 Aligned_cols=47 Identities=28% Similarity=0.494 Sum_probs=34.6
Q ss_pred hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC-CCcEEEEEEecCC
Q psy1030 8 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 57 (114)
Q Consensus 8 ~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~-~~~V~L~V~r~~~ 57 (114)
...++++|+.|++|.+.+ .+.+.|.+.|+.+..+ +...++.+.+.|.
T Consensus 125 ~vArVk~Gqiifei~~~~---~~~~~AkeALrrA~~KlP~~~kIv~~~~wg 172 (213)
T PTZ00173 125 TCARVRIGQILLSIRTKE---AYVPQAIEALRRAKYKFPGRQKIVVSNKWG 172 (213)
T ss_pred EEEEECcCCEEEEEeccc---CCHHHHHHHHHHhcccCCCeEEEEEecccC
Confidence 345689999999997744 4677888999876432 5577888887765
No 66
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=61.75 E-value=20 Score=27.12 Aligned_cols=39 Identities=28% Similarity=0.331 Sum_probs=33.5
Q ss_pred hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEE
Q psy1030 8 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 49 (114)
Q Consensus 8 ~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~ 49 (114)
..|....|++++-|+++-.++-|--+|+++|++. +..|.
T Consensus 105 ieG~~~~G~kVvvVEDViTTG~Si~eai~~l~~~---G~~V~ 143 (201)
T COG0461 105 IEGGEVKGEKVVVVEDVITTGGSILEAVEALREA---GAEVV 143 (201)
T ss_pred eEecCCCCCEEEEEEecccCCHhHHHHHHHHHHc---CCeEE
Confidence 3566778999999999999999999999999997 66543
No 67
>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]
Probab=61.15 E-value=39 Score=26.70 Aligned_cols=46 Identities=26% Similarity=0.453 Sum_probs=30.8
Q ss_pred chhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCc---EEEEEEe
Q psy1030 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP---IKLVVAK 54 (114)
Q Consensus 4 G~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~---V~L~V~r 54 (114)
++++. ..|++||+++++|+..+... ++..+.+.... +.. +.+.+.|
T Consensus 140 s~a~~-a~l~~Gd~iv~~~~~~i~~~--~~~~~~~~~~~--~~~~~~~~i~~~~ 188 (375)
T COG0750 140 SAAAL-AGLRPGDRIVAVDGEKVASW--DDVRRLLVAAA--GDVFNLLTILVIR 188 (375)
T ss_pred CHHHH-cCCCCCCEEEeECCEEccCH--HHHHHHHHhcc--CCcccceEEEEEe
Confidence 34444 45999999999999999884 44444444331 233 6777777
No 68
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=59.04 E-value=21 Score=30.44 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=35.0
Q ss_pred hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEE
Q psy1030 8 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLV 51 (114)
Q Consensus 8 ~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~ 51 (114)
..|.+..||+++-|+++-.++-|-.+++++|+++ +..|.-.
T Consensus 386 ieG~~~~G~rVlIVDDViTTGgSi~eaie~l~~a---G~~V~~v 426 (477)
T PRK05500 386 IEGNFHPGETVVVVDDILITGKSVMEGAEKLKSA---GLNVRDI 426 (477)
T ss_pred EecCCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEEEEE
Confidence 3567889999999999999999999999999997 5654433
No 69
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=57.98 E-value=22 Score=26.28 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=31.8
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEE
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 49 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~ 49 (114)
.+..||+++-|+++--++-|...++++++++ +..|.
T Consensus 113 ~l~~G~rVLIVDDvvtTGgT~~a~~~ll~~a---Ga~Vv 148 (191)
T TIGR01744 113 FLSDQDRVLIIDDFLANGQAAHGLVDIAKQA---GAKIA 148 (191)
T ss_pred hCCCcCEEEEEEehhccChHHHHHHHHHHHC---CCEEE
Confidence 4779999999999999999999999999998 55533
No 70
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=55.72 E-value=29 Score=25.29 Aligned_cols=33 Identities=33% Similarity=0.590 Sum_probs=30.9
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|.+..|+.++-|+++--++-|..+++++|+++
T Consensus 101 ~g~~~~g~~VlIVDDvitTG~Tl~~~~~~l~~~ 133 (176)
T PRK13812 101 EGRLDEGEEVVVLEDIATTGQSAVDAVEALREA 133 (176)
T ss_pred EecCCCcCEEEEEEEeeCCCHHHHHHHHHHHHC
Confidence 467889999999999999999999999999987
No 71
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=55.70 E-value=28 Score=26.13 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=30.6
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|.+..|+.++-|+++-.++-|-.+++++|+++
T Consensus 112 ~g~~~~g~~VlIVDDViTTG~Ti~~a~~~L~~~ 144 (206)
T PRK13809 112 EGLFTPGQTCLVINDMVSSGKSIIETAVALEEE 144 (206)
T ss_pred ccccCCCCEEEEEEeccccCHHHHHHHHHHHHC
Confidence 456789999999999999999999999999987
No 72
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=54.40 E-value=24 Score=26.12 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEE
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIK 49 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~ 49 (114)
.+..||+++-|+++--++-|...++++++++ +..|.
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~a---Ga~vv 148 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQA---GAKVA 148 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHC---CCEEE
Confidence 5789999999999999999999999999998 65543
No 73
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=54.14 E-value=29 Score=24.93 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=29.8
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
|.+..|+.++-|+++--++-|..+|+++|+++
T Consensus 103 g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~ 134 (173)
T TIGR00336 103 GELLEGDKVVVVEDVITTGTSILEAVEIIQAA 134 (173)
T ss_pred cCCCCCCEEEEEeccccChHHHHHHHHHHHHc
Confidence 45778999999999999999999999999987
No 74
>TIGR01164 rplP_bact ribosomal protein L16, bacterial/organelle. This model describes bacterial and organellar ribosomal protein L16. The homologous protein of the eukaryotic cytosol is designated L10
Probab=53.75 E-value=15 Score=25.67 Aligned_cols=32 Identities=13% Similarity=0.320 Sum_probs=25.5
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+..-..++.+|+.|+++.+ ++.+.|.+.|+.+
T Consensus 89 ~~~~varV~~G~ilfEi~~-----~~~~~a~~al~~a 120 (126)
T TIGR01164 89 PEYWVAVVKPGKILFEIAG-----VPEEVAREAFRLA 120 (126)
T ss_pred CCEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHH
Confidence 3344567899999999987 5678899999876
No 75
>PLN02293 adenine phosphoribosyltransferase
Probab=53.16 E-value=32 Score=25.37 Aligned_cols=32 Identities=25% Similarity=0.437 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+.+..|++++-|+++--++-|...++++|+++
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~ 151 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERA 151 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHC
Confidence 56789999999999999999999999999998
No 76
>PRK09203 rplP 50S ribosomal protein L16; Reviewed
Probab=52.90 E-value=15 Score=26.02 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=26.2
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 42 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~ 42 (114)
+..-..++.+|+.|+++.+ ++.+.|.+.|+.+.
T Consensus 90 ~~~~varVk~G~iifEi~~-----~~~~~a~~al~~a~ 122 (138)
T PRK09203 90 PEYWVAVVKPGRILFEIAG-----VSEELAREALRLAA 122 (138)
T ss_pred CcEEEEEECCCCEEEEEeC-----CCHHHHHHHHHHHh
Confidence 3444567899999999988 56788999999874
No 77
>PRK04199 rpl10e 50S ribosomal protein L10e; Reviewed
Probab=51.86 E-value=41 Score=24.98 Aligned_cols=47 Identities=32% Similarity=0.439 Sum_probs=30.8
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC-CCcEEEEEEe
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAK 54 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~-~~~V~L~V~r 54 (114)
+.....++++|+.|+++.++ +.+.+.|.+.|+.+.++ +....+.+.+
T Consensus 119 p~~wva~Vk~G~ilfei~~~---~~~~~~akeAlr~a~~KLP~k~kiv~~~ 166 (172)
T PRK04199 119 PVGTAARVEKGQKIFTVRVN---PEHLEAAKEALRRAAMKLPTPCRIVVEK 166 (172)
T ss_pred ccEEEEEECcCCEEEEEEec---CCCHHHHHHHHHHhhccCCCcEEEEEec
Confidence 33444578999999999764 33567788888876432 3345555544
No 78
>cd01433 Ribosomal_L16_L10e Ribosomal_L16_L10e: L16 is an essential protein in the large ribosomal subunit of bacteria, mitochondria, and chloroplasts. Large subunits that lack L16 are defective in peptidyl transferase activity, peptidyl-tRNA hydrolysis activity, association with the 30S subunit, binding of aminoacyl-tRNA and interaction with antibiotics. L16 is required for the function of elongation factor P (EF-P), a protein involved in peptide bond synthesis through the stimulation of peptidyl transferase activity by the ribosome. Mutations in L16 and the adjoining bases of 23S rRNA confer antibiotic resistance in bacteria, suggesting a role for L16 in the formation of the antibiotic binding site. The GTPase RbgA (YlqF) is essential for the assembly of the large subunit, and it is believed to regulate the incorporation of L16. L10e is the archaeal and eukaryotic cytosolic homolog of bacterial L16. L16 and L10e exhibit structural differences at the N-terminus.
Probab=49.64 E-value=16 Score=24.63 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=27.0
Q ss_pred chhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 4 G~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.+.....++.+|+.|+++.+.+. .+.|.+.|+.+
T Consensus 68 ~~~~~~a~v~~G~iifEi~~~~~----~~~~~~alk~a 101 (112)
T cd01433 68 KPEGWVARVKPGQILFEVRGVPE----EEVAKEALRRA 101 (112)
T ss_pred CccEEEEEECCCCEEEEEeCcCc----HHHHHHHHHHh
Confidence 34445568999999999988765 77888999877
No 79
>KOG4407|consensus
Probab=48.86 E-value=19 Score=34.87 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=41.6
Q ss_pred CCchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 2 ~gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
+.|++... .||-||+++.||...+-++...+++..+++. ...+.|.|..
T Consensus 152 ~n~~~~~a-~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt---~~~~~~~~~P 200 (1973)
T KOG4407|consen 152 ANGPAHYA-NLQTGDRVLMVNNQPIAGIAYSTIVSMIKQT---PAVLTLHVVP 200 (1973)
T ss_pred cCChhHHH-hhhccceeEEeecCcccchhhhhhhhhhccC---CCCCCceecc
Confidence 55666664 5999999999999999999999999999987 6777777764
No 80
>KOG1421|consensus
Probab=46.25 E-value=13 Score=33.64 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCCCCEEEEECCEECCCCCHHH
Q psy1030 12 IEPGDMILQVNDINFENMSNDE 33 (114)
Q Consensus 12 L~~GD~Il~VNg~~l~~~s~~e 33 (114)
|..||.||+|||+.++.++--+
T Consensus 786 l~~gdiilsvngk~itr~~dl~ 807 (955)
T KOG1421|consen 786 LGVGDIILSVNGKMITRLSDLH 807 (955)
T ss_pred cccccEEEEecCeEEeeehhhh
Confidence 8899999999999998876544
No 81
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=43.37 E-value=24 Score=21.99 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=24.2
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLRE 40 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~ 40 (114)
.+++||-+|-=.|.-++.++-++|.+.|.-
T Consensus 37 ~v~~Gd~VLVHaG~Ai~~ideeeA~e~l~~ 66 (68)
T PF01455_consen 37 DVKVGDYVLVHAGFAIEKIDEEEAEETLDL 66 (68)
T ss_dssp SB-TT-EEEEETTEEEEEE-HHHHHHHHHH
T ss_pred CCCCCCEEEEecChhheeCCHHHHHHHHHH
Confidence 378999999999999999999999998863
No 82
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=43.04 E-value=59 Score=23.83 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=31.0
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcE
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 48 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V 48 (114)
.+..|+.++-|+++--++-|-..++++|+++ +..+
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~a---Ga~v 144 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENS---GGIV 144 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHC---CCEE
Confidence 3678999999999999999999999999998 5553
No 83
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=41.27 E-value=59 Score=24.13 Aligned_cols=48 Identities=31% Similarity=0.383 Sum_probs=31.9
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC-CCcEEEEEEec
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKC 55 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~-~~~V~L~V~r~ 55 (114)
+.....++++|..|+++.++. -+.+.|.+.|+.+.++ +....+.+.+.
T Consensus 119 p~~wvArVk~Gqiifei~~~~---~~~~~AkeAlr~A~~KLP~~~kiv~~~~ 167 (172)
T TIGR00279 119 PVGTAARVKIGQKIFSVWTKP---SNFDVAKEALRRAAMKFPVPCKIVIEKG 167 (172)
T ss_pred ccEEEEEECcCCEEEEEEeec---CCHHHHHHHHHHHhccCCCcEEEEEecC
Confidence 333445689999999998764 2467788888876432 34556665543
No 84
>CHL00044 rpl16 ribosomal protein L16
Probab=41.26 E-value=19 Score=25.46 Aligned_cols=33 Identities=9% Similarity=0.239 Sum_probs=25.0
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 42 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~ 42 (114)
+..-..++++|+.|+++.|++ .+.|.++|+.+.
T Consensus 90 ~~~~va~V~~G~ilfEi~g~~-----~~~ak~al~~a~ 122 (135)
T CHL00044 90 PEYWVAVVKPGRILYEMGGVS-----ETIARAAIKIAA 122 (135)
T ss_pred ccEEEEEECCCcEEEEEeCCC-----HHHHHHHHHHHh
Confidence 334456789999999998854 367889998773
No 85
>KOG4371|consensus
Probab=38.76 E-value=28 Score=32.88 Aligned_cols=49 Identities=18% Similarity=0.439 Sum_probs=41.7
Q ss_pred chhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 4 G~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.+|.-.|.+++||++..-+|.++.+.+-.+.++-++-. .+++.+++.+.
T Consensus 1281 ~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v---~~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1281 SAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLV---QGPVQITVTRE 1329 (1332)
T ss_pred ccccccccccccceeeccCCccCCCCChHHHHHHhhhc---cCchhheehhh
Confidence 35666789999999999999999999998888888855 78888888764
No 86
>PRK06031 phosphoribosyltransferase; Provisional
Probab=38.28 E-value=65 Score=24.71 Aligned_cols=30 Identities=17% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 12 L~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+..|++++-|+++--++-|...++++|+++
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~ 180 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAAC 180 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHc
Confidence 458999999999999999999999999988
No 87
>cd01674 Homoaconitase_Swivel Homoaconitase swivel domain. This family includes homoaconitase and other uncharacterized proteins of the Aconitase family. Homoaconitase is part of an unusual lysine biosynthesis pathway found only in filamentous fungi, in which lysine is synthesized via the alpha-aminoadipate pathway. In this pathway, homoaconitase catalyzes the conversion of cis-homoaconitic acid into homoisocitric acid. The reaction mechanism is believed to be similar to that of other aconitases. This is the swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism.
Probab=37.66 E-value=82 Score=22.35 Aligned_cols=40 Identities=30% Similarity=0.470 Sum_probs=30.4
Q ss_pred cCCCCCCCEEEEECCEEC-CCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 9 DGRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l-~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
..++++||.| |-|.++ .+-|+++|+..|+.+ -|..+|++.
T Consensus 40 ~~~v~~gdil--VaG~nFG~GSSRE~A~~al~~~-----Gi~~VIA~S 80 (129)
T cd01674 40 STKTKQGDIL--VSGFNFGTGSSREQAATALLAK-----GIPLVVSGS 80 (129)
T ss_pred hhcCCCCCEE--EeCCccCCCCcHHHHHHHHHHc-----CccEEEech
Confidence 3568899977 567777 688999999999986 345666653
No 88
>PRK09213 pur operon repressor; Provisional
Probab=37.64 E-value=84 Score=24.76 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=29.4
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|..|++++-|+++--++-|...++++++++
T Consensus 192 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~ 222 (271)
T PRK09213 192 SLKEGSRVLIVDDFMKAGGTINGMISLLKEF 222 (271)
T ss_pred hcCCcCEEEEEeeecccCHhHHHHHHHHHHC
Confidence 4779999999999999999999999999998
No 89
>COG0197 RplP Ribosomal protein L16/L10E [Translation, ribosomal structure and biogenesis]
Probab=34.77 E-value=17 Score=26.37 Aligned_cols=33 Identities=18% Similarity=0.461 Sum_probs=24.4
Q ss_pred hhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy1030 5 AVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 42 (114)
Q Consensus 5 ~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~ 42 (114)
+..-..++++|..|++|.|++ -+.|.+.|+.+.
T Consensus 93 pegwaArVkpG~vlfei~g~~-----e~~A~EAlr~Aa 125 (146)
T COG0197 93 PEGWAARVKPGRVLFEIAGVP-----EELAREALRRAA 125 (146)
T ss_pred ccEEEEEecCCcEEEEEecCc-----HHHHHHHHHHHh
Confidence 333445799999999998866 334888888773
No 90
>KOG1712|consensus
Probab=34.62 E-value=68 Score=23.98 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.8
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.+.+++|++.+-|++.--++=|..-|.++|.+.
T Consensus 116 ~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ 148 (183)
T KOG1712|consen 116 KGAIKPGQRVVVVDDLLATGGTLAAATELLERV 148 (183)
T ss_pred ccccCCCCeEEEEechhhcCccHHHHHHHHHHh
Confidence 467999999999999999999999999999998
No 91
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=34.55 E-value=84 Score=22.42 Aligned_cols=31 Identities=29% Similarity=0.532 Sum_probs=28.5
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.+..|+.++-|+++--++-|..++.++|+++
T Consensus 110 ~~~~g~~VLIVDDivtTG~Tl~~~~~~l~~~ 140 (175)
T PRK02304 110 AIKPGDRVLIVDDLLATGGTLEAAIKLLERL 140 (175)
T ss_pred hcCCCCEEEEEeCCccccHHHHHHHHHHHHc
Confidence 3567999999999999999999999999987
No 92
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=33.94 E-value=79 Score=22.47 Aligned_cols=30 Identities=23% Similarity=0.475 Sum_probs=27.9
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 12 L~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+..|+.++-|+++--+|-|..++.+.|+++
T Consensus 106 ~~~gk~VLIVDDIitTG~Tl~~a~~~L~~~ 135 (169)
T TIGR01090 106 IKPGQRVLIVDDLLATGGTAEATDELIRKL 135 (169)
T ss_pred cCCcCEEEEEeccccchHHHHHHHHHHHHc
Confidence 458899999999999999999999999987
No 93
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=33.39 E-value=97 Score=24.41 Aligned_cols=31 Identities=16% Similarity=0.315 Sum_probs=29.3
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|..|++++-|+++--++-|...++++++++
T Consensus 190 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~ 220 (268)
T TIGR01743 190 SLKTGSKVLIIDDFMKAGGTINGMINLLDEF 220 (268)
T ss_pred hCCCcCEEEEEeeecccCHHHHHHHHHHHHC
Confidence 4788999999999999999999999999988
No 94
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=32.60 E-value=1e+02 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=27.7
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 12 L~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
...|+.++-|+++--++-|..++++.|++.
T Consensus 137 ~~~gk~VlIVDDVitTG~Tl~~ai~~l~~~ 166 (200)
T PRK02277 137 SVEGKRCVIVDDVITSGTTMKETIEYLKEH 166 (200)
T ss_pred cCCcCEEEEEeeccCchHHHHHHHHHHHHc
Confidence 357999999999999999999999999987
No 95
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=32.43 E-value=71 Score=20.42 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=27.1
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHh
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLRE 40 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~ 40 (114)
+..++||-+|-=.|.-++.++-++|.+.|.-
T Consensus 34 ~~~~vGD~VLVH~G~Ai~~ide~eA~e~l~~ 64 (76)
T TIGR00074 34 GEVKVGDYVLVHVGFAISVLDEEEARETLDA 64 (76)
T ss_pred CCCCCCCEEEEecChhhhhCCHHHHHHHHHH
Confidence 4578999999889999999999999888764
No 96
>KOG0708|consensus
Probab=31.70 E-value=51 Score=27.26 Aligned_cols=32 Identities=16% Similarity=0.265 Sum_probs=28.4
Q ss_pred EECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 20 QVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 20 ~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
.+||++..+.+|+++...++.+ +..+.+++.-
T Consensus 2 ~~~~~~~~~~~~~~~a~~l~~s---g~~~~i~~q~ 33 (359)
T KOG0708|consen 2 SVNGVDGRNATHEDAAAALKTS---GDSVYIRAQY 33 (359)
T ss_pred cccccccccchHHHHHHHhhcC---CCceEEEEEe
Confidence 5899999999999999999998 7888888853
No 97
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=31.68 E-value=85 Score=20.32 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=29.2
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
....-.|..++=|+++--+|-|..++.+.|++.
T Consensus 82 ~~~~~~gk~vliVDDvi~tG~Tl~~~~~~L~~~ 114 (125)
T PF00156_consen 82 DKEDIKGKRVLIVDDVIDTGGTLKEAIELLKEA 114 (125)
T ss_dssp ESSSGTTSEEEEEEEEESSSHHHHHHHHHHHHT
T ss_pred ccccccceeEEEEeeeEcccHHHHHHHHHHHhC
Confidence 344557899999999999999999999999987
No 98
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=30.90 E-value=85 Score=22.87 Aligned_cols=36 Identities=19% Similarity=0.367 Sum_probs=31.9
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcE
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPI 48 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V 48 (114)
..|..||+++-|++.--++=|-.-..++++++ +..|
T Consensus 111 ~~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~---ga~v 146 (179)
T COG0503 111 DALKPGDRVLIVDDLLATGGTALALIELLEQA---GAEV 146 (179)
T ss_pred hhCCCCCEEEEEecchhcChHHHHHHHHHHHC---CCEE
Confidence 45789999999999999999999999999998 5543
No 99
>PRK06388 amidophosphoribosyltransferase; Provisional
Probab=30.74 E-value=91 Score=26.49 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=33.2
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.|..|+-|+++-.++.|..+++++|+++ .-..|.+.+...
T Consensus 355 ~gk~VlLVDDsittGtTl~~~~~~L~~a--Gak~V~~ri~sP 394 (474)
T PRK06388 355 SGKRIVLVDDSIVRGNTMRFIVKIMRKY--GAKEVHVRIGSP 394 (474)
T ss_pred cCceEEEEeCeECcHHHHHHHHHHHHHc--CCCEEEEEeCCC
Confidence 5888999999999999999999999998 234677777644
No 100
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=30.34 E-value=1.1e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=29.2
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|..|++++-|+++--+|-|...+++++++.
T Consensus 172 ~l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ 202 (238)
T PRK08558 172 ALKKGDRVLIVDDIIRSGETQRALLDLARQA 202 (238)
T ss_pred HcCCcCEEEEEecccccCHHHHHHHHHHHHc
Confidence 3788999999999999999999999999998
No 101
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=30.30 E-value=1.8e+02 Score=20.98 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=32.6
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCc-EE-EEEEecCC
Q psy1030 13 EPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IK-LVVAKCWD 57 (114)
Q Consensus 13 ~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~-V~-L~V~r~~~ 57 (114)
..|+.++-|+++--++-|..++.++|+++ +.. |. +++.+...
T Consensus 118 ~~gk~VLIVDDiitTG~Tl~aa~~~L~~~---GA~~V~~~~v~~~~~ 161 (178)
T PRK07322 118 LKGKRVAIVDDVVSTGGTLTALERLVERA---GGQVVAKAAIFAEGD 161 (178)
T ss_pred cCCCEEEEEeccccccHHHHHHHHHHHHc---CCEEEEEEEEEEcCC
Confidence 36899999999999999999999999987 443 33 34545433
No 102
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=30.00 E-value=54 Score=20.57 Aligned_cols=22 Identities=9% Similarity=0.317 Sum_probs=15.1
Q ss_pred ECCEECCCCCHHHHHHHHHhcc
Q psy1030 21 VNDINFENMSNDEAVRVLREVV 42 (114)
Q Consensus 21 VNg~~l~~~s~~eAv~~Lr~~~ 42 (114)
+..+.+.|+|.+|+.+.|++..
T Consensus 46 iG~v~v~G~T~~e~~~~I~~~l 67 (82)
T PF02563_consen 46 IGPVKVAGLTLEEAEEEIKQRL 67 (82)
T ss_dssp TEEEE-TT--HHHHHHHHHHHH
T ss_pred cceEEECCCCHHHHHHHHHHHH
Confidence 4557788999999999998764
No 103
>PRK06781 amidophosphoribosyltransferase; Provisional
Probab=29.57 E-value=1.3e+02 Score=25.51 Aligned_cols=40 Identities=20% Similarity=0.357 Sum_probs=33.2
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.|-.|+-|+++-.++.|..+++++|+++ .-..|.+.|...
T Consensus 347 ~gk~VlLVDDvittGtTl~~~~~~Lk~a--GA~eV~v~i~sP 386 (471)
T PRK06781 347 EGKRVVMIDDSIVRGTTSKRIVRMLREA--GATEVHVRIASP 386 (471)
T ss_pred CCceEEEEeceeccchHHHHHHHHHHHc--CCcEEEEEECCC
Confidence 4778999999999999999999999998 234677777654
No 104
>KOG0174|consensus
Probab=28.86 E-value=65 Score=24.74 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=26.9
Q ss_pred ECCEECCCCCHHHHHHHHHhccC--------CCCcEEEEEEec
Q psy1030 21 VNDINFENMSNDEAVRVLREVVQ--------KPGPIKLVVAKC 55 (114)
Q Consensus 21 VNg~~l~~~s~~eAv~~Lr~~~~--------~~~~V~L~V~r~ 55 (114)
++-.-..||+.+|+++++++++. +++.|+|.+...
T Consensus 158 ~D~~~r~nMt~EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~ 200 (224)
T KOG0174|consen 158 CDANWRPNMTLEECVRFVKNAVSLAIERDGSSGGVIRLVIINK 200 (224)
T ss_pred ehhhcCCCCCHHHHHHHHHHHHHHHHhccCCCCCEEEEEEEcc
Confidence 33344589999999999998763 688899988643
No 105
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=27.68 E-value=1.3e+02 Score=21.75 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=25.2
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|-.|+-|+++-.+|.|..++.+.|+++
T Consensus 151 ~~~~vllvDDV~TTGaTl~~~~~~L~~~ 178 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGATLHEIARLLLEL 178 (190)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHHc
Confidence 3567888999999999999999999986
No 106
>COG4422 Bacteriophage protein gp37 [Function unknown]
Probab=27.10 E-value=1.3e+02 Score=23.08 Aligned_cols=64 Identities=25% Similarity=0.395 Sum_probs=41.9
Q ss_pred ECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEecCCCCCCC--C----CcC---CCCCCCCCCChhhHhhhhhhhh
Q psy1030 21 VNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKG--Y----FTI---PRTEPVRPIDPGAWVAHTAAIR 88 (114)
Q Consensus 21 VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~~~~~~~~--~----~~~---pr~~~~~P~d~~~~~~~~~a~~ 88 (114)
.-|.++++...-+-++-||+. +..|++.-.........+ . +.+ .+....||+|| .|+.|+..|-
T Consensus 140 WlGtSvEn~~v~~Rid~LRqV---PAavRFvS~EPLiGsv~g~~L~~I~WaIvGGESGp~aR~idp-~WvdeI~~~C 212 (250)
T COG4422 140 WLGTSVENVRVFRRIDDLRQV---PAAVRFVSFEPLIGSVDGINLTNIHWAIVGGESGPNARPIDP-QWVDEIEDMC 212 (250)
T ss_pred eeeceechhHHHHHHHHHhcC---chheEEeeccccccccccccccceeEEEecCcCCCCCCCCCH-HHHHHHHHHH
Confidence 357888888888888889988 677777665543332211 1 111 24556799987 5999987663
No 107
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=26.50 E-value=1.3e+02 Score=21.58 Aligned_cols=29 Identities=24% Similarity=0.259 Sum_probs=27.5
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 13 EPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 13 ~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
..|+.++-|+++--++-|-.+++++|+++
T Consensus 102 ~~g~~VlIVDDvi~TG~T~~~~~~~l~~~ 130 (170)
T PRK13811 102 VKGKRVLLVEDVTTSGGSALYGIEQLRAA 130 (170)
T ss_pred cCCCEEEEEEecccccHHHHHHHHHHHHC
Confidence 47999999999999999999999999998
No 108
>KOG2921|consensus
Probab=26.21 E-value=45 Score=28.27 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=17.6
Q ss_pred CCCCCCEEEEECCEECCCC
Q psy1030 11 RIEPGDMILQVNDINFENM 29 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~ 29 (114)
+|++||+|.++||..+.+.
T Consensus 238 GL~vgdvitsldgcpV~~v 256 (484)
T KOG2921|consen 238 GLSVGDVITSLDGCPVHKV 256 (484)
T ss_pred cCCccceEEecCCcccCCH
Confidence 6999999999999999885
No 109
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=26.07 E-value=1.4e+02 Score=22.51 Aligned_cols=44 Identities=27% Similarity=0.317 Sum_probs=30.9
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
+.......|+=|+++-.+|.|..++.+.|++.. ....-.++++|
T Consensus 179 ~~~~~~~~vlLvDDV~TTGaTl~~~~~~L~~~G-a~~v~~~~lar 222 (225)
T COG1040 179 KGIEEPKNVLLVDDVYTTGATLKEAAKLLREAG-AKRVFVLTLAR 222 (225)
T ss_pred CCCCCCCeEEEEecccccHHHHHHHHHHHHHcC-CceEEEEEEEe
Confidence 334444567789999999999999999999871 12234444454
No 110
>PF00252 Ribosomal_L16: Ribosomal protein L16p/L10e; InterPro: IPR016180 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a structural domain with an alpha/beta-hammerhead fold, where the beta-hammerhead motif is similar to that in barrel-sandwich hybrids. Domains of this structure can be found in ribosomal proteins L10e and L16. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2ZJR_J 1Y69_K 3DLL_J 2ZJQ_J 2ZJP_J 3PIO_J 3CF5_J 3PIP_J 2ZKR_h 3J11_O ....
Probab=26.03 E-value=37 Score=23.70 Aligned_cols=31 Identities=23% Similarity=0.579 Sum_probs=23.9
Q ss_pred hcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcc
Q psy1030 8 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV 42 (114)
Q Consensus 8 ~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~ 42 (114)
...++.+|..|++++| +++.++|.++|+.+.
T Consensus 92 ~~a~V~~G~iifEi~~----~v~~~~a~~alk~a~ 122 (133)
T PF00252_consen 92 WVARVKPGQIIFEIGG----KVNEEEAKEALKRAA 122 (133)
T ss_dssp EEEEESTTEEEEEEES----GSCHHHHHHHHHHHH
T ss_pred EEEEECCCcEEEEECC----cCCHHHHHHHHHHHH
Confidence 3456889999999943 256789999999773
No 111
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=25.53 E-value=1.4e+02 Score=21.80 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=28.0
Q ss_pred CCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 12 IEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 12 L~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+..|+.++-|+++--++-|..+++++|++.
T Consensus 102 l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~ 131 (187)
T TIGR01367 102 VKPGEKFVAVEDVVTTGGSLLEAIRAIEGQ 131 (187)
T ss_pred CCCCCEEEEEEeeecchHHHHHHHHHHHHc
Confidence 567999999999999999999999999987
No 112
>PRK10413 hydrogenase 2 accessory protein HypG; Provisional
Probab=25.50 E-value=1e+02 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=26.5
Q ss_pred CCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 11 RIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 11 rL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.+++||-+|-=.|.-++.++-++|.+.|.-.
T Consensus 42 ~~~vGDyVLVHaGfAi~~ideeeA~etl~~l 72 (82)
T PRK10413 42 ADLLGQWVLVHVGFAMSIIDEDEAKATLDAL 72 (82)
T ss_pred ccccCCEEEEecchhhhhCCHHHHHHHHHHH
Confidence 3678999998889999999999998887643
No 113
>KOG3834|consensus
Probab=24.65 E-value=1e+02 Score=26.24 Aligned_cols=49 Identities=22% Similarity=0.252 Sum_probs=32.3
Q ss_pred CchhhhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 3 gG~Aa~~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
+.++.+.|-.---|.|.+|||..+.+- .+.-..+||.. -..|+|+|...
T Consensus 25 dSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~---sekVkltv~n~ 73 (462)
T KOG3834|consen 25 DSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKAN---SEKVKLTVYNS 73 (462)
T ss_pred CChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhc---ccceEEEEEec
Confidence 346666665555699999999998763 44444555544 23499998743
No 114
>TIGR02087 LEUD_arch 3-isopropylmalate dehydratase, small subunit. This subfamily is most closely related to the 3-isopropylmalate dehydratase, small subunits which form TIGR00171. This subfamily includes the members of TIGR02084 which are gene clustered with other genes of leucine biosynthesis. The rest of the subfamily includes mainly archaeal species which exhibit two hits to this model. In these cases it is possible that one or the other of the hits does not have a 3-isopropylmalate dehydratase activity but rather one of the other related aconitase-like activities.
Probab=24.02 E-value=1.6e+02 Score=21.21 Aligned_cols=38 Identities=34% Similarity=0.549 Sum_probs=28.7
Q ss_pred CCCCCCCEEEEECCEEC-CCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 10 GRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l-~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
.+.++||.| |-|.++ .+-|+++|+..|+.. + +..+|++
T Consensus 43 ~~~~~g~ii--VaG~NFG~GSSRE~A~~al~~~---G--i~aVIA~ 81 (154)
T TIGR02087 43 KKVRPGDVI--VAGKNFGCGSSREQAALALKAA---G--IAAVIAE 81 (154)
T ss_pred hcCCCCcEE--EcCCcccCCccHHHHHHHHHHh---C--CCEEEee
Confidence 457778866 778888 788999999999986 3 3455554
No 115
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=23.72 E-value=71 Score=17.69 Aligned_cols=16 Identities=19% Similarity=0.254 Sum_probs=12.8
Q ss_pred ECCCCCHHHHHHHHHh
Q psy1030 25 NFENMSNDEAVRVLRE 40 (114)
Q Consensus 25 ~l~~~s~~eAv~~Lr~ 40 (114)
..-++|.++|++.|.+
T Consensus 19 e~l~LtpEDAvEaLi~ 34 (35)
T PF08383_consen 19 EALGLTPEDAVEALIG 34 (35)
T ss_pred hhcCCCHHHHHHHHhc
Confidence 3467899999999864
No 116
>PRK07631 amidophosphoribosyltransferase; Provisional
Probab=23.58 E-value=1.9e+02 Score=24.67 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=34.0
Q ss_pred CCCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 13 EPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 13 ~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
..|..|+-|+++-.++.|..+++++|+++ .-..|.+.+...
T Consensus 346 v~gk~VlLVDDsittGtTl~~~~~~L~~a--GA~eV~v~~~sP 386 (475)
T PRK07631 346 VEGKRVVMVDDSIVRGTTSRRIVTMLREA--GATEVHVRISSP 386 (475)
T ss_pred cCCceEEEEeeeeccHHHHHHHHHHHHHc--CCCEEEEEEeCC
Confidence 35888999999999999999999999988 234677777654
No 117
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=22.98 E-value=1.4e+02 Score=21.60 Aligned_cols=28 Identities=25% Similarity=0.178 Sum_probs=25.6
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.|-.++-|+++--++.|..++.+.|++.
T Consensus 96 ~gk~VLIVDDIidTG~Tl~~~~~~Lk~~ 123 (181)
T PRK09162 96 KGRTVLVVDDILDEGHTLAAIRDRCLEM 123 (181)
T ss_pred CCCEEEEEccccCcHHHHHHHHHHHHhC
Confidence 4677888999999999999999999986
No 118
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=22.34 E-value=2.1e+02 Score=20.85 Aligned_cols=32 Identities=34% Similarity=0.321 Sum_probs=28.7
Q ss_pred CCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 10 GRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
+....|+.++-|+++--++-|...++++|++.
T Consensus 108 ~~~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~ 139 (202)
T PRK00455 108 GRRLFGKRVLVVEDVITTGGSVLEAVEAIRAA 139 (202)
T ss_pred ccCCCCCEEEEEecccCCcHHHHHHHHHHHHc
Confidence 34456999999999999999999999999987
No 119
>cd01579 AcnA_Bact_Swivel Bacterial Aconitase-like swivel domain. Aconitase (aconitate hydratase or citrate hydrolyase) catalyzes the reversible isomerization of citrate and isocitrate as part of the TCA cycle. Cis-aconitate is formed as an intermediate product during the course of the reaction. This is the aconitase-like swivel domain, which is believed to undergo swivelling conformational change in the enzyme mechanism. This distinct subfamily is found only in bacteria and archea. Its exact characteristics are not known.
Probab=22.34 E-value=1.7e+02 Score=20.17 Aligned_cols=41 Identities=20% Similarity=0.199 Sum_probs=30.1
Q ss_pred CCCCCCCEEEEECCEEC-CCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 10 GRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~l-~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.+.+.||.-+-|-|.++ .+-|+++|+..|+.. + +.++|++.
T Consensus 42 ~~~~~~~~~iiVaG~nFG~GSSRE~A~~al~~~---G--i~aVIA~S 83 (121)
T cd01579 42 ERAKAAGPGFIVGGENYGQGSSREHAALAPMYL---G--VRAVLAKS 83 (121)
T ss_pred hhcccCCCeEEEcCCcCCCCccHHHHHHHHHHH---C--CCEEEEcc
Confidence 46788883334788888 688999999999986 2 35566543
No 120
>TIGR01134 purF amidophosphoribosyltransferase. Alternate name: glutamine phosphoribosylpyrophosphate (PRPP) amidotransferase.
Probab=22.27 E-value=1.8e+02 Score=24.22 Aligned_cols=39 Identities=18% Similarity=0.366 Sum_probs=31.8
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEe
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r 54 (114)
.|-.|+-|+++-.++.|..+++++|+++ ....|.+.++.
T Consensus 337 ~gk~v~lvDD~ittG~T~~~~~~~l~~~--ga~~v~~~~~s 375 (442)
T TIGR01134 337 RGKRVVLVDDSIVRGTTSRQIVKMLRDA--GAKEVHVRIAS 375 (442)
T ss_pred CCCEEEEEeccccccHHHHHHHHHHHHc--CCcEEEEEEcc
Confidence 4778999999999999999999999987 23456666654
No 121
>KOG0792|consensus
Probab=22.02 E-value=65 Score=30.40 Aligned_cols=33 Identities=21% Similarity=0.446 Sum_probs=30.0
Q ss_pred cCCCCCCCEEEEECCEECCCCCHHHHHHHHHhc
Q psy1030 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41 (114)
Q Consensus 9 ~GrL~~GD~Il~VNg~~l~~~s~~eAv~~Lr~~ 41 (114)
.-++..||+.+.+||.+.....|++.+.++++.
T Consensus 765 ~P~~~e~dq~~~ingr~~~~~~~~~~vs~irs~ 797 (1144)
T KOG0792|consen 765 TPRLNEGDQVTSINGRDVSESEHDQVVSLIRSP 797 (1144)
T ss_pred ccCCCcccceeeecccccccccccchHHHHhhh
Confidence 357888999999999999999999999999876
No 122
>PRK08341 amidophosphoribosyltransferase; Provisional
Probab=21.87 E-value=1.8e+02 Score=24.42 Aligned_cols=40 Identities=18% Similarity=0.302 Sum_probs=32.7
Q ss_pred CCCEEEEECCEECCCCCHHHHHHHHHhccCCCCcEEEEEEec
Q psy1030 14 PGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55 (114)
Q Consensus 14 ~GD~Il~VNg~~l~~~s~~eAv~~Lr~~~~~~~~V~L~V~r~ 55 (114)
.|-.++-|+++-.++.|..+++++|+++ .-..|.+.+...
T Consensus 333 ~gk~VlLVDD~IttGtTl~~~~~~L~~a--GAk~V~~~~~sp 372 (442)
T PRK08341 333 NGKRVVLVDDSIVRGTTMKRIVKMLRDA--GAREVHVRIASP 372 (442)
T ss_pred CCCEEEEEeeeeccHHHHHHHHHHHHhc--CCcEEEEEEcCC
Confidence 5778999999999999999999999987 233677777543
No 123
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=21.83 E-value=53 Score=22.69 Aligned_cols=16 Identities=19% Similarity=0.304 Sum_probs=10.5
Q ss_pred CCCCCCCEEEEECCEE
Q psy1030 10 GRIEPGDMILQVNDIN 25 (114)
Q Consensus 10 GrL~~GD~Il~VNg~~ 25 (114)
+.|++||+|+..+|..
T Consensus 75 ~~L~~GD~L~~~~G~~ 90 (130)
T PF07591_consen 75 EDLKVGDRLLTADGSW 90 (130)
T ss_dssp GG--TTSEEEEE-SSE
T ss_pred hhCCCCCEEEcCCCCE
Confidence 4699999999988853
No 124
>PF03793 PASTA: PASTA domain; InterPro: IPR005543 The PASTA domain is found at the C-termini of several Penicillin-binding proteins (PBP) and bacterial serine/threonine kinases. It binds the beta-lactam stem, which implicates it in sensing D-alanyl-D-alanine - the PBP transpeptidase substrate. In PknB of Mycobacterium tuberculosis (P71584 from SWISSPROT), all of the extracellular portion is predicted to be made up of four PASTA domains, which strongly suggests that it is a signal-binding sensor domain. The domain has also been found in proteins involved in cell wall biosynthesis, where it is implicated in localizing the biosynthesis complex to unlinked peptidoglycan. PASTA is a small globular fold consisting of 3 beta-sheets and an alpha-helix, with a loop region of variable length between the first and second beta-strands. The name PASTA is derived from PBP and Serine/Threonine kinase Associated domain [].; GO: 0008658 penicillin binding; PDB: 2ZC3_C 1QME_A 1RP5_B 2Z2M_C 2Z2L_F 2ZC4_C 1QMF_A 3M9G_A 3PY9_A 1K25_B ....
Probab=20.87 E-value=1.2e+02 Score=17.45 Aligned_cols=17 Identities=29% Similarity=0.462 Sum_probs=15.3
Q ss_pred ECCCCCHHHHHHHHHhc
Q psy1030 25 NFENMSNDEAVRVLREV 41 (114)
Q Consensus 25 ~l~~~s~~eAv~~Lr~~ 41 (114)
++.+++.++|.+.|++.
T Consensus 5 d~~g~~~~~a~~~l~~~ 21 (63)
T PF03793_consen 5 DLVGMTYDEAKSILEAA 21 (63)
T ss_dssp TTTTSBHHHHHHHHHHT
T ss_pred CcCCCcHHHHHHHHHHC
Confidence 57899999999999986
Done!