RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1030
(114 letters)
>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand,
cytoplasm, developmental protein, phosphoprotein, WNT
signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A
3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A*
1mc7_A
Length = 108
Score = 81.7 bits (202), Expect = 8e-22
Identities = 45/54 (83%), Positives = 50/54 (92%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
MKGGAVA DGRIEPGDM+LQVND+NFENMSND+AVRVLR++V KPGPI L VAK
Sbjct: 41 MKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHKPGPIVLTVAK 94
>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics,
PDZ domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB:
2koh_A 2k1z_A 2k20_A
Length = 127
Score = 78.7 bits (194), Expect = 2e-20
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK----PGPIKLVVAKCW 56
+ GGA DGR+ D ++ VN SN EA+ LR + G I+LV+ +
Sbjct: 63 IHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEGNIRGMIQLVILRRS 122
Query: 57 DPN 59
P+
Sbjct: 123 GPS 125
>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 71.2 bits (175), Expect = 1e-17
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+GGA DGRI+ D I++V+ I+ ++ + A VLR G ++ V+ + P
Sbjct: 48 TEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLR---NTKGNVRFVIGREKPSGP 104
>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural
proteomics in europe, spine, structural genomics,
hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 108
Score = 70.5 bits (173), Expect = 2e-17
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ GA DGRI GD +L VN ++ E ++ +AV LR + L++ K P
Sbjct: 50 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR---NTGQVVHLLLEKGQSPTS 106
Query: 61 K 61
K
Sbjct: 107 K 107
>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}
Length = 108
Score = 69.7 bits (171), Expect = 5e-17
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G A ALDGRIEP D IL+V+D+N + M+ + V VLR P++L++ +
Sbjct: 52 IPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR---NAGNPVRLLLIR 102
>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural
genomics, structural GEN consortium, SGC, structural
protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1
PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A
Length = 94
Score = 67.3 bits (165), Expect = 2e-16
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
++GGA DGR++ GD +L VN+ N +++ ++EAV L+ + L VAK
Sbjct: 41 IEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLK---NTSDMVYLKVAK 91
>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.40A {Homo sapiens}
Length = 92
Score = 67.3 bits (165), Expect = 3e-16
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+KGG DGR+ GD IL VN + N + + +L+ G + L V +
Sbjct: 37 VKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLK---CSLGTVTLEVGR 87
>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric
oxide synthase, oxidoreductase; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 127
Score = 67.6 bits (165), Expect = 4e-16
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 14/85 (16%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE--------VVQKPGP---IK 49
++GGA G I+ GD+IL VND ++S D A+ VLR ++ +
Sbjct: 41 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVLILRGPEGFTTH 100
Query: 50 LVVAKCWDPNPKGYFTIPRTEPVRP 74
L D PK TI T+P+ P
Sbjct: 101 LETTFTGDGTPK---TIRVTQPLGP 122
>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell
adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A*
1t2m_A 2ain_A
Length = 106
Score = 67.0 bits (164), Expect = 5e-16
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+KGGA +DGR+ GD +L V+ + +S + A ++ + + L VAK
Sbjct: 46 VKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMT---RTSSVVTLEVAK 96
>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti
density, glutametergic receptors, carbohydrate
metabolism, cycle, cell division; HET: MES; 1.85A
{Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A
Length = 170
Score = 67.7 bits (165), Expect = 1e-15
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GGA DGRI+ D++++V+ + ++ A VLR G ++ ++ +
Sbjct: 119 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR---NTKGRVRFMIGR 169
>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger,
oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1
PDB: 1qav_B
Length = 112
Score = 66.0 bits (161), Expect = 1e-15
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
++GGA G I+ GD+IL VND ++S D A+ VLR + + L++
Sbjct: 34 IRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIAS-ETHVVLILRGPEGFTT 92
Query: 61 KGYFTIPRTEPVRPI 75
T + I
Sbjct: 93 HLETTFTGDGTPKTI 107
>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 108
Score = 65.5 bits (160), Expect = 2e-15
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G G + PGD ++ VN+ +N S EAV +L+ V PG + L +
Sbjct: 52 VADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV--PPGLVHLGICS 103
>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain,
structural genomics, structural genom consortium, SGC,
phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 65.9 bits (161), Expect = 2e-15
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GGA DGR++ GD +L VN+ + E ++++EAV +L+ + L V K
Sbjct: 62 IDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILK---NTSEVVYLKVGK 112
>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 111
Score = 64.7 bits (158), Expect = 4e-15
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
GA DGR+ G +L+VN + +++ EAV++LR V + ++V ++ P
Sbjct: 52 SPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQLLRSV---GDTLTVLVCDGFESGP 108
>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 129
Score = 65.1 bits (159), Expect = 5e-15
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ G A +G I+ D I+ V+ +N + +N + V VLR + L + + +
Sbjct: 54 IPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRNA---GQVVHLTLVRRKTSSS 110
Query: 61 KGYFTIP 67
P
Sbjct: 111 TSPLEPP 117
>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission,
protein binding; NMR {Rattus norvegicus}
Length = 113
Score = 64.3 bits (157), Expect = 5e-15
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GGA DGRI+ D++++V+ + ++ A VLR G ++ ++ +
Sbjct: 43 TEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLR---NTKGRVRFMIGR 93
>2awx_A Synapse associated protein 97; membrane protein, synaptic
signaling, trafficking protein; HET: HIS; 1.80A {Rattus
norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A
Length = 105
Score = 63.5 bits (155), Expect = 1e-14
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
++GGA DG+++ GD +L VN ++ E ++++EAV L+ + L VAK
Sbjct: 41 IEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALK---NTSDFVYLKVAK 91
>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1,
HOST-virus interaction, structural genomics consortium,
synaptosome, tight junction; 1.35A {Homo sapiens}
Length = 97
Score = 62.7 bits (153), Expect = 2e-14
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
K AV DGRI+ GD I+ V+ N + +N +AV VLR + L + +
Sbjct: 41 TKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLR---HTGQTVLLTLMR 91
>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR
{Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A
1vj6_A 1gm1_A 1ozi_A
Length = 96
Score = 62.6 bits (153), Expect = 2e-14
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 58
+ GA DGRI GD +L VN ++ E ++ +AV LR + L++ K P
Sbjct: 41 IPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLR---NTGQVVHLLLEKGQSP 95
>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain,
RAB3-interacting molecule, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2css_A 1zub_A
Length = 131
Score = 63.3 bits (154), Expect = 3e-14
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
KG G + PGD +L+ N + + +E ++ E ++LVV++
Sbjct: 73 KKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKP-EPQVELVVSR 125
>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor,
PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2
Length = 130
Score = 62.9 bits (153), Expect = 3e-14
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
KG A ++PGD ILQ+ + ++ EA +++ + GP+ +V+ +
Sbjct: 65 FKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKAL--PDGPVTIVIRR 116
>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI,
structural genomics, alternative splicing, cell cycle,
cell division, cell junction; NMR {Homo sapiens}
Length = 121
Score = 62.4 bits (152), Expect = 4e-14
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GA DGR++ GD +++VN ++ S +E V +LR + G + L+V +
Sbjct: 66 LPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKME-GTVSLLVFR 118
>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Mus musculus} SCOP: b.36.1.1
Length = 118
Score = 62.5 bits (152), Expect = 4e-14
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGP-IKLVVAKC 55
+GGA G + GD I+ +N + + EA L++ + G I LVVA C
Sbjct: 51 YEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVC 106
>2opg_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 1.50A
{Homo sapiens}
Length = 98
Score = 61.5 bits (150), Expect = 5e-14
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 58
+ GA DGR+ GD IL+VN I+ ++DEA+ VLR Q P ++L + + P
Sbjct: 38 YEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLR---QTPQRVRLTLYRDEAP 92
>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 111
Score = 62.0 bits (151), Expect = 5e-14
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ GG DGR++ GD IL++ N + M++++ +VLR ++++VA+ +P
Sbjct: 46 VPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLR---NCGNSVRMLVAR----DP 98
Query: 61 KGYFTIPRT 69
G ++
Sbjct: 99 AGDISVTSG 107
>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural
genomics, structural genomics consortium, SGC,
metal-binding; 1.75A {Homo sapiens}
Length = 118
Score = 62.0 bits (151), Expect = 5e-14
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
GG ++ DGRI+ GD++L V+ + +S EAV +L+ I L +
Sbjct: 61 EPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRT---SSSIVLKALE 111
>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane,
mitochondria distribution, PDZ, membrane, scaffold,
mitochondrion, membrane protein; 1.35A {Homo sapiens}
PDB: 2jin_A
Length = 101
Score = 61.6 bits (150), Expect = 6e-14
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
+ GA ALDGR++ GD IL VN + +N+ + +AV + R + L V + +
Sbjct: 45 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR---NAGYAVSLRVQHRLESS 100
>2koj_A Partitioning defective 3 homolog; PDZ domain, structural
genomics, alternative splicing, cell cycle, cell
division, cell junction, coiled coil; NMR {Mus
musculus} PDB: 2ogp_A
Length = 111
Score = 61.6 bits (150), Expect = 6e-14
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
GA DGR++ GD +++VN ++ S +E V +LR + G + L+V +
Sbjct: 49 RGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKME-GTVSLLVFR 99
>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; Cys Ser mutant, S genomics consortium, SGC,
transferase; 2.00A {Homo sapiens}
Length = 90
Score = 61.1 bits (149), Expect = 6e-14
Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GA DGR+ GD ++ V+ S+ V+++++ ++ G + L V +
Sbjct: 35 VPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQ-GHVNLTVRQ 87
>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc,
LNX2_human, zinc-finger, polymorphism, ring finger
protein 1; 1.3A {Homo sapiens}
Length = 95
Score = 60.8 bits (148), Expect = 8e-14
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDP 58
++GG A DGR+ D +L +N + + + + A ++++ + L +A+ P
Sbjct: 37 LEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQ---ASGERVNLTIARPGKP 91
>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Homo sapiens} SCOP: b.36.1.1
Length = 124
Score = 61.4 bits (149), Expect = 1e-13
Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
A DGRI GD I+Q+N I +N EAV +L ++ L++A+
Sbjct: 56 DPNSIAAKDGRIREGDRIIQINGIEVQNRE--EAVALLTS--EENKNFSLLIARPELQLD 111
Query: 61 KGYFTIPRTEPVRP 74
+G + P
Sbjct: 112 EG----WMDDDSGP 121
>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 116
Score = 60.9 bits (148), Expect = 1e-13
Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GA A DGR+ GD IL+VN ++ N S++EA+ LR Q P ++LVV +
Sbjct: 52 EEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALR---QTPQKVRLVVYR 101
>2fne_A Multiple PDZ domain protein; structural protein, structural
genomics, SGC, structural genomics consortium, unknown
function; 1.83A {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 60.8 bits (148), Expect = 2e-13
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
GA + DGR++ GD I+ VN + E ++++EAV +L+ G + L+V
Sbjct: 61 FAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRT---KGTVTLMVLS 111
>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding;
1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A
Length = 97
Score = 60.0 bits (146), Expect = 2e-13
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
KGG G I GD IL +N + + EA+ +L+ + L + K D P
Sbjct: 38 TKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQ---MAGETVTLKIKKQTDAQP 94
>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 123
Score = 60.9 bits (148), Expect = 2e-13
Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G A DG++E GD+I+ +N++ ++ + V++ + V + LV+ +
Sbjct: 52 IPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQS-VPIGQSVNLVLCR 104
>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane
protein 25, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 120
Score = 60.5 bits (147), Expect = 2e-13
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GA ALDGR++ GD IL VN + +N+ + +AV + R + L V
Sbjct: 55 KENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFR---NAGYAVSLRVQH 105
>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 105
Score = 60.0 bits (146), Expect = 3e-13
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+GGA G ++ GD +L +N ++ +D AV +L I L++ + P
Sbjct: 46 AEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLT---AASPTIALLLEREAGSGP 102
>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 124
Score = 60.5 bits (147), Expect = 3e-13
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G A DGR+ GD +L++N+ S+ A +++ P +KLV +
Sbjct: 61 EGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIK---TAPSKVKLVFIR 109
>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight
junction protein, protein associated to tight junctions,
PATJ, structural genomics; NMR {Homo sapiens}
Length = 128
Score = 60.5 bits (147), Expect = 3e-13
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
G D R++ D IL +N +N+S+ +A+ +L+ Q G ++L+VA+ +
Sbjct: 62 QPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQ---QTTGSLRLIVAR-EPVH 117
Query: 60 PKGYFTIPRT 69
K + P +
Sbjct: 118 TKSSTSGPSS 127
>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1
interacting protein 1, activin receptor interacting
protein 1; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 59.6 bits (145), Expect = 3e-13
Identities = 10/54 (18%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G +GR+ GD I+++N + +M++ A+ +++ ++L++ +
Sbjct: 44 AEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIK---SGGRRVRLLLKR 94
>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 59.6 bits (145), Expect = 4e-13
Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G+ DGR+ PGD ++ V+ I ++ + ++ + G + L V +
Sbjct: 42 IAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAAR-NGQVNLTVRR 94
>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 93
Score = 59.2 bits (144), Expect = 4e-13
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ GG G ++ GD +L VN ++ E +++AV +L+ G +KLVV P+
Sbjct: 38 IPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLK---AAQGSVKLVVRS--GPSS 92
>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural
genomics, mouse cDNA, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 126
Score = 59.9 bits (145), Expect = 4e-13
Identities = 14/64 (21%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVVAKCWDPN 59
+ GA A DG ++PGD+++ V N + E +++L+ + G +++ + +
Sbjct: 57 INKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNI--TIGTVLQIKAYRGFLEI 114
Query: 60 PKGY 63
P+ +
Sbjct: 115 PQEW 118
>3e17_A Tight junction protein ZO-2; domain swapping, alternative
promoter usage, alternative splicing, cell junction,
cell membrane, disease mutation; 1.75A {Homo sapiens}
Length = 88
Score = 58.9 bits (143), Expect = 5e-13
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G DG + GD+IL++N ENMS +A +++ + G ++LVV +
Sbjct: 30 RTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIE---KSRGKLQLVVLR 79
>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, unknown function; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 59.3 bits (144), Expect = 5e-13
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ G A DGR+ GD IL+VN + + AV ++R ++ +VAK
Sbjct: 44 LPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIR---HGGKKMRFLVAKSDVETA 100
Query: 61 KGYFTIP 67
K + P
Sbjct: 101 KKIHSGP 107
>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction,
membrane, phosphorylati domain, protein binding; 1.70A
{Homo sapiens} PDB: 2jwe_A 2osg_A
Length = 81
Score = 58.4 bits (142), Expect = 5e-13
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 30 QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 79
>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide;
peptide binding protein; NMR {Drosophila melanogaster}
Length = 106
Score = 59.3 bits (144), Expect = 5e-13
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
++G +D +++ GD+I + N E + + + G + + V + +
Sbjct: 33 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA---NGKVSMEVTRPKPGSG 89
Query: 61 KGYFTIPRT 69
+PR
Sbjct: 90 GSGSLVPRL 98
>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal
transduction, structural genom structural genomics
consortium, SGC, signaling protein; 1.85A {Homo
sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A
1iu0_A 1iu2_A
Length = 102
Score = 58.9 bits (143), Expect = 6e-13
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ GGA A+DGR+ D +L+VN+++ + + AV L+ + ++LVV +
Sbjct: 42 IPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALK---EAGPVVRLVVRR 92
>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain,
scaffolding protein, membrane, sensory transduction,
vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A
2qku_A
Length = 96
Score = 58.5 bits (142), Expect = 7e-13
Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
++G +D +++ GD+I + N E + + + + G + + V +
Sbjct: 39 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGA---NGKVSMEVTR 89
>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 59.0 bits (143), Expect = 7e-13
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK--PGPIKLVVAK 54
+GG+ G+++ G +IL+VN + + EA R++ E + I +V +
Sbjct: 40 QRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDRDYIDFLVTE 95
>2i04_A Membrane-associated guanylate kinase, WW and PDZ
domain-containing protein 1; PDZ, E6 binding, tumor
suppressor, peptide binding protein; 2.15A {Mus
musculus}
Length = 85
Score = 58.4 bits (142), Expect = 7e-13
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G ALDG++E GD+I+ VND ++ + V++ + + + L + +
Sbjct: 33 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS-IPIGASVDLELCR 85
>2jil_A GRIP1 protein, glutamate receptor interacting protein-1;
endoplasmic reticulum, postsynaptic membrane, membrane,
MEMB protein; 1.5A {Homo sapiens}
Length = 97
Score = 58.0 bits (141), Expect = 1e-12
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
GG +G I+PGD +L V+ I ++ EA+ +L+ Q L++ D +
Sbjct: 41 PGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILK---QCGQEAALLIEY--DVSE 94
>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus
interaction, structural genomics consortium,
synaptosome, tight junction; 1.7A {Homo sapiens} PDB:
2iwp_A
Length = 120
Score = 58.5 bits (142), Expect = 1e-12
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G A ++ GD I+ + + E M++ +AV +L+ G I++ V
Sbjct: 61 HPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNA---SGSIEMQVVA 111
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90,
GLUR6, cell juncti membrane, lipoprotein, membrane,
palmitate, phosphoprotein; 2.05A {Rattus norvegicus}
PDB: 3zrt_A 2ka9_A
Length = 196
Score = 60.1 bits (146), Expect = 1e-12
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
++GGA DGR++ GD IL VN + E++ +++AV L+ + L VAK
Sbjct: 138 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNT---YDVVYLKVAK 188
Score = 57.8 bits (140), Expect = 9e-12
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ GGA A DGR+ D IL VN+++ +++ AV L+ + ++L V + P
Sbjct: 43 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK---EAGSIVRLYVMRRKPPAE 99
Query: 61 KGYFTIPRTEP 71
K P
Sbjct: 100 KVMEIKLIKGP 110
>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ
tandem, alternative splicing, cell junction, cytoplasm;
2.30A {Rattus norvegicus}
Length = 200
Score = 60.1 bits (146), Expect = 1e-12
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
GG +G I+PGD +L V+ I ++ EA+ +L++ L++
Sbjct: 143 RPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQC---GQEATLLIE 192
Score = 52.8 bits (127), Expect = 8e-10
Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GG A +++ GD I VN IN +DE + +L+ + L V
Sbjct: 41 RQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLK---NVGERVVLEVEY 91
>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 57.7 bits (140), Expect = 2e-12
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+K G GR+E GD++L +N + + +++ +AV +R + LV+ +
Sbjct: 46 LKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIR---AGGPQLHLVIRR 96
>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; transferase, STRU genomics, structural genomics
consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo
sapiens}
Length = 112
Score = 58.1 bits (141), Expect = 2e-12
Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G G++ GD IL++N +NM + A+ +++ ++L + +
Sbjct: 57 AEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIK---NGGRRVRLFLKR 107
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein
complex, PDZ domain, peptide binding protein; 2.60A
{Drosophila melanogaster}
Length = 206
Score = 59.5 bits (144), Expect = 2e-12
Identities = 12/68 (17%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
++G +D +++ GD+I + N E + + + G + + V + P P
Sbjct: 144 IQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGA---NGKVSMEVTR---PKP 197
Query: 61 KGYFTIPR 68
P+
Sbjct: 198 TLRTEAPK 205
Score = 42.6 bits (100), Expect = 4e-06
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVN--DINFENMSNDEAVRVLREVVQKP 45
G VA D R++ D I +N I+ +M+ + ++ +K
Sbjct: 53 YPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTTYEKA 99
>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural
genomics, structura genomics consortium, SGC, signaling
protein; 1.12A {Homo sapiens} PDB: 2pku_A
Length = 114
Score = 57.5 bits (139), Expect = 3e-12
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
ALDG + GD I VN + + + E ++++EV G + + K
Sbjct: 58 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV---KGEVTIHYNK 108
>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling
protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1
Length = 98
Score = 57.3 bits (139), Expect = 3e-12
Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ L GR++ GD IL +N + N + + +++E I+L +
Sbjct: 45 VPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA---DFKIELEIQT 95
>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell
junction, membrane, phosphoprot domain, tight junction,
transmembrane; 2.40A {Homo sapiens}
Length = 92
Score = 57.0 bits (138), Expect = 3e-12
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ A DG I+ GD++L++N ENMS +A ++ + G +K+VV +
Sbjct: 32 QDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIE---RSKGKLKMVVQR 81
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem
repeats, scaffold protein, protein binding; NMR {Rattus
norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Length = 196
Score = 59.0 bits (143), Expect = 3e-12
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
KG G +E GD +L +++I ++ S ++AV++L++ +KL + K
Sbjct: 143 KKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQC---EDLVKLKIRK 193
Score = 55.9 bits (135), Expect = 5e-11
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 3/78 (3%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G ++ GD ++ +N I E+ + +EA ++LR K+ + +D
Sbjct: 45 ADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLR---DSSITSKVTLEIEFDVAES 101
Query: 62 GYFTIPRTEPVRPIDPGA 79
+ P
Sbjct: 102 VIPSSGTFHVKLPKKHSV 119
>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic
domain associated protein, structural genomics; NMR
{Homo sapiens} SCOP: b.36.1.1
Length = 107
Score = 56.6 bits (137), Expect = 4e-12
Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G A +G ++ D I++VN + ++D+AV + PI + V +
Sbjct: 49 VDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEAFK---TAKEPIVVQVLR 99
>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker,
structural genomics, struc genomics consortium, SGC,
structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1
Length = 103
Score = 56.6 bits (137), Expect = 5e-12
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
++ +G ++PGD I++V+ ++ + S+++AV +R+ P+ +V
Sbjct: 47 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA---GNPVVFMV 95
>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein
1; PDZ domain, ATP-binding, cell junction, cell
membrane; NMR {Homo sapiens} PDB: 2kpl_A
Length = 129
Score = 57.1 bits (138), Expect = 5e-12
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G ALDG++E GD+I+ VND ++ + V++ + + + L + +
Sbjct: 51 VLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQS-IPIGASVDLELCR 103
>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3,
DLG3-human presynaptic protein, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 113
Score = 57.0 bits (138), Expect = 5e-12
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ GG L G + GD IL VN +N N ++++A L+ + + +V
Sbjct: 47 LAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALK---RAGQSVTIVA 95
>2o2t_A Multiple PDZ domain protein; structural protein, structural
genomics, structural genomics consortium, SGC; 2.70A
{Homo sapiens}
Length = 117
Score = 57.0 bits (138), Expect = 5e-12
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINF-ENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPN 59
+G DGR++ D IL +N + +++ +A+ +L+ + ++LV+A+
Sbjct: 57 QEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQ---KAKDTVQLVIAR--GSL 111
Query: 60 PKGY 63
P+ Y
Sbjct: 112 PQYY 115
>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide
binding protein; 1.54A {Rattus norvegicus} SCOP:
b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A
Length = 119
Score = 57.1 bits (138), Expect = 5e-12
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
GG L G + GD IL VN ++ N S+++A L+ + ++ P+
Sbjct: 47 AGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK---NAGQTVTIIAQY----KPE 99
Query: 62 GYFTIPRTEPVRPIDP 77
Y R E +D
Sbjct: 100 EY---SRFEANSRVDS 112
>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane,
HOST- interaction, structural genomics consortium,
synaptosome, T junction; 1.80A {Homo sapiens}
Length = 123
Score = 57.1 bits (138), Expect = 5e-12
Identities = 12/52 (23%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
++ +G ++PGD I++V+ ++ + S+++AV +R+ P+ +V
Sbjct: 67 LEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKA---GNPVVFMV 115
>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing
isoform B; GOPC PDZ domain, structural protein; NMR
{Homo sapiens}
Length = 103
Score = 56.2 bits (136), Expect = 6e-12
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 43 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 91
>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein,
STXBP4 protein, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: b.36.1.1
Length = 109
Score = 56.3 bits (136), Expect = 7e-12
Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAK 54
+ GG DGR++PGD ++ +N + +S +EA ++ + P ++ +
Sbjct: 49 IPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLRSESPWEIAFIR 103
>3i4w_A Disks large homolog 4; alpha and beta protein, alternative
splicing, cell junction, cell membrane, lipoprotein,
membrane, palmitate, phosphoprotein; 1.35A {Homo
sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A
Length = 104
Score = 56.2 bits (136), Expect = 8e-12
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
+ GG L G + GD IL VN ++ N S+++A L+ + ++
Sbjct: 43 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALK---NAGQTVTIIAQ 92
>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 56.3 bits (136), Expect = 1e-11
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ GG+ G++ G +L+ N I + + +E ++ Q+ G ++ V
Sbjct: 57 LPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIIS---QQSGEAEICV 105
>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor
(LCF), structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.2
Length = 119
Score = 56.3 bits (136), Expect = 1e-11
Identities = 12/51 (23%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G + +G I+ G+ +L +N + + ++ +A+ +LR Q P + V+
Sbjct: 51 PNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILR---QAREPRQAVI 98
>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1-
associated tight junction protein, protein associated to
tight junctions, PATJ; NMR {Homo sapiens}
Length = 117
Score = 55.5 bits (134), Expect = 2e-11
Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
++ ++ GD IL+V+ ++ +N S+ EAV ++ P+ +V
Sbjct: 58 LEDSPAGKTNALKTGDKILEVSGVDLQNASHSEAVEAIKNA---GNPVVFIV 106
>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase,
protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A
Length = 125
Score = 55.5 bits (134), Expect = 2e-11
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
ALDG + GD I VN + + + E ++++EV G + + K
Sbjct: 53 FDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEV---KGEVTIHYNK 103
>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein;
structural protein-hydrolase complex, peptide binding
protei; NMR {Homo sapiens}
Length = 112
Score = 55.1 bits (133), Expect = 2e-11
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G G + GD IL VN +N + + EAV +L Q+ G I+ V
Sbjct: 61 HPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILS---QQRGEIEFEV 109
>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer,
membrane protein-oxidoreductase CO; 1.90A {Mus
musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A
Length = 90
Score = 54.6 bits (132), Expect = 3e-11
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
KG A + GD IL VN + + ++DEAV+ L+ + + L V
Sbjct: 38 FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALK---KTGKEVVLEV 86
>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken
structural genomics/proteomics initiative, RSGI, protein
binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 117
Score = 53.6 bits (129), Expect = 9e-11
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
V G + PGD IL ++ + E+ S EA ++L + ++L + P P
Sbjct: 50 KPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASI---SEKVRLEIL----PVP 102
Query: 61 KGYFTIPRTEP 71
+ + +
Sbjct: 103 QSQRPLRPSSG 113
>3gge_A PDZ domain-containing protein GIPC2; structural genomics,
structural genomics consort protein binding; 2.60A
{Homo sapiens}
Length = 95
Score = 52.8 bits (127), Expect = 1e-10
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREV 41
GG + I GD I +N N + + + L+E+
Sbjct: 36 KDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKEL 76
>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain, structural
genomics; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 114
Score = 52.4 bits (126), Expect = 2e-10
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G +++ GD IL VN + NM + + V+++++ + L +
Sbjct: 52 DGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIKDA---GLSVTLRIIP 101
>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3;
neuron-specific X11L2 protein, neuronal
MUNC18-1-interacting protein 3, MINT-3; NMR {Homo
sapiens}
Length = 101
Score = 52.1 bits (125), Expect = 2e-10
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
+ GG G + GD + +N + + +RE + + L + C
Sbjct: 45 LHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRE-TKSQTSVTLSIVHC 98
>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 110
Score = 52.3 bits (126), Expect = 3e-10
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ G A G + GD +L+VN + + + EAV LR +++ V +
Sbjct: 54 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR---GAGTAVQMRVWR 103
>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated
protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 96
Score = 52.0 bits (125), Expect = 3e-10
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G++ PGD ILQ+N+ E++S + AV +LRE + + V +C P
Sbjct: 45 HGKLFPGDQILQMNNEPAEDLSWERAVDILREA---EDSLSITVVRCTSSGPS 94
>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex,
erbin., signaling protein; 1.25A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1mfl_A
Length = 95
Score = 51.2 bits (123), Expect = 4e-10
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G ++PGD I+Q N +F N+ + +AV +L+ ++L++ +
Sbjct: 43 QPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK---TFQNTVELIIVR 91
>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 117
Score = 51.7 bits (124), Expect = 4e-10
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G G +E GD +L+ N IN + + +A ++ Q+ I ++
Sbjct: 50 TVGSIAHQAG-LEYGDQLLEFNGINLRSATEQQARLIIG---QQCDTITILA 97
>2xkx_A Disks large homolog 4; structural protein, scaffold protein,
membrane associated GU kinase; 22.9A {Rattus norvegicus}
Length = 721
Score = 54.5 bits (130), Expect = 5e-10
Identities = 21/111 (18%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA-KCWDPN 59
+ GGA A DGR+ D IL VN+++ +++ AV L+ + ++L V +
Sbjct: 97 IPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALK---EAGSIVRLYVMRRKPPAE 153
Query: 60 PKGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGFPFLRVNPTLNRHKKGTVH 110
+ + V + + ++ HK G +
Sbjct: 154 KVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQ 204
Score = 50.3 bits (119), Expect = 1e-08
Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ GG L G + GD IL VN ++ N S+++A L+ + ++ +
Sbjct: 339 LAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNA---GQTVTIIAQYKPEEYS 395
Query: 61 KGYFTIPRTEP 71
+ I
Sbjct: 396 RFEAKIHDLRE 406
Score = 40.3 bits (93), Expect = 4e-05
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
++GGA DGR++ GD IL VN + E++ +++AV L+
Sbjct: 192 IEGGAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKN 231
>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL
conjugation, leucine-rich repeat, alternative splicing,
cytoplasm, circletail, coiled coil; 1.30A {Homo
sapiens}
Length = 97
Score = 50.7 bits (122), Expect = 8e-10
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ G A G + GD +L+VN + + + EAV LR +++ V
Sbjct: 42 SEEGPAARAG-VRVGDKLLEVNGVALQGAEHHEAVEALR---GAGTAVQMRV 89
>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal
peptide complex, high affnity ligand, signaling
protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A
Length = 103
Score = 50.9 bits (122), Expect = 8e-10
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G ++PGD I+Q N +F N+ + +AV +L+ ++L++ +
Sbjct: 51 QPEGPA--SKLLQPGDKIIQANGYSFINIEHGQAVSLLK---TFQNTVELIIVR 99
>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1
protein, structural genomics, riken structural
genomics/proteomics initiative; NMR {Mus musculus} SCOP:
b.36.1.1
Length = 113
Score = 50.9 bits (122), Expect = 9e-10
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+KGGA G + GD +L++N I +E +L ++ G + V+ P+
Sbjct: 56 VKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDM---HGTLTFVLIPSSGPSS 112
>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high
affinity ligand, cell adhesio; 1.60A {Homo sapiens}
PDB: 2h2c_A 2h3m_A 2rrm_A
Length = 107
Score = 50.8 bits (122), Expect = 9e-10
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+KGG +G+++ D + VN ++ +N+ + AV+ LR + K+ +
Sbjct: 47 LKGGPA--EGQLQENDRVAMVNGVSMDNVEHAFAVQQLR---KSGKNAKITI 93
>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase
binding domain, signaling protein; HET: GNP; 2.10A {Mus
musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A
2lc7_A 1rzx_A
Length = 128
Score = 51.0 bits (122), Expect = 1e-09
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ GG G + D +L+VN I S D+ ++ + + V
Sbjct: 73 VPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQVTDMMI---ANSRNLIITV 121
>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog;
PDZ domain, cellular signaling, structural genomics; NMR
{Mus musculus} SCOP: b.36.1.1
Length = 122
Score = 50.6 bits (121), Expect = 2e-09
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G ++ GD ++ +N I E+ + +EA ++LR+ K+ +
Sbjct: 54 ADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS---SITSKVTL 101
>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 117
Score = 50.1 bits (120), Expect = 2e-09
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ GG DG ++ D ++ VN E++ + AV+ LR + +VV
Sbjct: 54 LPGGPA--DGLLQENDRVVMVNGTPMEDVLHSFAVQQLR---KSGKIAAIVV 100
>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion;
1.99A {Homo sapiens} PDB: 3shu_A
Length = 124
Score = 50.2 bits (120), Expect = 2e-09
Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+ A +G +E GD IL+VN+++F N+ +EAV L + + K + ++ K
Sbjct: 60 EDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD-LPKGEEVTILAQK 110
>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein
3; structural genomics consortium, SGC, PDZ domain,
signaling P; 1.60A {Homo sapiens}
Length = 113
Score = 49.5 bits (118), Expect = 4e-09
Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTI 66
++ GD+I ++ N +N+++ + V VL++ + L++ + P+P +
Sbjct: 45 QWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVG-ADVPLLILRGGPPSPTKTAKM 103
Query: 67 PRTEP 71
Sbjct: 104 GSGSG 108
>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics
consortium, SGC, protein BIN; 1.30A {Homo sapiens}
Length = 93
Score = 48.5 bits (116), Expect = 5e-09
Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
M+GGA G I GD + +VN I E+ +E +++L + G I +
Sbjct: 36 MRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQS---QGAITFKIIPGSKEET 92
>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding;
2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A
1u37_A 1u38_A 2yt8_A
Length = 388
Score = 51.5 bits (122), Expect = 5e-09
Identities = 10/56 (17%), Positives = 23/56 (41%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCW 56
M GG A G++ GD I+ +N + + +++ + + +V+
Sbjct: 240 MNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQVKLNIVSCPP 295
Score = 45.3 bits (106), Expect = 5e-07
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
G +A G + G I+++N + ++++ V+ L G I +
Sbjct: 325 GGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNS---VGEIHMKTM 371
>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding
site complex, protein binding; 1.43A {Homo sapiens} PDB:
3nfl_A 2vph_A
Length = 107
Score = 48.7 bits (116), Expect = 7e-09
Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVV 52
A R+ GD ++ +N + ++D+ V ++ ++ G + L+V
Sbjct: 54 TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLV 104
>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane
protein; NMR {Homo sapiens} PDB: 2ev8_A
Length = 97
Score = 47.4 bits (113), Expect = 1e-08
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
+ GG + G + GD IL++N N N S D+ + ++E G I L V
Sbjct: 44 LHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKET---KGMISLKVI 93
>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain,
ptpase, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: b.36.1.1
Length = 119
Score = 47.9 bits (114), Expect = 1e-08
Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKP-GPIKLVVA 53
A R+ GD ++ +N + ++D+ V ++ ++ G + L+V
Sbjct: 52 TPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERHSGELMLLVR 103
>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune
enteropathy-related antigen AIE-75 ,antigen
NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens}
SCOP: b.36.1.1 PDB: 2kbs_A
Length = 114
Score = 47.9 bits (114), Expect = 2e-08
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
G A G +E GD I++VN ++F N+ + EAV VL+
Sbjct: 50 PGSLSAEVG-LEIGDQIVEVNGVDFSNLDHKEAVNVLK 86
>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 101
Score = 47.3 bits (113), Expect = 2e-08
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
G +G + GD IL+VND + +++ EAV+ L+ + V + P
Sbjct: 43 EPGSLAEKEG-LRVGDQILRVNDKSLARVTHAEAVKALK---GSKKLVLSVYSAGRISGP 98
Query: 61 K 61
Sbjct: 99 S 99
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Length = 263
Score = 49.4 bits (117), Expect = 2e-08
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
KG A + GD IL VN + + ++DEAV+ L++
Sbjct: 111 FKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKK 150
>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor
clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1
Length = 88
Score = 46.6 bits (111), Expect = 2e-08
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
M GG + G + GD I ++N I+ N + ++ ++LRE+ G I +
Sbjct: 33 MHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREM---RGSITFKIV 82
>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 100
Score = 46.6 bits (111), Expect = 4e-08
Identities = 13/51 (25%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+G + G + GD I +VN ++ E+ + AV+VL + ++V
Sbjct: 45 EGSSAERAG-LCVGDKITEVNGLSLESTTMGSAVKVLT----SSSRLHMMV 90
>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 104
Score = 46.2 bits (110), Expect = 5e-08
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G ++ GD +L VND++F+++ + +AV +L+ I + V
Sbjct: 50 PDSDAHRAG-LQEGDQVLAVNDVDFQDIEHSKAVEILK----TAREISMRV 95
>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing
protein 1; structural genomi consortium, SGC,
ATP-binding, cell junction; 1.60A {Homo sapiens}
Length = 88
Score = 45.7 bits (109), Expect = 6e-08
Identities = 11/46 (23%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 7 ALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
++ GD+I++VN N + +++++ V +L E + + L+V
Sbjct: 38 PRSRGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKG-SEVTLLV 82
>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two
alpha-helices, protein binding; NMR {Rattus norvegicus}
SCOP: b.36.1.1
Length = 91
Score = 45.8 bits (109), Expect = 6e-08
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G L G ++P D +LQVN + + V ++ + + LV+++
Sbjct: 41 PAGPGDLGG-LKPYDRLLQVNHVRTRDFDCCLVVPLIA---ESGNKLDLVISR 89
>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding,
nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens}
PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A
Length = 139
Score = 46.6 bits (110), Expect = 8e-08
Identities = 14/54 (25%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
+GG + G ++ GD I+QVN + +++D+A + L + + ++L+V +
Sbjct: 72 SEGGPAEIAG-LQIGDKIMQVNGWDMTMVTHDQARKRLTK--RSEEVVRLLVTR 122
>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2);
atrophin-1 interacting protein 1, PDZ domain,
structural genomics, KIAA0705 protein; NMR {Homo
sapiens} SCOP: b.36.1.1
Length = 96
Score = 45.5 bits (108), Expect = 9e-08
Identities = 11/44 (25%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ GD+I+++N N +N+S+ E V +L++ L++
Sbjct: 45 CPGLCEGDLIVEINQQNVQNLSHTEVVDILKD-CPIGSETSLII 87
>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled
coil, deafness, hearing, non-syndromic deafness,
polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A
Length = 192
Score = 46.9 bits (111), Expect = 1e-07
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
KGG G ++ GD I+++N + + +++E + ++R
Sbjct: 119 KGGQADSVG-LQVGDEIVRINGYSISSCTHEEVINLIR 155
>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.36.1.1
Length = 128
Score = 45.6 bits (108), Expect = 1e-07
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
G G ++ GD IL+VN +F N+ +DEAVR+L+
Sbjct: 55 PGSEAEGSG-LKVGDQILEVNGRSFLNILHDEAVRLLK 91
>2eaq_A LIM domain only protein 7; conserved hypothetical protein,
structural genomics, NPPSFA; 1.46A {Homo sapiens}
Length = 90
Score = 44.7 bits (106), Expect = 2e-07
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G+ A +++ D I+ +N+ F + E + + Q+ G + + V
Sbjct: 38 GSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAK-AQETGHLVMDV 85
>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma
homolog, phosphorylation, signaling PR LIM domain, PDZ
domain; 1.5A {Homo sapiens}
Length = 88
Score = 44.6 bits (106), Expect = 2e-07
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G A + GD++L ++ IN + M++ EA ++ G + + +
Sbjct: 37 GGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIK---GCTGSLNMTL 82
>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics,
structural genomics consort unknown function; HET: PG4;
1.50A {Homo sapiens} PDB: 2v1w_A*
Length = 91
Score = 44.3 bits (105), Expect = 2e-07
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G+ A + GD+I ++ N NM++ EA ++ + L VA+
Sbjct: 37 GSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIK---GCTDNLTLTVAR 84
>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 94
Score = 44.2 bits (105), Expect = 3e-07
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ G + PGD+I+ +N + ENM + EA +R Q P++L + + P+
Sbjct: 39 ERGKAEAAD-LRPGDIIVAINGQSAENMLHAEAQSKIR---QSASPLRLQLDRSSGPSS 93
>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics,
structural genomics consort metal binding protein;
1.70A {Homo sapiens} PDB: 3pdv_A
Length = 87
Score = 43.4 bits (103), Expect = 4e-07
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
A D + PGD+I+ +N + E M + EA +R Q P P++L + +
Sbjct: 36 RGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIR---QSPSPLRLQLDR 83
>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.9 bits (104), Expect = 4e-07
Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G A + GD++L ++ I+ + M++ EA ++ G + + + +
Sbjct: 39 GGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIK---ACTGSLNMTLQRASAAAKS 93
>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 94
Score = 43.8 bits (104), Expect = 4e-07
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G AL + PGD+I +N + E M++ EA ++ + L V
Sbjct: 41 AGSKAALAA-LCPGDLIQAINGESTELMTHLEAQNRIK---GCHDHLTLSV 87
>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ
domain, cytoskeleton, actin binding, structural
genomics; NMR {Mus musculus} SCOP: b.36.1.1
Length = 103
Score = 43.5 bits (103), Expect = 6e-07
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G+ A + PGD+IL ++ E+M++ +A ++ + L +
Sbjct: 39 GSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIK---AASYQLCLKI 84
>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere,
structural protein; NMR {Homo sapiens} SCOP: b.36.1.1
PDB: 1wjl_A
Length = 85
Score = 43.0 bits (102), Expect = 6e-07
Identities = 9/49 (18%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
G+ A ++ GD+++ ++ +N + M++ EA ++ + L +
Sbjct: 35 GSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK---SASYNLSLTL 80
>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural
genomics consortium, SGC; 1.11A {Homo sapiens}
Length = 89
Score = 43.1 bits (102), Expect = 6e-07
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
GG A G + GD +L ++ N ++++ EA +R + L +++
Sbjct: 36 PGGKAAQAG-VAVGDWVLSIDGENAGSLTHIEAQNKIR---ACGERLSLGLSRA 85
>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain,
scaffolding protein signaling protein; 1.56A {Homo
sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A
1obz_A 1w9o_A 1w9q_A 1ybo_A
Length = 166
Score = 44.4 bits (105), Expect = 7e-07
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+L G + GD +LQ+N N S+D+A +VL++ I + +
Sbjct: 35 QANSPASLVG-LRFGDQVLQINGENCAGWSSDKAHKVLKQ--AFGEKITMTI 83
Score = 34.8 bits (80), Expect = 0.002
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+K + A +G + I ++N N + + + +L + + +
Sbjct: 115 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS---TSGTVVTITI 162
>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo
sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A
2ocs_A
Length = 91
Score = 42.7 bits (101), Expect = 9e-07
Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G+ A + GD +++VN N E ++ + V +R ++L+V
Sbjct: 37 GSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIR---AALNAVRLLVVD 84
>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding,
RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A
{Homo sapiens}
Length = 109
Score = 42.1 bits (99), Expect = 2e-06
Identities = 9/56 (16%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWD 57
+ ++ G GD I+ + ++ + ++ E +++L+ I++ V D
Sbjct: 53 PYCSASVAG-AREGDYIVSIQLVDCKWLTLSEVMKLLKSF--GEDEIEMKVVSLLD 105
>2eei_A PDZ domain-containing protein 1; regulatory factor, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 106
Score = 42.0 bits (99), Expect = 2e-06
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 7/70 (10%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G G + D +++VN N E+ S++E V ++ + + ++ D
Sbjct: 41 PQGVAMRAG-VLADDHLIEVNGENVEDASHEEVVEKVK---KSGSRVMFLLV---DKETD 93
Query: 62 GYFTIPRTEP 71
++ P
Sbjct: 94 KRHVEQKSGP 103
>2edp_A Fragment, shroom family member 4; APX/shroom family member,
KIAA1202 protein, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 100
Score = 41.6 bits (98), Expect = 3e-06
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GG AL ++ GD ++ +N EA+ +++ +KL+V
Sbjct: 44 DGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIK---GSFRILKLIV 90
>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: b.36.1.1
Length = 100
Score = 40.1 bits (94), Expect = 1e-05
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR--------EVVQKPGP 47
GG G ++ D +LQ+N+ E+ E +R V + GP
Sbjct: 45 SGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRVSGP 97
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3,
microtubule associated serine/threonine kinase 3, PDZ
domain, structural genomics; 1.20A {Homo sapiens} PDB:
2w7r_A 2kqf_A 2kyl_A 3ps4_A
Length = 99
Score = 39.7 bits (93), Expect = 1e-05
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G+ A + + GD+I +N + + + + V +L +
Sbjct: 44 GSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLK 80
>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP:
b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A
Length = 82
Score = 39.2 bits (92), Expect = 1e-05
Identities = 7/52 (13%), Positives = 20/52 (38%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+K + A +G + I ++N N + + + +L + + +
Sbjct: 31 VKDSSAARNG-LLTEHNICEINGQNVIGLKDSQIADILS---TSGTVVTITI 78
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 40.9 bits (95), Expect = 2e-05
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G + D I++VN + E + + V +R KL+V D
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR---AGGDETKLLV---VDRETD 94
Query: 62 GYFTIPRTEPVRP 74
+F R P +
Sbjct: 95 EFFKKCRVIPSQE 107
>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation,
structural genomics, structural genomics consortium,
SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A
Length = 90
Score = 39.2 bits (92), Expect = 2e-05
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAK 54
G A G + D +++VN N E + + E V ++ + +L+V
Sbjct: 37 PGSPAARSG-LRAQDRLIEVNGQNVEGLRHAEVVASIK---AREDEARLLVVG 85
>3qe1_A Sorting nexin-27, G protein-activated inward RECT potassium
channel 3 chimera; PDZ domain, PDZ binding, GIRK3
regulation, early endosomes; 1.68A {Rattus norvegicus}
PDB: 3qdo_A 3qgl_A
Length = 107
Score = 39.3 bits (92), Expect = 3e-05
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
GGA G + GD IL+VN +N E ++ + V ++R + L V
Sbjct: 52 PGGAADRAG-VRKGDRILEVNGVNVEGATHKQVVDLIR---AGEKELILTV 98
>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs
large homolog 2, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 91
Score = 39.0 bits (91), Expect = 3e-05
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
+ GG VA G + GD+I +VN + +LR G + L +
Sbjct: 37 LHGGMVAQQGLLHVGDIIKEVNGQPVGS-DPRALQELLR---NASGSVILKILSG 87
>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling
protein; NMR {Homo sapiens}
Length = 83
Score = 38.7 bits (91), Expect = 3e-05
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
+G G + GD IL VN+IN + S+++ V+++ + G + +V+A
Sbjct: 32 RGSPADFVG-LRAGDQILAVNEINVKKASHEDVVKLIG---KCSGVLHMVIA 79
>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1;
copper chaperone for superoxide dismutase, neuronal
adaptor, protein transport; NMR {Homo sapiens} SCOP:
b.36.1.1
Length = 90
Score = 38.2 bits (89), Expect = 4e-05
Identities = 11/52 (21%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
M+GG G + G I+++N + +++ V +L G I +
Sbjct: 39 MRGGIAERGG-VRVGHRIIEINGQSVVATPHEKIVHILS---NAVGEIHMKT 86
>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm,
phosphoprotein, transport protein, CAsp; 2.60A {Homo
sapiens} PDB: 2eej_A
Length = 91
Score = 38.0 bits (89), Expect = 5e-05
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
KGG L G +E D+I++VN +N + ++ V ++ + L+V
Sbjct: 35 QKGGPADLAG-LEDEDVIIEVNGVNVLDEPYEKVVDRIQ---SSGKNVTLLVC 83
>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3,
human, structural genomics, structural GE consortium,
SGC, signaling protein; 2.39A {Homo sapiens} SCOP:
b.36.1.1
Length = 91
Score = 38.1 bits (89), Expect = 6e-05
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
GG G ++ D +LQ+N+ E+ E +R P I L+V
Sbjct: 33 SGGPAERAG-LQQLDTVLQLNERPVEHWKCVELAHEIR---SCPSEIILLVW 80
>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain,
intracellular signaling cascade, signal transduction;
NMR {Mus musculus} SCOP: b.36.1.1
Length = 111
Score = 37.9 bits (88), Expect = 8e-05
Identities = 9/50 (18%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLV 51
+ +L G + GD I+ + ++ + ++ E +++L+ + +K+V
Sbjct: 45 PHCSASLAG-AKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVEMKVV 93
>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A
{Homo sapiens}
Length = 96
Score = 37.3 bits (87), Expect = 1e-04
Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
G A ++ GD ++ V + E + ++E V ++ + + L V
Sbjct: 40 GLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQ---GQGSCVSLTVV 86
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell
adhesion; 2.90A {Homo sapiens}
Length = 468
Score = 38.7 bits (89), Expect = 1e-04
Identities = 21/96 (21%), Positives = 37/96 (38%), Gaps = 7/96 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
++ A +G +E GD IL+VN+++F N+ +EAV L ++ P V
Sbjct: 31 LEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLDL-----PKGEEVTILAQKKK 84
Query: 61 KGYFTIPRTEPVRPIDPGAWVAHTAAIRGDGFPFLR 96
Y I ++ + G F +
Sbjct: 85 DVYRRIVESDVGDSFYIRTHFEYEKE-SPYGLSFNK 119
>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus}
Length = 102
Score = 37.0 bits (86), Expect = 2e-04
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
G+ A ++ D+++ VN + E + +D V ++R + L+V
Sbjct: 40 GSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIR---KGGDQTTLLVL 86
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM,
tight junction, cell adhesio; 2.50A {Homo sapiens} PDB:
3tsw_A 3lh5_A
Length = 391
Score = 38.3 bits (88), Expect = 2e-04
Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
++ A +G +E GD IL+VN+++F N+ +EAV L +
Sbjct: 39 LEDSPAAKEG-LEEGDQILRVNNVDFTNIIREEAVLFLLD 77
>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ
domain, PDZ2, acetylation, cell projection, membrane,
polymorphism; NMR {Homo sapiens}
Length = 98
Score = 36.6 bits (85), Expect = 2e-04
Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G + D I++VN + E + + V +R KL+V D
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR---AGGDETKLLVV---DRETD 94
Query: 62 GYF 64
+F
Sbjct: 95 EFF 97
>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain,
protein, acetylation, cell projection, disease mutation,
membrane; NMR {Homo sapiens}
Length = 128
Score = 37.2 bits (86), Expect = 2e-04
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPK 61
G + D I++VN + E + + V +R KL+V D
Sbjct: 42 PDSPAEASG-LRAQDRIVEVNGVCMEGKQHGDVVSAIR---AGGDETKLLV---VDRETD 94
Query: 62 GYFTIPRTEPVRP 74
+F R P +
Sbjct: 95 EFFKKCRVIPSQE 107
>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding
protein; PDZ domain, cytoplasm, membrane, polymorphism,
protein binding; 2.70A {Homo sapiens}
Length = 104
Score = 36.7 bits (85), Expect = 2e-04
Identities = 7/37 (18%), Positives = 19/37 (51%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ A ++ GD++ +N ++ E + + V ++R
Sbjct: 58 DSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIRS 94
>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ
domain, arhgef11, KIAA0380, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A
Length = 93
Score = 36.5 bits (85), Expect = 2e-04
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLR 39
GGA G ++ GD I++VN N S+ E V++++
Sbjct: 38 PGGAAMKAG-VKEGDRIIKVNGTMVTNSSHLEVVKLIK 74
>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease,
serine protease, serine- lysine catalytic DYAD, PDZ
domain, photosynthesis; 1.80A {Scenedesmus obliquus}
SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A
Length = 388
Score = 38.0 bits (89), Expect = 2e-04
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 10/94 (10%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVVAKCWDPNPKGYFTIPR-- 68
GD+I+ V+ + MS + +L+ + +++V+ P+ + R
Sbjct: 117 ARAGDVIVTVDGTAVKGMSLYDVSDLLQ---GEADSQVEVVLHAPGAPSNTRTLQLTRQK 173
Query: 69 --TEPVR--PIDPGAWVAHTAAIRGDGFPFLRVN 98
PV A A ++R+
Sbjct: 174 VTINPVTFTTCSNVAAAALPPGAAKQQLGYVRLA 207
>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 126
Score = 36.8 bits (85), Expect = 2e-04
Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+GG G + GD I++VN + + + + +++ ++L V
Sbjct: 69 KEGGPAFEAG-LCTGDRIIKVNGESVIGKTYSQVIALIQ---NSDTTLELSV 116
>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70
kDa, Na/PI cotransporter C- terminal-associated
protein, NAPI-CAP1; NMR {Mus musculus}
Length = 114
Score = 35.9 bits (83), Expect = 4e-04
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G+ A + GD +L++N + + + + V ++R+
Sbjct: 48 GSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 84
>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain,
adaptor protein, SR-BI, signaling protein; 1.30A {Mus
musculus} PDB: 3r69_A*
Length = 95
Score = 35.3 bits (82), Expect = 5e-04
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVA 53
G G ++ D+++ VN + E + +D V ++R + L+V
Sbjct: 38 PGSPAEAAG-LKNNDLVVAVNGKSVEALDHDGVVEMIR---KGGDQTTLLVL 85
>2ego_A General receptor for phosphoinositides 1- associated scaffold
protein; PDZ domain, ligand-free, protein binding;
1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A
Length = 96
Score = 35.4 bits (82), Expect = 6e-04
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+ L G + PGD I VN +N E + + E V +++
Sbjct: 46 ESSPAQLAG-LTPGDTIASVNGLNVEGIRHREIVDIIKA 83
>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus
norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A
3o5n_A*
Length = 109
Score = 35.6 bits (82), Expect = 7e-04
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G VA + GD +++VN N + + + V ++R+
Sbjct: 55 GGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 91
>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil,
PDZ, guanine-nucleotide releasing factor,
phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Length = 132
Score = 35.7 bits (82), Expect = 7e-04
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G VA + GD +++VN N + + + V ++R+
Sbjct: 75 GGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQ 111
>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI,
signaling protein; 1.80A {Mus musculus}
Length = 106
Score = 35.1 bits (81), Expect = 8e-04
Identities = 8/37 (21%), Positives = 20/37 (54%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G+ A + GD +L++N + + + + V ++R+
Sbjct: 36 GSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRK 72
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 34.1 bits (77), Expect = 0.004
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNPKGYFTIPR 68
++PGD I+Q N +F N+ + +AV +L+ ++ N R
Sbjct: 38 SKLLQPGDKIIQANGYSFINIEHGQAVSLLK----TFQNTVELIIVREVGNGAKQEIRVR 93
Query: 69 TEPVRPIDPGAWVAH 83
E + V
Sbjct: 94 VEKDGGSGGVSSVPT 108
>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Mus musculus}
Length = 118
Score = 31.3 bits (70), Expect = 0.027
Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVVAKCWDPNP 60
+ I PGD IL++N + +E +++ ++L++ DP P
Sbjct: 53 RMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQT---SQTLQLLIEH--DPVP 107
Query: 61 K 61
+
Sbjct: 108 Q 108
>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 30.8 bits (69), Expect = 0.043
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+A ++ GD IL++N+ + +++ L +
Sbjct: 54 TGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 90
>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ,
cell junction, cell adhesion, signaling protein,
nucleotide exchange factor; 1.30A {Homo sapiens} PDB:
3kze_A
Length = 94
Score = 30.3 bits (68), Expect = 0.048
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 4 GAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
+A ++ GD IL++N+ + +++ L +
Sbjct: 45 TGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 81
>3k50_A Putative S41 protease; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative;
2.00A {Bacteroides fragilis nctc 9343}
Length = 403
Score = 31.3 bits (71), Expect = 0.052
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVR 36
++ G I+ +N E ++
Sbjct: 108 LQRGHWIMMMNGDYITKKVESELLQ 132
>2pa2_A 60S ribosomal protein L10; QM protein, , structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 2.50A {Homo sapiens} SCOP: d.41.4.1
Length = 151
Score = 29.2 bits (65), Expect = 0.20
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 57
G R+ G +I+ I + + + + LR K PG K+ ++K W
Sbjct: 88 FGKPQGTVARVHIGQVIMS---IRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWG 141
>3j0l_J Ribosomal protein L10; mammalia, translation, elongation cycle,
tRNA, ribosome; 9.80A {Oryctolagus cuniculus} PDB:
3j0q_J 3izc_I 3izs_I 3o58_J 3o5h_J 3u5e_I 3u5i_I
Length = 219
Score = 28.1 bits (62), Expect = 0.51
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 57
G L R++ G +I + ++ + D V LR K PG K++++K W
Sbjct: 117 WGKPHGLAARVDIGQIIFS---VRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWG 170
>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high
affinity ligand, protein BIND; 1.70A {Homo sapiens}
Length = 112
Score = 27.6 bits (62), Expect = 0.53
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
I+ GD+I++VN + S L+E V P+ L V
Sbjct: 53 IQDGDIIVKVNGRPLVDSSE------LQEAVLTESPLLLEV 87
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase;
2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Length = 451
Score = 27.3 bits (61), Expect = 1.2
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVV-QKPGPIKLVV 52
+ I PGD+I+ N ++ + L+ + +K + + V
Sbjct: 394 SENSAGWRAGIRPGDIIISANKKPVTDVKS------LQTIAQEKKKELLVQV 439
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB:
3nzi_A 3nwu_A 2ytw_A 2joa_A
Length = 332
Score = 27.2 bits (61), Expect = 1.2
Identities = 6/41 (14%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
++ D+I+ +N + + ++ + +V+++ + +VV
Sbjct: 272 LKENDVIISINGQSVVSAND------VSDVIKRESTLNMVV 306
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone,
hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A
4a9g_A
Length = 436
Score = 27.2 bits (61), Expect = 1.2
Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLV 51
+ G+ A ++ D+I+ VN +++ +R+V+ I +
Sbjct: 370 VVKGSPAAQAGLQKDDVIIGVNRDRVNSIAE------MRKVLAAKPAIIAL 414
>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell
membrane, hydrolase, membrane, protease, serine
protease, transmembrane; NMR {Bacillus subtilis}
Length = 91
Score = 26.1 bits (58), Expect = 1.3
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVV--QKPG-PIKLVV 52
G+IE GD I+ + N+++ L + + +K G + L +
Sbjct: 15 KGKIEVGDKIISADGKNYQSAEK------LIDYISSKKAGDKVTLKI 55
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 26.9 bits (60), Expect = 1.4
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLV 51
K G A ++ GD+I+ N +N++ LR+V+ + +
Sbjct: 391 KTGTPAAQIGLKKGDVIIGANQQAVKNIAE------LRKVLDSKPSVLAL 434
>3iz5_I 60S ribosomal protein L10 (L10E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_I 1s1i_I 3jyw_I
Length = 224
Score = 26.6 bits (58), Expect = 1.6
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 57
G R++ G ++L + + + A LR K PG K++ ++ W
Sbjct: 119 FGKPQGTCARVDIGQVLLS---VRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWG 172
>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Listeria monocytogenes}
PDB: 2kjk_A 3i1e_A
Length = 100
Score = 26.1 bits (58), Expect = 1.7
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 52
+ GD+I +++ F++ E + + +K G +K+
Sbjct: 21 ADVLHAGDLITEIDGNAFKSS--QEFIDYIHS--KKVGDTVKINY 61
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural
genomics consortium, SGC, coiled coil, metal-binding,
phosphoprotein; 1.80A {Homo sapiens}
Length = 389
Score = 26.4 bits (59), Expect = 2.0
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 71 PVRPIDPGAWVAHTAAIRGDG 91
V I G+ A T + D
Sbjct: 212 RVVDIACGSGDAQTLCLTDDD 232
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding,
nucleotide serine/threonine-protein kinase, transferase,
signaling Pro; HET: ACP; 1.80A {Dictyostelium
discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Length = 287
Score = 26.5 bits (59), Expect = 2.2
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 26 FENMSNDEAVRVLREVVQK----------PGPIKLVVAKCWDPNPK 61
F+ S ++ + + ++ P ++ V+ CW +PK
Sbjct: 228 FDEYSY-GKIKFINMIREEGLRPTIPEDCPPRLRNVIELCWSGDPK 272
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 26.4 bits (58), Expect = 2.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 3 GGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G ++GR+ G ++ + D+ S +AV +
Sbjct: 137 GAGNQIEGRVTKGQKMVIIEDLISTGGSVLDAVAAAQR 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 2.2
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)
Query: 8 LDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV-AKCWDPNPKGYFTI 66
L +I+P + N + + + R + KP L+V + F +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium; NMR {Geobacillus thermodenitrificans}
Length = 94
Score = 25.7 bits (57), Expect = 2.4
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 52
GR+E GD I ++ + V +RE ++ G +++
Sbjct: 19 AGRLEAGDRIAAIDGQPINTSE--QIVSYVRE--KQAGDRVRVTF 59
>2zkr_h 60S ribosomal protein L10; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 214
Score = 25.8 bits (56), Expect = 3.0
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 4/57 (7%)
Query: 2 KGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQK-PGPIKLVVAKCWD 57
G ++ G +I+ I + + + + LR K PG K+ ++K W
Sbjct: 119 FGKPQGTVAKVHIGQVIMS---IRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWG 172
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP
complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae}
PDB: 2pry_A* 2prz_A*
Length = 226
Score = 26.0 bits (57), Expect = 3.1
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 1 MKGGAVALDGRIEPGDMILQVNDINFENMSNDEAVRVLRE 40
G + G IL ++D+ + +EA ++
Sbjct: 111 DHGEGGIIVGSALENKRILIIDDVMTAGTAINEAFEIISN 150
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina
thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A
1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Length = 247
Score = 26.0 bits (57), Expect = 3.2
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Query: 58 PNPKGYFTIPRTEPVRPIDPGAWVAHTAAIRGD 90
NP + + PV IDP A++ A++ G+
Sbjct: 47 ENPVTPWNPEPSAPV--IDPTAYIDPQASVIGE 77
>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein
structure initiative; NMR
{Methanothermobacterthermautotrophicus} SCOP: b.36.1.6
Length = 125
Score = 25.6 bits (56), Expect = 3.4
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 9 DGRIEPGDMILQVNDINFENMSNDEAVRVLREVVQKPG-PIKLVV 52
+ PG +I +N + N++ L+ G I +
Sbjct: 39 SKVLTPGLVIESINGMPTSNLT--TYSAALKT--ISVGEVINITT 79
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold,
nucleic acid binding, D binding protein; 1.06A
{Silurana} PDB: 4a4i_A
Length = 90
Score = 25.1 bits (55), Expect = 3.6
Identities = 8/39 (20%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 56 WDPNPKGY-FTIPRTEPVRPIDPGAWV-AHTAAIRGDGF 92
W G+ F + P++ V H + + +GF
Sbjct: 15 WFNVRMGFGFISMTSREGSPLENPVDVFVHQSKLYMEGF 53
>1xsz_A Guanine nucleotide exchange protein; ARF guanine nucleotide
exchange factor, signaling protein; 1.41A {Legionella
pneumophila} SCOP: a.118.3.1 d.129.9.1 PDB: 1xt0_B
Length = 356
Score = 25.8 bits (56), Expect = 3.7
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 21 VNDINFENMSNDEAVRVLREVVQKPG 46
+ +NF S E +R + + PG
Sbjct: 79 TSQMNFNGQSFVEGLRTFLKTFKLPG 104
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET:
ATP; 3.46A {Homo sapiens}
Length = 319
Score = 25.4 bits (56), Expect = 4.5
Identities = 5/43 (11%), Positives = 12/43 (27%), Gaps = 7/43 (16%)
Query: 26 FENMSNDEAVRV-----LREVVQK--PGPIKLVVAKCWDPNPK 61
F+ + + + Q I ++ CW +
Sbjct: 243 FKTQPAEAIIWQMGTGMKPNLSQIGMGKEISDILLFCWAFEQE 285
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 25.4 bits (55), Expect = 4.6
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 21 VNDINFENMSNDEAVRVLREVVQKPG 46
V F +++ +A+R + PG
Sbjct: 83 VELHEFADLNLVQALRQFLWSFRLPG 108
>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein
structure initiative, NEW YORK structural research
consortium, nysgxrc; 2.71A {Toxoplasma gondii}
Length = 377
Score = 25.4 bits (55), Expect = 4.9
Identities = 5/30 (16%), Positives = 9/30 (30%)
Query: 26 FENMSNDEAVRVLREVVQKPGPIKLVVAKC 55
F + + A+ + L AK
Sbjct: 273 FAHFRSHAAIAAAIALYPVSPETVLDAAKA 302
>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria,
peptid module, hydrolase; 2.75A {Homo sapiens} SCOP:
b.36.1.4
Length = 113
Score = 25.0 bits (55), Expect = 4.9
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ PGD+IL + + +N + + E V+ + + +
Sbjct: 53 LRPGDVILAIGEQMVQNAED------VYEAVRTQSQLAVQI 87
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha,
guanine-nucleotide releasing factor, signaling PR; 2.20A
{Homo sapiens} PDB: 3l8n_A 3swv_A
Length = 211
Score = 25.1 bits (55), Expect = 6.4
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 21 VNDINFENMSNDEAVRVLREVVQKPG 46
V+ +F A+R+ E + PG
Sbjct: 87 VDQHDFSGKDFVSALRMFLEGFRLPG 112
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine
nucleotide exchange factor (GEF), ARF small GTP-binding
proteins; 1.93A {Saccharomyces cerevisiae} SCOP:
a.118.3.1 PDB: 1re0_B*
Length = 230
Score = 25.2 bits (55), Expect = 6.5
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 21 VNDINFENMSNDEAVRVLREVVQKPG 46
+ +F + DEA+R+L + PG
Sbjct: 92 IRLFDFSGLRVDEAIRILLTKFRLPG 117
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta
helix, gamma carbonic anhydrase, disulfide dependent
activity; 1.10A {Thermosynechococcus elongatus} PDB:
3kwe_A 3kwc_A
Length = 213
Score = 25.1 bits (55), Expect = 6.5
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 65 TIPRTEPVRP-IDPGAWVAHTAAIRGD 90
T + P I P A+V + + GD
Sbjct: 31 TPWSRDLAEPEIAPTAYVHSFSNLIGD 57
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage
kinase, MLK family, MLK1 and MLK3 subtype selective
inhibitors; HET: VIN; 2.60A {Homo sapiens}
Length = 271
Score = 24.9 bits (55), Expect = 6.9
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 13/46 (28%)
Query: 26 FENMSNDEAVRVLREVVQK----------PGPIKLVVAKCWDPNPK 61
F + + V V P P ++ CW+P+P
Sbjct: 214 FRGIDG---LAVAYGVAMNKLALPIPSTCPEPFAKLMEDCWNPDPH 256
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation,
binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4
b.47.1.1
Length = 325
Score = 24.9 bits (55), Expect = 7.0
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 12 IEPGDMILQVNDINFENMSNDEAVRVLREVVQKPGPIKLVV 52
+ PGD+IL + + +N + + E V+ + + +
Sbjct: 274 LRPGDVILAIGEQMVQNAED------VYEAVRTQSQLAVQI 308
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang
complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1
PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Length = 203
Score = 24.7 bits (54), Expect = 7.0
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 21 VNDINFENMSNDEAVRVLREVVQKPG 46
V+ F +++ +A+R + PG
Sbjct: 81 VDLHEFTDLNLVQALRQFLWSFRLPG 106
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 24.7 bits (53), Expect = 7.4
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 26 FENMS----NDEAVRVLREVVQKPGP-IKLVVAKC--WDPNPKGYF 64
FEN++ +E + + + + KC WD K Y+
Sbjct: 171 FENIAIELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKLYY 216
>1gjj_A LAP2; inner nuclear membrane protein, lamin-associated polypeptide,
LEM domain, multidimensional dipolar couplings; NMR
{Homo sapiens} SCOP: a.140.1.1 a.140.1.1 PDB: 1h9e_A
1h9f_A
Length = 168
Score = 24.5 bits (52), Expect = 9.2
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 20 QVNDINFENMSNDEAVRVLREVVQKPGPI 48
+D++ ++N++ + L + PGPI
Sbjct: 106 DKDDLDVTELTNEDLLDQLVKYGVNPGPI 134
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase
activator complex; HET: ADN; 2.00A {Homo sapiens}
Length = 307
Score = 24.6 bits (54), Expect = 9.4
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 45 PGPIKLVVAKCWDPNPK 61
P PI+ ++ +CW +P
Sbjct: 230 PKPIESLMTRCWSKDPS 246
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.141 0.447
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,924,735
Number of extensions: 109946
Number of successful extensions: 580
Number of sequences better than 10.0: 1
Number of HSP's gapped: 575
Number of HSP's successfully gapped: 229
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)