BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10300
(1490 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 268 bits (685), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 210/359 (58%), Gaps = 24/359 (6%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+++ CYFTNWA YR G+++P DI+ LCTH+IY FA + +++ W D+
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV--TL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ LK K +K LAIGGWN ++ +V++ + R FI V+ F+ ++ FDGL
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAV 1313
D DWEYP + P DK F L++E+R AF N L+++AAV+ +
Sbjct: 115 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 1314 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLHYW 1371
I + Y+IP +S+ LD+I VMTYD HG W+ TG +P+Y P DT N +Y ++YW
Sbjct: 170 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 229
Query: 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1431
+GA +K+I G P YG +F L++ + G+ + T G AG + G AYYEIC +
Sbjct: 230 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFL 289
Query: 1432 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
K+G D + + PYA++G+ WVG+D+ KA+++K+N GGAM+WA+DLDDF
Sbjct: 290 -KNGATQGWDAPQEV-PYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
Score = 217 bits (552), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 162/279 (58%), Gaps = 22/279 (7%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+++ CYFTNWA YRPG G+++P+DI LCTH++Y FA + + + W D
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV--TL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ LK K +K LAIGGWN ++ +V++ RQ FI V+KFL +Y+FDGL
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGT-APFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 920
D DWEYP P DK F + V+E+ +AF+ L+++AAV+
Sbjct: 115 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYW 978
I + Y++ LS+ LD+I VMTYD HG W+ TG +PLY++P D Y N ++ MNYW
Sbjct: 170 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 229
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GAP+ KL++G P YG F L+N ++ G+ A GAG
Sbjct: 230 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAG 268
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 30/380 (7%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+Q+ CY + YR F ++ P +CTH+IYA+A + I + DV
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN---DVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++F GLK N +LK LA+ + F ++ S E+R FI+SV++ Y+FDGLD
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQL-------TLTSPGVID 290
+ + P S ++ F+ +QE+ + Q+ T I
Sbjct: 116 FDWEYPG-------SRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGIS 168
Query: 291 RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN-FNNIESAV 349
S +I ++ +D I + ++ D N+ + T T +N + N++ +
Sbjct: 169 NIQSGYEIPQLSQYLDYIHVMTY--DLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVM 226
Query: 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 409
W GA E++I+G P +G ++ L N S G+GA G G G Y + G A++E+C
Sbjct: 227 NYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEIC 286
Query: 410 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469
K+ + + P+ + + W+ Y+N S K ++K GGAM+W +DLDDF
Sbjct: 287 TFLKNGATQGWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
Query: 470 RG-FCGQ-KYPLLSAVVSNL 487
G FC Q K+PL+S + L
Sbjct: 347 TGTFCNQGKFPLISTLKKAL 366
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 268 bits (685), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 203/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 168/279 (60%), Gaps = 22/279 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L + W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQL---STTEWND--ETLY 56
Query: 811 ERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT 269
Score = 197 bits (500), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 133/476 (27%), Positives = 231/476 (48%), Gaps = 40/476 (8%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 298
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTP 235
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 476
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 477 YPLLSAVVSNLQPDMETPMKSTTESQSQELELVEDELTTIRTQRPTRPATSSWWTPITTT 536
YPL + L+ ++ P L EL + +P+ P
Sbjct: 354 YPL----IQTLRQELSLPY----------LPSGTPELEVPKPGQPSEPEHGP-------- 391
Query: 537 ESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWS 592
S ++ + +G Y P+P + SF C+ G L +QSC L+++ K C W+
Sbjct: 392 -SPGQDTFCQGKADGLY-PNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTWN 445
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex With
Bisdionin F
Length = 381
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/361 (38%), Positives = 211/361 (58%), Gaps = 24/361 (6%)
Query: 1141 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDN 1200
+ +++ CYFTNWA YR G+++P DI+ LCTH+IY FA + +++ W D+
Sbjct: 3 EAYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV-- 57
Query: 1201 KFYEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
Y+ LK K +K LAIGGWN ++ +V++ + R FI V+ F+ ++ FD
Sbjct: 58 TLYQAFNGLKNKNSQLKTLLAIGGWNFGTA-PFTAMVSTPENRQTFITSVIKFLRQYEFD 116
Query: 1259 GLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSK 1311
GLD DWEYP + P DK F L++E+R AF N L+++AAV+
Sbjct: 117 GLDFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGI 171
Query: 1312 AVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLH 1369
+ I + Y+IP +S+ LD+I VMTYD HG W+ TG +P+Y P DT N +Y ++
Sbjct: 172 SNIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMN 231
Query: 1370 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD 1429
YW +GA +K+I G P YG +F L++ + G+ + T G AG + G AYYEIC
Sbjct: 232 YWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICT 291
Query: 1430 KIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
+ K+G D + + PYA++G+ WVG+D+ KA+++K+N GGAM+WA+DLDD
Sbjct: 292 FL-KNGATQGWDAPQEV-PYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
Query: 1490 F 1490
F
Sbjct: 350 F 350
Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 113/279 (40%), Positives = 162/279 (58%), Gaps = 22/279 (7%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+++ CYFTNWA YRPG G+++P+DI LCTH++Y FA + + + W D
Sbjct: 5 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTI---EWNDV--TL 59
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ LK K +K LAIGGWN ++ +V++ RQ FI V+KFL +Y+FDGL
Sbjct: 60 YQAFNGLKNKNSQLKTLLAIGGWNFGT-APFTAMVSTPENRQTFITSVIKFLRQYEFDGL 118
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 920
D DWEYP P DK F + V+E+ +AF+ L+++AAV+
Sbjct: 119 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 173
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYW 978
I + Y++ LS+ LD+I VMTYD HG W+ TG +PLY++P D Y N ++ MNYW
Sbjct: 174 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 233
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GAP+ KL++G P YG F L+N ++ G+ A GAG
Sbjct: 234 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAG 272
Score = 154 bits (389), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 108/380 (28%), Positives = 179/380 (47%), Gaps = 30/380 (7%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+Q+ CY + YR F ++ P +CTH+IYA+A + I + DV
Sbjct: 5 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN---DVTL-- 59
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++F GLK N +LK LA+ + F ++ S E+R FI+SV++ Y+FDGLD
Sbjct: 60 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 119
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQL-------TLTSPGVID 290
+ + P S ++ F+ +QE+ + Q+ T I
Sbjct: 120 FDWEYPG-------SRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGIS 172
Query: 291 RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN-FNNIESAV 349
S +I ++ +D I + ++ D N+ + T T +N + N++ +
Sbjct: 173 NIQSGYEIPQLSQYLDYIHVMTY--DLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVM 230
Query: 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 409
W GA E++I+G P +G ++ L N S G+GA G G G Y + G A++E+C
Sbjct: 231 NYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEIC 290
Query: 410 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469
K+ + + P+ + + W+ Y+N S K ++K GGAM+W +DLDDF
Sbjct: 291 TFLKNGATQGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDF 350
Query: 470 RG-FCGQ-KYPLLSAVVSNL 487
G FC Q K+PL+S + L
Sbjct: 351 TGTFCNQGKFPLISTLKKAL 370
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 203/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 EKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 168/279 (60%), Gaps = 22/279 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L + W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQL---STTEWND--ETLY 56
Query: 811 ERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 EKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT 269
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 191/371 (51%), Gaps = 16/371 (4%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 298
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTP 235
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 476
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 477 YPLLSAVVSNL 487
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling Protein
From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein Liganded
With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 268 bits (684), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 210/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWN-FGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +K + + G G+ T+ +G LAYYEICD +Q
Sbjct: 225 LGAPANKLVMGIPTFGKSFTLA-SSKTDVGAPVSGPGIPGQFTKEKGILAYYEICDFLQ- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 157/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-PQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP DK V+E+ F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGKSFTLASSKTDVGAPVSGPG 260
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/375 (32%), Positives = 186/375 (49%), Gaps = 36/375 (9%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 351
+ DI+ ++ +D I L ++ D V ++ + + F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTY--DFHGAWRQTVGHHSPLFRGQEDASSRFSNADYAVSY 221
Query: 352 WIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNK 411
++ GA ++++GIP FGKS+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 222 MLRLGAPANKLVMGIPTFGKSFTLAS-SKTDVGAPVSGPGIPGQFTKEKGILAYYEICDF 280
Query: 412 FKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
+ T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFRG
Sbjct: 281 LQGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRG 339
Query: 472 -FCGQK--YPLLSAV 483
FCGQ +PL SAV
Sbjct: 340 TFCGQNLTFPLTSAV 354
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/358 (41%), Positives = 212/358 (59%), Gaps = 30/358 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K+VCY+T+W+ YR+ G P +D LCTH+IY FA + D + DTW D
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y + LK + +K L++GGWN + ++S++ ++ Q+R FI V F+ H FDGL
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFGS-QRFSKIASNTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DKQ F LIKE++A F LLLSAA+S K I
Sbjct: 115 DLAWLYPG----------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT--FNANYSLHYWV 1372
D++YDI +S++LD+IS+MTYD+HG W TGH +P++ D +P N +Y++ Y +
Sbjct: 165 DSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYML 224
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
GA K++ G+P +G+SFTLA ++ G+ + G G T+ G LAYYEICD ++
Sbjct: 225 RLGAPASKLVMGIPTFGRSFTLA-SSETGVGAPISGPGIPGRFTKEAGTLAYYEICDFLR 283
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G V R +++ PYA KG+QWVG+DDQ + K +++K L GAM+WALDLDDF
Sbjct: 284 --GATVHRILGQQV-PYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDF 338
Score = 187 bits (474), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 104/280 (37%), Positives = 165/280 (58%), Gaps = 29/280 (10%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K+VCY+T+W+ YR G G P+ + LCTHI+Y FA + ++++ D+W D
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANISNDHI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y + TLK + +K L++GGWN ++S++ ++ +R+ FI+ V FL + FDGL
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFG-SQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP DK+ F ++E+ F LLLSAA+S K I
Sbjct: 115 DLAWLYPG----------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD---DFFYFNANFTMNYW 978
+++YD+ +S+ LD+IS+MTYD+HG W TGH +PL+ +D D F N ++ + Y
Sbjct: 165 DSSYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFS-NTDYAVGYM 223
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
++ GAP+ KLVMG+P +G++F+LA S++ G+ A G G+
Sbjct: 224 LRLGAPASKLVMGIPTFGRSFTLA-SSETGVGAPISGPGI 262
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 117/379 (30%), Positives = 190/379 (50%), Gaps = 35/379 (9%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+++VCY + S YR + + +CTH+IY++A I S I DV
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANI---SNDHIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y LK NP LK L+V F I S+ +SR FI SV + FDGLD
Sbjct: 56 YGMLNTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR----NNYQLTLTSPGVIDRKT 293
L P ++ F+T I+E+ + + QL L++ + T
Sbjct: 116 LAWLYPG------------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVT 163
Query: 294 --SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 351
S DI+ ++ +D I + +++ H + Q ++ F+N + AV
Sbjct: 164 IDSSYDIAKISQHLDFISIMTYDF-HGAWRGTTGHHSPLFRGQEDASPDRFSNTDYAVGY 222
Query: 352 WIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNK 411
++ GA ++++GIP FG+S+ L + SE G+GA + GPG G++T+ G LA++E+C+
Sbjct: 223 MLRLGAPASKLVMGIPTFGRSFTLAS-SETGVGAPISGPGIPGRFTKEAGTLAYYEICDF 281
Query: 412 FKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
+ T H P+ K ++W+ Y++ +S++ K+ Y+KDR L GAM+W LDLDDF+G
Sbjct: 282 LRGAT-VHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQG 340
Query: 472 -FCGQ--KYPLLSAVVSNL 487
FCGQ ++PL +A+ L
Sbjct: 341 SFCGQDLRFPLTNAIKDAL 359
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 267 bits (683), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 203/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 218 bits (554), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 168/279 (60%), Gaps = 22/279 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L + W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQL---STTEWND--ETLY 56
Query: 811 ERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT 269
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 191/371 (51%), Gaps = 16/371 (4%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 298
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTP 235
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 476
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 477 YPLLSAVVSNL 487
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 267 bits (682), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 202/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y + + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 217 bits (553), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 167/279 (59%), Gaps = 22/279 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L + W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQL---STTEWND--ETLY 56
Query: 811 ERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ + N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT 269
Score = 179 bits (455), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 191/371 (51%), Gaps = 16/371 (4%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 298
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTP 235
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 476
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 477 YPLLSAVVSNL 487
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 266 bits (681), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 202/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGT-QKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------NPHDLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y + + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + +++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQKV-PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 217 bits (553), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 112/279 (40%), Positives = 167/279 (59%), Gaps = 22/279 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L + W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQL---STTEWND--ETLY 56
Query: 811 ERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDD--FFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ + N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGT 269
Score = 179 bits (455), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 110/371 (29%), Positives = 191/371 (51%), Gaps = 16/371 (4%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + L + + + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGM--TNHQLSTTEWNDETL---Y 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI 298
+ + P E D + Q+ + T + L+ P + ++
Sbjct: 117 DWEYPGSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEV 176
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
+A +D + L +++ H E V + Q S A N+++AV W++KG
Sbjct: 177 DKIAQNLDFVNLMAYDF-HGSWEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTP 235
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA++EVC+ +K T +
Sbjct: 236 ASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS-WKGATKQ 294
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CGQ-K 476
D P++ + ++W+ +++ +S + K++Y+K + LGGAM+W LDLDDF GF C Q +
Sbjct: 295 RIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGR 353
Query: 477 YPLLSAVVSNL 487
YPL+ + L
Sbjct: 354 YPLIQTLRQEL 364
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence Of
Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein From
Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide (Nag6)
And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 208/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S + + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++A D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPVSGPGVPGRFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 180 bits (457), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 156/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S + + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP DK V+E+ F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDVGAPVSGPG 260
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 188/376 (50%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F +I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+S+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40 In
The Presense Of N,n',n''-triacetyl-chitotriose At 2.6a
Resolution
Length = 361
Score = 264 bits (674), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 208/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +G + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 157/277 (56%), Gaps = 28/277 (10%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLG-GKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866
Y+ + TLK + +K L++GGWN G ++S++ + +R+ FI+ V FL + FDG
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN--FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDG 113
Query: 867 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQV 920
LDL W YP DK V+E+ F LLLSAAVS K
Sbjct: 114 LDLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWM 979
I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ ++Y +
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYML 223
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
+ GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 224 RLGAPANKLVMGIPTFGRSFTLASSKTDGGAPISGPG 260
Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 185/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+S+ L + G GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A Tripeptide
Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling Protein
With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling Protein
With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 263 bits (672), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 209/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 181 bits (460), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 156/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP DK V+E+ F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDVGAPISGPG 260
Score = 163 bits (413), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+S+ L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 263 bits (672), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 208/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN-FGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLA-SSKTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 102/276 (36%), Positives = 157/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP DK V+E+ F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDVGAPVSGPG 260
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 121/376 (32%), Positives = 187/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY +A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+S+ L + S+ +GA V GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary Gland
Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 207/357 (57%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S + + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGP-ERFSAIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA +G + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 181 bits (458), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 103/277 (37%), Positives = 156/277 (56%), Gaps = 28/277 (10%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLG-GKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866
Y+ + TLK + +K L++GGWN G ++S + + +R+ FI+ V FL + FDG
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWN--FGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDG 113
Query: 867 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQV 920
LDL W YP DK V+E+ F LLLSAAVS K
Sbjct: 114 LDLAWLYPG----------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWM 979
I+ YD+ +S LD+IS++TYD+HG W + GH +PL+ D F NA++ ++Y +
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFSNADYAVSYML 223
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
+ GAP+ KLVMG+P +G++F+LA+S D G + PG
Sbjct: 224 RLGAPANKLVMGIPTFGRSFTLASSKTDGGAPISGPG 260
Score = 163 bits (412), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 119/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F +I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ + ++E+ + R T L S V K +
Sbjct: 116 LAWLYPG------------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+S+ L + G GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SAV
Sbjct: 339 GTFCGQNLTFPLTSAV 354
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling Protein
From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 260 bits (665), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 211/357 (59%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN + ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP W+ DK+ L+KE++A F LLLSAAV+ K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+S+TLA + + + G G+ T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 157/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP W+ DK V+E+ F LLLSAAV+ K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W GH +PL+ D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANSNDH-GLNAAAPG 1015
GAP+ KLVMG+P +G++++LA+S+ G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSSTRVGAPISGPG 260
Score = 164 bits (416), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 186/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+SY L + S +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLASSSTR-VGAPISGPGIPGQFTKEKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 259 bits (662), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 211/357 (59%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN + ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGS-ERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W YP W+ DK+ L+KE++A F LLLSAAV K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W GH +P++ +D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+S+TLA +K + + G G+ T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLA-SSKTDVGAPISGPGIPGQFTKEKGTLAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 101/276 (36%), Positives = 156/276 (56%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFG-SERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W YP W+ DK V+E+ F LLLSAAV K I
Sbjct: 115 DLAWLYPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W GH +PL+ D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++++LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPG 260
Score = 164 bits (414), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLYPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+SY L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGTLAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 210/357 (58%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWN-YGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF------NPHDLLLSAAVSPSKAVI 1314
DL W +P W+ DK+ L+KE++A F LLLSAAV+ K I
Sbjct: 115 DLAWLWPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF-NANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + F NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+S+TLA +K + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLA-SSKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLH- 282
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R R +++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 283 -GATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 159/276 (57%), Gaps = 26/276 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNYG-SQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVI 921
DL W +P W+ DK V+E+ F LLLSAAV+ K I
Sbjct: 115 DLAWLWPG-WR---------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF-NANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D F NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANS-NDHGLNAAAPG 1015
GAP+ KLVMG+P +G++++LA+S D G + PG
Sbjct: 225 LGAPANKLVMGIPTFGRSYTLASSKTDVGAPISGPG 260
Score = 166 bits (421), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 120/376 (31%), Positives = 187/376 (49%), Gaps = 38/376 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY++A I S I DV
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANI---SNNEIDTWEWNDVTL-- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT---LTSPGVIDRKTS 294
L P ++ +T ++E+ + R T L S V K +
Sbjct: 116 LAWLWPGWR------------DKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIA 163
Query: 295 L---VDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ DI+ ++ +D I L +++ + V P + N +S F+N + AV
Sbjct: 164 IDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASS---RFSNADYAVS 220
Query: 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCN 410
++ GA ++++GIP FG+SY L + S+ +GA + GPG G++T+ G LA++E+C+
Sbjct: 221 YMLRLGAPANKLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGRFTKWKGILAYYEICD 279
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470
T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W LDLDDFR
Sbjct: 280 FLHGATTHRFRDQQ-VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFR 338
Query: 471 G-FCGQK--YPLLSAV 483
G FCGQ +PL SA+
Sbjct: 339 GTFCGQNLTFPLTSAI 354
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 216/362 (59%), Gaps = 35/362 (9%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K+VCYFTNW+ RQ GK+ P +ID LC+H+IY FA ++ ++++IK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNK-YSRLVNSQQARSKFIAHVVNFILEHNFDG 1259
Y+ + +LK K +K+ L+IGG+ G+K + +V+S +R +FI ++ F+ HNFDG
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGY--LFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDG 114
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKA 1312
LD+ W YP + F LI EL AF LLL+A VS +
Sbjct: 115 LDVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQ 164
Query: 1313 VIDNAYDIPVMSENLDWISVMTYDYHGQWDKK--TGHVAPMYALPNDTTPT--FNANYSL 1368
+IDN+Y + ++++LD+I+++++D+HG W+K TGH +P+ D P+ +N Y++
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 1369 HYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1428
YW+ G +KV+ G+P YG SFTLA + + G AG T + GFLAYYEIC
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPASGPGAAGPITESSGFLAYYEIC 283
Query: 1429 DKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
++ G + R + +++ PYA KG+QWVG+DD + K +F+K +LGGAMIW++D+D
Sbjct: 284 QFLK--GAKITRLQDQQV-PYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMD 340
Query: 1489 DF 1490
DF
Sbjct: 341 DF 342
Score = 182 bits (461), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 103/283 (36%), Positives = 166/283 (58%), Gaps = 32/283 (11%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K+VCYFTNW+ R GK+ PE+I LC+H++Y FA +++ +IIK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGK-YSRLVNSATARQRFIEHVVKFLLKYQFDG 866
Y+ + +LK K +K+ L+IGG+ G K + +V+S+T+R FI ++ FL + FDG
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGY--LFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDG 114
Query: 867 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFK-------PHGLLLSAAVSPSKQ 919
LD+ W YP + F + + EL +AF+ LLL+A VS +Q
Sbjct: 115 LDVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQ 164
Query: 920 VINAAYDVKALSESLDWISVMTYDYHGQWDKK--TGHVAPLYEHPDDD--FFYFNANFTM 975
+I+ +Y V+ L++ LD+I+++++D+HG W+K TGH +PL + D Y+N + +
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDH-GLNAAAPGAG 1017
YW+ KG PS K+VMG+P YG +F+LA++ G A+ PGA
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLASAETTVGAPASGPGAA 267
Score = 164 bits (414), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 111/380 (29%), Positives = 197/380 (51%), Gaps = 35/380 (9%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+++VCY S R P F +N+ P +C+H+IY++A+I+ ++ +I + E +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIEN-NKVIIKDKSEVML---- 56
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++ LK NP+LK+ L++ F + SRL FI+S++ + FDGLD
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLD 116
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLT----LTSPGVIDRKT 293
++ P E + F+ I EL+ +++ + T L + GV +
Sbjct: 117 VSWIYPD------------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQ 164
Query: 294 SL---VDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQ-VTSTIANFNNIESAV 349
+ + +A +D I L SF+ ++ + N+ ++ +++ N+E AV
Sbjct: 165 MIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAV 224
Query: 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 409
WI KG E++++GIP +G S+ L + +E +GA GPG G T+ G+LA++E+C
Sbjct: 225 GYWIHKGMPSEKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSGFLAYYEIC 283
Query: 410 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469
K D P+ VK ++W+ Y++ S+ K+ ++K+ +LGGAM+W++D+DDF
Sbjct: 284 QFLKGAKITRLQDQQ-VPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDF 342
Query: 470 RG-FCGQK-YPLLSAVVSNL 487
G C Q YPL+ AV +L
Sbjct: 343 TGKSCNQGPYPLVQAVKRSL 362
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1 Suggests
A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/359 (37%), Positives = 206/359 (57%), Gaps = 24/359 (6%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
++++CY+T+WA R G + P +ID LCTH+IY FA + +++ + D +
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYT-----HEQDLRD 55
Query: 1203 YEKVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
YE + LK K +K LAIGGW +S +V++ Q R FI V+ F+ ++NFDGL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPA-PFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAV 1313
+LDW+YP + P DK F+ L+KE+R AF LLL++ + V
Sbjct: 115 NLDWQYPGS-----RGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 1314 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYW 1371
I + Y IP +S++LD+I VMTYD H D TG +P+Y P D + N + + YW
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1431
HGA +K+I G P YG +F L+D +K G+ + T G+ T G LAYYE+C +
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 289
Query: 1432 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+G V D + + PYA++G++WVG+D+ KA+++K N+LGGA++W LD+DDF
Sbjct: 290 N-EGATEVWDAPQEV-PYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
Score = 174 bits (440), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 104/279 (37%), Positives = 153/279 (54%), Gaps = 22/279 (7%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
++++CY+T+WA RP +G + P +I LCTH++Y FA + + N I H+ D R
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQN-NEITYTHEQ----DLRD 55
Query: 810 YERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
YE + LK K +K LAIGGW +S +V++ RQ FI+ V++FL +Y FDGL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFG-PAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 920
+LDW+YP P DK F + V+E+ +AF+ LLL++ + V
Sbjct: 115 NLDWQYP-----GSRGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYW 978
I + Y + LS+SLD+I VMTYD H D TG +PLY+ P D N + ++YW
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GA S KL++G P YG F L++ + G+ A G
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTG 268
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 187/380 (49%), Gaps = 30/380 (7%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+Q++CY + + R +F N+ P +CTH+IYA+A + E D
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDLRD----- 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++ GLK+ N ELK LA+ + F ++ S ++R FI SV+ Y FDGL+
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLN 115
Query: 238 LNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQ-------LTLTSPGVID 290
L+ + P S ++ FS ++E+ + + LT T G+ID
Sbjct: 116 LDWQYPGSRG-------SPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIID 168
Query: 291 RKTSLVDISVVAPLVDLILLKSFN-NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAV 349
S I ++ +D I + +++ +D D P K + + A+ N ++S +
Sbjct: 169 VIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKS-ADLN-VDSII 226
Query: 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 409
W GA E++I+G P +G ++ L + S+ G+GA G GKYT G LA++EVC
Sbjct: 227 SYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVC 286
Query: 410 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469
+ + P+ + +EW+ Y+N S + K ++KD +LGGA++W LD+DDF
Sbjct: 287 TFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
Query: 470 RG-FCGQK-YPLLSAVVSNL 487
G FC Q+ +PL S + +L
Sbjct: 347 SGSFCHQRHFPLTSTLKGDL 366
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 108/406 (26%), Positives = 178/406 (43%), Gaps = 67/406 (16%)
Query: 1141 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL------------------ 1182
D +KIV Y+ +WA Y G Y +DID TH+ Y FA +
Sbjct: 10 DSYKIVGYYPSWAAY---GRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVT 66
Query: 1183 -----DTDQLVIKPH------DTWADLDNKF------------YEKVTALKKKG--VKVT 1217
+ Q + P+ D W D F ++ LK+ +K
Sbjct: 67 WTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTI 126
Query: 1218 LAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQG 1277
+++GGW S N++S + + R F V+F+ ++NFDG+DLDWEYP +D
Sbjct: 127 ISVGGWTWS--NRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSK 184
Query: 1278 PASDKQGFADLIKELR------AAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWIS 1331
DKQ + L+ ++R A + LL+ A S N ++ ++ +DWI+
Sbjct: 185 RPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANT-ELAKIAAIVDWIN 243
Query: 1332 VMTYDYHGQWDKKTGHVAPMYALPNDTTP------TFNANYSLHYWVSHGADRKKVIFGM 1385
+MTYD++G W K + H AP+ P + TFN + G K++ G+
Sbjct: 244 IMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGV 303
Query: 1386 PMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEI-CDKIQKDGWVVVRDRKR 1444
P YG+ + + NG GG+ G T G +Y++ + I K+G+ +
Sbjct: 304 PFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKNGYTRYWNDTA 361
Query: 1445 RIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
++ PY + +++ +DD + +K ++K LGGAM W L D
Sbjct: 362 KV-PYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
Score = 110 bits (275), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 82/304 (26%), Positives = 131/304 (43%), Gaps = 59/304 (19%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFA---------------------- 787
+KIV Y+ +WA Y G+ Y DI THI Y FA
Sbjct: 12 YKIVGYYPSWAAY--GR-NYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPNPVTWT 68
Query: 788 -------VLDSENLIIKAHDSWADFDNRF------------YERVVTLKKKG--VKVSLA 826
++ N I D W D F ++ LK+ +K ++
Sbjct: 69 CQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNLKTIIS 128
Query: 827 IGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 886
+GGW + ++S + +A R+ F V FL KY FDG+DLDWEYP ++ ++
Sbjct: 129 VGGW--TWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLDGNSKRP 186
Query: 887 SDKESFGLFVRELHQAFKPHGLL-----LSAAVSPSKQVINAAYDVKALSESLDWISVMT 941
DK+++ L + ++ + G + L S + A ++ ++ +DWI++MT
Sbjct: 187 EDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANTELAKIAAIVDWINIMT 246
Query: 942 YDYHGQWDKKTGHVAPLYEHPDD------DFFYFNANFTMNYWMKKGAPSRKLVMGMPMY 995
YD++G W K + H APL P D FN + G P+ KLV+G+P Y
Sbjct: 247 YDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFY 306
Query: 996 GQAF 999
G+ +
Sbjct: 307 GRGW 310
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 86/415 (20%), Positives = 172/415 (41%), Gaps = 76/415 (18%)
Query: 119 QPGT-----KHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAI---------- 163
QP T +++V Y + +AY +NV ++ P TH+ YA+A I
Sbjct: 2 QPATAEAADSYKIVGYYPSWAAYGRN---YNVADIDPTKVTHINYAFADICWNGIHGNPD 58
Query: 164 ----DPVSRALIPEDLEYDVIKGGY-----------KSFLG----------------LKE 192
+PV+ E + + G K+F G LK+
Sbjct: 59 PSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQ 118
Query: 193 ANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNX 247
NP LK ++V + F + + +R F +S ++ Y FDG+DL+ + P
Sbjct: 119 TNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGG 178
Query: 248 XXXXXLESIANERSDFSTFIQEL------SSTLRRNNYQLTLTSPGVIDRKTSLVDISVV 301
++ +++ + ++ + + Y LT+ S G + +++ +
Sbjct: 179 LDGNSKRP--EDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIAS-GASATYAANTELAKI 235
Query: 302 APLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIA-----NFNNIESAVYNWIKKG 356
A +VD I + +++ + ++ N +N ++ A N N+ + + G
Sbjct: 236 AAIVDWINIMTYDFNGAWQKIS--AHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAG 293
Query: 357 ARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT 416
++++G+PF+G+ + ++ G T G + G T G F+++ + +K
Sbjct: 294 VPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKN 351
Query: 417 W--RHFTDSNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
R++ D+ P++ +I+Y++ +S+ K YIK + LGGAM W L D
Sbjct: 352 GYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/348 (28%), Positives = 159/348 (45%), Gaps = 37/348 (10%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKFYEKVTALKK 1211
W++ SG ++IDS L TH+ FA L+ +QL+I P + + F + + +++
Sbjct: 9 WFKDSG--LALNNIDSTLFTHLFCAFADLNPQLNQLIISPEN-----QDSFRQFTSTVQR 61
Query: 1212 K--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC 1269
K VK L+I G + Y + +R FI + + F GLDLDWEYP
Sbjct: 62 KNPSVKTFLSIAG-GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLS 120
Query: 1270 WQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPV 1322
A+D L+ E R A N LLL+AAVS S V Y +
Sbjct: 121 ---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVES 171
Query: 1323 MSENLDWISVMTYDYHG-QWD-KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1380
++ NLDWI++M YD++G W +T A ++ D + + ++ W+ G KK
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKK 227
Query: 1381 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 1440
++ G+P YG ++ L + N +GL + G + G G + Y I D I + V
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVY 285
Query: 1441 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
+ +G Y + G W+ +DD + +K +VK L G W + D
Sbjct: 286 N-ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 131/256 (51%), Gaps = 30/256 (11%)
Query: 772 EDIRTDLCTHIVYGFAVLDSE-NLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGW 830
+I + L TH+ FA L+ + N +I + ++ F R + V K VK L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSF--RQFTSTVQRKNPSVKTFLSIAGG 75
Query: 831 --NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSD 888
N + G +R NS R+ FI+ ++ + F GLDLDWEYP +D
Sbjct: 76 RANSTAYGIMARQPNS---RKSFIDSSIRLARQLGFHGLDLDWEYPLS---------AAD 123
Query: 889 KESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVINAAYDVKALSESLDWISVMT 941
+ G + E A LLL+AAVS S +V Y V++L+ +LDWI++M
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 942 YDYHG-QWD-KKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
YD++G W +T A L+ D + + + +N W++ G P++KLV+G+P YG A+
Sbjct: 184 YDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAW 239
Query: 1000 SLANSNDHGLNAAAPG 1015
L N+N HGL A A G
Sbjct: 240 RLVNANIHGLRAPAAG 255
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 81/358 (22%), Positives = 154/358 (43%), Gaps = 41/358 (11%)
Query: 133 KSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI--PEDLEYDVIKGGYKSFLG- 189
K Y + + + N+ + TH+ A+A ++P LI PE+ + ++ F
Sbjct: 5 KGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD------SFRQFTST 58
Query: 190 LKEANPELKVYLAVKSNFVSITS------DRESRLNFISSVLEMFDMYKFDGLDLNVKDP 243
++ NP +K +L++ + T+ SR +FI S + + F GLDL+ + P
Sbjct: 59 VQRKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP 118
Query: 244 ALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL----VDIS 299
L+ L ++ NE + T I +T RN+ + L + + +
Sbjct: 119 -LSAADMTNLGTLLNE---WRTAI----NTEARNSGRAALLLTAAVSNSPRVNGLNYPVE 170
Query: 300 VVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESAVYNWIKKGAR 358
+A +D I L ++ D P + N+ + + ++ + I + WI+ G
Sbjct: 171 SLARNLDWINLMAY--DFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINA----WIQAGVP 224
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
+++++GIPF+G ++RL N + +GL A G G G + + + + + R
Sbjct: 225 TKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD--GSMTYNRIRDYIVES--R 280
Query: 419 HFTDSNGE---PFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 473
T N + WI+Y++ ++R K+NY+K R L G W + D G
Sbjct: 281 ATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLS 338
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 131 bits (329), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/337 (28%), Positives = 156/337 (46%), Gaps = 36/337 (10%)
Query: 1165 SDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKF--YEKVTALKKKGVKVTLAI 1220
+DIDS L TH+ FA L+ T+Q+ + + KF + + + VK L+I
Sbjct: 19 TDIDSSLFTHLFCAFADLNSQTNQVTVSSAN-----QPKFSTFTQTVQRRNPSVKTLLSI 73
Query: 1221 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280
GG + Y+ + ++ +R FI + + F GLDLDWEYP A+
Sbjct: 74 GG-GIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSS---------AT 123
Query: 1281 DKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVM 1333
+ F L++E R+A LLL+AAV S Y + ++ +LDW+++M
Sbjct: 124 EMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLM 183
Query: 1334 TYDYHG-QWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSF 1392
YD++G W + TG A ++ P++ P+ +A W+ G KK + G P YG ++
Sbjct: 184 AYDFYGPGWSRVTGPPAALFD-PSNAGPSGDAG--TRSWIQAGLPAKKAVLGFPYYGYAW 240
Query: 1393 TLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK 1452
L + N + + T G A + + G + Y +I I +G V + +G Y +
Sbjct: 241 RLTNANSHSYYAPTTGAAISPD-----GSIGYGQIRKFIVDNGATTVYN-STVVGDYCYA 294
Query: 1453 GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
G W+G+DD I K + K L G W + DD
Sbjct: 295 GTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADD 331
Score = 123 bits (309), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 26/258 (10%)
Query: 773 DIRTDLCTHIVYGFAVLDSE-NLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWN 831
DI + L TH+ FA L+S+ N + + + F + + V + VK L+IGG
Sbjct: 20 DIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFST--FTQTVQRRNPSVKTLLSIGG-G 76
Query: 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKES 891
+ Y+ + ++ T+R+ FI+ ++ Y F GLDLDWEYP+ ++ +
Sbjct: 77 IADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYPSS---------ATEMTN 127
Query: 892 FGLFVRELHQAF--------KPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYD 943
FG +RE A KP LLL+AAV S + Y V A++ SLDW+++M YD
Sbjct: 128 FGTLLREWRSAVVAEASSSGKPR-LLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYD 186
Query: 944 YHG-QWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLA 1002
++G W + TG A L++ + + + W++ G P++K V+G P YG A+ L
Sbjct: 187 FYGPGWSRVTGPPAALFDPSNAGP---SGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLT 243
Query: 1003 NSNDHGLNAAAPGAGVHP 1020
N+N H A GA + P
Sbjct: 244 NANSHSYYAPTTGAAISP 261
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 81/373 (21%), Positives = 153/373 (41%), Gaps = 41/373 (10%)
Query: 133 KSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFL-GLK 191
K++Y + F V ++ + TH+ A+A ++ + + + + +F ++
Sbjct: 6 KASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSAN----QPKFSTFTQTVQ 61
Query: 192 EANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPAL 245
NP +K L++ K+ + S+ S+ SR +FI S + + Y F GLDL+ + P
Sbjct: 62 RRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP-- 119
Query: 246 NXXXXXXLESIANERSDFSTFIQELSSTL----RRNNYQLTLTSPGVI---DRKTSLVDI 298
S A E ++F T ++E S + + L + V + + L +
Sbjct: 120 ---------SSATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPV 170
Query: 299 SVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGAR 358
S VA +D + L +++ V P + ++ +WI+ G
Sbjct: 171 SAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGPSG-----DAGTRSWIQAGLP 225
Query: 359 PEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWR 418
++ ++G P++G ++RL N + + A G + G + F V N T
Sbjct: 226 AKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISPDGSIGYGQIRKFIVDN---GATTV 282
Query: 419 HFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF---CGQ 475
+ + G+ + WI Y++N SI K+ Y K R L G W + DD G Q
Sbjct: 283 YNSTVVGD-YCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQ 341
Query: 476 KYPLLSAVVSNLQ 488
+ +A +Q
Sbjct: 342 AWDATTATTRTIQ 354
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 130 bits (327), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 159/348 (45%), Gaps = 37/348 (10%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKFYEKVTALKK 1211
W++ SG ++IDS L TH+ FA L+ +QL+I P + + F + + +++
Sbjct: 9 WFKDSG--LALNNIDSTLFTHLFCAFADLNPQLNQLIISPEN-----QDSFRQFTSTVQR 61
Query: 1212 K--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC 1269
K VK L+I G + Y + +R FI + + F GLDLDW+YP
Sbjct: 62 KNPSVKTFLSIAG-GRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYPLS 120
Query: 1270 WQVDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNAYDIPV 1322
A+D L+ E R A N LLL+AAVS S V Y +
Sbjct: 121 ---------AADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVES 171
Query: 1323 MSENLDWISVMTYDYHG-QWD-KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1380
++ NLDWI++M YD++G W +T A ++ D + + ++ W+ G KK
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKK 227
Query: 1381 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 1440
++ G+P YG ++ L + N +GL + G + G G + Y I D I + V
Sbjct: 228 LVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVY 285
Query: 1441 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
+ +G Y + G W+ +DD + +K +VK L G W + D
Sbjct: 286 N-ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
Score = 116 bits (291), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 131/256 (51%), Gaps = 30/256 (11%)
Query: 772 EDIRTDLCTHIVYGFAVLDSE-NLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGW 830
+I + L TH+ FA L+ + N +I + ++ F R + V K VK L+I G
Sbjct: 18 NNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSF--RQFTSTVQRKNPSVKTFLSIAGG 75
Query: 831 --NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSD 888
N + G +R NS R+ FI+ ++ + F GLDLDW+YP +D
Sbjct: 76 RANSTAYGIMARQPNS---RKSFIDSSIRLARQLGFHGLDLDWQYPLS---------AAD 123
Query: 889 KESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVINAAYDVKALSESLDWISVMT 941
+ G + E A LLL+AAVS S +V Y V++L+ +LDWI++M
Sbjct: 124 MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMA 183
Query: 942 YDYHG-QWD-KKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
YD++G W +T A L+ D + + + +N W++ G P++KLV+G+P YG A+
Sbjct: 184 YDFYGPNWSPSQTNSHAQLF----DPVNHVSGSDGINAWIQAGVPTKKLVLGIPFYGYAW 239
Query: 1000 SLANSNDHGLNAAAPG 1015
L N+N HGL A A G
Sbjct: 240 RLVNANIHGLRAPAAG 255
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/360 (22%), Positives = 154/360 (42%), Gaps = 41/360 (11%)
Query: 131 EAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI--PEDLEYDVIKGGYKSFL 188
K Y + + + N+ + TH+ A+A ++P LI PE+ + ++ F
Sbjct: 3 NVKGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD------SFRQFT 56
Query: 189 G-LKEANPELKVYLAVKSNFVSITS------DRESRLNFISSVLEMFDMYKFDGLDLNVK 241
++ NP +K +L++ + T+ SR +FI S + + F GLDL+ +
Sbjct: 57 STVQRKNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQ 116
Query: 242 DPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL----VD 297
P L+ L ++ NE + T I +T RN+ + L + +
Sbjct: 117 YP-LSAADMTNLGTLLNE---WRTAI----NTEARNSGRAALLLTAAVSNSPRVNGLNYP 168
Query: 298 ISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESAVYNWIKKG 356
+ +A +D I L ++ D P + N+ + + ++ + I + WI+ G
Sbjct: 169 VESLARNLDWINLMAY--DFYGPNWSPSQTNSHAQLFDPVNHVSGSDGINA----WIQAG 222
Query: 357 ARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT 416
+++++GIPF+G ++RL N + +GL A G G G + + + + +
Sbjct: 223 VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVDD--GSMTYNRIRDYIVES- 279
Query: 417 WRHFTDSNGE---PFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 473
R T N + WI+Y++ ++R K+NY+K R L G W + D G
Sbjct: 280 -RATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLS 338
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 106/401 (26%), Positives = 189/401 (47%), Gaps = 58/401 (14%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDL--CTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+VCY+ + ++ R+ GK L D++ L C+H++YG+A L + L + D+
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 1203 YEKVTALKKK--GVKVTLAIGGWND---SAGNKYSRLVNSQQARS-KFIAHVVNFILEHN 1256
+ +VT+LK+K +KV L++GG +D NKY L+ ++ R FI + +
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 1257 FDGLDLDWEYPK------------CWQVDCK---------QGPASDKQGFADLIKELRAA 1295
FDGLDL +++PK W+ K A K+ F L+++++ +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 1296 FNPHDLLLSAAVSPSKAVIDNA--YDIPVMSENLDWISVMTYDY--HGQWDKKTGHVAPM 1351
LLS V P+ +++ +DIP ++ +D++++ T+D+ + ++ + AP+
Sbjct: 184 LRADGFLLSLTVLPN---VNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 1352 YAL--PNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLA-DKNKNGLN--SQT 1406
Y D NA++ + YW+S G K+ G+ YG ++ L D G+ +T
Sbjct: 241 YHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPET 300
Query: 1407 YGGAEAGENTRARGFLAYYEICDKI----------QKDGWVVVRDRKRRIGPYAFK---- 1452
G A G ++ G L+Y EIC K+ + V D +R G A++
Sbjct: 301 SGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDG 360
Query: 1453 ---GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
WV +DD +KA + + +LGG ++ L DDF
Sbjct: 361 QITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDF 401
Score = 119 bits (297), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/297 (30%), Positives = 151/297 (50%), Gaps = 42/297 (14%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDL--CTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+VCY+ + ++ R G GK + D+ L C+H+VYG+A L ENL + + D
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 810 YERVVTLKKK--GVKVSLAIGGWND---SLGGKYSRLVNSATARQ-RFIEHVVKFLLKYQ 863
+ V +LK+K +KV L++GG +D KY L+ RQ FI + + Y
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 864 FDGLDLDWEYPTC--WQVNCDAG-----------------PDS--DKESFGLFVRELHQA 902
FDGLDL +++P +V+ D G P + KE F VR++ +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 903 FKPHGLLLSAAVSPSKQVINAA--YDVKALSESLDWISVMTYDY--HGQWDKKTGHVAPL 958
+ G LLS V P+ +N+ +D+ AL+ +D++++ T+D+ + ++ + AP+
Sbjct: 184 LRADGFLLSLTVLPN---VNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 959 YEHPD---DDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAA 1012
Y HPD D + NA+F + YW+ +G PS K+ +G+ YG A+ L + D GL
Sbjct: 241 Y-HPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKL--TKDSGLEGV 294
Score = 113 bits (282), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 105/423 (24%), Positives = 174/423 (41%), Gaps = 75/423 (17%)
Query: 126 VVCYVEAKSAYRHRPATFNVKN--VIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+VCY ++ S R + + Q C+H++Y YA + + + D+ K
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 184 YKSFLGLKEANPELKVYLAVKSN----------FVSITSDRESR-LNFISSVLEMFDMYK 232
+ LK P LKV L+V + ++ + + R + FI S E+ Y
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 233 FDGLDLNVKDPA-----LNXXXXXXLESI--------------ANERSDFSTFIQELSST 273
FDGLDL + P ++ +SI A + F+ ++++ +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 274 LRRNNYQLTLTS-PGVIDRKTSLVDISVVAPLVDLILLKSFN------NDHMDDEVVPVK 326
LR + + L+LT P V T DI + LVD + L +F+ N D P+
Sbjct: 184 LRADGFLLSLTVLPNV--NSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIY 241
Query: 327 PNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGAT 386
++ A+F V W+ +G +I +G+ +G +++L S GL
Sbjct: 242 HPDGSKDRLAHLNADFQ-----VEYWLSQGFPSNKINLGVATYGNAWKLTKDS--GLEGV 294
Query: 387 -----VKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPF------------- 428
GP EG +Q PG L++ E+C K + F N P
Sbjct: 295 PVVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQ-NQFLKGNESPLRRVSDPTKRFGGI 353
Query: 429 -------MVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC-GQKYPLL 480
+ + W++Y++ DS K Y + ++LGG L+ L DDFRG C G KYP+L
Sbjct: 354 AYRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPIL 413
Query: 481 SAV 483
A+
Sbjct: 414 RAI 416
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 127 bits (318), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 106/370 (28%), Positives = 170/370 (45%), Gaps = 58/370 (15%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1189
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1190 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1244
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1245 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1296
+ + + FDG+D+DWEYP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWEYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1297 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1356
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1357 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1413
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1414 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 1473
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 1474 YNDLGGAMIW 1483
N +GG M W
Sbjct: 334 KNGMGGGMWW 343
Score = 116 bits (290), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 143/295 (48%), Gaps = 46/295 (15%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
F+ V YF NWA Y G+G + P+D++ D THI+Y FA + + + D+WAD D +
Sbjct: 3 FRSVVYFVNWAIY--GRG-HNPQDLKADQFTHILYAFANIRPSGEVYLS-DTWADTDKHY 58
Query: 810 ---------------YERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK + +K L+IGGW S + ++ R++F
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFA 116
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPH 906
+ +K + FDG+D+DWEYP + F L ++ +A P+
Sbjct: 117 DTSLKLMKDLGFDGIDIDWEYPE---------DEKQANDFVLLLKACREALDAYSAKHPN 167
Query: 907 G--LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEH 961
G LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P
Sbjct: 168 GKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTK 226
Query: 962 PDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGA 1016
P+ F+++ + ++K G P+ K+V+GMP+YG+AF+ + N G+
Sbjct: 227 PEST--PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGS 279
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 129/342 (37%), Gaps = 61/342 (17%)
Query: 154 THVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLGLKEANPELKV 199
TH++YA+A I P + + D + + G K LK+ N LK
Sbjct: 30 THILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLKT 89
Query: 200 YLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLE 254
L++ NF + S E R F + L++ FDG+D++ + P E
Sbjct: 90 LLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEYP--------EDE 141
Query: 255 SIANERSDFSTFIQELSSTL--------RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVD 306
AN DF ++ L + LT+ SP L ++ + +D
Sbjct: 142 KQAN---DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL-KLAEMDKYLD 197
Query: 307 LILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGI 366
L +++ D+V N V T + + + AV ++IK G +I++G+
Sbjct: 198 FWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 367 PFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWRHF 420
P +G+++ S G+G + G G Y MP A + +D +
Sbjct: 256 PLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAASYS 308
Query: 421 TDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 462
D N K I+Y+ +K YI +GG M W
Sbjct: 309 YDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 170/370 (45%), Gaps = 58/370 (15%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1189
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1190 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1244
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1245 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1296
+ + + FDG+D+DW+YP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDIDWQYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1297 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1356
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1357 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1413
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1414 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 1473
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 1474 YNDLGGAMIW 1483
N +GG M W
Sbjct: 334 KNGMGGGMWW 343
Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 46/295 (15%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
F+ V YF NWA Y G+G + P+D++ D THI+Y FA + + + D+WAD D +
Sbjct: 3 FRSVVYFVNWAIY--GRG-HNPQDLKADQFTHILYAFANIRPSGEVYLS-DTWADTDKHY 58
Query: 810 ---------------YERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK + +K L+IGGW S + ++ R++F
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFA 116
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPH 906
+ +K + FDG+D+DW+YP + F L ++ +A P+
Sbjct: 117 DTSLKLMKDLGFDGIDIDWQYPE---------DEKQANDFVLLLKACREALDAYSAKHPN 167
Query: 907 G--LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEH 961
G LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P
Sbjct: 168 GKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTK 226
Query: 962 PDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGA 1016
P+ F+++ + ++K G P+ K+V+GMP+YG+AF+ + N G+
Sbjct: 227 PEST--PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGS 279
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/342 (22%), Positives = 129/342 (37%), Gaps = 61/342 (17%)
Query: 154 THVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLGLKEANPELKV 199
TH++YA+A I P + + D + + G K LK+ N LK
Sbjct: 30 THILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLKT 89
Query: 200 YLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLE 254
L++ NF + S E R F + L++ FDG+D++ + P E
Sbjct: 90 LLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQYP--------EDE 141
Query: 255 SIANERSDFSTFIQELSSTL--------RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVD 306
AN DF ++ L + LT+ SP L ++ + +D
Sbjct: 142 KQAN---DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL-KLAEMDKYLD 197
Query: 307 LILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGI 366
L +++ D+V N V T + + + AV ++IK G +I++G+
Sbjct: 198 FWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 367 PFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWRHF 420
P +G+++ S G+G + G G Y MP A + +D +
Sbjct: 256 PLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAASYS 308
Query: 421 TDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 462
D N K I+Y+ +K YI +GG M W
Sbjct: 309 YDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 170/370 (45%), Gaps = 58/370 (15%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-------------DTDQLVI 1189
F+ V YF NWA Y G + P D+ +D TH++Y FA + DTD+
Sbjct: 3 FRSVVYFVNWAIY---GRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHY- 58
Query: 1190 KPHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKF 1244
P D W + N Y +++ LKK + +K L+IGGW S + ++++ R KF
Sbjct: 59 -PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKF 115
Query: 1245 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF-------- 1296
+ + + FDG+D++WEYP+ D KQ A+D F L+K R A
Sbjct: 116 ADTSLKLMKDLGFDGIDINWEYPE----DEKQ--AND---FVLLLKACREALDAYSAKHP 166
Query: 1297 NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN 1356
N LL+ A SP+ N + M + LD+ ++M YD+ G WDK +GH++ ++ P+
Sbjct: 167 NGKKFLLTIA-SPAGPQNYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVF--PS 223
Query: 1357 DTTPT---FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1413
T P F+++ ++ ++ G K++ GMP+YG++F D N G E G
Sbjct: 224 TTKPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGSWENG 283
Query: 1414 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 1473
++ D Q+ V + Y + +D + KAE++
Sbjct: 284 ----------VWDYKDMPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYIT 333
Query: 1474 YNDLGGAMIW 1483
N +GG M W
Sbjct: 334 KNGMGGGMWW 343
Score = 114 bits (285), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 46/295 (15%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
F+ V YF NWA Y G+G + P+D++ D THI+Y FA + + + D+WAD D +
Sbjct: 3 FRSVVYFVNWAIY--GRG-HNPQDLKADQFTHILYAFANIRPSGEVYLS-DTWADTDKHY 58
Query: 810 ---------------YERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK + +K L+IGGW S + ++ R++F
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFA 116
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPH 906
+ +K + FDG+D++WEYP + F L ++ +A P+
Sbjct: 117 DTSLKLMKDLGFDGIDINWEYPE---------DEKQANDFVLLLKACREALDAYSAKHPN 167
Query: 907 G--LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVA---PLYEH 961
G LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ P
Sbjct: 168 GKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTK 226
Query: 962 PDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGA 1016
P+ F+++ + ++K G P+ K+V+GMP+YG+AF+ + N G+
Sbjct: 227 PEST--PFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDGIGTSFNGVGGGS 279
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 78/342 (22%), Positives = 129/342 (37%), Gaps = 61/342 (17%)
Query: 154 THVIYAYAAIDPVSRALIPE--------------DLEYDVIKGGYKSFLGLKEANPELKV 199
TH++YA+A I P + + D + + G K LK+ N LK
Sbjct: 30 THILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQMYLLKKNNRNLKT 89
Query: 200 YLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLE 254
L++ NF + S E R F + L++ FDG+D+N + P E
Sbjct: 90 LLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEYP--------EDE 141
Query: 255 SIANERSDFSTFIQELSSTL--------RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVD 306
AN DF ++ L + LT+ SP L ++ + +D
Sbjct: 142 KQAN---DFVLLLKACREALDAYSAKHPNGKKFLLTIASPAGPQNYNKL-KLAEMDKYLD 197
Query: 307 LILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGI 366
L +++ D+V N V T + + + AV ++IK G +I++G+
Sbjct: 198 FWNLMAYDFSGSWDKVSGHMSN--VFPSTTKPESTPFSSDKAVKDYIKAGVPANKIVLGM 255
Query: 367 PFFGKSYRLFNRSEYGLGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWRHF 420
P +G+++ S G+G + G G Y MP A + +D +
Sbjct: 256 PLYGRAF----ASTDGIGTSFNGVGGGSWENGVWDYKDMPQQGA---QVTELEDIAASYS 308
Query: 421 TDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLW 462
D N K I+Y+ +K YI +GG M W
Sbjct: 309 YDKN-------KRYLISYDTVKIAGKKAEYITKNGMGGGMWW 343
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With A
Potent Inhibitor Caffeine
Length = 406
Score = 121 bits (304), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 96/371 (25%), Positives = 158/371 (42%), Gaps = 56/371 (15%)
Query: 1146 VCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV--------IKPH---DT 1194
YFTNW Y G + P+D+ + HV+Y F L D V ++ H D+
Sbjct: 24 AVYFTNWGIY---GRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDS 80
Query: 1195 WADLDNKFYEKVTALKK-----KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVV 1249
W D+ Y V L K + +K+ L+IGGW S + +++ R+ F V
Sbjct: 81 WNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWS--TNFPAAASTEATRATFAKTAV 138
Query: 1250 NFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD--------- 1300
F+ + FDG+D+DWEYP +D L++ +R + +
Sbjct: 139 EFMKDWGFDGIDVDWEYPAS---------ETDANNMVLLLQRVRQELDSYSATYANGYHF 189
Query: 1301 -LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMY-ALPNDT 1358
L ++A PS N + + LD I++M YDY G WD +GH +Y + N +
Sbjct: 190 QLSIAAPAGPSHY---NVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPS 246
Query: 1359 TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRA 1418
+ F+ ++ +++ G K+I GMP+YG++F D ++ G E+G
Sbjct: 247 STPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTDGPGKPYSTIGEGSWESG----- 301
Query: 1419 RGFLAYYEICDKIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDL 1477
+ Y++ + K G V+ D Y + +D M+ K + K L
Sbjct: 302 ---IWDYKV---LPKAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGL 355
Query: 1478 GGAMIWALDLD 1488
GG+M W D
Sbjct: 356 GGSMFWEASAD 366
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 127/274 (46%), Gaps = 44/274 (16%)
Query: 753 VCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLI--------IKAH---DS 801
YFTNW Y G+ + P D++ H++Y F L + + ++ H DS
Sbjct: 24 AVYFTNWGIY--GR-NFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDS 80
Query: 802 WADFDNRFY---ERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVV 856
W D Y +++ LKK + +K+ L+IGGW S + ++ R F + V
Sbjct: 81 WNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWST--NFPAAASTEATRATFAKTAV 138
Query: 857 KFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG--------- 907
+F+ + FDG+D+DWEYP ++D + L ++ + Q +
Sbjct: 139 EFMKDWGFDGIDVDWEYPAS---------ETDANNMVLLLQRVRQELDSYSATYANGYHF 189
Query: 908 -LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD-D 965
L ++A PS + + L LD I++M YDY G WD +GH LY +
Sbjct: 190 QLSIAAPAGPSHYNV---LKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPS 246
Query: 966 FFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
F+ ++ ++ G P+ K+++GMP+YG+AF
Sbjct: 247 STPFSTKAAVDAYIAAGVPASKIILGMPIYGRAF 280
Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 31/297 (10%)
Query: 182 GGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGL 236
G K LK+AN LK+ L++ +NF + S +R F + +E + FDG+
Sbjct: 90 GCVKQLYKLKKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGI 149
Query: 237 DLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNY--QLTLTSPGVIDRKTS 294
D++ + PA + + R + ++ S N Y QL++ +P +
Sbjct: 150 DVDWEYPASETDANNMVLLLQRVRQELDSY-----SATYANGYHFQLSIAAPAGPSHY-N 203
Query: 295 LVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIK 354
++ ++ + ++D I L +++ D V + N + S+ + ++AV +I
Sbjct: 204 VLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPF--STKAAVDAYIA 261
Query: 355 KGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPG----TEGKYTQMPGYLAFFEVCN 410
G +II+G+P +G+++ GPG T G+ + G + ++V
Sbjct: 262 AGVPASKIILGMPIYGRAF-----------VGTDGPGKPYSTIGEGSWESG-IWDYKVLP 309
Query: 411 KFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
K + I+Y+ D +R K++Y K LGG+M W D
Sbjct: 310 KAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 119 bits (299), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 133/277 (48%), Gaps = 41/277 (14%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
++ V YF NWA Y G+ + P+D+ + TH++Y FA + E + DSWAD + +
Sbjct: 5 YRSVVYFVNWAIY--GR-NHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 61
Query: 810 ---------------YERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK + +KV L+IGGW S ++ ++ R+ F
Sbjct: 62 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSP--NFAPAASTDAGRKNFA 119
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG----- 907
+ VK L FDGLD+DWEYP D F L +RE+ A +
Sbjct: 120 KTAVKLLQDLGFDGLDIDWEYPEN---------DQQANDFVLLLREVRTALDSYSAANAG 170
Query: 908 ---LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 964
LL+ A SP+ +K + + LD+ ++M YDY G + +GH A +Y +
Sbjct: 171 GQHFLLTVA-SPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN 229
Query: 965 DFFY-FNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
FN ++ + G P+ K+V+GMP+YG++F+
Sbjct: 230 PLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFA 266
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 105/377 (27%), Positives = 175/377 (46%), Gaps = 71/377 (18%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL--DTDQLVIK---------- 1190
++ V YF NWA Y G + P D+ + THV+Y FA + +T ++ +
Sbjct: 5 YRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 61
Query: 1191 PHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFI 1245
P D+W+D N Y +++ LKK + +KV L+IGGW S ++ ++ R F
Sbjct: 62 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSP--NFAPAASTDAGRKNFA 119
Query: 1246 AHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG--FADLIKELRAAFNPHD--- 1300
V + + FDGLD+DWEYP+ +D+Q F L++E+R A + +
Sbjct: 120 KTAVKLLQDLGFDGLDIDWEYPE-----------NDQQANDFVLLLREVRTALDSYSAAN 168
Query: 1301 -------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1353
L +++ P K + + D M + LD+ ++M YDY G + +GH A +Y
Sbjct: 169 AGGQHFLLTVASPAGPDKIKVLHLKD---MDQQLDFWNLMAYDYAGSFSSLSGHQANVY- 224
Query: 1354 LPNDT-----TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYG 1408
NDT TP FN +L + + G K++ GMP+YG+SF D + Y
Sbjct: 225 --NDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDG-----PGKPYN 276
Query: 1409 GAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQ--WVGFDDQAMIH 1466
G G+ + G Y + + V+ D + Y++ + +D+ + +
Sbjct: 277 G--VGQGSWENGVWDYKALPQAGATEH--VLPD---IMASYSYDATNKFLISYDNPQVAN 329
Query: 1467 HKAEFVKYNDLGGAMIW 1483
K+ ++K LGGAM W
Sbjct: 330 LKSGYIKSLGLGGAMWW 346
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/368 (22%), Positives = 143/368 (38%), Gaps = 60/368 (16%)
Query: 126 VVCYVE-AKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIK--- 181
VV +V A H P V+ + THV+YA+A + P + + D D+ K
Sbjct: 8 VVYFVNWAIYGRNHNPQDLPVERL-----THVLYAFANVRPETGEVYMTDSWADIEKHYP 62
Query: 182 ------------GGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSV 224
G K LK+ N LKV L++ NF S R NF +
Sbjct: 63 GDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTA 122
Query: 225 LEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR-------- 276
+++ FDGLD++ + P + + +DF ++E+ + L
Sbjct: 123 VKLLQDLGFDGLDIDWEYPEND-----------QQANDFVLLLREVRTALDSYSAANAGG 171
Query: 277 NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVT 336
++ LT+ SP D K ++ + + +D L ++ D+ V +
Sbjct: 172 QHFLLTVASPAGPD-KIKVLHLKDMDQQLDFWNLMAY--DYAGSFSSLSGHQANVYNDTS 228
Query: 337 STIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEG-- 394
+ ++ N ++A+ + G +I++G+P +G+S+ + +G G
Sbjct: 229 NPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPYNGVGQGSWENGVW 288
Query: 395 KYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDR 454
Y +P A V D + D+ + F+ I+Y+N K YIK
Sbjct: 289 DYKALPQAGATEHV---LPDIMASYSYDATNK-FL------ISYDNPQVANLKSGYIKSL 338
Query: 455 HLGGAMLW 462
LGGAM W
Sbjct: 339 GLGGAMWW 346
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product Cyclopentapeptide
Inhibitor Argadin Against Aspergillus Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product Cyclopentapeptide
Inhibitor Argadin Against Aspergillus Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 106/377 (28%), Positives = 175/377 (46%), Gaps = 71/377 (18%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL--DTDQLVIK---------- 1190
++ V YF NWA Y G + P D+ + THV+Y FA + +T ++ +
Sbjct: 43 YRSVVYFVNWAIY---GRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 99
Query: 1191 PHDTWADLDNKFY---EKVTALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFI 1245
P D+W+D N Y +++ LKK + +KV L+IGGW S ++ ++ R F
Sbjct: 100 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSP--NFAPAASTDAGRKNFA 157
Query: 1246 AHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG--FADLIKELRAAFNPHD--- 1300
V + + FDGLD+DWEYP+ +D+Q F L+KE+R A + +
Sbjct: 158 KTAVKLLQDLGFDGLDIDWEYPE-----------NDQQANDFVLLLKEVRTALDSYSAAN 206
Query: 1301 -------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1353
L +++ P K + + D M + LD+ ++M YDY G + +GH A +Y
Sbjct: 207 AGGQHFLLTVASPAGPDKIKVLHLKD---MDQQLDFWNLMAYDYAGSFSSLSGHQANVY- 262
Query: 1354 LPNDT-----TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYG 1408
NDT TP FN +L + + G K++ GMP+YG+SF D + Y
Sbjct: 263 --NDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDG-----PGKPYN 314
Query: 1409 GAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQ--WVGFDDQAMIH 1466
G G+ + G Y + + V+ D + Y++ + +D+ + +
Sbjct: 315 G--VGQGSWENGVWDYKALPQAGATEH--VLPD---IMASYSYDATNKFLISYDNPQVAN 367
Query: 1467 HKAEFVKYNDLGGAMIW 1483
K+ ++K LGGAM W
Sbjct: 368 LKSGYIKSLGLGGAMWW 384
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 133/277 (48%), Gaps = 41/277 (14%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
++ V YF NWA Y G+ + P+D+ + TH++Y FA + E + DSWAD + +
Sbjct: 43 YRSVVYFVNWAIY--GR-NHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHY 99
Query: 810 ---------------YERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK + +KV L+IGGW S ++ ++ R+ F
Sbjct: 100 PGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYS--PNFAPAASTDAGRKNFA 157
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG----- 907
+ VK L FDGLD+DWEYP D F L ++E+ A +
Sbjct: 158 KTAVKLLQDLGFDGLDIDWEYPEN---------DQQANDFVLLLKEVRTALDSYSAANAG 208
Query: 908 ---LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 964
LL+ A SP+ +K + + LD+ ++M YDY G + +GH A +Y +
Sbjct: 209 GQHFLLTVA-SPAGPDKIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN 267
Query: 965 DFFY-FNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
FN ++ + G P+ K+V+GMP+YG++F+
Sbjct: 268 PLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFA 304
Score = 53.9 bits (128), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 82/374 (21%), Positives = 147/374 (39%), Gaps = 65/374 (17%)
Query: 130 VEAKSAYRHRPATFNV------KNVIPQ-----ICTHVIYAYAAIDPVSRALIPEDLEYD 178
+EA+++ +R + V +N PQ THV+YA+A + P + + D D
Sbjct: 35 LEARASSGYRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 179 VIK---------------GGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRL 218
+ K G K LK+ N LKV L++ NF S R
Sbjct: 95 IEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRK 154
Query: 219 NFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR-- 276
NF + +++ FDGLD++ + P + + +DF ++E+ + L
Sbjct: 155 NFAKTAVKLLQDLGFDGLDIDWEYPEND-----------QQANDFVLLLKEVRTALDSYS 203
Query: 277 ------NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTK 330
++ LT+ SP D K ++ + + +D L ++ D+
Sbjct: 204 AANAGGQHFLLTVASPAGPD-KIKVLHLKDMDQQLDFWNLMAY--DYAGSFSSLSGHQAN 260
Query: 331 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGP 390
V ++ ++ N ++A+ + G +I++G+P +G+S+ + +G
Sbjct: 261 VYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTDGPGKPYNGVGQGS 320
Query: 391 GTEG--KYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKM 448
G Y +P A V D + D+ + F+ I+Y+N K
Sbjct: 321 WENGVWDYKALPQAGATEHV---LPDIMASYSYDATNK-FL------ISYDNPQVANLKS 370
Query: 449 NYIKDRHLGGAMLW 462
YIK LGGAM W
Sbjct: 371 GYIKSLGLGGAMWW 384
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/375 (25%), Positives = 157/375 (41%), Gaps = 51/375 (13%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYE 1204
+ C+ N + G SD D G+A D+ V DTW +
Sbjct: 54 LTCFMAN----KAQGTGPNGSDGAGDAWADFGMGYAA---DKSVSGKADTWDQPLAGSFN 106
Query: 1205 KVTALKKKG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN------ 1256
++ LK K +KV +++GGW S +S+ ++ +R K ++ ++ ++ N
Sbjct: 107 QLKQLKAKNPKLKVMISLGGWTWS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEG 164
Query: 1257 ----------FDGLDLDWEYPKCWQVDCKQG--PASDKQGFADLIKELR------AAFNP 1298
FDG+D+DWE+P G +D+ F L+ E R + N
Sbjct: 165 RGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNN 224
Query: 1299 HDLLLSAAVSPSKAVID-NAYDIPVMSENLDWISVMTYDYHGQWDKK-TGHVAPMYALPN 1356
+LSA + + A ID +D P ++LD+ S+ YD HG W+ TGH A +Y P
Sbjct: 225 KKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPA 284
Query: 1357 DT---TPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1413
D + F+A+ ++ +++ G D K++ G+ YG+ +T A N +G A G
Sbjct: 285 DPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK------NVSPWGPATDG 338
Query: 1414 ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVK 1473
Y+ + D + R + G QW +D+ A K +++
Sbjct: 339 APGTYETANEDYDKLKTLGTDHYDAATGSAWR-----YDGTQWWSYDNIATTKQKTDYIV 393
Query: 1474 YNDLGGAMIWALDLD 1488
LGG M W L D
Sbjct: 394 SKGLGGGMWWELSGD 408
Score = 80.9 bits (198), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 78/320 (24%), Positives = 134/320 (41%), Gaps = 69/320 (21%)
Query: 750 FKIVCYFTNWAWY-RPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLII------------ 796
++ V YF W Y R + K + THI Y F ++++ L
Sbjct: 9 YRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPN 68
Query: 797 ---KAHDSWADFDNRF--------------------YERVVTLKKKG--VKVSLAIGGWN 831
A D+WADF + + ++ LK K +KV +++GGW
Sbjct: 69 GSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWT 128
Query: 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ----------------FDGLDLDWEYPT 875
S +S+ + +RQ+ + + +K FDG+D+DWE+P
Sbjct: 129 WSK--NFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPG 186
Query: 876 CWQVNCDAGPDS--DKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVINA-AYD 926
G D+ D+ +F + E + +G +LSA + + I+A +D
Sbjct: 187 TNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADIDAGGWD 246
Query: 927 VKALSESLDWISVMTYDYHGQWDKK-TGHVAPLYEHPDDDFF---YFNANFTMNYWMKKG 982
A +SLD+ S+ YD HG W+ TGH A LY+ P D F+A+ + ++ G
Sbjct: 247 DPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAG 306
Query: 983 APSRKLVMGMPMYGQAFSLA 1002
++L +G+ YG+ ++ A
Sbjct: 307 IDPKQLGLGLAAYGRGWTGA 326
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 74/331 (22%), Positives = 125/331 (37%), Gaps = 66/331 (19%)
Query: 180 IKGGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMF------ 228
+ G + LK NP+LKV +++ NF + SR +SS ++++
Sbjct: 101 LAGSFNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLP 160
Query: 229 ----------DMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTL---- 274
FDG+D++ + P N N+R++F + E L
Sbjct: 161 NFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYG 220
Query: 275 RRNNYQLTLTS-----PGVIDRKT-------SLVDISVVAPLVDL-----ILLKSFNNDH 317
NN + L++ P ID +D + DL L +
Sbjct: 221 STNNKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGY-DLHGAWNPTLTGHQANL 279
Query: 318 MDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYR-LF 376
DD P P+ K + + AV ++ G P+Q+ +G+ +G+ +
Sbjct: 280 YDDPADPRAPSKKFSA------------DKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK 327
Query: 377 NRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWI 436
N S +G AT PGT Y E +K K H+ + G + +W
Sbjct: 328 NVSPWGP-ATDGAPGT---------YETANEDYDKLKTLGTDHYDAATGSAWRYDGTQWW 377
Query: 437 TYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
+Y+N + ++K +YI + LGG M W L D
Sbjct: 378 SYDNIATTKQKTDYIVSKGLGGGMWWELSGD 408
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant W167a
In Complex With Allosamidin
Length = 563
Score = 96.7 bits (239), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 232 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 285
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 286 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 345
Query: 1296 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 346 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 403
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 404 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 458
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 459 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 515
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 516 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 221 REDFKISIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 277
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 278 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 334
Query: 892 FGLFVRELH------QAFKPHGLLLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL A L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 335 YVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 392
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 393 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 449
Query: 1001 LANS 1004
N
Sbjct: 450 GVNG 453
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 232 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 288
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 289 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 348
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 349 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 406
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 407 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 454
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 455 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 511
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 512 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 545
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At 1.55
Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With Allosamidin
Length = 540
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 148/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitobio-Thiazoline Thioamide
Length = 548
Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELH------QAFKPHGLLLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL A L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLTQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LTQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex With
Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSAETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELH------QAFKPHGLLLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL A L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSAETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLTQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 144/334 (43%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSAETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LTQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3 Angstroms
Resolution
Length = 540
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNP------HDLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSTETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 128/305 (41%), Gaps = 63/305 (20%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGF-------AVLDS------------- 791
+ YF W Y + + I TH++YGF + DS
Sbjct: 137 VGSYFVEWGVYGR---NFTVDKIPAQNLTHLLYGFIPICGGNGINDSLKEIEGSFQALQR 193
Query: 792 -----ENLIIKAHD-------------SWADFDNRFYERVVTLKKK--GVKVSLAIGGWN 831
E+ I HD +W D + +++ LK+ +K+ +IGGW
Sbjct: 194 SCQGREDFKISIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWT 253
Query: 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKE 890
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E
Sbjct: 254 LS---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGE 310
Query: 891 SFGLFVRELHQAF------KPHGLLLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYD 943
++ L ++EL L++A+S K I+ AY+V S+D I +M+YD
Sbjct: 311 TYVLLMKELRAMLDQLSTETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYD 368
Query: 944 YHGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
++G +D K GH L PD + N +N + +G K+V+G MYG+ +
Sbjct: 369 FYGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGW 425
Query: 1000 SLANS 1004
+ N
Sbjct: 426 TGVNG 430
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 143/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS+ R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSTETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed With
Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DW++P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DW++P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed With
Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 95.1 bits (235), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 148/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M++D++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSFDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 113/244 (46%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M++D+
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSFDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L SF N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D+DWEYP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDID 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 94.4 bits (233), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D+DWEYP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 94.4 bits (233), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 76 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 135
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D+DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 136 DGVDIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 185
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 186 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 245
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 246 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 300
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 301 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 360
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 361 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 408
Score = 86.7 bits (213), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 43 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 101
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D+DWEYP +V +
Sbjct: 102 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYPQAAEV----------D 151
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 152 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 211
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 212 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 271
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 272 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 320
Score = 65.1 bits (157), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 30 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 81
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 82 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 141
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 142 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 189
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 190 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 241
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 242 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 301
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 302 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 360
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 361 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 411
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed With
Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+ WE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+ WE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 141/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D+ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 93.6 bits (231), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DWE+P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M+Y ++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYAFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DWE+P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M+Y +
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYAF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLNVKDPAL-----NXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ + P N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ +F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex With
Hexasaccharide
Length = 540
Score = 93.6 bits (231), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 147/330 (44%), Gaps = 35/330 (10%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVN 1236
FA L Q K W D + ++ ALK+ +K+ +IGGW S +
Sbjct: 209 FAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMG 262
Query: 1237 SQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA 1295
+ R +F+ V F+ F DG+D+DW +P + G D + + L+KELRA
Sbjct: 263 DKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAM 322
Query: 1296 FNPHDL------LLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQWD-KKTGH 1347
+ + L++A+S K ID AY+ V ++D I +M+YD++G +D K GH
Sbjct: 323 LDQLSVETGRKYELTSAISAGKDKIDKVAYN--VAQNSMDHIFLMSYDFYGAFDLKNLGH 380
Query: 1348 VAPMYA---LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
+ A P+ T N +L ++ G K++ G MYG+ +T + +N +
Sbjct: 381 QTALNAPAWKPDTAYTTVNGVNAL---LAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI-- 435
Query: 1405 QTYGGAEAG--ENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK---GDQWVGF 1459
+ G G + T G + Y +I + W D PY FK GD + F
Sbjct: 436 -PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAE-APYVFKPSTGD-LITF 492
Query: 1460 DDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
DD + K ++V LGG W +D D+
Sbjct: 493 DDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 112/244 (45%), Gaps = 25/244 (10%)
Query: 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWND 832
R D I FA L K +W D + +++ LK+ +K+ +IGGW
Sbjct: 198 REDFKVSIHDPFAALQKAQ---KGVTAWDDPYKGNFGQLMALKQAHPDLKILPSIGGWTL 254
Query: 833 SLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKES 891
S + R RF+ V +FL ++F DG+D+DW +P N + G D E+
Sbjct: 255 S---DPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGET 311
Query: 892 FGLFVRELHQAFKPHGL------LLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDY 944
+ L ++EL + L++A+S K I+ AY+V S+D I +M+YD+
Sbjct: 312 YVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDKVAYNVA--QNSMDHIFLMSYDF 369
Query: 945 HGQWD-KKTGHVAPLYE---HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000
+G +D K GH L PD + N +N + +G K+V+G MYG+ ++
Sbjct: 370 YGAFDLKNLGHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWT 426
Query: 1001 LANS 1004
N
Sbjct: 427 GVNG 430
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 142/334 (42%), Gaps = 45/334 (13%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVS----ITSDRE 215
+AA+ + + D Y KG + + LK+A+P+LK+ ++ +S D+
Sbjct: 209 FAALQKAQKGVTAWDDPY---KGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFMGDKV 265
Query: 216 SRLNFISSVLEMFDMYKF-DGLDLN-----VKDPALNXXXXXXLESIANERSDFSTFIQE 269
R F+ SV E +KF DG+D++ K N E+ + + +
Sbjct: 266 KRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQ 325
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF---------NNDHMDD 320
LS R Y+LT D K V +V +D I L S+ N H
Sbjct: 326 LSVETGRK-YELTSAISAGKD-KIDKVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTA 383
Query: 321 EVVPV-KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFN-- 377
P KP+T +T+ N + + +G +P +I++G +G+ + N
Sbjct: 384 LNAPAWKPDT-----AYTTVNGVNAL-------LAQGVKPGKIVVGTAMYGRGWTGVNGY 431
Query: 378 RSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMVK--KDE 434
++ T GP K T G + + ++ ++F W++ D+ E P++ K +
Sbjct: 432 QNNIPFTGTATGPV---KGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGD 488
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT+++ S++ K Y+ D+ LGG W +D D+
Sbjct: 489 LITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 93.2 bits (230), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D+DW+YP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDIDWQYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D+DW+YP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 88/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDID 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WQYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In Complex
With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In Complex
With Inhibitor Allosamidin
Length = 499
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D++WEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDINWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D++WEYP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D+N
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIN 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+++DWEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVNIDWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+++DWEYP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 63.2 bits (152), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 87/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG++++
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNID 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 84/349 (24%), Positives = 146/349 (41%), Gaps = 80/349 (22%)
Query: 1205 KVTALKKK--GVKVTLAIGGW--NDSAGNKYSRLVNSQQ---ARSKFIAHVVNFILEHNF 1257
++TALK +++ +IGGW ++ G ++ VN+ + +R+KF V + ++ F
Sbjct: 77 RLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGF 136
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
DG+D++WEYP+ +VD GF ++E+R N + P + I A
Sbjct: 137 DGVDINWEYPQAAEVD----------GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGA 186
Query: 1318 YDIPVMSE----------NLDWISVMTYDYHGQWDKKTGHVAPMY--------------- 1352
+S LD+I++MTYD G W+K T H A ++
Sbjct: 187 GGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREA 246
Query: 1353 -----------ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG 1401
A P+ + T +A H + G K++ G+P YG++F K +G
Sbjct: 247 NLGWSWEELTRAFPSPFSLTVDAAVQQHL-MMEGVPSAKIVMGVPFYGRAF----KGVSG 301
Query: 1402 LNSQTYG------------------GAEAGENTRARGFLAYYEICDKIQKD-GWVVVRDR 1442
N Y G E + +Y ++ +Q + G+ + +
Sbjct: 302 GNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 1443 KRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 362 KTKT-PYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
Score = 85.1 bits (209), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 76/289 (26%), Positives = 122/289 (42%), Gaps = 54/289 (18%)
Query: 779 CTHIVYGFAVLDSENLIIKAHDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGW--NDS 833
THI + F ++S NL + D R R+ LK +++ +IGGW ++
Sbjct: 44 LTHINFSFLDINS-NLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSND 102
Query: 834 LGGKYSRLVNSA---TARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
LG ++ VN+ +R +F + V+ + Y FDG+D++WEYP +V +
Sbjct: 103 LGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYPQAAEV----------D 152
Query: 891 SFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSE----------SLDWISVM 940
F ++E+ + P + I A LS LD+I++M
Sbjct: 153 GFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLM 212
Query: 941 TYDYHGQWDKKTGHVAPLYEHPDDDFFY------------------FNANFTM------- 975
TYD G W+K T H A L+ FY F + F++
Sbjct: 213 TYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQ 272
Query: 976 NYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLST 1024
+ M +G PS K+VMG+P YG+AF + + G ++ G P ST
Sbjct: 273 QHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPST 321
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 89/411 (21%), Positives = 151/411 (36%), Gaps = 111/411 (27%)
Query: 143 FNVKNVIP---QICTHVIYAYAAI--------DPVSRALIPEDLEYDVIKGGYKSFLGLK 191
F V N+ P + TH+ +++ I DP + D+ LK
Sbjct: 31 FPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDV--------VNRLTALK 82
Query: 192 EANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
NP L++ ++ +N+V+ SR F S + + Y FDG+D+N
Sbjct: 83 AHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIN 142
Query: 240 VKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNN---------YQLTLTSPG--- 287
+ P A E F +QE+ + L + YQLT+ G
Sbjct: 143 WEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAF 190
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIAN---FNN 344
+ R S + +VAPL D I L ++ D P + T + A +N
Sbjct: 191 FLSRYYSKL-AQIVAPL-DYINLMTY------DLAGPWEKVTNHQAALFGDAAGPTFYNA 242
Query: 345 IESAVYNW-------------------------IKKGARPEQIIIGIPFFGKSYRLFNRS 379
+ A W + +G +I++G+PF+G++++ +
Sbjct: 243 LREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGG 302
Query: 380 EYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-----------------WRHFTD 422
G ++ PG E Y +L E C + KD R + D
Sbjct: 303 NGGQYSSHSTPG-EDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWND 361
Query: 423 SNGEPFM--VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
P++ + ++TY++ +S + K YIK + LGG M W L D+ G
Sbjct: 362 KTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG 412
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 85/334 (25%), Positives = 136/334 (40%), Gaps = 74/334 (22%)
Query: 732 EPTTTHISVTEKS-PLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLD 790
+P T ++ KS D + YF W Y G+ Y +++ D THI+YGF +
Sbjct: 119 KPLTMNVDPNNKSYNTDPSIVMGTYFVEWGIY--GR-DYTVDNMPVDNLTHILYGFIPIC 175
Query: 791 SENLIIKA-----------------------HDSWADFDNRF--------------YERV 813
N +K+ HD WA + F Y +
Sbjct: 176 GPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAML 235
Query: 814 VTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLD 870
+ LK++ +K+ +IGGW +L + V+ R F+ V KFL ++F DG+D+D
Sbjct: 236 MALKQRNPDLKIIPSIGGW--TLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDID 292
Query: 871 WEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQVINA 923
WE+P D G P +D ++ +REL +A L++A+ I
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIED 352
Query: 924 AYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY------------------EHPDDD 965
D + +D+I MTYD++G W+ GH LY P
Sbjct: 353 V-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKG 411
Query: 966 FFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
Y A+ + + +G P+ KLV+G MYG+ +
Sbjct: 412 PAY-TADNGIQLLLAQGVPANKLVLGTAMYGRGW 444
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 160/424 (37%), Gaps = 91/424 (21%)
Query: 1147 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1183
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1184 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1227
+ + HD WA F Y + ALK++ +K+ +IGGW S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTLS- 257
Query: 1228 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1285
+ + V+ + R F+A V F+ F DG+D+DWE+P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAY 315
Query: 1286 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1339
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1340 QWDKKTGHVAPMYA----LPNDT-------------TPTFNANYSLHYWVSHGADRKKVI 1382
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1383 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1427
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1428 CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 1485
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 1486 DLDD 1489
D D+
Sbjct: 552 DADN 555
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 132/334 (39%), Gaps = 51/334 (15%)
Query: 180 IKGGYKSFLGLKEANPELKVYLAVKS--------NFVSITSDRESRLNFISSVLEMFDMY 231
IKG Y + LK+ NP+LK+ ++ +FV D+++R F++SV + +
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTW 283
Query: 232 KF-DGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLT 284
KF DG+D++ + P + + N+ + ++EL L Y+LT +
Sbjct: 284 KFYDGVDIDWEFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-S 341
Query: 285 SPGVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQ 334
+ GV K VD + +D I +++ N+ + ++P
Sbjct: 342 AIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGG 401
Query: 335 VTSTIANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLG 384
V + N I+ +G ++++G +G+ + L + ++ G
Sbjct: 402 VDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTG 461
Query: 385 AT---VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDE 434
+KG +G + G +F N + + D+ E V E
Sbjct: 462 TATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGE 521
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT++++ S+ K NY K L G W +D D+
Sbjct: 522 LITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 135/334 (40%), Gaps = 74/334 (22%)
Query: 732 EPTTTHISVTEKS-PLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLD 790
+P T ++ KS D + YF W Y G+ Y +++ D THI+YGF +
Sbjct: 119 KPLTMNVDPNNKSYNTDPSIVMGTYFVEWGIY--GR-DYTVDNMPVDNLTHILYGFIPIC 175
Query: 791 SENLIIKA-----------------------HDSWADFDNRF--------------YERV 813
N +K+ HD WA + F Y +
Sbjct: 176 GPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAML 235
Query: 814 VTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLD 870
+ LK++ +K+ +IGGW +L + V+ R F+ V KFL ++F DG+D+D
Sbjct: 236 MALKQRNPDLKIIPSIGGW--TLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDID 292
Query: 871 WEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQVINA 923
W +P D G P +D ++ +REL +A L++A+ I
Sbjct: 293 WMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIED 352
Query: 924 AYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY------------------EHPDDD 965
D + +D+I MTYD++G W+ GH LY P
Sbjct: 353 V-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKG 411
Query: 966 FFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
Y A+ + + +G P+ KLV+G MYG+ +
Sbjct: 412 PAY-TADNGIQLLLAQGVPANKLVLGTAMYGRGW 444
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 91/424 (21%)
Query: 1147 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1183
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1184 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1227
+ + HD WA F Y + ALK++ +K+ +IGGW S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGWTLS- 257
Query: 1228 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1285
+ + V+ + R F+A V F+ F DG+D+DW +P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWMFPGGGGAAADKGDPVNDGPAY 315
Query: 1286 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1339
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1340 QWDKKTGHVAPMYA----LPNDT-------------TPTFNANYSLHYWVSHGADRKKVI 1382
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1383 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1427
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1428 CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 1485
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 1486 DLDD 1489
D D+
Sbjct: 552 DADN 555
Score = 39.7 bits (91), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 69/334 (20%), Positives = 131/334 (39%), Gaps = 51/334 (15%)
Query: 180 IKGGYKSFLGLKEANPELKVYLAVKS--------NFVSITSDRESRLNFISSVLEMFDMY 231
IKG Y + LK+ NP+LK+ ++ +FV D+++R F++SV + +
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFV----DKKNRDTFVASVKKFLKTW 283
Query: 232 KF-DGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLT 284
KF DG+D++ P + + N+ + ++EL L Y+LT +
Sbjct: 284 KFYDGVDIDWMFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-S 341
Query: 285 SPGVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQ 334
+ GV K VD + +D I +++ N+ + ++P
Sbjct: 342 AIGVGYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGG 401
Query: 335 VTSTIANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLG 384
V + N I+ +G ++++G +G+ + L + ++ G
Sbjct: 402 VDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTG 461
Query: 385 AT---VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDE 434
+KG +G + G +F N + + D+ E V E
Sbjct: 462 TATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGE 521
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
IT++++ S+ K NY K L G W +D D+
Sbjct: 522 LITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 80.5 bits (197), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 163/436 (37%), Gaps = 96/436 (22%)
Query: 1141 DEFKIVCYFTNWAWY---------RQSGGKYLPSDI------DSDLCTHVIYGFAVLDTD 1185
D+F ++CYFT+W+ Y R +GG+ +DI D +IY F L D
Sbjct: 70 DDFNVLCYFTDWSQYDPRIINKEIRDTGGR--SADILRLNTPDGRPFKRLIYSFGGLIGD 127
Query: 1186 Q---------------LVIKPHDTWADLDNKFY-------------------------EK 1205
+ + P D A+ K E+
Sbjct: 128 KKYSADGNASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANER 187
Query: 1206 VTALKKKGV--------------KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNF 1251
K KG+ + +L+IGGW S +S + + R+ F+ + +F
Sbjct: 188 YNQEKAKGLLGGFRLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDF 245
Query: 1252 ILEH-NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310
F LD+DWEYP P D FA LI+++ A + +S A S
Sbjct: 246 FQRFPMFSHLDIDWEYPGSIGAGNPNSP-DDGANFAILIQQITDAKISNLKGISIASSAD 304
Query: 1311 KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHY 1370
A ID A +M + I++MTYD+ D K H +Y P+D + YS+
Sbjct: 305 PAKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVY----SKYSIDD 360
Query: 1371 WVSHGADRKKVIFGMPMYG-QSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYE--- 1426
V+H D KKV G +T KN S A G T A L +E
Sbjct: 361 AVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPSEEALKGTYTDANQTLGSFEYSV 420
Query: 1427 ------ICDKIQ------KDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVK 1473
IC + ++G+ +V D+ + Y+ ++ D + K +VK
Sbjct: 421 LEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVK 480
Query: 1474 YNDLGGAMIWALDLDD 1489
LGG IW+ D D+
Sbjct: 481 DKGLGGLFIWSGDQDN 496
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 812 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLD 870
R++ K ++ SL+IGGW S+ G +S + R F+E + F ++ F LD+D
Sbjct: 201 RLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDID 258
Query: 871 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDVK 928
WEYP PD D +F + ++++ A + G+ ++++ P+K I+AA
Sbjct: 259 WEYPGSIGAGNPNSPD-DGANFAILIQQITDAKISNLKGISIASSADPAK--IDAANIPA 315
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 964
+ + I++MTYD+ D K H +Y P D
Sbjct: 316 LMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSD 351
Score = 40.4 bits (93), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 53/322 (16%)
Query: 181 KGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMY-KFD 234
KG F L EA+ EL+ L++ F I D R NF+ + + F + F
Sbjct: 194 KGLLGGFRLLHEADKELEFSLSIGGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 253
Query: 235 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTS---PGVIDR 291
LD++ + P + ++ ++F+ IQ+++ N +++ S P ID
Sbjct: 254 HLDIDWEYPG---SIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDA 310
Query: 292 KT--SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESA 348
+L+D V ++L+ F + K + NI + S + + +I+ A
Sbjct: 311 ANIPALMDAGVTG--INLMTYDFFT-------LGDGKLSHHTNIYRDPSDVYSKYSIDDA 361
Query: 349 VYNWI-KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTE---GKYTQMPGYLA 404
V + I +K P+ I IG Y + R+ T P E G YT L
Sbjct: 362 VTHLIDEKKVDPKAIFIG-------YAGYTRNAKNATITTSIPSEEALKGTYTDANQTLG 414
Query: 405 FFEVCNKFKDKTWRHFTD------SNGEPFM---VKKDEW---------ITYENNDSIRR 446
FE H+ D NG + V K ++ I+ + S+R
Sbjct: 415 SFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRD 474
Query: 447 KMNYIKDRHLGGAMLWTLDLDD 468
K Y+KD+ LGG +W+ D D+
Sbjct: 475 KGRYVKDKGLGGLFIWSGDQDN 496
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia Entomophaga
Length = 574
Score = 80.5 bits (197), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 107/436 (24%), Positives = 163/436 (37%), Gaps = 96/436 (22%)
Query: 1141 DEFKIVCYFTNWAWY---------RQSGGKYLPSDI------DSDLCTHVIYGFAVLDTD 1185
D+F ++CYFT+W+ Y R +GG+ +DI D +IY F L D
Sbjct: 98 DDFNVLCYFTDWSQYDPRIINKEIRDTGGR--SADILRLNTPDGRPFKRLIYSFGGLIGD 155
Query: 1186 Q---------------LVIKPHDTWADLDNKFY-------------------------EK 1205
+ + P D A+ K E+
Sbjct: 156 KKYSADGNASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANER 215
Query: 1206 VTALKKKGV--------------KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNF 1251
K KG+ + +L+IGGW S +S + + R+ F+ + +F
Sbjct: 216 YNQEKAKGLLGGFRLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDF 273
Query: 1252 ILEH-NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310
F LD+DWEYP P D FA LI+++ A + +S A S
Sbjct: 274 FQRFPMFSHLDIDWEYPGSIGAGNPNSP-DDGANFAILIQQITDAKISNLKGISIASSAD 332
Query: 1311 KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHY 1370
A ID A +M + I++MTYD+ D K H +Y P+D + YS+
Sbjct: 333 PAKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVY----SKYSIDD 388
Query: 1371 WVSHGADRKKVIFGMPMYG-QSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYE--- 1426
V+H D KKV G +T KN S A G T A L +E
Sbjct: 389 AVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPSEEALKGTYTDANQTLGSFEYSV 448
Query: 1427 ------ICDKIQ------KDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVK 1473
IC + ++G+ +V D+ + Y+ ++ D + K +VK
Sbjct: 449 LEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVK 508
Query: 1474 YNDLGGAMIWALDLDD 1489
LGG IW+ D D+
Sbjct: 509 DKGLGGLFIWSGDQDN 524
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 78/156 (50%), Gaps = 8/156 (5%)
Query: 812 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLD 870
R++ K ++ SL+IGGW S+ G +S + R F+E + F ++ F LD+D
Sbjct: 229 RLLHEADKELEFSLSIGGW--SMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDID 286
Query: 871 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDVK 928
WEYP PD D +F + ++++ A + G+ ++++ P+K I+AA
Sbjct: 287 WEYPGSIGAGNPNSPD-DGANFAILIQQITDAKISNLKGISIASSADPAK--IDAANIPA 343
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 964
+ + I++MTYD+ D K H +Y P D
Sbjct: 344 LMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSD 379
Score = 40.4 bits (93), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 76/322 (23%), Positives = 128/322 (39%), Gaps = 53/322 (16%)
Query: 181 KGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMY-KFD 234
KG F L EA+ EL+ L++ F I D R NF+ + + F + F
Sbjct: 222 KGLLGGFRLLHEADKELEFSLSIGGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFS 281
Query: 235 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTS---PGVIDR 291
LD++ + P + ++ ++F+ IQ+++ N +++ S P ID
Sbjct: 282 HLDIDWEYPG---SIGAGNPNSPDDGANFAILIQQITDAKISNLKGISIASSADPAKIDA 338
Query: 292 KT--SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNI-QVTSTIANFNNIESA 348
+L+D V ++L+ F + K + NI + S + + +I+ A
Sbjct: 339 ANIPALMDAGVTG--INLMTYDFFT-------LGDGKLSHHTNIYRDPSDVYSKYSIDDA 389
Query: 349 VYNWI-KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTE---GKYTQMPGYLA 404
V + I +K P+ I IG Y + R+ T P E G YT L
Sbjct: 390 VTHLIDEKKVDPKAIFIG-------YAGYTRNAKNATITTSIPSEEALKGTYTDANQTLG 442
Query: 405 FFEVCNKFKDKTWRHFTD------SNGEPFM---VKKDEW---------ITYENNDSIRR 446
FE H+ D NG + V K ++ I+ + S+R
Sbjct: 443 SFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRD 502
Query: 447 KMNYIKDRHLGGAMLWTLDLDD 468
K Y+KD+ LGG +W+ D D+
Sbjct: 503 KGRYVKDKGLGGLFIWSGDQDN 524
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 79.3 bits (194), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 84/334 (25%), Positives = 135/334 (40%), Gaps = 74/334 (22%)
Query: 732 EPTTTHISVTEKS-PLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLD 790
+P T ++ KS D + YF W Y G+ Y +++ D THI+YGF +
Sbjct: 119 KPLTMNVDPNNKSYNTDPSIVMGTYFVEWGIY--GR-DYTVDNMPVDNLTHILYGFIPIC 175
Query: 791 SENLIIKA-----------------------HDSWADFDNRF--------------YERV 813
N +K+ HD WA + F Y +
Sbjct: 176 GPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAML 235
Query: 814 VTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-DGLDLD 870
+ LK++ +K+ +IGG +L + V+ R F+ V KFL ++F DG+D+D
Sbjct: 236 MALKQRNPDLKIIPSIGG--GTLSDPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDID 292
Query: 871 WEYPTCWQVNCDAG-PDSDKESFGLFVRELH------QAFKPHGLLLSAAVSPSKQVINA 923
WE+P D G P +D ++ +REL +A L++A+ I
Sbjct: 293 WEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIED 352
Query: 924 AYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY------------------EHPDDD 965
D + +D+I MTYD++G W+ GH LY P
Sbjct: 353 V-DYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKG 411
Query: 966 FFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
Y A+ + + +G P+ KLV+G MYG+ +
Sbjct: 412 PAY-TADNGIQLLLAQGVPANKLVLGTAMYGRGW 444
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 93/424 (21%), Positives = 159/424 (37%), Gaps = 91/424 (21%)
Query: 1147 CYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGF-----------------------AVLD 1183
YF W Y G Y ++ D TH++YGF A
Sbjct: 142 TYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRG 198
Query: 1184 TDQLVIKPHDTWADLDNKF--------------YEKVTALKKKG--VKVTLAIGGWNDSA 1227
+ + HD WA F Y + ALK++ +K+ +IGG S
Sbjct: 199 VNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSIGGGTLS- 257
Query: 1228 GNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVDCKQG-PASDKQGF 1285
+ + V+ + R F+A V F+ F DG+D+DWE+P +G P +D +
Sbjct: 258 -DPFYDFVDKKN-RDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAY 315
Query: 1286 ADLIKELRAAFNPHDLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHG 1339
L++ELR + + L++A+ I++ D + +D+I MTYD++G
Sbjct: 316 IALMRELRVMLDELEAETGRTYELTSAIGVGYDKIEDV-DYADAVQYMDYIFAMTYDFYG 374
Query: 1340 QWDKKTGHVAPMYA----LPNDT-------------TPTFNANYSLHYWVSHGADRKKVI 1382
W+ GH +Y P P + A+ + ++ G K++
Sbjct: 375 GWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLV 434
Query: 1383 FGMPMYGQSF------TLADKNKNGLNSQTYGGAEAGENTRA---------RGFLAYYEI 1427
G MYG+ + TL D N + T G G + +G ++
Sbjct: 435 LGTAMYGRGWEGVTPDTLTDPNDPMTGTAT--GKLKGSTAQGVWEDGVIDYKGIKSFMLG 492
Query: 1428 CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 1485
+ +G+ D + P+ + + + FDD + K + K L G W +
Sbjct: 493 ANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEI 551
Query: 1486 DLDD 1489
D D+
Sbjct: 552 DADN 555
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 68/330 (20%), Positives = 131/330 (39%), Gaps = 43/330 (13%)
Query: 180 IKGGYKSFLGLKEANPELKVYLAVKSNFVSIT----SDRESRLNFISSVLEMFDMYKF-D 234
IKG Y + LK+ NP+LK+ ++ +S D+++R F++SV + +KF D
Sbjct: 228 IKGNYAMLMALKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYD 287
Query: 235 GLDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRR------NNYQLTLTSPGV 288
G+D++ + P + + N+ + ++EL L Y+LT ++ GV
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPV-NDGPAYIALMRELRVMLDELEAETGRTYELT-SAIGV 345
Query: 289 IDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVP-----VKPNTKVNIQVTST 338
K VD + +D I +++ N+ + ++P V
Sbjct: 346 GYDKIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDEN 405
Query: 339 IANFNNIESAVYNWIK----KGARPEQIIIGIPFFGKSYR------LFNRSEYGLGAT-- 386
+ N I+ +G ++++G +G+ + L + ++ G
Sbjct: 406 GEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATG 465
Query: 387 -VKGPGTEGKY----TQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMV---KKDEWITY 438
+KG +G + G +F N + + D+ E V E IT+
Sbjct: 466 KLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITF 525
Query: 439 ENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
+++ S+ K NY K L G W +D D+
Sbjct: 526 DDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 74.3 bits (181), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 76/306 (24%), Positives = 129/306 (42%), Gaps = 31/306 (10%)
Query: 1205 KVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDGLDLD 1263
K A+ K + + +IGGW S + +S L + R F+A VV+F + F +D+D
Sbjct: 204 KAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDID 260
Query: 1264 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVIDNAY 1318
WEYP + D + + LIKELR+A + + +S A S A + +
Sbjct: 261 WEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKXSN 320
Query: 1319 DIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLHYWVS 1373
+++ LD I +M+YD+ G W GH +Y+ P D +A ++ Y +
Sbjct: 321 IDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAIDYLHN 379
Query: 1374 H-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD--- 1429
G +K+ G YG+S D L ++ Y T G +++I
Sbjct: 380 ELGIPMEKIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIVXNYM 434
Query: 1430 ------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMI 1482
+ K+G+V++ D ++ ++ D + K E+ N LGG
Sbjct: 435 DAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFS 494
Query: 1483 WALDLD 1488
W+ D D
Sbjct: 495 WSGDQD 500
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/254 (27%), Positives = 106/254 (41%), Gaps = 22/254 (8%)
Query: 765 GKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKA-------HDSWADFDNRFYERVVTLK 817
GKG VP D DL T G ++ I + A E
Sbjct: 147 GKGHIVPLDPYGDLGTARNVGLPPESADTSIESGTFLPYYQQNRAAGLLGGLRELQXKAH 206
Query: 818 KKGVKVSLA--IGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYP 874
G K+ LA IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 207 AMGHKLDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYP 264
Query: 875 TCWQVNCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKA 929
+ D D E++ L ++EL A + +S A S + + +
Sbjct: 265 GGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQL 324
Query: 930 LSESLDWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAP 984
++ LD I +M+YD+ G W GH LY D + F +A ++Y + G P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 985 SRKLVMGMPMYGQA 998
K+ +G YG++
Sbjct: 385 MEKIHLGYANYGRS 398
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 73.6 bits (179), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/273 (25%), Positives = 124/273 (45%), Gaps = 38/273 (13%)
Query: 748 QYFKIVCYFTNWAWYRPGKGKYVPE-DIRTDLCTHIVYGFAVL-----DSENLIIK---- 797
Q V YF G G + + D+R TH+ Y F ++ D N +K
Sbjct: 24 QPLXSVGYFNGGGDVTAGPGGDIDKLDVRQ--ITHLNYSFGLIYNDEKDETNAALKDPAH 81
Query: 798 AHDSW------ADFDNRFYERVVTLKKKG--VKVSLAIGGWNDSLGGKYSRLVNSATARQ 849
H+ W AD +++ L+K+ +KV L++GGW +S +A +R
Sbjct: 82 LHEIWLSPKVQADL-----QKLPALRKQNPDLKVLLSVGGWGAR---GFSGAAATAESRA 133
Query: 850 RFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLL 909
FI K + +Y DG+DLDWE+P A +D+++F ++ L +A L
Sbjct: 134 VFIRSAQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVGEQK-L 192
Query: 910 LSAAVSPSKQVINAAYDVKALSESLDWISVMTYD--YHGQWDKKTGHVA---PLYEHPDD 964
++ AV + + + DVKA++ L++I++ TYD Y Q+ + + P D
Sbjct: 193 VTIAVGANAESPKSWVDVKAVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAADK 252
Query: 965 DFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQ 997
++A+F +N ++ G + +G+ YG+
Sbjct: 253 ----YSADFVVNNYLAAGLKPSQXNLGIGFYGR 281
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 88/378 (23%), Positives = 161/378 (42%), Gaps = 77/378 (20%)
Query: 1167 IDSDLCTHVIYGFAVL------DTDQLVIKP---HDTW------ADLDNKFYEKVTALKK 1211
+D TH+ Y F ++ +T+ + P H+ W ADL +K+ AL+K
Sbjct: 49 LDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLHEIWLSPKVQADL-----QKLPALRK 103
Query: 1212 KG--VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYP-- 1267
+ +KV L++GGW +S + ++R+ FI I ++ DG+DLDWE+P
Sbjct: 104 QNPDLKVLLSVGGW---GARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPVN 160
Query: 1268 KCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENL 1327
W + Q PA D+ F L+K LR A L++ AV + + D+ ++ L
Sbjct: 161 GAWGLVASQ-PA-DRDNFTALLKSLREAVGEQK-LVTIAVGANAESPKSWVDVKAVAPVL 217
Query: 1328 DWISVMTYD--YHGQWDKKTGHVA---PMYALPNDTTPTFNANYSLHYWVSHGADRKKVI 1382
++I++ TYD Y Q+ + + P A + ++A++ ++ +++ G +
Sbjct: 218 NYINLXTYDXAYGTQYFNSNLYDSSHWPTVAAAD----KYSADFVVNNYLAAGLKPSQXN 273
Query: 1383 FGMPMYGQ----------SFTLADKNKNGLNSQTYGG------AEAGENTRARGFLAYYE 1426
G+ YG+ +T AD N + +G A G + ++ Y +
Sbjct: 274 LGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYND 333
Query: 1427 ICDKIQKD---------------GWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEF 1471
I K+ D W+ V+ + G F + +++ + KA++
Sbjct: 334 IVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAE---GKPLFA----LSYENPRSVAIKADY 386
Query: 1472 VKYNDLGGAMIWALDLDD 1489
+K L GA W DD
Sbjct: 387 IKAKGLAGAXFWEYGADD 404
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 76/333 (22%), Positives = 128/333 (38%), Gaps = 63/333 (18%)
Query: 180 IKGGYKSFLGLKEANPELKVYLAVKS----NFVSITSDRESRLNFISSVLEMFDMYKFDG 235
++ + L++ NP+LKV L+V F + ESR FI S ++ Y DG
Sbjct: 91 VQADLQKLPALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDG 150
Query: 236 LDLNVKDPALNXXXXXXLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL 295
+DL+ + P + S +R +F+ ++ L + +T+ + S
Sbjct: 151 IDLDWEFPV--NGAWGLVASQPADRDNFTALLKSLREAVGEQKL-VTIAVGANAESPKSW 207
Query: 296 VDISVVAPLVDLILLKS---------FNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIE 346
VD+ VAP+++ I L + FN++ D P T A+ + +
Sbjct: 208 VDVKAVAPVLNYINLXTYDXAYGTQYFNSNLYDSSHWP-----------TVAAADKYSAD 256
Query: 347 SAVYNWIKKGARPEQIIIGIPFFGK----------------------SYRLFNRSEYGLG 384
V N++ G +P Q +GI F+G+ + F + L
Sbjct: 257 FVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALF 316
Query: 385 ATVK---GPGTEGKYTQMPGYLA------FFEVCNKFKDKTWRHFTDSNGEPFMVKKDEW 435
A++ T KY + G L F E + W + G+P
Sbjct: 317 ASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFA----- 371
Query: 436 ITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
++YEN S+ K +YIK + L GA W DD
Sbjct: 372 LSYENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 31/310 (10%)
Query: 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1259
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1314
+D+DWEYP + D + + LIKELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1369
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1370 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1428
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1429 D---------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 1478
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 XNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 1479 GAMIWALDLD 1488
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/254 (26%), Positives = 105/254 (41%), Gaps = 22/254 (8%)
Query: 765 GKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKA-------HDSWADFDNRFYERVVTLK 817
GKG VP D DL T G ++ I + A E
Sbjct: 147 GKGHIVPLDPYGDLGTARNVGLPPESADTSIESGTFLPYYQQNRAAGLLGGLRELQKKAH 206
Query: 818 KKGVKVSLA--IGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYP 874
G K+ LA IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 207 AMGHKLDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYP 264
Query: 875 TCWQVNCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKA 929
+ D D E++ L ++EL A + +S A S + + +
Sbjct: 265 GGGGDEGNISSDXDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQL 324
Query: 930 LSESLDWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAP 984
++ LD I +M+YD+ G W GH LY D + F +A ++Y + G P
Sbjct: 325 VANGLDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIP 384
Query: 985 SRKLVMGMPMYGQA 998
+ +G YG++
Sbjct: 385 MEXIHLGYANYGRS 398
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/310 (24%), Positives = 130/310 (41%), Gaps = 31/310 (10%)
Query: 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1259
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1314
+D+DWEYP + D + + LIKELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1369
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KKSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1370 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1428
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1429 DK---------IQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 1478
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 KNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 1479 GAMIWALDLD 1488
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 13/189 (6%)
Query: 821 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 879
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 880 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 934
+ D D E++ L ++EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDKDGENYVLLIKELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQLVANGL 329
Query: 935 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 989
D I +M+YD+ G W GH LY D + F +A ++Y + G P +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 990 MGMPMYGQA 998
+G YG++
Sbjct: 390 LGYANYGRS 398
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/310 (23%), Positives = 129/310 (41%), Gaps = 31/310 (10%)
Query: 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH-NFDG 1259
+ +K A+ K + + +IGGW S + +S L + R F+A VV+F + F
Sbjct: 200 ELQKKAHAMGHK-LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSC 256
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVI 1314
+D+DWEYP + D + + LI ELR+A + + +S A S A +
Sbjct: 257 VDIDWEYPGGGGDEGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIACSGVXAXL 316
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPT----FNANYSLH 1369
+ +++ LD I +M+YD+ G W GH +Y+ P D +A ++
Sbjct: 317 KXSNIDQLVANGLDNIYLMSYDFFGTIWADYIGHHTNLYS-PKDPGEQELFDLSAEAAID 375
Query: 1370 YWVSH-GADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC 1428
Y + G + + G YG+S D L ++ Y T G +++I
Sbjct: 376 YLHNELGIPMEXIHLGYANYGRSAVGGD-----LTTRQYTXNGPALGTMENGAPEFFDIV 430
Query: 1429 D---------KIQKDGWVVVRDRKRRIG-PYAFKGDQWVGFDDQAMIHHKAEFVKYNDLG 1478
+ K+G+V++ D ++ ++ D + K E+ N LG
Sbjct: 431 KNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLG 490
Query: 1479 GAMIWALDLD 1488
G W+ D D
Sbjct: 491 GVFSWSGDQD 500
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 87/189 (46%), Gaps = 13/189 (6%)
Query: 821 VKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQV 879
+ ++ +IGGW SL +S L + R+ F+ VV F +++ F +D+DWEYP
Sbjct: 212 LDLAFSIGGW--SLSSYFSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGD 269
Query: 880 NCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAYDVKALSESL 934
+ D D E++ L + EL A + +S A S + + + ++ L
Sbjct: 270 EGNISSDXDGENYVLLIXELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQLVANGL 329
Query: 935 DWISVMTYDYHGQ-WDKKTGHVAPLYEHPD---DDFFYFNANFTMNYWMKK-GAPSRKLV 989
D I +M+YD+ G W GH LY D + F +A ++Y + G P +
Sbjct: 330 DNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIH 389
Query: 990 MGMPMYGQA 998
+G YG++
Sbjct: 390 LGYANYGRS 398
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 54.3 bits (129), Expect = 5e-07, Method: Composition-based stats.
Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 27/161 (16%)
Query: 840 RLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVREL 899
+++N+ TAR + ++ + + G+ +D+E QV+ +D++ F F+R+L
Sbjct: 88 QVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE-----QVSA-----ADRDLFTGFLRQL 137
Query: 900 HQAFKPHGLLLSAAVSPSKQVINA----AYDVKALSESLDWISVMTYDYHGQWDKKTGHV 955
+ G +L+ AV P+K N YD + ++++ +M YD+H + G V
Sbjct: 138 RDRLQAGGYVLTIAV-PAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HAGSEPGPV 195
Query: 956 APLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYG 996
AP+ E T+ + + + PSRK+++G+P+YG
Sbjct: 196 APITE----------IRRTIEFTIAQ-VPSRKIIIGVPLYG 225
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 48/260 (18%), Positives = 103/260 (39%), Gaps = 41/260 (15%)
Query: 210 ITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNXXXXXXLESIANERSDFSTFIQE 269
+ ++ +R N ++++ ++ + G+ ++ + + A +R F+ F+++
Sbjct: 89 VLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVS------------AADRDLFTGFLRQ 136
Query: 270 LSSTLRRNNYQLTLTSPGVIDRKTSLV---DISVVAPLVDLILLKSFNNDHMDDEVVPVK 326
L L+ Y LT+ P + D + +V+ + + +++ H E PV
Sbjct: 137 LRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWHHAGSEPGPVA 196
Query: 327 PNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGAT 386
P T++ + TIA + +IIIG+P +G + + Y G
Sbjct: 197 PITEIRRTIEFTIAQVPS---------------RKIIIGVPLYGYDWII----PYQPGTV 237
Query: 387 VKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRR 446
+ + Y A + +++ +R ++D G V W +E S+ R
Sbjct: 238 ASAISNQNAIERAMRYQAPIQYSAEYQSPFFR-YSDQQGRTHEV----W--FEGVRSMSR 290
Query: 447 KMNYIKDRHLGGAMLWTLDL 466
KM +++ L W L L
Sbjct: 291 KMQIVREYRLQAIGAWQLTL 310
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 29/167 (17%)
Query: 1233 RLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKEL 1292
+++N+ AR+ + ++ + + + G+ +D+E Q A+D+ F +++L
Sbjct: 88 QVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE----------QVSAADRDLFTGFLRQL 137
Query: 1293 RAAFNPHDLLLSAAVSPSKAVIDN-----AYDIPVMSENLDWISVMTYDYHGQWDKKTGH 1347
R +L+ AV P+K DN YD + ++++ +M YD+H + G
Sbjct: 138 RDRLQAGGYVLTIAV-PAKTS-DNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HAGSEPGP 194
Query: 1348 VAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTL 1394
VAP+ + ++ + ++ RK +I G+P+YG + +
Sbjct: 195 VAPITEI----------RRTIEFTIAQVPSRK-IIIGVPLYGYDWII 230
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 82/183 (44%), Gaps = 29/183 (15%)
Query: 815 TLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYP 874
T K VK+ +++ + G+++ +N AR+ I+ ++ F +Y+ DG D+D+E
Sbjct: 60 TAHKHNVKILISLA---KNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEY 116
Query: 875 TCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESL 934
W D + S +F R L+ A K L + AV+ ++ +
Sbjct: 117 DNW--------DKNFPSLLVFARGLYLA-KEKNXLXTCAVNSRWLNYGTEWE-----QYF 162
Query: 935 DWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSR-KLVMGMP 993
D+I++ +YD DK H + DDF + YW ++ S+ K+V G+P
Sbjct: 163 DYINLXSYDRGAFTDKPVQHASY------DDFVK-----DLKYWNEQCRASKSKIVGGLP 211
Query: 994 MYG 996
YG
Sbjct: 212 FYG 214
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 104/280 (37%), Gaps = 66/280 (23%)
Query: 1211 KKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCW 1270
K VK+ +++ +S G +++ +N +AR + I ++ F E+ DG D+D+E W
Sbjct: 63 KHNVKILISLA--KNSPG-EFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYDNW 119
Query: 1271 QVDCKQGPASDKQGFADLIKELRAAF--NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLD 1328
+ F L+ R + + L + AV+ ++ + D
Sbjct: 120 D-----------KNFPSLLVFARGLYLAKEKNXLXTCAVNSRWLNYGTEWE-----QYFD 163
Query: 1329 WISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSH-GADRKKVIFGMPM 1387
+I++ +YD DK H A +D L YW A + K++ G+P
Sbjct: 164 YINLXSYDRGAFTDKPVQH-----ASYDDFVK------DLKYWNEQCRASKSKIVGGLPF 212
Query: 1388 YGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYY--EICDKIQKDGWVVVRDRKRR 1445
YG S+ G + R G L + E D K
Sbjct: 213 YGYSW----------EESLQGAVDDVRGIRYSGILKHLGNEAAD-------------KDN 249
Query: 1446 IGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWAL 1485
IG + G + I +K +F+K ND G IW L
Sbjct: 250 IGKTYYNG--------RPTIANKCKFIKENDYAGVXIWQL 281
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWAD--LDNK 1201
+++CY R LP ++ TH+I L+ D I +D D + N
Sbjct: 14 RVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEMYNP 73
Query: 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
+ +V LK+ GVKV +GG +A Y L Q+ ++ ++ + H DGLD
Sbjct: 74 LWAEVPVLKRSGVKVMGMLGG---AAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDGLD 130
Query: 1262 LDWE 1265
LD E
Sbjct: 131 LDVE 134
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 11/130 (8%)
Query: 748 QYFKIVCYFTNWAWYRPGKGKYV---PEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWAD 804
++ +++CY P +G YV P THI+ L+ + I +D D
Sbjct: 11 EHRRVICYHQTLC---PNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPD 67
Query: 805 FD--NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY 862
+ N + V LK+ GVKV +GG + G Y L +R+ + ++ + ++
Sbjct: 68 HEMYNPLWAEVPVLKRSGVKVMGMLGG---AAQGSYRCLDGDQEKFERYYQPLLAMVRRH 124
Query: 863 QFDGLDLDWE 872
Q DGLDLD E
Sbjct: 125 QLDGLDLDVE 134
>pdb|3N11|A Chain A, Crystal Stricture Of Wild-Type Chitinase From Bacillus
Cereus Nctu2
pdb|3N12|A Chain A, Crystal Stricture Of Chitinase In Complex With Zinc Atoms
From Bacillus Cereus Nctu2
Length = 333
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1259 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
G+D+D E Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1316 NAY 1318
Y
Sbjct: 169 GGY 171
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + LK KG KV L+IGG N + L+ A+ RFI + + KY FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 866 GLDLDWE 872
G+D+D E
Sbjct: 112 GIDIDLE 118
Score = 32.0 bits (71), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 198 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118
>pdb|3N17|A Chain A, Crystal Stricture Of E145qY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
Length = 333
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1259 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
G+D+D + Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLQSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1316 NAY 1318
Y
Sbjct: 169 GGY 171
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + LK KG KV L+IGG N + L+ A+ RFI + + KY FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 866 GLDLDWE 872
G+D+D +
Sbjct: 112 GIDIDLQ 118
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 198 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N15|A Chain A, Crystal Stricture Of E145q Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 43.9 bits (102), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 12/123 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1259 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
G+D+D + Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLQSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1316 NAY 1318
Y
Sbjct: 169 GGY 171
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + LK KG KV L+IGG N + L+ A+ RFI + + KY FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 866 GLDLDWE 872
G+D+D +
Sbjct: 112 GIDIDLQ 118
Score = 32.0 bits (71), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 198 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLQ 118
>pdb|3N18|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
NAG FROM Bacillus Cereus Nctu2
pdb|3N1A|A Chain A, Crystal Stricture Of E145gY227F CHITINASE IN COMPLEX WITH
CYCLO-(L- His-L-Pro) From Bacillus Cereus Nctu2
Length = 333
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + LK KG KV L+IGG N + L+ A+ RFI + + KY FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 866 GLDLD 870
G+D+D
Sbjct: 112 GIDID 116
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1259 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
G+D+D Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIDLGSGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1316 NAY 1318
Y
Sbjct: 169 GGY 171
Score = 31.6 bits (70), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 198 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNV 240
KV L++ N V + D ++ FI+S+ + D Y FDG+D+++
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDL 117
>pdb|3N13|A Chain A, Crystal Stricture Of D143a Chitinase In Complex With Nag
From Bacillus Cereus Nctu2
Length = 333
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 12/123 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D F ++ LK KG KV L+IGG N L+ A+ +FI + + I ++ FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 1259 GLDLDWE---YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
G+D+ E Y + K I+ + + P D LLS A P A +
Sbjct: 112 GIDIALESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGP-DFLLSMA--PETAYVQ 168
Query: 1316 NAY 1318
Y
Sbjct: 169 GGY 171
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 6/67 (8%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + LK KG KV L+IGG N + L+ A+ RFI + + KY FD
Sbjct: 58 DADFKSDISYLKSKGKKVVLSIGGQNGVV------LLPDNAAKDRFINSIQSLIDKYGFD 111
Query: 866 GLDLDWE 872
G+D+ E
Sbjct: 112 GIDIALE 118
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 198 KVYLAVKS-NFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
KV L++ N V + D ++ FI+S+ + D Y FDG+D+
Sbjct: 74 KVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDI 115
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H At
1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 38.9 bits (89), Expect = 0.022, Method: Composition-based stats.
Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 69 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 122
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D D EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 123 GLDGVDFDDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 177
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 178 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 207
>pdb|4AC1|X Chain X, The Structure Of A Fungal Endo-Beta-N-Acetylglucosaminidase
From Glycosyl Hydrolase Family 18, At 1.3a Resolution
Length = 283
Score = 38.9 bits (89), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 15/113 (13%)
Query: 1199 DNKFY---EKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH 1255
D FY + +K+ GVKV +GG + N + + + + I+
Sbjct: 58 DPHFYTLWNETITMKQAGVKVMGMVGGAAPGSFNTQTLDSPDSATFEHYYGQLRDAIVNF 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVS 1308
+G+DLD E P +QG LI LRA F P L+ A V+
Sbjct: 118 QLEGMDLDVEQPMS------------QQGIDRLIARLRADFGPDFLITLAPVA 158
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 806 DNRFY---ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNS--ATARQRFIEHVVKFLL 860
D FY +T+K+ GVKV +GG + G ++ ++S + + + + ++
Sbjct: 58 DPHFYTLWNETITMKQAGVKVMGMVGG--AAPGSFNTQTLDSPDSATFEHYYGQLRDAIV 115
Query: 861 KYQFDGLDLDWEYPTCWQ--------VNCDAGPD 886
+Q +G+DLD E P Q + D GPD
Sbjct: 116 NFQLEGMDLDVEQPMSQQGIDRLIARLRADFGPD 149
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D D +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDQYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 37.7 bits (86), Expect = 0.053, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D D +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDDYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 37.4 bits (85), Expect = 0.062, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D + EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFEDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 37.4 bits (85), Expect = 0.066, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D + EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFNDEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|3IAN|A Chain A, Crystal Structure Of A Chitinase From Lactococcus Lactis
Subsp. Lactis
Length = 321
Score = 37.0 bits (84), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D +F +++ L +G V +A+GG + + L SQ+ S F+ ++ + + FD
Sbjct: 65 DTEFRAEISKLNAEGKSVLIALGG-----ADAHIELKKSQE--SDFVNEIIRLVDTYGFD 117
Query: 1259 GLDLDWEYPKCWQVDCK 1275
GLD+D E D +
Sbjct: 118 GLDIDLEQAAIEAADNQ 134
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + L +G V +A+GG + + K S+ F+ +++ + Y FD
Sbjct: 65 DTEFRAEISKLNAEGKSVLIALGGADAHIELKKSQ-------ESDFVNEIIRLVDTYGFD 117
Query: 866 GLDLDWE 872
GLD+D E
Sbjct: 118 GLDIDLE 124
Score = 30.8 bits (68), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 190 LKEANPELK-VYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPAL 245
+ + N E K V +A+ I + +F++ ++ + D Y FDGLD++++ A+
Sbjct: 72 ISKLNAEGKSVLIALGGADAHIELKKSQESDFVNEIIRLVDTYGFDGLDIDLEQAAI 128
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 37.0 bits (84), Expect = 0.094, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D D Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFDDAYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 1204 EKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++++A+K V+V +++GG + + + + S + + I +N DG+D
Sbjct: 64 DQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGID 123
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIP 1321
+D+E+ + +DK FA+ I L + ++ A++SP +V + Y +
Sbjct: 124 IDYEHFQN----------TDKNTFAECIGRLITTLKKNGVISFASISPFPSV--DEYYLA 171
Query: 1322 VMSENLDWISVMTYDYHGQWDKKT 1345
+ +E + I+ + Y + +D T
Sbjct: 172 LFNEYKNAINHINYQFKA-YDSST 194
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 53/109 (48%), Gaps = 28/109 (25%)
Query: 821 VKVSLAIGGWNDSLGGKY---------SRLVNSATARQRFIEHVVKFLLKYQFDGLDLDW 871
V+V++++GG S+G S + N+ T+ R I+ +Y DG+D+D+
Sbjct: 76 VRVAVSLGG--ASVGSNTVQFQAASVDSWVSNAVTSLTRIIQ-------RYNLDGIDIDY 126
Query: 872 EYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQV 920
E+ +Q ++DK +F + L K +G++ A++SP V
Sbjct: 127 EH---FQ-------NTDKNTFAECIGRLITTLKKNGVISFASISPFPSV 165
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 36.2 bits (82), Expect = 0.15, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D EY + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFADEYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 36.2 bits (82), Expect = 0.16, Method: Composition-based stats.
Identities = 40/160 (25%), Positives = 71/160 (44%), Gaps = 23/160 (14%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN--SQQARSKFIAHVVNFILEH 1255
LDN ++ L+++G+KV L++ G + AG N SQQA S F + + + ++
Sbjct: 64 LDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG-----FANFPSQQAASAFAKQLSDAVAKY 117
Query: 1256 NFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315
DG+D + +Y + Q + F L+ LRA P ++ + P+ + +
Sbjct: 118 GLDGVDFNDQYAEYGNNGTAQ---PNDSSFVHLVTALRANM-PDKIISLYNIGPAASRL- 172
Query: 1316 NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355
+Y +S+ D+ Y+G W P ALP
Sbjct: 173 -SYGGVDVSDKFDY---AWNPYYGTWQ------VPGIALP 202
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From Streptomyces
Coelicolor
Length = 302
Score = 34.7 bits (78), Expect = 0.36, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 1200 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDG 1259
++F V A + G KV +++GG K + VNS + + F V + E+ FDG
Sbjct: 62 DQFKADVRAKQAAGKKVIISVGG------EKGTVSVNSSASATNFANSVYSVXREYGFDG 115
Query: 1260 LDLDWE 1265
+D+D E
Sbjct: 116 VDIDLE 121
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query: 807 NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866
++F V + G KV +++GG ++ VNS+ + F V +Y FDG
Sbjct: 62 DQFKADVRAKQAAGKKVIISVGGEKGTVS------VNSSASATNFANSVYSVXREYGFDG 115
Query: 867 LDLDWE 872
+D+D E
Sbjct: 116 VDIDLE 121
>pdb|3POH|A Chain A, Crystal Structure Of An Endo-Beta-N-Acetylglucosaminidase
(Bt_3987) From Bacteroides Thetaiotaomicron Vpi-5482 At
1.55 A Resolution
Length = 451
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 1209 LKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEY 1266
L+++GVKV L + G +D G ++L S+Q F V + +N DG++ D EY
Sbjct: 237 LRRRGVKVLLGLLGNHDITG--LAQL--SEQGAKDFAREVAQYCKAYNLDGVNYDDEY 290
>pdb|4AXN|A Chain A, Hallmarks Of Processive And Non-Processive Glycoside
Hydrolases Revealed From Computational And
Crystallographic Studies Of The Serratia Marcescens
Chitinases
pdb|4AXN|B Chain B, Hallmarks Of Processive And Non-Processive Glycoside
Hydrolases Revealed From Computational And
Crystallographic Studies Of The Serratia Marcescens
Chitinases
Length = 328
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 76/196 (38%), Gaps = 22/196 (11%)
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F +V L +G V + SLGG + + + + +++ + Y FD
Sbjct: 82 DTEFRRQVGVLNSQGRAVLI-------SLGGADAHIELKTGDEDKLKDEIIRLVEVYGFD 134
Query: 866 GLDLDWEYPTCWQVNCDAGPDSDKESFGLFVREL--HQAFKPHGLLLSAAVSPSKQVINA 923
GLD+D E G ++K ++++ H A + ++S A N
Sbjct: 135 GLDIDLEQAAI-------GAANNKTVLPAALKKVKDHYAAQGKNFIISMAPEFPYLRTNG 187
Query: 924 AYD--VKALSESLDWISVMTYDYHGQ--W-DKKTGHVAPLYEHPDDDF-FYFNANFTMNY 977
Y + AL D+I+ Y+ G W D+ + + +DF +Y +
Sbjct: 188 TYLDYINALEGYYDFIAPQYYNQGGDGIWVDELNAWITQNNDAMKEDFLYYLTESLVTGT 247
Query: 978 WMKKGAPSRKLVMGMP 993
P+ K V+G+P
Sbjct: 248 RGYAKIPAAKFVIGLP 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,577,642
Number of Sequences: 62578
Number of extensions: 1950676
Number of successful extensions: 4896
Number of sequences better than 100.0: 82
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4085
Number of HSP's gapped (non-prelim): 271
length of query: 1490
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1379
effective length of database: 8,027,179
effective search space: 11069479841
effective search space used: 11069479841
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)