Query psy10300
Match_columns 1490
No_of_seqs 948 out of 4643
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:57:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02873 GH18_IDGF The IDGF's ( 100.0 1.8E-69 4E-74 652.8 35.8 360 125-487 1-413 (413)
2 cd02872 GH18_chitolectin_chito 100.0 9.5E-68 2.1E-72 636.0 34.3 349 126-487 1-362 (362)
3 cd02873 GH18_IDGF The IDGF's ( 100.0 3.2E-59 6.8E-64 563.9 36.6 345 1144-1490 1-394 (413)
4 KOG2806|consensus 100.0 4.2E-60 9.2E-65 572.1 28.3 353 119-488 47-421 (432)
5 cd02872 GH18_chitolectin_chito 100.0 1.1E-58 2.3E-63 557.5 35.3 337 1145-1490 1-343 (362)
6 cd02878 GH18_zymocin_alpha Zym 100.0 4.7E-58 1E-62 543.5 31.0 324 125-467 1-345 (345)
7 cd02878 GH18_zymocin_alpha Zym 100.0 1.7E-56 3.7E-61 530.2 35.4 333 1144-1488 1-345 (345)
8 COG3325 ChiA Chitinase [Carboh 100.0 1.1E-56 2.3E-61 506.2 26.3 344 1139-1488 34-423 (441)
9 smart00636 Glyco_18 Glycosyl h 100.0 5.2E-56 1.1E-60 529.3 30.6 320 125-467 1-334 (334)
10 cd02879 GH18_plant_chitinase_c 100.0 1.8E-55 3.9E-60 511.2 27.8 277 124-472 3-298 (299)
11 cd06548 GH18_chitinase The GH1 100.0 3.5E-55 7.5E-60 516.3 27.0 291 126-467 1-322 (322)
12 smart00636 Glyco_18 Glycosyl h 100.0 4.5E-54 9.7E-59 512.7 34.1 324 1144-1488 1-334 (334)
13 KOG2806|consensus 100.0 1.6E-54 3.5E-59 523.5 29.6 332 1144-1490 53-399 (432)
14 cd02879 GH18_plant_chitinase_c 100.0 6.3E-54 1.4E-58 498.2 31.3 279 1143-1490 3-295 (299)
15 cd06548 GH18_chitinase The GH1 100.0 6.2E-54 1.3E-58 505.6 31.6 296 1145-1488 1-322 (322)
16 COG3325 ChiA Chitinase [Carboh 100.0 5.1E-53 1.1E-57 476.4 26.6 354 120-489 34-438 (441)
17 PF00704 Glyco_hydro_18: Glyco 100.0 1.5E-49 3.2E-54 477.3 28.3 327 124-467 1-343 (343)
18 PF00704 Glyco_hydro_18: Glyco 100.0 3.3E-48 7.2E-53 465.5 31.1 332 1143-1488 1-343 (343)
19 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.9E-48 4.2E-53 458.6 25.2 294 1144-1489 4-311 (318)
20 cd02876 GH18_SI-CLP Stabilin-1 100.0 9.8E-47 2.1E-51 444.1 24.8 290 125-468 4-311 (318)
21 cd02875 GH18_chitobiase Chitob 100.0 4.5E-45 9.8E-50 432.7 31.6 296 1138-1490 31-341 (358)
22 cd02874 GH18_CFLE_spore_hydrol 100.0 1.8E-45 4E-50 433.5 27.4 293 1144-1489 3-306 (313)
23 cd02875 GH18_chitobiase Chitob 100.0 4.2E-44 9.2E-49 424.4 30.5 298 120-473 32-345 (358)
24 cd06545 GH18_3CO4_chitinase Th 100.0 6.8E-41 1.5E-45 381.5 25.8 241 1145-1489 1-243 (253)
25 cd02874 GH18_CFLE_spore_hydrol 100.0 1.2E-40 2.7E-45 392.5 26.0 285 125-469 3-307 (313)
26 cd06549 GH18_trifunctional GH1 100.0 1.3E-40 2.9E-45 386.9 26.0 287 1145-1489 2-294 (298)
27 cd06545 GH18_3CO4_chitinase Th 100.0 1.3E-39 2.9E-44 370.9 24.4 250 752-1059 1-253 (253)
28 cd06549 GH18_trifunctional GH1 100.0 5.9E-36 1.3E-40 348.0 24.8 282 126-469 2-295 (298)
29 cd06546 GH18_CTS3_chitinase GH 100.0 2E-33 4.2E-38 317.5 24.3 206 751-994 1-217 (256)
30 cd00598 GH18_chitinase-like Th 100.0 2.4E-32 5.3E-37 304.1 23.1 175 1145-1336 1-177 (210)
31 cd00598 GH18_chitinase-like Th 100.0 2.6E-32 5.6E-37 303.9 19.4 173 126-314 1-177 (210)
32 cd02871 GH18_chitinase_D-like 100.0 2.8E-32 6E-37 319.1 20.4 221 750-995 1-248 (312)
33 COG3858 Predicted glycosyl hyd 100.0 1.1E-30 2.4E-35 295.2 23.6 247 1205-1489 152-411 (423)
34 cd06544 GH18_narbonin Narbonin 100.0 1.2E-30 2.5E-35 292.4 19.5 231 769-1041 13-252 (253)
35 cd06546 GH18_CTS3_chitinase GH 100.0 7.5E-30 1.6E-34 288.4 25.6 206 1144-1387 1-217 (256)
36 cd06544 GH18_narbonin Narbonin 100.0 2.4E-29 5.2E-34 281.9 19.1 197 144-373 14-221 (253)
37 cd02871 GH18_chitinase_D-like 100.0 2.6E-28 5.6E-33 285.6 26.4 221 1143-1388 1-248 (312)
38 cd02877 GH18_hevamine_XipI_cla 99.9 6.4E-25 1.4E-29 249.6 21.3 236 752-1044 3-270 (280)
39 COG3858 Predicted glycosyl hyd 99.9 4.4E-25 9.5E-30 250.1 18.9 221 207-470 182-413 (423)
40 KOG2091|consensus 99.9 4E-25 8.8E-30 237.0 16.3 296 1140-1487 76-383 (392)
41 cd06542 GH18_EndoS-like Endo-b 99.9 1.2E-23 2.5E-28 241.0 20.9 253 751-1063 2-254 (255)
42 cd06542 GH18_EndoS-like Endo-b 99.9 1.4E-22 3.1E-27 232.0 20.0 206 1144-1389 2-207 (255)
43 COG3469 Chitinase [Carbohydrat 99.9 1.4E-22 3.1E-27 211.1 16.6 269 745-1047 21-312 (332)
44 cd02877 GH18_hevamine_XipI_cla 99.8 7.7E-20 1.7E-24 208.1 21.9 184 1168-1388 21-229 (280)
45 cd06543 GH18_PF-ChiA-like PF-C 99.8 2.8E-20 6E-25 213.2 14.1 157 775-947 22-184 (294)
46 cd06543 GH18_PF-ChiA-like PF-C 99.8 1.8E-19 3.8E-24 206.7 18.7 157 1169-1340 23-184 (294)
47 KOG4701|consensus 99.8 4.9E-19 1.1E-23 193.8 20.7 236 751-1041 28-295 (568)
48 KOG2091|consensus 99.7 4.2E-17 9E-22 175.9 17.9 285 125-466 80-383 (392)
49 COG3469 Chitinase [Carbohydrat 99.7 2.6E-16 5.6E-21 164.8 16.8 222 1141-1387 24-266 (332)
50 KOG4701|consensus 99.0 6E-09 1.3E-13 115.6 17.5 207 1142-1388 26-257 (568)
51 PF01607 CBM_14: Chitin bindin 98.6 1.9E-08 4.2E-13 85.2 3.3 48 550-597 5-53 (53)
52 PF01607 CBM_14: Chitin bindin 98.6 3.1E-08 6.7E-13 83.9 2.8 48 617-664 5-53 (53)
53 smart00494 ChtBD2 Chitin-bindi 98.4 1.9E-07 4E-12 80.0 4.4 51 548-598 3-55 (56)
54 smart00494 ChtBD2 Chitin-bindi 98.4 2.9E-07 6.2E-12 78.8 4.5 49 617-665 7-55 (56)
55 cd06547 GH85_ENGase Endo-beta- 98.2 1.2E-05 2.5E-10 94.9 12.9 157 1204-1393 50-216 (339)
56 cd06547 GH85_ENGase Endo-beta- 98.0 3.4E-05 7.3E-10 91.0 13.2 156 812-1000 51-216 (339)
57 PF13200 DUF4015: Putative gly 97.5 0.0065 1.4E-07 70.5 20.4 137 1201-1339 62-230 (316)
58 PF03644 Glyco_hydro_85: Glyco 97.2 0.00055 1.2E-08 80.0 6.7 156 1204-1391 46-209 (311)
59 PF03644 Glyco_hydro_85: Glyco 97.1 0.00057 1.2E-08 79.9 6.2 155 812-998 47-209 (311)
60 PF02638 DUF187: Glycosyl hydr 96.9 0.004 8.7E-08 73.2 10.7 136 1236-1390 134-299 (311)
61 PF11340 DUF3142: Protein of u 96.6 0.025 5.4E-07 59.5 12.3 115 844-996 22-138 (181)
62 PF02638 DUF187: Glycosyl hydr 96.5 0.016 3.4E-07 68.3 11.5 137 212-369 134-297 (311)
63 PF11340 DUF3142: Protein of u 96.5 0.032 7E-07 58.7 12.4 84 1237-1335 22-107 (181)
64 PF13200 DUF4015: Putative gly 95.8 0.34 7.4E-06 56.6 17.2 137 809-947 63-231 (316)
65 KOG2331|consensus 94.5 0.29 6.2E-06 57.2 11.4 89 1206-1304 117-209 (526)
66 TIGR01370 cysRS possible cyste 93.4 0.84 1.8E-05 53.4 12.8 126 811-941 85-236 (315)
67 KOG2331|consensus 92.7 0.46 1E-05 55.5 9.1 83 813-905 117-200 (526)
68 PF14883 GHL13: Hypothetical g 91.2 2.7 5.8E-05 47.8 12.7 199 1171-1393 30-266 (294)
69 TIGR01370 cysRS possible cyste 90.0 1.4 3E-05 51.7 9.6 126 1203-1334 84-236 (315)
70 PF03427 CBM_19: Carbohydrate 89.6 0.49 1.1E-05 40.4 4.0 21 561-581 35-55 (61)
71 PF14871 GHL6: Hypothetical gl 85.4 2 4.4E-05 43.8 6.5 62 809-871 46-132 (132)
72 PF14871 GHL6: Hypothetical gl 79.9 5.2 0.00011 40.8 6.9 63 1201-1264 45-132 (132)
73 PF14883 GHL13: Hypothetical g 79.0 34 0.00074 39.3 13.5 200 778-1001 30-267 (294)
74 COG1306 Uncharacterized conser 78.3 6.3 0.00014 44.4 7.3 94 1243-1339 196-300 (400)
75 cd02810 DHOD_DHPD_FMN Dihydroo 78.2 8.3 0.00018 45.2 9.1 109 184-311 86-196 (289)
76 cd02810 DHOD_DHPD_FMN Dihydroo 75.5 22 0.00048 41.6 11.7 110 808-941 84-197 (289)
77 TIGR02402 trehalose_TreZ malto 75.2 7.5 0.00016 49.7 8.1 67 1199-1265 159-246 (542)
78 PRK14706 glycogen branching en 73.6 20 0.00042 46.8 11.3 66 1199-1264 216-307 (639)
79 cd02929 TMADH_HD_FMN Trimethyl 73.3 70 0.0015 38.9 15.5 133 1200-1334 83-259 (370)
80 TIGR02102 pullulan_Gpos pullul 71.9 16 0.00034 50.2 10.2 66 1200-1265 555-644 (1111)
81 cd04747 OYE_like_5_FMN Old yel 70.7 85 0.0018 38.0 15.1 108 1200-1309 78-220 (361)
82 COG3889 Predicted solute bindi 70.4 2.5 5.5E-05 53.4 2.2 13 262-274 320-332 (872)
83 PRK05402 glycogen branching en 70.2 21 0.00046 47.5 10.8 66 1199-1264 314-405 (726)
84 PRK12313 glycogen branching en 69.7 23 0.00049 46.5 10.8 65 1199-1263 219-309 (633)
85 TIGR02103 pullul_strch alpha-1 69.7 19 0.00042 48.3 10.1 66 1200-1265 404-498 (898)
86 COG3889 Predicted solute bindi 69.5 2.5 5.4E-05 53.5 1.8 14 265-278 319-332 (872)
87 cd04733 OYE_like_2_FMN Old yel 68.9 19 0.00042 43.2 9.2 93 216-312 147-257 (338)
88 cd04734 OYE_like_3_FMN Old yel 67.7 46 0.001 40.0 12.1 132 1200-1334 77-250 (343)
89 COG1649 Uncharacterized protei 67.7 11 0.00023 45.8 6.6 98 844-943 180-308 (418)
90 TIGR02102 pullulan_Gpos pullul 67.0 23 0.00049 48.7 10.1 66 807-872 555-644 (1111)
91 TIGR02104 pulA_typeI pullulana 66.3 28 0.0006 45.4 10.6 66 1200-1265 229-321 (605)
92 cd02930 DCR_FMN 2,4-dienoyl-Co 66.1 1.1E+02 0.0024 36.9 15.1 133 1199-1334 76-245 (353)
93 COG1306 Uncharacterized conser 65.7 18 0.0004 40.9 7.3 91 853-946 199-300 (400)
94 PRK13523 NADPH dehydrogenase N 65.7 27 0.0006 41.8 9.6 92 215-312 139-248 (337)
95 PLN02960 alpha-amylase 65.7 43 0.00094 44.5 11.8 65 1199-1263 465-556 (897)
96 cd02801 DUS_like_FMN Dihydrour 65.0 15 0.00033 41.3 7.0 108 190-311 48-158 (231)
97 cd04733 OYE_like_2_FMN Old yel 64.8 31 0.00067 41.4 9.9 132 1200-1334 82-257 (338)
98 TIGR02402 trehalose_TreZ malto 64.8 18 0.0004 46.2 8.4 66 807-872 160-246 (542)
99 PRK13523 NADPH dehydrogenase N 64.8 59 0.0013 39.0 12.1 130 1200-1334 81-248 (337)
100 cd04735 OYE_like_4_FMN Old yel 64.5 22 0.00048 42.9 8.6 97 215-314 141-258 (353)
101 COG4724 Endo-beta-N-acetylgluc 64.4 13 0.00027 43.6 5.9 105 1173-1296 111-219 (553)
102 cd04747 OYE_like_5_FMN Old yel 64.2 36 0.00077 41.2 10.1 69 216-287 142-220 (361)
103 PRK12568 glycogen branching en 63.2 37 0.00081 44.6 10.6 65 1199-1263 318-408 (730)
104 PLN03244 alpha-amylase; Provis 63.0 54 0.0012 43.0 11.6 65 1199-1263 440-531 (872)
105 TIGR02100 glgX_debranch glycog 62.2 41 0.00089 44.4 10.9 67 1199-1265 244-343 (688)
106 TIGR02103 pullul_strch alpha-1 60.7 32 0.0007 46.3 9.6 66 807-872 404-498 (898)
107 COG1649 Uncharacterized protei 60.6 21 0.00047 43.3 7.3 102 213-314 180-308 (418)
108 PF05283 MGC-24: Multi-glycosy 60.3 40 0.00088 36.3 8.5 10 624-633 53-62 (186)
109 PRK14581 hmsF outer membrane N 60.0 61 0.0013 42.3 11.6 205 1170-1393 346-614 (672)
110 PLN02447 1,4-alpha-glucan-bran 60.0 48 0.001 43.7 10.8 64 1200-1263 300-390 (758)
111 cd02933 OYE_like_FMN Old yello 59.4 26 0.00057 42.0 7.9 68 217-288 151-228 (338)
112 cd04734 OYE_like_3_FMN Old yel 59.2 46 0.001 40.0 10.0 94 215-312 138-250 (343)
113 cd02931 ER_like_FMN Enoate red 57.8 43 0.00094 40.9 9.5 70 215-287 147-227 (382)
114 PRK05402 glycogen branching en 57.6 50 0.0011 44.1 10.8 64 807-870 315-404 (726)
115 TIGR01515 branching_enzym alph 57.2 71 0.0015 41.7 11.9 66 1199-1264 205-296 (613)
116 cd02929 TMADH_HD_FMN Trimethyl 57.0 41 0.00089 40.9 9.1 93 216-311 148-258 (370)
117 PRK03705 glycogen debranching 56.7 29 0.00063 45.4 8.2 66 1200-1265 242-338 (658)
118 PF02055 Glyco_hydro_30: O-Gly 56.7 28 0.00061 43.9 7.8 125 153-279 127-270 (496)
119 PRK12313 glycogen branching en 56.5 53 0.0011 43.1 10.6 64 807-870 220-309 (633)
120 cd02930 DCR_FMN 2,4-dienoyl-Co 56.4 54 0.0012 39.6 10.0 92 216-311 135-244 (353)
121 cd02932 OYE_YqiM_FMN Old yello 55.5 99 0.0021 37.1 12.0 92 1240-1334 152-262 (336)
122 cd04735 OYE_like_4_FMN Old yel 55.4 49 0.0011 40.0 9.4 136 1200-1337 78-259 (353)
123 TIGR02104 pulA_typeI pullulana 55.3 58 0.0013 42.5 10.6 66 807-872 229-321 (605)
124 cd04740 DHOD_1B_like Dihydroor 55.1 90 0.0019 36.6 11.4 88 1201-1310 76-164 (296)
125 PLN03244 alpha-amylase; Provis 55.0 90 0.002 41.0 11.7 64 807-870 441-531 (872)
126 PLN02447 1,4-alpha-glucan-bran 54.5 93 0.002 41.2 12.1 64 807-870 300-390 (758)
127 PF13199 Glyco_hydro_66: Glyco 54.5 20 0.00044 45.5 6.0 91 1235-1334 237-330 (559)
128 PRK07259 dihydroorotate dehydr 54.1 91 0.002 36.7 11.2 87 809-917 79-167 (301)
129 cd04740 DHOD_1B_like Dihydroor 54.0 78 0.0017 37.1 10.6 88 808-917 76-164 (296)
130 cd02931 ER_like_FMN Enoate red 53.9 54 0.0012 40.0 9.5 107 1200-1309 83-227 (382)
131 PLN02960 alpha-amylase 53.3 99 0.0021 41.3 11.9 64 807-870 466-556 (897)
132 PRK10605 N-ethylmaleimide redu 53.0 69 0.0015 38.8 10.1 95 215-313 156-271 (362)
133 PF02057 Glyco_hydro_59: Glyco 52.6 21 0.00045 45.7 5.6 80 184-279 115-202 (669)
134 PRK14705 glycogen branching en 52.1 86 0.0019 43.8 11.7 65 1200-1264 815-905 (1224)
135 PRK10605 N-ethylmaleimide redu 50.9 2.3E+02 0.005 34.4 14.0 94 1239-1335 156-271 (362)
136 cd02933 OYE_like_FMN Old yello 50.5 58 0.0013 39.1 8.8 67 1241-1310 151-228 (338)
137 PF13199 Glyco_hydro_66: Glyco 50.2 29 0.00064 44.1 6.5 91 843-942 238-331 (559)
138 PF14587 Glyco_hydr_30_2: O-Gl 50.0 26 0.00056 42.1 5.6 104 1204-1307 108-224 (384)
139 cd06592 GH31_glucosidase_KIAA1 48.6 1.5E+02 0.0032 35.1 11.7 66 1202-1267 72-166 (303)
140 PRK09441 cytoplasmic alpha-amy 48.4 1E+02 0.0022 39.1 11.0 29 1237-1265 207-235 (479)
141 PRK07259 dihydroorotate dehydr 47.5 1.3E+02 0.0027 35.5 11.0 87 1202-1310 79-167 (301)
142 COG1902 NemA NADH:flavin oxido 47.5 2E+02 0.0043 34.8 12.6 138 806-945 82-263 (363)
143 PLN02877 alpha-amylase/limit d 47.4 81 0.0018 42.7 10.0 66 1200-1265 466-561 (970)
144 PLN02411 12-oxophytodienoate r 46.8 59 0.0013 39.8 8.3 67 217-287 164-240 (391)
145 PRK03705 glycogen debranching 46.7 56 0.0012 42.8 8.4 66 807-872 242-338 (658)
146 TIGR01515 branching_enzym alph 46.3 1.6E+02 0.0034 38.6 12.5 65 807-871 206-296 (613)
147 PF02065 Melibiase: Melibiase; 46.0 51 0.0011 40.3 7.4 70 211-286 162-235 (394)
148 PF02684 LpxB: Lipid-A-disacch 45.6 71 0.0015 38.8 8.5 107 181-311 12-140 (373)
149 cd02803 OYE_like_FMN_family Ol 45.2 57 0.0012 38.9 7.8 93 217-313 140-250 (327)
150 TIGR02100 glgX_debranch glycog 45.2 58 0.0013 43.0 8.3 66 807-872 245-343 (688)
151 PF14587 Glyco_hydr_30_2: O-Gl 45.2 32 0.0007 41.3 5.4 100 812-913 109-223 (384)
152 PRK05286 dihydroorotate dehydr 44.3 1.5E+02 0.0033 35.6 11.1 117 1201-1334 126-246 (344)
153 cd06522 GH25_AtlA-like AtlA is 44.1 1.7E+02 0.0036 32.0 10.6 111 807-943 42-155 (192)
154 COG3867 Arabinogalactan endo-1 44.1 5.2E+02 0.011 30.0 13.9 21 1201-1221 105-125 (403)
155 cd04738 DHOD_2_like Dihydrooro 43.9 2E+02 0.0043 34.4 12.0 118 1201-1334 116-237 (327)
156 PF11921 DUF3439: Domain of un 43.9 13 0.00028 35.3 1.5 14 657-670 26-39 (122)
157 PRK08255 salicylyl-CoA 5-hydro 43.8 94 0.002 41.8 10.2 92 216-311 549-658 (765)
158 cd06592 GH31_glucosidase_KIAA1 43.7 2.1E+02 0.0045 33.8 12.0 34 842-875 134-167 (303)
159 PRK13335 superantigen-like pro 43.7 26 0.00057 40.4 4.1 7 825-831 244-250 (356)
160 cd02801 DUS_like_FMN Dihydrour 42.9 71 0.0015 35.8 7.7 71 817-904 51-123 (231)
161 PF14885 GHL15: Hypothetical g 42.4 32 0.0007 31.7 3.7 44 1221-1265 32-76 (79)
162 PRK13042 superantigen-like pro 42.3 39 0.00084 38.4 5.1 7 825-831 179-185 (291)
163 PRK10785 maltodextrin glucosid 41.8 85 0.0018 40.9 9.0 92 1199-1298 225-362 (598)
164 cd04738 DHOD_2_like Dihydrooro 40.8 2E+02 0.0044 34.3 11.4 95 808-917 116-212 (327)
165 COG4724 Endo-beta-N-acetylgluc 40.8 56 0.0012 38.5 6.2 82 813-902 133-218 (553)
166 PF10566 Glyco_hydro_97: Glyco 40.3 65 0.0014 37.2 6.7 81 1200-1303 73-153 (273)
167 PF07462 MSP1_C: Merozoite sur 40.1 49 0.0011 40.9 5.8 16 926-941 467-482 (574)
168 KOG0260|consensus 39.1 1.8E+02 0.0039 39.5 10.8 10 476-485 1235-1244(1605)
169 PF07462 MSP1_C: Merozoite sur 38.5 52 0.0011 40.7 5.7 9 344-352 149-157 (574)
170 PRK05286 dihydroorotate dehydr 38.2 2.8E+02 0.006 33.4 12.1 117 808-941 126-246 (344)
171 cd02803 OYE_like_FMN_family Ol 37.9 1.1E+02 0.0023 36.5 8.6 133 1200-1336 77-251 (327)
172 PF03427 CBM_19: Carbohydrate 37.1 25 0.00055 30.4 2.1 20 629-648 36-55 (61)
173 TIGR03849 arch_ComA phosphosul 36.9 5.8E+02 0.013 28.9 13.2 50 1201-1263 42-91 (237)
174 PRK01021 lpxB lipid-A-disaccha 36.5 1.2E+02 0.0025 39.1 8.6 106 181-310 240-367 (608)
175 cd02932 OYE_YqiM_FMN Old yello 36.0 1.1E+02 0.0024 36.7 8.2 93 216-312 152-262 (336)
176 PLN02877 alpha-amylase/limit d 35.9 1.6E+02 0.0035 40.0 10.2 66 807-872 466-561 (970)
177 PF00834 Ribul_P_3_epim: Ribul 34.6 1.3E+02 0.0028 33.2 7.7 66 1248-1336 72-137 (201)
178 PF14885 GHL15: Hypothetical g 34.5 51 0.0011 30.4 3.7 43 828-871 32-75 (79)
179 PF00724 Oxidored_FMN: NADH:fl 34.4 3.4E+02 0.0074 32.6 12.1 109 1200-1311 80-227 (341)
180 TIGR00737 nifR3_yhdG putative 34.2 1.6E+02 0.0034 35.0 9.1 79 1210-1308 59-139 (319)
181 cd02940 DHPD_FMN Dihydropyrimi 34.1 2E+02 0.0043 33.8 9.8 91 185-288 88-178 (299)
182 TIGR02403 trehalose_treC alpha 33.8 2.9E+02 0.0062 35.6 11.9 61 1237-1298 168-235 (543)
183 smart00812 Alpha_L_fucos Alpha 33.4 8.8E+02 0.019 29.7 15.3 66 1202-1268 130-205 (384)
184 PRK14706 glycogen branching en 33.3 1.1E+02 0.0023 40.2 7.9 64 212-278 279-349 (639)
185 COG2342 Predicted extracellula 33.0 71 0.0015 36.4 5.3 61 219-284 126-190 (300)
186 PLN02361 alpha-amylase 32.8 1.4E+02 0.003 36.8 8.3 66 1199-1265 75-181 (401)
187 cd06415 GH25_Cpl1-like Cpl-1 l 32.7 4.3E+02 0.0092 28.9 11.5 115 807-943 38-156 (196)
188 PF02065 Melibiase: Melibiase; 32.6 1.3E+02 0.0027 37.0 7.9 69 1235-1307 162-234 (394)
189 COG1902 NemA NADH:flavin oxido 32.5 1.5E+02 0.0033 35.8 8.5 96 217-315 148-262 (363)
190 smart00812 Alpha_L_fucos Alpha 32.5 8E+02 0.017 30.1 14.7 63 811-875 132-205 (384)
191 PLN02411 12-oxophytodienoate r 32.4 1.3E+02 0.0028 37.0 8.0 68 1240-1310 163-241 (391)
192 cd06523 GH25_PlyB-like PlyB is 32.1 1.7E+02 0.0037 31.5 8.1 77 805-902 37-113 (177)
193 PRK12568 glycogen branching en 32.1 1.3E+02 0.0027 39.9 8.2 64 211-278 380-453 (730)
194 PRK11815 tRNA-dihydrouridine s 31.8 91 0.002 37.3 6.5 77 195-284 63-139 (333)
195 cd06591 GH31_xylosidase_XylS X 31.7 1E+02 0.0022 36.7 6.8 66 1202-1268 68-161 (319)
196 PF14488 DUF4434: Domain of un 31.4 4.1E+02 0.0088 28.4 10.6 57 811-873 69-130 (166)
197 PRK10550 tRNA-dihydrouridine s 31.2 92 0.002 36.9 6.3 102 197-311 63-168 (312)
198 PF00834 Ribul_P_3_epim: Ribul 30.9 1.5E+02 0.0033 32.6 7.5 66 855-943 72-137 (201)
199 cd06599 GH31_glycosidase_Aec37 30.8 1.2E+02 0.0027 35.9 7.4 65 1202-1267 75-169 (317)
200 PF04914 DltD_C: DltD C-termin 30.4 1.7E+02 0.0036 29.9 7.1 58 1201-1262 37-95 (130)
201 TIGR01037 pyrD_sub1_fam dihydr 30.3 3.9E+02 0.0083 31.4 11.4 107 809-940 78-189 (300)
202 PF05283 MGC-24: Multi-glycosy 30.3 1.3E+02 0.0027 32.7 6.5 6 641-646 78-83 (186)
203 PRK14582 pgaB outer membrane N 30.2 1.8E+02 0.0038 38.2 9.0 140 844-1000 439-614 (671)
204 cd06591 GH31_xylosidase_XylS X 30.0 1.2E+02 0.0026 36.1 7.1 66 810-875 69-161 (319)
205 TIGR03849 arch_ComA phosphosul 29.7 6.4E+02 0.014 28.6 12.0 49 809-870 43-91 (237)
206 cd06412 GH25_CH-type CH-type ( 29.4 2.3E+02 0.0049 31.1 8.7 18 806-823 38-55 (199)
207 cd02911 arch_FMN Archeal FMN-b 29.2 3E+02 0.0064 31.2 9.7 106 1203-1332 62-171 (233)
208 PF07364 DUF1485: Protein of u 29.2 3.8E+02 0.0082 31.5 10.7 151 1202-1389 47-198 (292)
209 cd04741 DHOD_1A_like Dihydroor 28.8 4.2E+02 0.009 31.1 11.2 87 1201-1311 75-168 (294)
210 cd06416 GH25_Lys1-like Lys-1 i 28.8 1.8E+02 0.0039 31.8 7.8 19 805-823 37-55 (196)
211 TIGR00262 trpA tryptophan synt 28.5 2E+02 0.0043 33.0 8.3 97 183-313 74-172 (256)
212 PF01120 Alpha_L_fucos: Alpha- 28.1 1.9E+02 0.0041 34.8 8.4 81 811-902 142-235 (346)
213 PF10566 Glyco_hydro_97: Glyco 28.1 1.9E+02 0.0041 33.5 7.8 55 808-872 74-128 (273)
214 cd06522 GH25_AtlA-like AtlA is 27.9 2.6E+02 0.0057 30.5 8.8 78 1199-1295 41-121 (192)
215 PF02679 ComA: (2R)-phospho-3- 27.8 7.2E+02 0.016 28.3 12.1 144 1201-1387 55-206 (244)
216 PRK14582 pgaB outer membrane N 27.7 1.3E+02 0.0029 39.3 7.2 140 1237-1393 439-614 (671)
217 TIGR03234 OH-pyruv-isom hydrox 27.5 60 0.0013 37.1 3.9 43 221-284 16-58 (254)
218 PF14488 DUF4434: Domain of un 27.0 5.5E+02 0.012 27.4 10.7 59 1202-1266 67-130 (166)
219 PRK11907 bifunctional 2',3'-cy 26.9 5.6E+02 0.012 34.6 12.9 16 854-869 192-207 (814)
220 cd02911 arch_FMN Archeal FMN-b 26.9 3.5E+02 0.0075 30.6 9.7 85 811-917 63-149 (233)
221 PF08885 GSCFA: GSCFA family; 26.8 98 0.0021 35.4 5.3 56 180-237 151-214 (251)
222 KOG3111|consensus 26.8 1.7E+02 0.0037 31.6 6.5 75 839-943 70-144 (224)
223 PRK14705 glycogen branching en 26.6 1.7E+02 0.0037 41.1 8.3 65 807-871 815-905 (1224)
224 cd06599 GH31_glycosidase_Aec37 26.4 1.6E+02 0.0034 35.1 7.2 32 843-874 138-169 (317)
225 PRK03995 hypothetical protein; 26.3 89 0.0019 36.0 4.8 28 231-270 233-260 (267)
226 TIGR03234 OH-pyruv-isom hydrox 26.1 73 0.0016 36.3 4.3 43 1245-1306 16-58 (254)
227 KOG1643|consensus 25.9 2.6E+02 0.0057 30.4 7.7 64 1200-1273 106-170 (247)
228 COG1523 PulA Type II secretory 25.7 1.6E+02 0.0035 38.6 7.5 66 807-872 265-361 (697)
229 cd06602 GH31_MGAM_SI_GAA This 25.7 1.7E+02 0.0036 35.2 7.3 33 842-874 134-166 (339)
230 PRK07565 dihydroorotate dehydr 25.6 2.8E+02 0.006 33.3 9.2 77 808-904 88-165 (334)
231 TIGR00737 nifR3_yhdG putative 25.6 1.7E+02 0.0036 34.8 7.3 78 817-914 59-138 (319)
232 PF02679 ComA: (2R)-phospho-3- 25.3 4.8E+02 0.01 29.7 10.2 143 809-994 56-206 (244)
233 cd06415 GH25_Cpl1-like Cpl-1 l 25.1 2.8E+02 0.0061 30.3 8.4 79 1200-1294 38-119 (196)
234 PRK10933 trehalose-6-phosphate 24.8 4.8E+02 0.01 33.7 11.6 28 1236-1264 174-201 (551)
235 PF04914 DltD_C: DltD C-termin 24.4 2.5E+02 0.0053 28.7 7.0 54 812-869 41-95 (130)
236 TIGR02456 treS_nterm trehalose 24.3 2.4E+02 0.0052 36.3 8.8 28 1236-1264 171-198 (539)
237 cd04741 DHOD_1A_like Dihydroor 24.2 2.5E+02 0.0054 33.0 8.3 87 808-917 75-167 (294)
238 PRK02506 dihydroorotate dehydr 24.0 4E+02 0.0086 31.6 9.9 87 808-917 78-167 (310)
239 cd06412 GH25_CH-type CH-type ( 24.0 2.5E+02 0.0054 30.8 7.7 18 1199-1216 38-55 (199)
240 cd06594 GH31_glucosidase_YihQ 23.9 1.9E+02 0.0042 34.3 7.3 64 1202-1265 73-165 (317)
241 PRK10550 tRNA-dihydrouridine s 23.7 1.9E+02 0.0042 34.2 7.2 103 1213-1333 62-168 (312)
242 PLN02361 alpha-amylase 23.7 2.6E+02 0.0057 34.4 8.5 30 843-872 152-181 (401)
243 PRK08255 salicylyl-CoA 5-hydro 23.6 2.6E+02 0.0055 37.8 9.2 91 1240-1333 549-658 (765)
244 cd06595 GH31_xylosidase_XylS-l 23.6 2.2E+02 0.0048 33.3 7.7 66 1202-1267 76-160 (292)
245 cd04739 DHOD_like Dihydroorota 23.6 3.2E+02 0.007 32.5 9.2 77 808-904 86-163 (325)
246 cd04739 DHOD_like Dihydroorota 23.5 3.8E+02 0.0081 32.0 9.7 87 1201-1310 86-173 (325)
247 cd06598 GH31_transferase_CtsZ 23.2 2.1E+02 0.0044 34.1 7.4 63 1203-1267 73-165 (317)
248 PRK08005 epimerase; Validated 23.2 2.2E+02 0.0047 31.7 6.9 75 839-943 64-138 (210)
249 PRK07565 dihydroorotate dehydr 23.1 3.1E+02 0.0067 32.8 8.9 107 1201-1333 88-197 (334)
250 PRK14510 putative bifunctional 23.0 2E+02 0.0043 40.8 8.1 66 1199-1265 246-344 (1221)
251 PF04414 tRNA_deacylase: D-ami 22.8 1E+02 0.0022 34.3 4.2 77 182-270 112-207 (213)
252 cd06416 GH25_Lys1-like Lys-1 i 22.8 2.5E+02 0.0054 30.7 7.4 56 1198-1267 37-97 (196)
253 PF00724 Oxidored_FMN: NADH:fl 22.7 2.5E+02 0.0053 33.8 8.0 72 216-290 147-228 (341)
254 COG3867 Arabinogalactan endo-1 22.2 1.3E+03 0.028 26.9 15.0 20 809-828 106-125 (403)
255 cd06594 GH31_glucosidase_YihQ 22.1 2.1E+02 0.0046 34.0 7.2 63 810-872 74-165 (317)
256 cd06597 GH31_transferase_CtsY 21.8 5.1E+02 0.011 31.1 10.4 30 1236-1265 157-186 (340)
257 COG0296 GlgB 1,4-alpha-glucan 21.6 2.2E+02 0.0047 36.9 7.4 66 1199-1264 213-304 (628)
258 PRK13042 superantigen-like pro 21.5 1.6E+02 0.0036 33.6 5.5 10 820-829 162-171 (291)
259 PRK11815 tRNA-dihydrouridine s 21.4 1.7E+02 0.0036 35.1 6.2 69 818-903 62-132 (333)
260 cd06595 GH31_xylosidase_XylS-l 21.3 2.3E+02 0.0049 33.3 7.1 63 810-872 77-158 (292)
261 KOG3111|consensus 21.0 2.4E+02 0.0053 30.5 6.3 75 1232-1336 70-144 (224)
262 cd06602 GH31_MGAM_SI_GAA This 20.8 2.6E+02 0.0056 33.6 7.6 33 1235-1267 134-166 (339)
263 cd06600 GH31_MGAM-like This fa 20.8 2.5E+02 0.0055 33.3 7.5 65 1202-1267 66-161 (317)
264 cd02940 DHPD_FMN Dihydropyrimi 20.7 6E+02 0.013 29.9 10.5 90 809-917 86-178 (299)
265 PLN02495 oxidoreductase, actin 20.4 4.1E+02 0.009 32.5 9.2 92 183-289 100-193 (385)
266 PF05086 Dicty_REP: Dictyostel 20.1 98 0.0021 39.9 3.8 22 429-450 130-151 (911)
267 PRK08318 dihydropyrimidine deh 20.1 5.5E+02 0.012 31.8 10.6 91 1200-1310 84-178 (420)
268 cd06593 GH31_xylosidase_YicI Y 20.0 2.6E+02 0.0057 32.9 7.4 63 1202-1265 68-158 (308)
No 1
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=1.8e-69 Score=652.78 Aligned_cols=360 Identities=30% Similarity=0.553 Sum_probs=312.7
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCC--cceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEE
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQI--CTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLA 202 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~l--CTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvlls 202 (1490)
||||||++|++||++.++|.|++||+.+ ||||||+|++|++++..+...+++.|...+.+++|.+||++||+||||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 6899999999999999999999999976 99999999999998888888887777777889999999999999999999
Q ss_pred ecc-----------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCC-------------------Ccc
Q psy10300 203 VKS-----------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDED-------------------DDD 252 (1490)
Q Consensus 203 vGg-----------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~-------------------~~~ 252 (1490)
||| .|+.+++++++|++||+++++||++|+|||||||||||+..+.. ..+
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 998 18999999999999999999999999999999999999864310 001
Q ss_pred ccchhhhHHHHHHHHHHHHHHHhhcCcEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccC
Q psy10300 253 LESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVN 332 (1490)
Q Consensus 253 ~~~~~~d~~~f~~ll~eLr~~~~~~~~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~sp 332 (1490)
+...++|+++|+.||+|||++|++.+++|+++|++... ....||+++|+++|||||||+||+|+.|.. +...+|+||
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~-~~~~~d~~~l~~~vD~inlMtYD~~g~~~~--~~~~~~~ap 237 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVN-STWYFDVPAIANNVDFVNLATFDFLTPERN--PEEADYTAP 237 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCch-hccccCHHHHhhcCCEEEEEEecccCCCCC--CCccCcCCc
Confidence 12357899999999999999999999999999976533 234699999999999999999999999832 222379999
Q ss_pred CcccccccccccHHHHHHHHHHcCCCCCcEEEeeeeeeeeEEecCCCC-CC--CCcccccCCCCCCccCCCccccHHHHH
Q psy10300 333 IQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSE-YG--LGATVKGPGTEGKYTQMPGYLAFFEVC 409 (1490)
Q Consensus 333 l~~~~~~~~~~~v~~~v~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~-~~--~g~p~~g~g~~g~~t~~~g~lsY~eic 409 (1490)
|+.........|++.+|++|++.|+|++|||||||||||.|++.+... .+ .++++.||+.+|++++++|+++|.|||
T Consensus 238 L~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~ 317 (413)
T cd02873 238 IYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEIC 317 (413)
T ss_pred cCCCccccccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHH
Confidence 997654444679999999999999999999999999999999987542 23 235788999999999999999999999
Q ss_pred HHhcCC--------CcceeeCCC-C-CceeEe-------CCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCCCC
Q psy10300 410 NKFKDK--------TWRHFTDSN-G-EPFMVK-------KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF 472 (1490)
Q Consensus 410 ~~~~~~--------~~~~~~D~~-~-~py~~~-------~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~g~ 472 (1490)
++++.. .|+.++|++ + .+|+|+ .++||+|||++||+.|++||+++||||+|+|++++|||+|.
T Consensus 318 ~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~~g~ 397 (413)
T cd02873 318 SKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQ 397 (413)
T ss_pred HhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCC
Confidence 987653 356778886 3 599984 25799999999999999999999999999999999999999
Q ss_pred CC-CCChHHHHHHHhc
Q psy10300 473 CG-QKYPLLSAVVSNL 487 (1490)
Q Consensus 473 Cg-~~~PLl~~i~~~l 487 (1490)
|| ..||||++|+..|
T Consensus 398 c~~~~~pll~~i~~~~ 413 (413)
T cd02873 398 CTGDKFPILRSAKYRL 413 (413)
T ss_pred cCCCCChHHHHHHhhC
Confidence 95 5899999999764
No 2
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=9.5e-68 Score=636.05 Aligned_cols=349 Identities=35% Similarity=0.681 Sum_probs=321.9
Q ss_pred EEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEecc
Q psy10300 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKS 205 (1490)
Q Consensus 126 vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvGg 205 (1490)
|||||++|+.||++.++|.+++||.++||||||+|++++.++ .+...+++.|.....+++|..||++||++||||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g-~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDG-NIIILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCC-CEEecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcC
Confidence 689999999999999999999999999999999999999864 4556677777778899999999999999999999998
Q ss_pred ------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhc--
Q psy10300 206 ------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRN-- 277 (1490)
Q Consensus 206 ------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~-- 277 (1490)
.|+.++++++.|++||+++++||++|+|||||||||||...+ +.++|+++|+.||++||++|++.
T Consensus 80 ~~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~-------~~~~d~~~~~~ll~~lr~~l~~~~~ 152 (362)
T cd02872 80 WNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRG-------GPPEDKENFVTLLKELREAFEPEAP 152 (362)
T ss_pred CCCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCC-------CCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 489999999999999999999999999999999999998642 45789999999999999999998
Q ss_pred CcEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccc---cccccHHHHHHHHHH
Q psy10300 278 NYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTI---ANFNNIESAVYNWIK 354 (1490)
Q Consensus 278 ~~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~---~~~~~v~~~v~~~~~ 354 (1490)
+++|+++||+........||+++|.++||+|+||+||+|+.| ...+ |++|||+..... ....+++.+|++|++
T Consensus 153 ~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~-~~~~---g~~spl~~~~~~~~~~~~~~v~~~v~~~~~ 228 (362)
T cd02872 153 RLLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSW-EGVT---GHNSPLYAGSADTGDQKYLNVDYAIKYWLS 228 (362)
T ss_pred CeEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCC-CCCC---CCCCCCCCCCCCccccccccHHHHHHHHHH
Confidence 899999999876555678999999999999999999999999 4455 899999986443 235789999999999
Q ss_pred cCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CCceeEeCC
Q psy10300 355 KGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GEPFMVKKD 433 (1490)
Q Consensus 355 ~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~py~~~~~ 433 (1490)
.|+|++||+|||||||+.|++.+..++.+|+|+.|+|.+|.++.++|+++|.|||+++ +.+|+..||+. ++||+++++
T Consensus 229 ~gvp~~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~ 307 (362)
T cd02872 229 KGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGN 307 (362)
T ss_pred cCCCHHHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECC
Confidence 9999999999999999999999888889999999999999999999999999999988 77899989888 889999999
Q ss_pred eEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCCCCCCC-CChHHHHHHHhc
Q psy10300 434 EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQ-KYPLLSAVVSNL 487 (1490)
Q Consensus 434 ~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~g~Cg~-~~PLl~~i~~~l 487 (1490)
+||+|||++||+.|++||+++||||+|+|+|++|||+|.||. +||||++|+++|
T Consensus 308 ~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 308 QWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred EEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 999999999999999999999999999999999999999998 999999999875
No 3
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=3.2e-59 Score=563.87 Aligned_cols=345 Identities=33% Similarity=0.663 Sum_probs=292.0
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCC--ccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcC--CcEEEEE
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDL--CTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLA 1219 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~--~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--g~Kvlls 1219 (1490)
+|||||++|+.||.+.++|.+++|+..+ ||||+|+|+.++.++..+...+.+.+.....++.+..+|++ ++|||||
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 5899999999999999999999999865 99999999999998777766666666655667778888764 8999999
Q ss_pred EcCcCCCC----CcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCC---------------------C
Q psy10300 1220 IGGWNDSA----GNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVD---------------------C 1274 (1490)
Q Consensus 1220 iGG~~~s~----~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~---------------------~ 1274 (1490)
||||..+. +..|+.|+++++.|++||+++++||++|+|||||||||||...... .
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 99998642 2579999999999999999999999999999999999999743210 0
Q ss_pred CCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCC--CCCCCCCCC
Q psy10300 1275 KQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDK--KTGHVAPMY 1352 (1490)
Q Consensus 1275 ~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~--~~g~~spl~ 1352 (1490)
....++|+++|+.||+|||++|++.+++|++++++.... ...||+++|.++|||||||+|||||.|.. .+||++||+
T Consensus 161 ~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~ 239 (413)
T cd02873 161 DEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIY 239 (413)
T ss_pred CCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccC
Confidence 112467999999999999999999999999998764322 23589999999999999999999999865 589999999
Q ss_pred CCCCCCCCCcCHHHHHHHHHHcCCCCCcEEEEeeccceeeeeccCCC-CCC--CCccccCCCCCcccccCccchHHHHHH
Q psy10300 1353 ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNK-NGL--NSQTYGGAEAGENTRARGFLAYYEICD 1429 (1490)
Q Consensus 1353 ~~~~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~~~~~~~-~~~--~~~~~g~~~~g~~~~~~g~l~y~ei~~ 1429 (1490)
..... ...+|++.+|++|++.|+|++|||||||||||.|++++... .+. .+++.|++.+|.++...|.++|.|||+
T Consensus 240 ~~~~~-~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~ 318 (413)
T cd02873 240 ELYER-NPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICS 318 (413)
T ss_pred CCccc-cccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHHH
Confidence 75432 34579999999999999999999999999999999986542 222 245677788899999999999999999
Q ss_pred hhhcC--------CcEEEEcCCCceeeEEee-------CCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q psy10300 1430 KIQKD--------GWVVVRDRKRRIGPYAFK-------GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490 (1490)
Q Consensus 1430 ~~~~~--------~~~~~~D~~~~~~~y~~~-------~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD~ 1490 (1490)
.+... .|...||+..+..+|.|. .++||+|||++||+.|++||+++||||+|+|+|++|||
T Consensus 319 ~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~ 394 (413)
T cd02873 319 KLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDF 394 (413)
T ss_pred hhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 87653 356778887665688884 24799999999999999999999999999999999997
No 4
>KOG2806|consensus
Probab=100.00 E-value=4.2e-60 Score=572.10 Aligned_cols=353 Identities=25% Similarity=0.408 Sum_probs=308.1
Q ss_pred CCCCCCeEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCce
Q psy10300 119 QPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELK 198 (1490)
Q Consensus 119 ~~~~~~~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lK 198 (1490)
+....++++||+..|++||.+.+.+.++++++.+|||+||+|+.++.++..+...+. ..+.+++....+|++||+||
T Consensus 47 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~---~~~~f~~~~~~~k~~n~~vK 123 (432)
T KOG2806|consen 47 EEFTAQNTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR---TMNRFSSYNQTAKSSNPTVK 123 (432)
T ss_pred ccccCccccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch---hhhhhHHHHHHHHhhCCCce
Confidence 344557889999999999999889999999999999999999999998877766553 23467888889999999999
Q ss_pred EEEEecc------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHH
Q psy10300 199 VYLAVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSS 272 (1490)
Q Consensus 199 vllsvGg------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~ 272 (1490)
+|||||| .|+.|++++..|+.||++|++||++|+|||||||||||. . .+.|+.+|..||+|||+
T Consensus 124 ~llSIGG~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~-~---------~~~d~~~~~~~i~elr~ 193 (432)
T KOG2806|consen 124 VMISIGGSHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPL-F---------TPSDQLEFSRFIQELRS 193 (432)
T ss_pred EEEEecCCCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCC-C---------chhhHHHHHHHHHHHHH
Confidence 9999998 699999999999999999999999999999999999996 1 14589999999999999
Q ss_pred HHhhcC-------cEEEEEec-ccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCccccc-ccccc
Q psy10300 273 TLRRNN-------YQLTLTSP-GVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTST-IANFN 343 (1490)
Q Consensus 273 ~~~~~~-------~~ls~~v~-~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~-~~~~~ 343 (1490)
+|.++. ++|+.+|. +.......+||+++|.+++||||||+|||||+|+.. ...|++||||.+.. ....+
T Consensus 194 ~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~--~~tGp~aPl~~~~~~~~~~~ 271 (432)
T KOG2806|consen 194 AFARETLKSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLP--CFTGPPSPLYKGPSMTNPKM 271 (432)
T ss_pred HHHHHhhccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCC--CcCCCCcccCCCCcccccCc
Confidence 998763 23444444 434357899999999999999999999999999432 23389999999864 45578
Q ss_pred cHHHHHHHHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCC-ccCCCccccHHHHHHHhcCCCcceeeC
Q psy10300 344 NIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGK-YTQMPGYLAFFEVCNKFKDKTWRHFTD 422 (1490)
Q Consensus 344 ~v~~~v~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~-~t~~~g~lsY~eic~~~~~~~~~~~~D 422 (1490)
||+.+|++|+++|.+++||+||||||||.|++.+.... +++++.+++.++. .+...|+++|+|||+++.+.+ ...||
T Consensus 272 Nvd~~~ky~~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d 349 (432)
T KOG2806|consen 272 NVDSLLKYWTEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWD 349 (432)
T ss_pred chhhhHHHHhhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-Cceec
Confidence 99999999999999999999999999999999998776 8889999999888 788999999999999776655 55566
Q ss_pred CC-CCceeEe--CCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCCCC-CC--CCChHHHHHHHhcC
Q psy10300 423 SN-GEPFMVK--KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF-CG--QKYPLLSAVVSNLQ 488 (1490)
Q Consensus 423 ~~-~~py~~~--~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~g~-Cg--~~~PLl~~i~~~l~ 488 (1490)
+. ++||+|+ +++||+|||++||++|++||++++|||||||+||+|||+|. |+ ..+|++.++.+.+.
T Consensus 350 ~~~~~~Y~~~~~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~~ 421 (432)
T KOG2806|consen 350 EETQTPYLYNIPYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKNH 421 (432)
T ss_pred CCceeeeEEecCCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeecccccc
Confidence 66 7799999 99999999999999999999999999999999999999997 55 58999998887763
No 5
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.1e-58 Score=557.50 Aligned_cols=337 Identities=51% Similarity=0.990 Sum_probs=304.6
Q ss_pred EEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcC--CcEEEEEEcC
Q psy10300 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGG 1222 (1490)
Q Consensus 1145 vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--g~KvllsiGG 1222 (1490)
|||||++|+.||++.+.|.+++|+.++||||+|+|+.++.++.+.. .+.+.+....+++.+..+|++ ++||||||||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~-~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG 79 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIII-LDEWNDIDLGLYERFNALKEKNPNLKTLLAIGG 79 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEe-cCchhhhhhhHHHHHHHHHhhCCCceEEEEEcC
Confidence 6899999999999888999999999999999999999999875543 455555667778888888875 7999999999
Q ss_pred cCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCC--C
Q psy10300 1223 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH--D 1300 (1490)
Q Consensus 1223 ~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~--~ 1300 (1490)
|..+. ..|+.++++++.|++||++|++++++|+|||||||||||... ...++++++|+.||++||++|++. +
T Consensus 80 ~~~~~-~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~-----~~~~~d~~~~~~ll~~lr~~l~~~~~~ 153 (362)
T cd02872 80 WNFGS-AKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQR-----GGPPEDKENFVTLLKELREAFEPEAPR 153 (362)
T ss_pred CCCCc-chhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccC-----CCCHHHHHHHHHHHHHHHHHHHhhCcC
Confidence 98653 579999999999999999999999999999999999999732 245689999999999999999987 8
Q ss_pred cEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCC--CCCcCHHHHHHHHHHcCCCC
Q psy10300 1301 LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWVSHGADR 1378 (1490)
Q Consensus 1301 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~--~~~~~i~~~v~~~~~~g~p~ 1378 (1490)
++|++++++.......+||+++|.++||||+||+||+|+.|+..+||++||++.+.+. ....+++.+|++|++.|+|+
T Consensus 154 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~ 233 (362)
T cd02872 154 LLLTAAVSAGKETIDAAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPP 233 (362)
T ss_pred eEEEEEecCChHHHhhcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCH
Confidence 9999999987766667899999999999999999999999999999999999866543 24578999999999999999
Q ss_pred CcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeCCEEEE
Q psy10300 1379 KKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVG 1458 (1490)
Q Consensus 1379 ~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~~~~~v~ 1458 (1490)
+||+|||||||+.|++.+..+++++++..|.+.+|..+...|.++|.|||+.+ +.+|...||+... .+|.|++++||+
T Consensus 234 ~KlvlGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~-~~y~~~~~~~v~ 311 (362)
T cd02872 234 EKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQK-VPYAYKGNQWVG 311 (362)
T ss_pred HHeEeccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcc-eeEEEECCEEEE
Confidence 99999999999999999888888999998888888888899999999999988 8899999999874 588899999999
Q ss_pred EcCHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q psy10300 1459 FDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490 (1490)
Q Consensus 1459 ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD~ 1490 (1490)
|||++||+.|++||+++||||+|+|+|++|||
T Consensus 312 ydd~~Si~~K~~~~~~~~lgGv~iW~l~~DD~ 343 (362)
T cd02872 312 YDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343 (362)
T ss_pred eCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 99999999999999999999999999999997
No 6
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=4.7e-58 Score=543.46 Aligned_cols=324 Identities=20% Similarity=0.341 Sum_probs=271.8
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEec
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVK 204 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvG 204 (1490)
|+||||++|+.+|++. +|.|++||..+||||||+|+.+++++ .+...+ ....+++|..||+ ||||||||
T Consensus 1 ~~v~Y~~~w~~~r~~~-~~~~~~i~~~~~THi~yaf~~~~~~g-~l~~~~-----~~~~~~~~~~~k~----lkvllsiG 69 (345)
T cd02878 1 KNIAYFEAYNLDRPCL-NMDVTQIDTSKYTHIHFAFANITSDF-SVDVSS-----VQEQFSDFKKLKG----VKKILSFG 69 (345)
T ss_pred CEEEEEChhhcCCCCC-CCCHhHCCcccCCEEEEEeEeecCCC-eEeecc-----cHHHHHHHHhhcC----cEEEEEEe
Confidence 6899999999999974 89999999999999999999999764 333221 2345677777775 99999999
Q ss_pred c-c----------hhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHH
Q psy10300 205 S-N----------FVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSST 273 (1490)
Q Consensus 205 g-~----------fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~ 273 (1490)
| . |+.++ ++++|++||+++++||++|+|||||||||||...+. ..+..+.++|+++|+.||+|||++
T Consensus 70 G~~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~-~~~~~~~~~d~~n~~~ll~elr~~ 147 (345)
T cd02878 70 GWDFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDI-PGIPAGDPDDGKNYLEFLKLLKSK 147 (345)
T ss_pred CCCCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCC-CCCCCCChHHHHHHHHHHHHHHHH
Confidence 8 1 77787 999999999999999999999999999999986431 001124578999999999999999
Q ss_pred HhhcCcEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccc----cccccccHHHHH
Q psy10300 274 LRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTS----TIANFNNIESAV 349 (1490)
Q Consensus 274 ~~~~~~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~----~~~~~~~v~~~v 349 (1490)
|++ +++|++++|+... ....||+++|+++|||||||+||+||.|+ ... .|++|..... ......+++.+|
T Consensus 148 l~~-~~~ls~a~~~~~~-~~~~yd~~~l~~~vD~i~vMtYD~~g~w~-~~~---~~~~p~~p~~~~~~~~~~~~~~~~~v 221 (345)
T cd02878 148 LPS-GKSLSIAAPASYW-YLKGFPIKDMAKYVDYIVYMTYDLHGQWD-YGN---KWASPGCPAGNCLRSHVNKTETLDAL 221 (345)
T ss_pred hCc-CcEEEEEcCCChh-hhcCCcHHHHHhhCcEEEEEeecccCCcC-ccC---CcCCCCCCcccccccCCCchhHHHHH
Confidence 987 7899999987654 34579999999999999999999999994 333 4555522110 111234689999
Q ss_pred HHHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCC---CCCCccCCCccccHHHHHHHh-cCCCcceeeCCC-
Q psy10300 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPG---TEGKYTQMPGYLAFFEVCNKF-KDKTWRHFTDSN- 424 (1490)
Q Consensus 350 ~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g---~~g~~t~~~g~lsY~eic~~~-~~~~~~~~~D~~- 424 (1490)
++|++.|+|++||+||||||||.|+|.++.++++++|+.|+| .+|+++...|+++|+|||..+ +..+|..+||+.
T Consensus 222 ~~~~~~Gvp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~~ 301 (345)
T cd02878 222 SMITKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTDS 301 (345)
T ss_pred HHHHHcCCCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecCC
Confidence 999999999999999999999999999999999999999986 467788888889999999854 446799999988
Q ss_pred CCcee-EeCCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCC
Q psy10300 425 GEPFM-VKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467 (1490)
Q Consensus 425 ~~py~-~~~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~D 467 (1490)
++||+ +.++|||+|||++||+.|++||+++||||+|+|+||+|
T Consensus 302 ~~~y~~~~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 302 DSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CccEEEEcCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 78987 56789999999999999999999999999999999987
No 7
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.7e-56 Score=530.23 Aligned_cols=333 Identities=29% Similarity=0.456 Sum_probs=275.7
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEcCc
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1223 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiGG~ 1223 (1490)
|+||||++|+.+|++ ..|.+++|+.++||||+|+|+.++.++.+... + .... +..+.++| ++|||||||||
T Consensus 1 ~~v~Y~~~w~~~r~~-~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~-~----~~~~-~~~~~~~k--~lkvllsiGG~ 71 (345)
T cd02878 1 KNIAYFEAYNLDRPC-LNMDVTQIDTSKYTHIHFAFANITSDFSVDVS-S----VQEQ-FSDFKKLK--GVKKILSFGGW 71 (345)
T ss_pred CEEEEEChhhcCCCC-CCCCHhHCCcccCCEEEEEeEeecCCCeEeec-c----cHHH-HHHHHhhc--CcEEEEEEeCC
Confidence 589999999999886 58999999999999999999999988755432 1 1222 33444444 49999999999
Q ss_pred CCCCC----cchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCC-CCCCCccchhhHHHHHHHHHHhcCC
Q psy10300 1224 NDSAG----NKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVD-CKQGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1224 ~~s~~----~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~-~~~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
..+.+ ..|+.++ ++++|++||+++++++++|+|||||||||||...+.. .....++|+++|+.||++||++|++
T Consensus 72 ~~s~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~~~ll~elr~~l~~ 150 (345)
T cd02878 72 DFSTSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKLPS 150 (345)
T ss_pred CCCCCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCc
Confidence 87643 2488888 9999999999999999999999999999999853221 1123567999999999999999976
Q ss_pred CCcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCC---CCCcCHHHHHHHHHHcC
Q psy10300 1299 HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT---TPTFNANYSLHYWVSHG 1375 (1490)
Q Consensus 1299 ~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~---~~~~~i~~~v~~~~~~g 1375 (1490)
+++|++++++..... ..||+++|.++|||||||+||+||.|+..+++++|........ ....+++.+|++|+++|
T Consensus 151 -~~~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~G 228 (345)
T cd02878 151 -GKSLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAG 228 (345)
T ss_pred -CcEEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcC
Confidence 789999998875543 5799999999999999999999999998877777743221111 12235889999999999
Q ss_pred CCCCcEEEEeeccceeeeeccCCCCCCCCccccCC---CCCcccccCccchHHHHHHhh-hcCCcEEEEcCCCceeeEEe
Q psy10300 1376 ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGA---EAGENTRARGFLAYYEICDKI-QKDGWVVVRDRKRRIGPYAF 1451 (1490)
Q Consensus 1376 ~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~---~~g~~~~~~g~l~y~ei~~~~-~~~~~~~~~D~~~~~~~y~~ 1451 (1490)
+|++||+||||||||.|+++++.++++++++.|++ ..|..+...|.+.|.|||..+ ...+|...||+.....++.|
T Consensus 229 vp~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~~~~~y~~~ 308 (345)
T cd02878 229 VPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTDSDSDILVY 308 (345)
T ss_pred CCHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecCCCccEEEE
Confidence 99999999999999999999999999999988765 355666677788889999865 45789999999887655568
Q ss_pred eCCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q psy10300 1452 KGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488 (1490)
Q Consensus 1452 ~~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~D 1488 (1490)
.+++||+|||++||+.|++||+++||||+|+|+||+|
T Consensus 309 ~~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 309 DDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred cCCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 8889999999999999999999999999999999997
No 8
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.1e-56 Score=506.17 Aligned_cols=344 Identities=31% Similarity=0.615 Sum_probs=276.8
Q ss_pred CCCCcEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEec------------------cCCCcchhhH
Q psy10300 1139 TKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIK------------------PHDTWADLDN 1200 (1490)
Q Consensus 1139 ~~~~~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~------------------~~~~~~~~~~ 1200 (1490)
....+||||||++|+.|.+ ..|.+.+|+++++|||+|+|+.|..++..+. ..++|.+...
T Consensus 34 ~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~ 111 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLK 111 (441)
T ss_pred CCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeecccccccc
Confidence 3457899999999998865 5899999999999999999999998874211 1345555344
Q ss_pred HHHHHHHHHhcC--CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCC
Q psy10300 1201 KFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGP 1278 (1490)
Q Consensus 1201 ~~~~~i~~~k~~--g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~ 1278 (1490)
..+..+..+|++ ++|+++|||||..| ..|+.|+.+.+.|++|++++++||++|+|||||||||||+..+..++...
T Consensus 112 G~~~~L~~lk~~~~d~k~l~SIGGWs~S--~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~ 189 (441)
T COG3325 112 GHFGALFDLKATYPDLKTLISIGGWSDS--GGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGR 189 (441)
T ss_pred chHHHHHHHhhhCCCceEEEeecccccC--CCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCC
Confidence 556778888876 57999999999998 46999999999999999999999999999999999999999888888889
Q ss_pred ccchhhHHHHHHHHHHhcCC------CCcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCC
Q psy10300 1279 ASDKQGFADLIKELRAAFNP------HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMY 1352 (1490)
Q Consensus 1279 ~~d~~~~~~ll~eLr~~l~~------~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~ 1352 (1490)
+.++++|+.||++||++|.. +.+.||+|.|.....+. +.+..++.++|||||||||||||.|...+|||+|||
T Consensus 190 ~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly 268 (441)
T COG3325 190 PKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALY 268 (441)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeecccccccccccccccc
Confidence 99999999999999999985 35999999998887775 889999999999999999999999999999999999
Q ss_pred CCCCCCCC---CcCHH------HHHHHHHHcCCCCCcEEEEeeccceeeeeccCCCCC----CCCcccc-CCCCCccccc
Q psy10300 1353 ALPNDTTP---TFNAN------YSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNG----LNSQTYG-GAEAGENTRA 1418 (1490)
Q Consensus 1353 ~~~~~~~~---~~~i~------~~v~~~~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~----~~~~~~g-~~~~g~~~~~ 1418 (1490)
..+.++.. .+.++ ..++.....++||+|||||+|||||+|..++....+ .....-. ..+.|.....
T Consensus 269 ~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~ 348 (441)
T COG3325 269 GTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAG 348 (441)
T ss_pred cCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCccccc
Confidence 76665432 12222 345555567789999999999999999988765532 1111111 1122222111
Q ss_pred CccchH---HHH-HHhhhcCCcEEEEcCCCceeeEEee--CCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q psy10300 1419 RGFLAY---YEI-CDKIQKDGWVVVRDRKRRIGPYAFK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488 (1490)
Q Consensus 1419 ~g~l~y---~ei-~~~~~~~~~~~~~D~~~~~~~y~~~--~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~D 1488 (1490)
.+.-.| +.+ -+....++|...||++.. .||.|+ .+.||+|||++||+.|.+||+++||||+|+|++++|
T Consensus 349 n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~-apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD 423 (441)
T COG3325 349 NGDKDYGKAYDLDANNAGKNGYERYWDDVAK-APYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423 (441)
T ss_pred ccCccchhhccccccccCCCCeeEecccccc-cceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC
Confidence 121122 122 234557889999999874 699996 468999999999999999999999999999999998
No 9
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=5.2e-56 Score=529.34 Aligned_cols=320 Identities=30% Similarity=0.569 Sum_probs=285.3
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEec
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVK 204 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvG 204 (1490)
||||||++|+.+| ..|.+++|+.++||||||+|+.+++++ .+...++..++ ..++.+..||++||++|||++||
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g-~~~~~~~~~~~--~~~~~~~~l~~~~~~~kvl~svg 74 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDG-TVTIGDEWADI--GNFGQLKALKKKNPGLKVLLSIG 74 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCC-CEeeCCcchhh--hhHHHHHHHHHhCCCCEEEEEEe
Confidence 6899999999776 379999999999999999999999854 45444444442 45778999999999999999999
Q ss_pred c-----chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhh---
Q psy10300 205 S-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRR--- 276 (1490)
Q Consensus 205 g-----~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~--- 276 (1490)
| .|+.++.++..|++||++++++|++|+|||||||||+|.... .|+++|+.||++||++|++
T Consensus 75 g~~~s~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~~----------~d~~~~~~ll~~lr~~l~~~~~ 144 (334)
T smart00636 75 GWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGARG----------DDRENYTALLKELREALDKEGA 144 (334)
T ss_pred CCCCCcchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCCc----------cHHHHHHHHHHHHHHHHHHhcc
Confidence 8 589999999999999999999999999999999999997531 4788999999999999996
Q ss_pred --cCcEEEEEecccccccccccC-hhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHHHH
Q psy10300 277 --NNYQLTLTSPGVIDRKTSLVD-ISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWI 353 (1490)
Q Consensus 277 --~~~~ls~~v~~~~~~~~~~yd-~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~~ 353 (1490)
++++|++++++........|| +++|.+++|||+||+||+|++|+ ..+ |++|||+.........+++.+|++|+
T Consensus 145 ~~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~-~~~---g~~spl~~~~~~~~~~~v~~~v~~~~ 220 (334)
T smart00636 145 EGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWS-NPT---GHNAPLYAGPGDPEKYNVDYAVKYYL 220 (334)
T ss_pred cCCceEEEEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCC-CCC---CCCCcCCCCCCCCCCccHHHHHHHHH
Confidence 489999999987654555689 69999999999999999999993 345 89999998654434679999999999
Q ss_pred HcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CCceeEe-
Q psy10300 354 KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GEPFMVK- 431 (1490)
Q Consensus 354 ~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~py~~~- 431 (1490)
++|+|++||+|||||||+.|++.+....++++|+.|++.+|+++.++|.++|.|||+.+ +|...||+. ++||+|+
T Consensus 221 ~~gvp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~ 297 (334)
T smart00636 221 CKGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNP 297 (334)
T ss_pred HcCCCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEEC
Confidence 99999999999999999999999988889999999999999999999999999999976 788899988 7899997
Q ss_pred C-CeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCC
Q psy10300 432 K-DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467 (1490)
Q Consensus 432 ~-~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~D 467 (1490)
+ .+||+|||++||+.|++||+++||||||+|+|++|
T Consensus 298 ~~~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 298 GTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 4 38999999999999999999999999999999987
No 10
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.8e-55 Score=511.15 Aligned_cols=277 Identities=22% Similarity=0.400 Sum_probs=241.8
Q ss_pred CeEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHH-hhhhhcCCCceEEEE
Q psy10300 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSF-LGLKEANPELKVYLA 202 (1490)
Q Consensus 124 ~~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~-~~LK~~np~lKvlls 202 (1490)
-+++|||.+|+ ++|.|++||+.+||||||+|+.+++++..+...+. ....+..| ..||++||+||||||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~----~~~~~~~~~~~~k~~~~~lkvlis 72 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPS----DESEFSTFTETVKRKNPSVKTLLS 72 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccc----cHHHHHHHHHHHHHhCCCCeEEEE
Confidence 36789999998 47999999999999999999999987765554331 12234444 478999999999999
Q ss_pred ecc------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhh
Q psy10300 203 VKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRR 276 (1490)
Q Consensus 203 vGg------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~ 276 (1490)
||| .|+.|++++++|++||+++++||++|+|||||||||||.. ++|+++|+.||+|||++|+.
T Consensus 73 iGG~~~~s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~-----------~~d~~n~~~ll~elr~~l~~ 141 (299)
T cd02879 73 IGGGGSDSSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSS-----------QVEMENFGKLLEEWRAAVKD 141 (299)
T ss_pred EeCCCCCCchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCC-----------hhHHHHHHHHHHHHHHHHHH
Confidence 998 4999999999999999999999999999999999999963 45899999999999999983
Q ss_pred -------cCcEEEEEecccccc----cccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccH
Q psy10300 277 -------NNYQLTLTSPGVIDR----KTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNI 345 (1490)
Q Consensus 277 -------~~~~ls~~v~~~~~~----~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v 345 (1490)
.+++|++++++.... ....||+++|+++||||+||+||+||+|+...+ +++||||... ...++
T Consensus 142 ~~~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~---~~~a~l~~~~---~~~~~ 215 (299)
T cd02879 142 EARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTT---GPAAALYDPN---SNVST 215 (299)
T ss_pred HhhccCCCcEEEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCC---CCCCcCCCCC---CCCCH
Confidence 469999999866543 356899999999999999999999999954445 7999998653 24789
Q ss_pred HHHHHHHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-
Q psy10300 346 ESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN- 424 (1490)
Q Consensus 346 ~~~v~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~- 424 (1490)
+.+|++|++.|+|++|||||||||||.|++ ||+.
T Consensus 216 ~~~v~~~~~~g~p~~KlvlGvp~YGr~~~~---------------------------------------------~D~~~ 250 (299)
T cd02879 216 DYGIKSWIKAGVPAKKLVLGLPLYGRAWTL---------------------------------------------YDTTT 250 (299)
T ss_pred HHHHHHHHHcCCCHHHEEEEeccccccccc---------------------------------------------cCCCc
Confidence 999999999999999999999999999985 4444
Q ss_pred CCceeEeCCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCCCC
Q psy10300 425 GEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF 472 (1490)
Q Consensus 425 ~~py~~~~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~g~ 472 (1490)
+++|++++++||+|||++||+.|++||+++||||+|+|+|++||+++.
T Consensus 251 ~~~y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~~~ 298 (299)
T cd02879 251 VSSYVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDNNWL 298 (299)
T ss_pred ceEEEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCcccc
Confidence 679999999999999999999999999999999999999999998763
No 11
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=3.5e-55 Score=516.29 Aligned_cols=291 Identities=25% Similarity=0.512 Sum_probs=253.8
Q ss_pred EEEEecCcccccCCCCCcccc-CCCCCCcceeeeeeeEEcCCCCccccCCcc---------------hhhhhhhhHHHhh
Q psy10300 126 VVCYVEAKSAYRHRPATFNVK-NVIPQICTHVIYAYAAIDPVSRALIPEDLE---------------YDVIKGGYKSFLG 189 (1490)
Q Consensus 126 vvCy~~~~~~~r~~~~~f~~~-~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~---------------~d~~~~~~~~~~~ 189 (1490)
|||||++|+.||++ +.+. +||+.+||||||+|++|++++..+...+.+ .+...+.++++..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 68999999999975 4556 799999999999999999987655543321 2234578899999
Q ss_pred hhhcCCCceEEEEecc-----chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHH
Q psy10300 190 LKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFS 264 (1490)
Q Consensus 190 LK~~np~lKvllsvGg-----~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~ 264 (1490)
||++||++|||+|||| .|+.++++++.|++||+++++||++|+|||||||||||...+. .+..+.++|+++|+
T Consensus 78 lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~--~~~~~~~~d~~~~~ 155 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGA--PGNVARPEDKENFT 155 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCC--CCCCCChhHHHHHH
Confidence 9999999999999998 6999999999999999999999999999999999999986532 11234578999999
Q ss_pred HHHHHHHHHHhhc------CcEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCccccc
Q psy10300 265 TFIQELSSTLRRN------NYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTST 338 (1490)
Q Consensus 265 ~ll~eLr~~~~~~------~~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~ 338 (1490)
.||++||++|++. +++|++++|+.... ...+|+++|+++|||||||+||+|++| ...+ ||+||||....
T Consensus 156 ~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~-~~~~~~~~l~~~vD~vnlMtYD~~g~w-~~~~---g~~spL~~~~~ 230 (322)
T cd06548 156 LLLKELREALDALGAETGRKYLLTIAAPAGPDK-LDKLEVAEIAKYLDFINLMTYDFHGAW-SNTT---GHHSNLYASPA 230 (322)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEccCCHHH-HhcCCHHHHhhcCCEEEEEEeeccCCC-CCCC---CCCCCCCCCCC
Confidence 9999999999885 49999999987653 346889999999999999999999999 3555 89999998643
Q ss_pred c-cccccHHHHHHHHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCc
Q psy10300 339 I-ANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTW 417 (1490)
Q Consensus 339 ~-~~~~~v~~~v~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~ 417 (1490)
. ....+++.+|++|++.|+|++||+||||||||.|++ |
T Consensus 231 ~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------------~ 269 (322)
T cd06548 231 DPPGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------------Y 269 (322)
T ss_pred CCCCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------------c
Confidence 2 236799999999999999999999999999999985 6
Q ss_pred ceeeCCC-CCceeEeC--CeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCC
Q psy10300 418 RHFTDSN-GEPFMVKK--DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467 (1490)
Q Consensus 418 ~~~~D~~-~~py~~~~--~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~D 467 (1490)
...||+. ++||++++ ++||+|||++||+.|++||+++||||+|+|+|++|
T Consensus 270 ~~~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 270 TRYWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred EEEEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 6778887 78999988 89999999999999999999999999999999987
No 12
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=4.5e-54 Score=512.73 Aligned_cols=324 Identities=42% Similarity=0.845 Sum_probs=284.7
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcC--CcEEEEEEc
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIG 1221 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--g~KvllsiG 1221 (1490)
+|+|||++|+.++ ..|.+++++.++||||+|+|+.++.++.+... +...+. ..+..++.+|++ ++|||++||
T Consensus 1 ~~~~Y~~~w~~~~---~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~-~~~~~~--~~~~~~~~l~~~~~~~kvl~svg 74 (334)
T smart00636 1 RVVGYFTNWGVYG---RNFPVDDIPASKLTHIIYAFANIDPDGTVTIG-DEWADI--GNFGQLKALKKKNPGLKVLLSIG 74 (334)
T ss_pred CEEEEECchhccC---CCCChhHCCcccCcEEEEeeeeeCCCCCEeeC-Ccchhh--hhHHHHHHHHHhCCCCEEEEEEe
Confidence 5899999999654 46899999999999999999999997754332 333322 123446666664 899999999
Q ss_pred CcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC---
Q psy10300 1222 GWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP--- 1298 (1490)
Q Consensus 1222 G~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~--- 1298 (1490)
||..+ ..|+.++++++.|++||++|++++++|+|||||||||+|.. ...++++|+.||++||++|++
T Consensus 75 g~~~s--~~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~--------~~~d~~~~~~ll~~lr~~l~~~~~ 144 (334)
T smart00636 75 GWTES--DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGA--------RGDDRENYTALLKELREALDKEGA 144 (334)
T ss_pred CCCCC--cchhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCC--------CccHHHHHHHHHHHHHHHHHHhcc
Confidence 99874 67999999999999999999999999999999999999862 116788999999999999985
Q ss_pred --CCcEEEEEeCCChhhhhccCC-hhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcC
Q psy10300 1299 --HDLLLSAAVSPSKAVIDNAYD-IPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHG 1375 (1490)
Q Consensus 1299 --~~~~ls~av~~~~~~~~~~~d-~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g 1375 (1490)
++++|++++++........|+ +.+|.+++|||+||+||+|+.|+..+||+|||++...++ ...+++.+|++|++.|
T Consensus 145 ~~~~~~lsi~v~~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~-~~~~v~~~v~~~~~~g 223 (334)
T smart00636 145 EGKGYLLTIAVPAGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP-EKYNVDYAVKYYLCKG 223 (334)
T ss_pred cCCceEEEEEecCChHHHHhhhhhHHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC-CCccHHHHHHHHHHcC
Confidence 489999999987766556688 599999999999999999999999999999999876654 5678999999999999
Q ss_pred CCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEee-C-
Q psy10300 1376 ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK-G- 1453 (1490)
Q Consensus 1376 ~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~-~- 1453 (1490)
+|++||+|||||||+.|++.++...++++++.|.+.+|..+...|.++|.|||+.+ +|...||+.. ..+|.|+ +
T Consensus 224 vp~~KlvlGip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~-~~~y~~~~~~ 299 (334)
T smart00636 224 VPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTA-KAPYAYNPGT 299 (334)
T ss_pred CCHHHeEEeeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCC-ceeEEEECCC
Confidence 99999999999999999999988888999998988888888889999999999876 8999999985 6789997 4
Q ss_pred CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q psy10300 1454 DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488 (1490)
Q Consensus 1454 ~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~D 1488 (1490)
++||+|||++||+.|++||+++||||+|+|+|++|
T Consensus 300 ~~~v~ydd~~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 300 GQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 49999999999999999999999999999999998
No 13
>KOG2806|consensus
Probab=100.00 E-value=1.6e-54 Score=523.52 Aligned_cols=332 Identities=33% Similarity=0.630 Sum_probs=282.6
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcC--CcEEEEEEc
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIG 1221 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--g~KvllsiG 1221 (1490)
.++||+..|.+++.+.....+.++++.+|||++|+|+.++.++......+. ....|......+|.+ ++|+|||||
T Consensus 53 ~~~c~~~~~~~~~~~~~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~---~~~~f~~~~~~~k~~n~~vK~llSIG 129 (432)
T KOG2806|consen 53 NTVCEKSIVGYYPSRIGPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGAR---TMNRFSSYNQTAKSSNPTVKVMISIG 129 (432)
T ss_pred cccccceeEEEeCCCCCCCCccccChhhcCcceEEEeeecccccEEeccch---hhhhhHHHHHHHHhhCCCceEEEEec
Confidence 445555555555444346789999999999999999999999888776653 234566666666654 799999999
Q ss_pred CcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCC-
Q psy10300 1222 GWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD- 1300 (1490)
Q Consensus 1222 G~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~- 1300 (1490)
||++ .+..|+.|++|++.|+.||++|++||++|+|||||||||||. ....++.+|..||+|||++|.+..
T Consensus 130 G~~~-ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~--------~~~~d~~~~~~~i~elr~~~~~~~~ 200 (432)
T KOG2806|consen 130 GSHG-NSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPL--------FTPSDQLEFSRFIQELRSAFARETL 200 (432)
T ss_pred CCCC-CccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCC--------CchhhHHHHHHHHHHHHHHHHHHhh
Confidence 9952 247899999999999999999999999999999999999994 036799999999999999997532
Q ss_pred ------cEEEEEeCCC-hhhhhccCChhhhcccCcEEEEeeccCCCCCCC--CCCCCCCCCCCCCCCCCCcCHHHHHHHH
Q psy10300 1301 ------LLLSAAVSPS-KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDK--KTGHVAPMYALPNDTTPTFNANYSLHYW 1371 (1490)
Q Consensus 1301 ------~~ls~av~~~-~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~--~~g~~spl~~~~~~~~~~~~i~~~v~~~ 1371 (1490)
.+|+.++.+. ......+||+.+|.+++||||||+|||||+|.. .+||+||||.........+|++..|++|
T Consensus 201 ~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~~~~~~Nvd~~~ky~ 280 (432)
T KOG2806|consen 201 KSPDTAKVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSMTNPKMNVDSLLKYW 280 (432)
T ss_pred ccCCccceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcccccCcchhhhHHHH
Confidence 2344444444 336778999999999999999999999999999 8999999998655445678999999999
Q ss_pred HHcCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCc-ccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEE
Q psy10300 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGE-NTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYA 1450 (1490)
Q Consensus 1372 ~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~ 1450 (1490)
++.|.|++||+||||||||.|++++.... .+.+..+.+..+. .+...|+++|.|||+...+.+ ...||+..+. +|.
T Consensus 281 ~~~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~-~Y~ 357 (432)
T KOG2806|consen 281 TEKGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQT-PYL 357 (432)
T ss_pred hhcCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCcee-eeE
Confidence 99999999999999999999999988777 7788888888776 666889999999999776655 7899998866 999
Q ss_pred ee--CCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q psy10300 1451 FK--GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490 (1490)
Q Consensus 1451 ~~--~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD~ 1490 (1490)
|+ +++||+|||++||+.|++||+++||||+|||.||+||+
T Consensus 358 ~~~~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~ 399 (432)
T KOG2806|consen 358 YNIPYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDE 399 (432)
T ss_pred EecCCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCC
Confidence 99 99999999999999999999999999999999999997
No 14
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=6.3e-54 Score=498.16 Aligned_cols=279 Identities=34% Similarity=0.673 Sum_probs=239.2
Q ss_pred cEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHh--cCCcEEEEEE
Q psy10300 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALK--KKGVKVTLAI 1220 (1490)
Q Consensus 1143 ~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k--~~g~Kvllsi 1220 (1490)
-+++|||++|+ ++|.+++|++++||||+|+|+.++.++..+...+... ..+.+.++.+| ..++|+||||
T Consensus 3 ~~~~~Y~~~w~------~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~~~~---~~~~~~~~~~k~~~~~lkvlisi 73 (299)
T cd02879 3 IVKGGYWPAWS------EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDE---SEFSTFTETVKRKNPSVKTLLSI 73 (299)
T ss_pred eEEEEEECCCC------CCCChhHCCcccCCEEEEEEEEecCCCCEEeeccccH---HHHHHHHHHHHHhCCCCeEEEEE
Confidence 47899999997 4789999999999999999999998775554433211 22223333444 4479999999
Q ss_pred cCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC--
Q psy10300 1221 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP-- 1298 (1490)
Q Consensus 1221 GG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~-- 1298 (1490)
|||+.+ ++.|+.|++++++|++||+++++|+++|||||||||||||. .++|+++|+.||++||++|+.
T Consensus 74 GG~~~~-s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~---------~~~d~~n~~~ll~elr~~l~~~~ 143 (299)
T cd02879 74 GGGGSD-SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS---------SQVEMENFGKLLEEWRAAVKDEA 143 (299)
T ss_pred eCCCCC-CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCC---------ChhHHHHHHHHHHHHHHHHHHHh
Confidence 999864 36899999999999999999999999999999999999996 367999999999999999972
Q ss_pred -----CCcEEEEEeCCChhh----hhccCChhhhcccCcEEEEeeccCCCCCCC-CCCCCCCCCCCCCCCCCCcCHHHHH
Q psy10300 1299 -----HDLLLSAAVSPSKAV----IDNAYDIPVMSENLDWISVMTYDYHGQWDK-KTGHVAPMYALPNDTTPTFNANYSL 1368 (1490)
Q Consensus 1299 -----~~~~ls~av~~~~~~----~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~-~~g~~spl~~~~~~~~~~~~i~~~v 1368 (1490)
++++|++++++.... ...+||+++|.++||||+||+||+||.|.. .+||+|||++.. ...+++.+|
T Consensus 144 ~~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~----~~~~~~~~v 219 (299)
T cd02879 144 RSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN----SNVSTDYGI 219 (299)
T ss_pred hccCCCcEEEEeecccchhhccccccccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCC----CCCCHHHHH
Confidence 578999999876654 346789999999999999999999999986 478999999743 346899999
Q ss_pred HHHHHcCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceee
Q psy10300 1369 HYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGP 1448 (1490)
Q Consensus 1369 ~~~~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~ 1448 (1490)
++|++.|+|++|||||||||||.|++ ||+.. ..+
T Consensus 220 ~~~~~~g~p~~KlvlGvp~YGr~~~~---------------------------------------------~D~~~-~~~ 253 (299)
T cd02879 220 KSWIKAGVPAKKLVLGLPLYGRAWTL---------------------------------------------YDTTT-VSS 253 (299)
T ss_pred HHHHHcCCCHHHEEEEeccccccccc---------------------------------------------cCCCc-ceE
Confidence 99999999999999999999999963 55443 458
Q ss_pred EEeeCCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q psy10300 1449 YAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490 (1490)
Q Consensus 1449 y~~~~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD~ 1490 (1490)
|.+++++||+|||++||+.|++||+++||||+|+|+|++||+
T Consensus 254 y~~~~~~wi~ydd~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~ 295 (299)
T cd02879 254 YVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDDN 295 (299)
T ss_pred EEEECCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEEeecCCc
Confidence 999999999999999999999999999999999999999995
No 15
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=6.2e-54 Score=505.65 Aligned_cols=296 Identities=34% Similarity=0.681 Sum_probs=257.5
Q ss_pred EEEEEccCccccCCCCCCCCC-CCCCCCccEEEEeeEEecCCCcEeccCCCcc---------------hhhHHHHHHHHH
Q psy10300 1145 IVCYFTNWAWYRQSGGKYLPS-DIDSDLCTHVIYGFAVLDTDQLVIKPHDTWA---------------DLDNKFYEKVTA 1208 (1490)
Q Consensus 1145 vvgY~~~w~~~~~~~~~~~~~-~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~---------------~~~~~~~~~i~~ 1208 (1490)
|+|||++|+.||++ +.+. +|++++||||+|+|+.++.++.++...+.+. +.....+..+..
T Consensus 1 v~~Y~~~W~~~~~~---~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (322)
T cd06548 1 VVGYFTNWGIYGRN---YFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRK 77 (322)
T ss_pred CEEEeCCCcccCCC---CCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHH
Confidence 68999999999864 3555 6999999999999999999988766443221 223345566667
Q ss_pred HhcC--CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHH
Q psy10300 1209 LKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFA 1286 (1490)
Q Consensus 1209 ~k~~--g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~ 1286 (1490)
+|++ ++|||+|||||..+ ..|+.|+++++.|++||++|++|+++|+|||||||||||...+.+++...++++++|+
T Consensus 78 lk~~~p~lkvl~siGG~~~s--~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d~~~~~ 155 (322)
T cd06548 78 LKQKNPHLKILLSIGGWTWS--GGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFT 155 (322)
T ss_pred HHHhCCCCEEEEEEeCCCCC--CCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChhHHHHHH
Confidence 6654 79999999999876 5799999999999999999999999999999999999998655455556678999999
Q ss_pred HHHHHHHHhcCCC------CcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10300 1287 DLIKELRAAFNPH------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1360 (1490)
Q Consensus 1287 ~ll~eLr~~l~~~------~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~ 1360 (1490)
.||++||++|++. +++|++++++..... ..+++++|.++||||+||+|||||.|+..+||+|||+..+.++..
T Consensus 156 ~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~-~~~~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~~~ 234 (322)
T cd06548 156 LLLKELREALDALGAETGRKYLLTIAAPAGPDKL-DKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPG 234 (322)
T ss_pred HHHHHHHHHHHHhhhccCCceEEEEEccCCHHHH-hcCCHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCCCC
Confidence 9999999999874 599999999877654 457899999999999999999999999999999999987665556
Q ss_pred CcCHHHHHHHHHHcCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEE
Q psy10300 1361 TFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 1440 (1490)
Q Consensus 1361 ~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~ 1440 (1490)
..+++.+|++|++.|+|++|||||||||||.|++ |...|
T Consensus 235 ~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-----------------------------------------~~~~~ 273 (322)
T cd06548 235 GYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-----------------------------------------YTRYW 273 (322)
T ss_pred CccHHHHHHHHHHcCCCHHHeEEEecccccccCC-----------------------------------------cEEEE
Confidence 7899999999999999999999999999999963 67889
Q ss_pred cCCCceeeEEeeC--CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q psy10300 1441 DRKRRIGPYAFKG--DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488 (1490)
Q Consensus 1441 D~~~~~~~y~~~~--~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~D 1488 (1490)
|+.+. .+|.|++ ++||+|||++||+.|++||+++||||+|+|+|++|
T Consensus 274 D~~~~-~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 274 DEVAK-APYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred cCCcc-eeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 98875 5888987 89999999999999999999999999999999998
No 16
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.1e-53 Score=476.35 Aligned_cols=354 Identities=22% Similarity=0.396 Sum_probs=281.7
Q ss_pred CCCCCeEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCC------------------ccccCCcchhhhh
Q psy10300 120 PGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSR------------------ALIPEDLEYDVIK 181 (1490)
Q Consensus 120 ~~~~~~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~------------------~~~~~d~~~d~~~ 181 (1490)
....+|||+||.+|++|.. ..|.|.+||..-.|||+|+|+.|+.++. .....|+|.+..+
T Consensus 34 ~d~~~rvvgYY~sWs~~d~--~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~ 111 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDR--QDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLK 111 (441)
T ss_pred CCCCceEEEEecccccCCC--cccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeecccccccc
Confidence 5566899999999999977 6899999999999999999999998873 2234677776567
Q ss_pred hhhHHHhhhhhcCCCceEEEEecc-----chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccch
Q psy10300 182 GGYKSFLGLKEANPELKVYLAVKS-----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESI 256 (1490)
Q Consensus 182 ~~~~~~~~LK~~np~lKvllsvGg-----~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~ 256 (1490)
+.+..+..||+.+|+||+++|||| .|+.|+.+.++|++|++++|+|||+|+|||||||||||+.... .+....
T Consensus 112 G~~~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~--~~~~~~ 189 (441)
T COG3325 112 GHFGALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGD--AGNCGR 189 (441)
T ss_pred chHHHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCC--CCCCCC
Confidence 889999999999999999999999 7999999999999999999999999999999999999997653 233467
Q ss_pred hhhHHHHHHHHHHHHHHHhhcC------cEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcc
Q psy10300 257 ANERSDFSTFIQELSSTLRRNN------YQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTK 330 (1490)
Q Consensus 257 ~~d~~~f~~ll~eLr~~~~~~~------~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~ 330 (1490)
+.|+++|+.||+|||++|...+ ++||+|.|+....++ +-+..++.++|||||+|||||||.| .... |||
T Consensus 190 ~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~W-n~~~---Gh~ 264 (441)
T COG3325 190 PKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGAW-NETL---GHH 264 (441)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeeccccc-cccc---ccc
Confidence 8899999999999999998753 899999998887555 8899999999999999999999999 3445 899
Q ss_pred cCCcccccccc----------cccHHHHHHHHHHcCCCCCcEEEeeeeeeeeEEecCCCCCC----CCccccc-CCCCCC
Q psy10300 331 VNIQVTSTIAN----------FNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYG----LGATVKG-PGTEGK 395 (1490)
Q Consensus 331 spl~~~~~~~~----------~~~v~~~v~~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~----~g~p~~g-~g~~g~ 395 (1490)
+|||+..-+.. ..+....++.....++||+|||||+|||||.|...+....+ ....... .-..|.
T Consensus 265 a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gt 344 (441)
T COG3325 265 AALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGT 344 (441)
T ss_pred cccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCc
Confidence 99997532211 12222356666666788999999999999999977764421 1111111 011222
Q ss_pred ccCCCc---cccHHHHHH-HhcCCCcceeeCCC-CCceeEe--CCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCC
Q psy10300 396 YTQMPG---YLAFFEVCN-KFKDKTWRHFTDSN-GEPFMVK--KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468 (1490)
Q Consensus 396 ~t~~~g---~lsY~eic~-~~~~~~~~~~~D~~-~~py~~~--~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DD 468 (1490)
.-...+ +..++.+-. .....++.+.||+. ++||+|. .+++|+|||++||+.|++||++++|||+|+|.++.|
T Consensus 345 w~a~n~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD- 423 (441)
T COG3325 345 WEAGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD- 423 (441)
T ss_pred ccccccCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCC-
Confidence 211112 222233333 23345688889988 8999994 677999999999999999999999999999999988
Q ss_pred CCCCCCCCChHHHHHHHhcCC
Q psy10300 469 FRGFCGQKYPLLSAVVSNLQP 489 (1490)
Q Consensus 469 f~g~Cg~~~PLl~~i~~~l~~ 489 (1490)
...-||++++..+..
T Consensus 424 ------~n~~llna~~~~l~~ 438 (441)
T COG3325 424 ------ENGVLLNAVNEGLGF 438 (441)
T ss_pred ------cchhHHHHhhcccCC
Confidence 234699999988754
No 17
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.5e-49 Score=477.26 Aligned_cols=327 Identities=30% Similarity=0.584 Sum_probs=279.6
Q ss_pred CeEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccc--cCCcchhhhhhhhHHHhhhhhcCCCceEEE
Q psy10300 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI--PEDLEYDVIKGGYKSFLGLKEANPELKVYL 201 (1490)
Q Consensus 124 ~~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~--~~d~~~d~~~~~~~~~~~LK~~np~lKvll 201 (1490)
+||||||.+|+.+|.+ .|.+++|+...||||||+|+.++.++.... ......+.....++.+..+|+++|++|||+
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 6899999999999888 799999999999999999999998775432 111122344677889999999999999999
Q ss_pred Eecc------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHh
Q psy10300 202 AVKS------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLR 275 (1490)
Q Consensus 202 svGg------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~ 275 (1490)
+||| .|..+++++..|++||++++++|++|+|||||||||+|.... .+.++++|+.||++||++|+
T Consensus 79 sigg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~--------~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 79 SIGGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSG--------DPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp EEEETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTS--------STTHHHHHHHHHHHHHHHHH
T ss_pred EeccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccccc--------cchhhhhhhhhhhhhhhhhc
Confidence 9998 488899999999999999999999999999999999997652 15689999999999999999
Q ss_pred hc-----CcEEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHH
Q psy10300 276 RN-----NYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350 (1490)
Q Consensus 276 ~~-----~~~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~ 350 (1490)
+. +++|++++|+.... ...+|+++|.++||||+||+||+|++|+. .+ ++++||+.........+++.+++
T Consensus 151 ~~~~~~~~~~ls~a~p~~~~~-~~~~~~~~l~~~vD~v~~m~yD~~~~~~~-~~---~~~~~l~~~~~~~~~~~~~~~v~ 225 (343)
T PF00704_consen 151 RANRSGKGYILSVAVPPSPDY-YDKYDYKELAQYVDYVNLMTYDYHGPWSD-VT---GPNAPLYDSSWDSNYYSVDSAVQ 225 (343)
T ss_dssp HHHHHHSTSEEEEEEECSHHH-HTTHHHHHHHTTSSEEEEETTSSSSTTSS-BE---TTSSSSSHTTTSGTSSSHHHHHH
T ss_pred ccccccceeEEeecccccccc-ccccccccccccccccccccccCCCCccc-cc---ccccccccCCccCCCceeeeehh
Confidence 94 89999999987653 34459999999999999999999999944 44 89999998765445789999999
Q ss_pred HHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CCcee
Q psy10300 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GEPFM 429 (1490)
Q Consensus 351 ~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~py~ 429 (1490)
+|+..|+|++||+||||+||+.|++.+........++. +..+..+..+|.++|.|+|..+.+..+...||+. +++|+
T Consensus 226 ~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~ 303 (343)
T PF00704_consen 226 YWIKAGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYA 303 (343)
T ss_dssp HHHHTTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEE
T ss_pred hhccccCChhheeecCCcccccceecCCcCCCCCCccc--ccccccccCCCccccccchhhcccCCcceEEeecccceEE
Confidence 99999999999999999999999998887766655544 3556678889999999999998777777777776 88999
Q ss_pred EeC--CeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCC
Q psy10300 430 VKK--DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467 (1490)
Q Consensus 430 ~~~--~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~D 467 (1490)
+.. ++||+|||++|+++|++|++++||||+|+|+|++|
T Consensus 304 ~~~~~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 304 YNDDKKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EETTTTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EecCCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 988 79999999999999999999999999999999987
No 18
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=3.3e-48 Score=465.51 Aligned_cols=332 Identities=37% Similarity=0.775 Sum_probs=275.9
Q ss_pred cEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEecc--CCCcchhhHHHHHHHHHH--hcCCcEEEE
Q psy10300 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKP--HDTWADLDNKFYEKVTAL--KKKGVKVTL 1218 (1490)
Q Consensus 1143 ~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~--~~~~~~~~~~~~~~i~~~--k~~g~Kvll 1218 (1490)
++|||||++|+.++++ .|.+++++.++||||+|+|+.++.++..... ............+.++.+ +..|+||||
T Consensus 1 ~~vv~Y~~~~~~~~~~--~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvll 78 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPG--SYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLL 78 (343)
T ss_dssp BEEEEEEEGGGGSSTG--CSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEEECCcCCCCCC--CCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEE
Confidence 5899999999977655 6789999999999999999999999876421 001112233334444444 455999999
Q ss_pred EEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC
Q psy10300 1219 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1219 siGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
+||||..+. ..|+.++.+++.|++||++|+++|++|+|||||||||+|.. ...+.++.+|..||++||++|++
T Consensus 79 sigg~~~~~-~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~------~~~~~~~~~~~~~l~~L~~~l~~ 151 (343)
T PF00704_consen 79 SIGGWGMSS-DGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSS------SGDPQDKDNYTAFLKELRKALKR 151 (343)
T ss_dssp EEEETTSSH-HHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTS------TSSTTHHHHHHHHHHHHHHHHHH
T ss_pred Eeccccccc-cccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeeccc------cccchhhhhhhhhhhhhhhhhcc
Confidence 999997762 37999999999999999999999999999999999999873 11257999999999999999988
Q ss_pred -----CCcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Q psy10300 1299 -----HDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVS 1373 (1490)
Q Consensus 1299 -----~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~ 1373 (1490)
++++|++++|+...... .+++.+|.++||||+||+||++++|...+++++||+....+ ....+++.++++|+.
T Consensus 152 ~~~~~~~~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~v~~~~~ 229 (343)
T PF00704_consen 152 ANRSGKGYILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWD-SNYYSVDSAVQYWIK 229 (343)
T ss_dssp HHHHHSTSEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTS-GTSSSHHHHHHHHHH
T ss_pred cccccceeEEeecccccccccc-ccccccccccccccccccccCCCCcccccccccccccCCcc-CCCceeeeehhhhcc
Confidence 48999999998877553 44999999999999999999999999999999999975533 346789999999999
Q ss_pred cCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC
Q psy10300 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG 1453 (1490)
Q Consensus 1374 ~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~~ 1453 (1490)
.|+|++||+||||+||+.|++.+........+.. ...+..+...|.+.|.++|..+.+.++...||+. ...+|.+.+
T Consensus 230 ~g~p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~y~~~~ 306 (343)
T PF00704_consen 230 AGVPPSKLVLGLPFYGRSWTLVNGSPNGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNGYTVQWDDT-AQAPYAYND 306 (343)
T ss_dssp TTSTGGGEEEEEESEEEEEESSSSTTSTTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETT-TTEEEEEET
T ss_pred ccCChhheeecCCcccccceecCCcCCCCCCccc--ccccccccCCCccccccchhhcccCCcceEEeec-ccceEEEec
Confidence 9999999999999999999998877766555443 2455667788999999999999899999999998 466888887
Q ss_pred --CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCC
Q psy10300 1454 --DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488 (1490)
Q Consensus 1454 --~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~D 1488 (1490)
++||+|||++|+++|++||+++||||+|+|+|++|
T Consensus 307 ~~~~~i~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 307 DKKHWISYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp TTTEEEEE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred CCCeEEEeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 79999999999999999999999999999999998
No 19
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.9e-48 Score=458.62 Aligned_cols=294 Identities=22% Similarity=0.375 Sum_probs=243.5
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhc--CCcEEE--EE
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKK--KGVKVT--LA 1219 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~--~g~Kvl--ls 1219 (1490)
.++|||++|+.+ .|.+.+++.++||||+|+|+.++.++..+...+. .+.+..+ +..+|+ +++||| ++
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~-~~~~~~~---~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGT-HDIDKGW---IEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeecC-cchhhHH---HHHHHhhCCCcEEEeEEE
Confidence 589999999743 5778899999999999999999988765433221 2233333 334444 479999 77
Q ss_pred EcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEe-ecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC
Q psy10300 1220 IGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD-WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1220 iGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDID-wE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
+|||+.+ .|+.++++++.|++||+++++|+++||||||||| ||||... ..++++++|+.||++||++|++
T Consensus 75 ~gg~~~~---~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~------~~~~d~~~~~~~l~el~~~l~~ 145 (318)
T cd02876 75 FEGWSYQ---DLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAY------GVPDKRKELIQLVIHLGETLHS 145 (318)
T ss_pred ECCCCHH---HHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhccc------CCHHHHHHHHHHHHHHHHHHhh
Confidence 7999753 5999999999999999999999999999999999 9999731 2267999999999999999999
Q ss_pred CCcEEEEEeCCChhh-----hhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHH
Q psy10300 1299 HDLLLSAAVSPSKAV-----IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVS 1373 (1490)
Q Consensus 1299 ~~~~ls~av~~~~~~-----~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~ 1373 (1490)
++++|++++++.... ....||+++|.++||||+||+||+||. ..+||+|||++ ++.+|++|+.
T Consensus 146 ~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~~----------v~~~v~~~~~ 213 (318)
T cd02876 146 ANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLSW----------VRSCLELLLP 213 (318)
T ss_pred cCCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcHH----------HHHHHHHHHh
Confidence 899999998875432 234689999999999999999999987 78999999985 8999999999
Q ss_pred cC-CCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEee
Q psy10300 1374 HG-ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFK 1452 (1490)
Q Consensus 1374 ~g-~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~ 1452 (1490)
.| +|++|||||||||||.|++.+ .+ +.+++.++++.+.+.++.+.||+.....+|.|.
T Consensus 214 ~~~vp~~KlvlGip~YG~~w~~~~-----~~----------------~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~ 272 (318)
T cd02876 214 ESGKKRAKILLGLNFYGNDYTLPG-----GG----------------GAITGSEYLKLLKSNKPKLQWDEKSAEHFFEYK 272 (318)
T ss_pred cCCCCHHHeEEeccccccccccCC-----CC----------------ceeehHHHHHHHHhcCCCceeccCCCcceEEEe
Confidence 87 999999999999999998643 01 112223444555667889999998778889997
Q ss_pred C---CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q psy10300 1453 G---DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489 (1490)
Q Consensus 1453 ~---~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD 1489 (1490)
+ ++||||||++||+.|++||+++|| |+|+|+||+++
T Consensus 273 ~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 273 NKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 5 799999999999999999999999 99999999975
No 20
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=9.8e-47 Score=444.14 Aligned_cols=290 Identities=20% Similarity=0.326 Sum_probs=240.6
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEE--EE
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVY--LA 202 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvl--ls 202 (1490)
+++|||.+|+.+ .|.+.+++...||||+|+|+.+++++..+...+ ..|.+. ..+..||++||++||| ++
T Consensus 4 ~~~~y~~~W~~~-----~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~-~~~~~~---~~~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSH-----GYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEG-THDIDK---GWIEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCcc-----chHHHHHHhccCCEecceEEEEecCCCeeeeec-Ccchhh---HHHHHHHhhCCCcEEEeEEE
Confidence 478999999764 588999999999999999999998764333322 122222 2466899999999999 66
Q ss_pred ecc----chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEE-eeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhc
Q psy10300 203 VKS----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN-VKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRN 277 (1490)
Q Consensus 203 vGg----~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdld-we~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~ 277 (1490)
+|| .|+.+++++..|++||+++++|+++||||||||| ||||... +.++|+++|+.||+|||++|+++
T Consensus 75 ~gg~~~~~f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~--------~~~~d~~~~~~~l~el~~~l~~~ 146 (318)
T cd02876 75 FEGWSYQDLQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAY--------GVPDKRKELIQLVIHLGETLHSA 146 (318)
T ss_pred ECCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhccc--------CCHHHHHHHHHHHHHHHHHHhhc
Confidence 788 5999999999999999999999999999999999 9999754 23789999999999999999999
Q ss_pred CcEEEEEecccccc-----cccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHHH
Q psy10300 278 NYQLTLTSPGVIDR-----KTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNW 352 (1490)
Q Consensus 278 ~~~ls~~v~~~~~~-----~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~ 352 (1490)
+++|+++|++.... ....||+++|+++||||+||+||+|+. ..+ |++|||+ .++.+|++|
T Consensus 147 ~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~---~~~---g~~apl~---------~v~~~v~~~ 211 (318)
T cd02876 147 NLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP---QRP---GPNAPLS---------WVRSCLELL 211 (318)
T ss_pred CCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccCCC---CCC---CCCCCcH---------HHHHHHHHH
Confidence 99999999875432 335789999999999999999999976 345 8999984 699999999
Q ss_pred HHcC-CCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CC-cee
Q psy10300 353 IKKG-ARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GE-PFM 429 (1490)
Q Consensus 353 ~~~g-~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~-py~ 429 (1490)
+..| +|++||+||||||||.|++.+ .+.+..| ..|.++|+ +.++...||+. +. +|.
T Consensus 212 ~~~~~vp~~KlvlGip~YG~~w~~~~-----~~~~~~~-------------~~~~~~~~---~~~~~~~~d~~~~~~~~~ 270 (318)
T cd02876 212 LPESGKKRAKILLGLNFYGNDYTLPG-----GGGAITG-------------SEYLKLLK---SNKPKLQWDEKSAEHFFE 270 (318)
T ss_pred HhcCCCCHHHeEEeccccccccccCC-----CCceeeh-------------HHHHHHHH---hcCCCceeccCCCcceEE
Confidence 9997 999999999999999999754 1222211 24556655 45678888887 54 577
Q ss_pred EeC---CeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCC
Q psy10300 430 VKK---DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468 (1490)
Q Consensus 430 ~~~---~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DD 468 (1490)
|.+ ++||+|||++||+.|++||+++|| |+|+|+|++++
T Consensus 271 y~~~~~~~~v~ydd~~Si~~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 271 YKNKGGKHAVFYPTLKSIQLRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred EecCCCcEEEEeCCHHHHHHHHHHHHHcCC-cEEEEcccCCc
Confidence 865 689999999999999999999999 99999999976
No 21
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=4.5e-45 Score=432.72 Aligned_cols=296 Identities=23% Similarity=0.356 Sum_probs=235.3
Q ss_pred CCCCCcEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEE
Q psy10300 1138 STKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVT 1217 (1490)
Q Consensus 1138 ~~~~~~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~Kvl 1217 (1490)
.....++|+||..+-. .-...+++++|||.++ +. .+ .+.+..+|++|+||+
T Consensus 31 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~tti~~~-------~~----------~~---~~~~~~A~~~~v~v~ 81 (358)
T cd02875 31 EIGPRFEFLVFSVNST---------NYPNYDWSKVTTIAIF-------GD----------ID---DELLCYAHSKGVRLV 81 (358)
T ss_pred cCCCceEEEEEEeCCC---------cCcccccccceEEEec-------CC----------CC---HHHHHHHHHcCCEEE
Confidence 3446789999987522 2356789999999976 10 11 255778999999999
Q ss_pred EEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcC
Q psy10300 1218 LAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN 1297 (1490)
Q Consensus 1218 lsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~ 1297 (1490)
++ |++. ..++.++++|++||+++++++++|||||||||||||.. ..+.++++|+.||++||++|+
T Consensus 82 ~~-~~~~-------~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~-------~~~~d~~~~t~llkelr~~l~ 146 (358)
T cd02875 82 LK-GDVP-------LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPIT-------KGSPEYYALTELVKETTKAFK 146 (358)
T ss_pred EE-CccC-------HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCC-------CCcchHHHHHHHHHHHHHHHh
Confidence 87 3221 23578999999999999999999999999999999972 135689999999999999998
Q ss_pred CC--CcEEEEEeCCChhhhhc-cCChhhhcccCcEEEEeeccCCCC-CCC--CCCCCCCCCCCCCCCCCCcCHHHHHHHH
Q psy10300 1298 PH--DLLLSAAVSPSKAVIDN-AYDIPVMSENLDWISVMTYDYHGQ-WDK--KTGHVAPMYALPNDTTPTFNANYSLHYW 1371 (1490)
Q Consensus 1298 ~~--~~~ls~av~~~~~~~~~-~~d~~~l~~~vD~i~vmtYD~~g~-w~~--~~g~~spl~~~~~~~~~~~~i~~~v~~~ 1371 (1490)
+. +++|+++++..+..... .||+++|+++||||+||+||+|++ |+. .+|+++|+.+ ++.+|++|
T Consensus 147 ~~~~~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~~----------v~~~v~~~ 216 (358)
T cd02875 147 KENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYSQ----------TLSGYNNF 216 (358)
T ss_pred hcCCCcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCchh----------HHHHHHHH
Confidence 75 68999998865544433 499999999999999999999975 653 5788998753 88999999
Q ss_pred HHcCCCCCcEEEEeeccceeeeeccCCCCC-----CCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCce
Q psy10300 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNG-----LNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRI 1446 (1490)
Q Consensus 1372 ~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~-----~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~ 1446 (1490)
+..|+|++|||||||||||.|++.+..... .+.+..|.+. .....+.++|.+||+.++..++.+.||+..+.
T Consensus 217 ~~~gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~---~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~ 293 (358)
T cd02875 217 TKLGIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGANC---SDAAGRQIPYSEIMKQINSSIGGRLWDSEQKS 293 (358)
T ss_pred HHcCCCHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCCCCC---cCCCCCccCHHHHHHHHhcCCCceeecccccc
Confidence 999999999999999999999976554111 1222222111 01123468999999999888899999998766
Q ss_pred eeEEeeC---C-EEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCCC
Q psy10300 1447 GPYAFKG---D-QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490 (1490)
Q Consensus 1447 ~~y~~~~---~-~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD~ 1490 (1490)
..|.|.+ . +||||||++||+.|++||+++||||+|+|+||+|||
T Consensus 294 py~~y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~ 341 (358)
T cd02875 294 PFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDY 341 (358)
T ss_pred ceEEEecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 5555643 2 799999999999999999999999999999999998
No 22
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1.8e-45 Score=433.46 Aligned_cols=293 Identities=23% Similarity=0.389 Sum_probs=244.8
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEcCc
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1223 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiGG~ 1223 (1490)
+|+|||++|... .|....-..+++|||++.|+.++.+|.+ .... ..+.++.+|++++|||++||||
T Consensus 3 ~~~g~~~~~~~~-----~~~~~~~~~~~lt~v~p~w~~~~~~g~~-~~~~--------~~~~~~~a~~~~~kv~~~i~~~ 68 (313)
T cd02874 3 EVLGYYTPRNGS-----DYESLRANAPYLTYIAPFWYGVDADGTL-TGLP--------DERLIEAAKRRGVKPLLVITNL 68 (313)
T ss_pred eEEEEEecCCCc-----hHHHHHHhcCCCCEEEEEEEEEcCCCCC-CCCC--------CHHHHHHHHHCCCeEEEEEecC
Confidence 589999999832 2344445678999999999999988753 2111 1345777888899999999998
Q ss_pred CCC--CCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCc
Q psy10300 1224 NDS--AGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDL 1301 (1490)
Q Consensus 1224 ~~s--~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~ 1301 (1490)
.++ ....|+.++++++.|++||++|++++++|||||||||||+|. .+++++|+.||++||++|+++++
T Consensus 69 ~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~----------~~d~~~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 69 TNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP----------PEDREAYTQFLRELSDRLHPAGY 138 (313)
T ss_pred CCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC----------HHHHHHHHHHHHHHHHHhhhcCc
Confidence 731 235789999999999999999999999999999999999874 57899999999999999998899
Q ss_pred EEEEEeCCChh-----hhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcCC
Q psy10300 1302 LLSAAVSPSKA-----VIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA 1376 (1490)
Q Consensus 1302 ~ls~av~~~~~-----~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~ 1376 (1490)
+|+++++|... .+...||+++|.++||||+||+||+|+.| ..+||++|+.+ ++..+++++ .|+
T Consensus 139 ~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~-~~~gp~a~~~~----------~~~~~~~~~-~gv 206 (313)
T cd02874 139 TLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG-GPPGPVAPIGW----------VERVLQYAV-TQI 206 (313)
T ss_pred EEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCC-CCCCccCChHH----------HHHHHHHHH-hcC
Confidence 99998876532 22357899999999999999999999986 46899999865 677787776 789
Q ss_pred CCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC---
Q psy10300 1377 DRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG--- 1453 (1490)
Q Consensus 1377 p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~~--- 1453 (1490)
|++||+||||+|||.|++.+.. ....+.++|.++++++.+.++.+.||+......+.|.+
T Consensus 207 p~~KlvlGip~YG~~w~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g 269 (313)
T cd02874 207 PREKILLGIPLYGYDWTLPYKK-----------------GGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQG 269 (313)
T ss_pred CHHHEEEeecccccccccCCCC-----------------CcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCC
Confidence 9999999999999999865310 01235688999999999999999999997766666643
Q ss_pred -CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q psy10300 1454 -DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489 (1490)
Q Consensus 1454 -~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD 1489 (1490)
.+||+|||++||+.|++||+++||||+++|+||+||
T Consensus 270 ~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD 306 (313)
T cd02874 270 RRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLED 306 (313)
T ss_pred CEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 479999999999999999999999999999999998
No 23
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=4.2e-44 Score=424.40 Aligned_cols=298 Identities=17% Similarity=0.302 Sum_probs=231.8
Q ss_pred CCCCCeEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceE
Q psy10300 120 PGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKV 199 (1490)
Q Consensus 120 ~~~~~~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKv 199 (1490)
...+++||+|..+... -..++...-|||... + ..+ . .+... .+..++||
T Consensus 32 ~~~~~~~~~~~~~~~~---------~~~~~~~~~tti~~~-------~----~~~------~----~~~~~-A~~~~v~v 80 (358)
T cd02875 32 IGPRFEFLVFSVNSTN---------YPNYDWSKVTTIAIF-------G----DID------D----ELLCY-AHSKGVRL 80 (358)
T ss_pred CCCceEEEEEEeCCCc---------CcccccccceEEEec-------C----CCC------H----HHHHH-HHHcCCEE
Confidence 5677889999965432 255667777998744 1 111 0 22222 22347999
Q ss_pred EEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhc--
Q psy10300 200 YLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRN-- 277 (1490)
Q Consensus 200 llsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~-- 277 (1490)
+++.+..+ .++.+++.|++||+++++++++|||||||||||||...+ +.|+++|+.||+|||++|+++
T Consensus 81 ~~~~~~~~-~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~---------~~d~~~~t~llkelr~~l~~~~~ 150 (358)
T cd02875 81 VLKGDVPL-EQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKG---------SPEYYALTELVKETTKAFKKENP 150 (358)
T ss_pred EEECccCH-HHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCC---------cchHHHHHHHHHHHHHHHhhcCC
Confidence 98743243 456799999999999999999999999999999997542 358999999999999999986
Q ss_pred CcEEEEEeccccccccc-ccChhhhcccceeeeeecccCCCC-CCCcCcccCCcccCCcccccccccccHHHHHHHHHHc
Q psy10300 278 NYQLTLTSPGVIDRKTS-LVDISVVAPLVDLILLKSFNNDHM-DDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKK 355 (1490)
Q Consensus 278 ~~~ls~~v~~~~~~~~~-~yd~~~l~~~vD~i~lmtyd~~~~-~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~~~~ 355 (1490)
+++|+++|+........ .||+++|+++||||+||+||+|+. |+ ....+|++||+ .+++.+|++|+..
T Consensus 151 ~~~Lsvav~~~p~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w~--~~~~~g~~ap~---------~~v~~~v~~~~~~ 219 (358)
T cd02875 151 GYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWG--KECIAGANSPY---------SQTLSGYNNFTKL 219 (358)
T ss_pred CcEEEEEEecCcccccccccCHHHHHhhCCEeeEEeecccCCCCC--CCCCCCCCCCc---------hhHHHHHHHHHHc
Confidence 58999999865443443 499999999999999999999974 62 11123788886 4689999999999
Q ss_pred CCCCCcEEEeeeeeeeeEEecCCC-CC----CCCcccccCCCCCCccCCC-ccccHHHHHHHhcCCCcceeeCCC-CCce
Q psy10300 356 GARPEQIIIGIPFFGKSYRLFNRS-EY----GLGATVKGPGTEGKYTQMP-GYLAFFEVCNKFKDKTWRHFTDSN-GEPF 428 (1490)
Q Consensus 356 g~~~~Klvlgvp~yG~~~~l~~~~-~~----~~g~p~~g~g~~g~~t~~~-g~lsY~eic~~~~~~~~~~~~D~~-~~py 428 (1490)
|+|++|||||||||||.|++.+.. +. .++.|..|+ +++... +.++|.|||+++++.++.+.||+. ++||
T Consensus 220 gvp~~KLvLGip~YGr~w~~~~~~~~~~~~~~~~~p~~g~----~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py 295 (358)
T cd02875 220 GIDPKKLVMGLPWYGYDYPCLNGNLEDVVCTIPKVPFRGA----NCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPF 295 (358)
T ss_pred CCCHHHeEEEeCCCCCceeCCCCcccCcccCCCCCCcCCC----CCcCCCCCccCHHHHHHHHhcCCCceeeccccccce
Confidence 999999999999999999986654 11 123343332 223333 478999999998877788888877 8899
Q ss_pred eEe----CC-eEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCCCCC
Q psy10300 429 MVK----KD-EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 473 (1490)
Q Consensus 429 ~~~----~~-~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~g~C 473 (1490)
.+. +. +||+|||++||+.|++||+++||||+|+|+||+|||+|.|
T Consensus 296 ~~y~d~~g~~~~V~ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~ 345 (358)
T cd02875 296 YNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLP 345 (358)
T ss_pred EEEecCCCcEEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCc
Confidence 853 22 5999999999999999999999999999999999999987
No 24
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=6.8e-41 Score=381.50 Aligned_cols=241 Identities=28% Similarity=0.503 Sum_probs=206.0
Q ss_pred EEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEcCcC
Q psy10300 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWN 1224 (1490)
Q Consensus 1145 vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiGG~~ 1224 (1490)
|||||++|+.+. ..+++++.++||||+|+|+.++.+|.+... +. ...+...+..+|++|+|||++||||.
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~~~G~l~~~-~~----~~~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPDANGTLNAN-PV----RSELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEECCCCeEEec-Cc----HHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 689999998642 368899999999999999999998765432 11 12445667788889999999999987
Q ss_pred CCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEE
Q psy10300 1225 DSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLS 1304 (1490)
Q Consensus 1225 ~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls 1304 (1490)
.+ .|+.++++++.|++||++|++++++|+|||||||||||.. .+++|..||++||++|++.+++|+
T Consensus 71 ~~---~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-----------~~~~~~~fv~~Lr~~l~~~~~~lt 136 (253)
T cd06545 71 PP---EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-----------TFGDYLVFIRALYAALKKEGKLLT 136 (253)
T ss_pred CC---cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-----------cHhHHHHHHHHHHHHHhhcCcEEE
Confidence 54 3777999999999999999999999999999999999861 178999999999999998899999
Q ss_pred EEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCC-CCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcCC-CCCcEE
Q psy10300 1305 AAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDK-KTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA-DRKKVI 1382 (1490)
Q Consensus 1305 ~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~-~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~-p~~Klv 1382 (1490)
+++++... .+...++.++||||+||+||+||+|.. .+|+++|+.+ ++..+++|+..|+ |++||+
T Consensus 137 ~av~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~~----------~~~~v~~~~~~g~ip~~Klv 202 (253)
T cd06545 137 AAVSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYDD----------AVNDLNYWNERGLASKDKLV 202 (253)
T ss_pred EEccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchHh----------HHHHHHHHHHcCCCCHHHEE
Confidence 99876432 223456789999999999999999864 5899998764 7889999999998 999999
Q ss_pred EEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeCCEEEEEcCH
Q psy10300 1383 FGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQ 1462 (1490)
Q Consensus 1383 lGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~~~~~v~ydd~ 1462 (1490)
||||+||+.| +|+.+
T Consensus 203 lGlp~YG~~w-----------------------------------------------------------------~~~~~ 217 (253)
T cd06545 203 LGLPFYGYGF-----------------------------------------------------------------YYNGI 217 (253)
T ss_pred EEeCCccccc-----------------------------------------------------------------cCCCH
Confidence 9999999887 35677
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecCCCC
Q psy10300 1463 AMIHHKAEFVKYNDLGGAMIWALDLDD 1489 (1490)
Q Consensus 1463 ~Sl~~K~~~~~~~gLgGi~iW~l~~DD 1489 (1490)
.+++.|++|++++ +||+|+|++++|.
T Consensus 218 ~~~~~~~~~~~~~-~gG~~~w~~~~d~ 243 (253)
T cd06545 218 PTIRNKVAFAKQN-YGGVMIWELSQDA 243 (253)
T ss_pred HHHHHHHHHHHHh-cCeEEEEeccCCC
Confidence 8999999999999 9999999999995
No 25
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1.2e-40 Score=392.47 Aligned_cols=285 Identities=18% Similarity=0.296 Sum_probs=229.2
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEec
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVK 204 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvG 204 (1490)
+|++||..|...--...+- -.+..|||++.++.|++++. +... . ..++..+.+++ ++|||++||
T Consensus 3 ~~~g~~~~~~~~~~~~~~~-----~~~~lt~v~p~w~~~~~~g~-~~~~---~------~~~~~~~a~~~-~~kv~~~i~ 66 (313)
T cd02874 3 EVLGYYTPRNGSDYESLRA-----NAPYLTYIAPFWYGVDADGT-LTGL---P------DERLIEAAKRR-GVKPLLVIT 66 (313)
T ss_pred eEEEEEecCCCchHHHHHH-----hcCCCCEEEEEEEEEcCCCC-CCCC---C------CHHHHHHHHHC-CCeEEEEEe
Confidence 5889999886530011111 13456999999999988764 2221 1 12333333333 899999998
Q ss_pred c---------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHh
Q psy10300 205 S---------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLR 275 (1490)
Q Consensus 205 g---------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~ 275 (1490)
| .|+.+++++..|++||+++++||++|||||||||||++. ++++++|+.||++||.+|+
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~------------~~d~~~~~~fl~~lr~~l~ 134 (313)
T cd02874 67 NLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP------------PEDREAYTQFLRELSDRLH 134 (313)
T ss_pred cCCCCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC------------HHHHHHHHHHHHHHHHHhh
Confidence 6 368899999999999999999999999999999999874 3588999999999999999
Q ss_pred hcCcEEEEEecccccc-----cccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHH
Q psy10300 276 RNNYQLTLTSPGVIDR-----KTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350 (1490)
Q Consensus 276 ~~~~~ls~~v~~~~~~-----~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~ 350 (1490)
+++++|++++++.... ....||+++|++++|||+||+||+|+.| ..+ |++||+. .++..++
T Consensus 135 ~~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~~--~~~---gp~a~~~---------~~~~~~~ 200 (313)
T cd02874 135 PAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRG--GPP---GPVAPIG---------WVERVLQ 200 (313)
T ss_pred hcCcEEEEEecCccccccccccccccCHHHHHhhCCEEEEEEeccCCCC--CCC---CccCChH---------HHHHHHH
Confidence 9999999988765421 2367999999999999999999999988 345 7888872 4677777
Q ss_pred HHHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CCcee
Q psy10300 351 NWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GEPFM 429 (1490)
Q Consensus 351 ~~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~py~ 429 (1490)
+++ .|+|++||+|||||||+.|++.+.. ....+.++|.|+|+++++.++...||+. ++||.
T Consensus 201 ~~~-~gvp~~KlvlGip~YG~~w~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 262 (313)
T cd02874 201 YAV-TQIPREKILLGIPLYGYDWTLPYKK-----------------GGKASTISPQQAINLAKRYGAEIQYDEEAQSPFF 262 (313)
T ss_pred HHH-hcCCHHHEEEeecccccccccCCCC-----------------CcCccccCHHHHHHHHHHcCCCeEECcccCCCcE
Confidence 665 8999999999999999999975411 0123568899999999888999999988 88886
Q ss_pred Ee-C----CeEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCC
Q psy10300 430 VK-K----DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469 (1490)
Q Consensus 430 ~~-~----~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf 469 (1490)
.. . .+||+|||++||+.|++|++++||||+++|+|++||.
T Consensus 263 ~y~~~~g~~~~v~y~d~~Si~~K~~~~~~~~lgGv~iW~lg~dD~ 307 (313)
T cd02874 263 RYVDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLEDP 307 (313)
T ss_pred EEEeCCCCEEEEEeCcHHHHHHHHHHHHHcCCCeEEEEECCCCCc
Confidence 43 2 3599999999999999999999999999999999994
No 26
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1.3e-40 Score=386.92 Aligned_cols=287 Identities=20% Similarity=0.267 Sum_probs=224.7
Q ss_pred EEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCC--cEEEEEEcC
Q psy10300 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG--VKVTLAIGG 1222 (1490)
Q Consensus 1145 vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g--~KvllsiGG 1222 (1490)
++|||++|+. ..+.......+++|||++.|+.+....+.+... .+......++.+|+++ ++++..++|
T Consensus 2 ~l~~~~~w~~-----~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~-----~d~~~~~~~~~~k~~~~~l~~~~~~~~ 71 (298)
T cd06549 2 ALAFYTPWDD-----ASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVF-----VDPQGVAIIAAAKAHPKVLPLVQNISG 71 (298)
T ss_pred eeEEEecCCh-----hhHHHHHHhhccCCEEeceeEEEecCCCceecc-----CChHHHHHHHHHHcCCceeEEEEecCC
Confidence 7899999962 234444455678999999999998443333221 1122333455555443 677778887
Q ss_pred cCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcE
Q psy10300 1223 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLL 1302 (1490)
Q Consensus 1223 ~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ 1302 (1490)
+..+ +..|+.++++++.|++||++|++++++|+|||||||||++. ++++++|+.||++||++|++.+++
T Consensus 72 ~~~~-~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~----------~~d~~~~~~fl~eL~~~l~~~~~~ 140 (298)
T cd06549 72 GAWD-GKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP----------ADDLPKYVAFLSELRRRLPAQGKQ 140 (298)
T ss_pred CCCC-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC----------hhHHHHHHHHHHHHHHHhhhcCcE
Confidence 6544 25699999999999999999999999999999999999764 678999999999999999998999
Q ss_pred EEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcCCCCCcEE
Q psy10300 1303 LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVI 1382 (1490)
Q Consensus 1303 ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~p~~Klv 1382 (1490)
|++++++.. ..||++.|.+++|+|+||+||+|+.++ .+|+.+|+.+ ++..+++. ..|+|++||+
T Consensus 141 lsv~v~~~~----~~~d~~~l~~~~D~v~lMtYD~~~~~~-~~gp~a~~~~----------~~~~~~~~-~~~vp~~Klv 204 (298)
T cd06549 141 LTVTVPADE----ADWNLKALARNADKLILMAYDEHYQGG-APGPIASQDW----------FESNLAQA-VKKLPPEKLI 204 (298)
T ss_pred EEEEecCCC----CCCCHHHHHHhCCEEEEEEeccCCCCC-CCCCCCChhh----------HHHHHHHH-HhCCCHHHEE
Confidence 999998764 458999999999999999999998754 4666666543 55566664 4689999999
Q ss_pred EEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEeeC----CEEEE
Q psy10300 1383 FGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKG----DQWVG 1458 (1490)
Q Consensus 1383 lGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~~~----~~~v~ 1458 (1490)
||||+||+.|++.... ..++..+...++.+.+..+.||+......|.|.+ .|+||
T Consensus 205 lGip~YG~~w~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw 263 (298)
T cd06549 205 VALGSYGYDWTKGGNT---------------------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVW 263 (298)
T ss_pred EEecccCccccCCCCC---------------------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEE
Confidence 9999999999753210 1233455555566777888898877666676632 37999
Q ss_pred EcCHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q psy10300 1459 FDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489 (1490)
Q Consensus 1459 ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD 1489 (1490)
|||.+|++.|+++|+++||||+++|+||+||
T Consensus 264 ~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed 294 (298)
T cd06549 264 MLDAVTLFNQLKAVQRLGPAGVALWRLGSED 294 (298)
T ss_pred eccHHHHHHHHHHHHHcCCCcEEEEeccCCC
Confidence 9999999999999999999999999999998
No 27
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=1.3e-39 Score=370.92 Aligned_cols=250 Identities=24% Similarity=0.414 Sum_probs=199.7
Q ss_pred EEEEEccCCccCCCCCCCCCCCCCCCCccEEEEEEEEEeCCCcEEEcCCchhhhhHHHHHHHHHHHhCCCeEEEEEeCCC
Q psy10300 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWN 831 (1490)
Q Consensus 752 vvgY~~~W~~~~~g~~~~~~~~i~~~~~ThIi~aFa~~~~~~~~i~~~d~~~~~~~~~~~~i~~~k~~g~KvllSiGG~~ 831 (1490)
|||||.+|+.+. ..+++++.++||||+++|+.++ .+|.+...+... .+...+..+|++|+|||+|||||.
T Consensus 1 vigyy~~w~~~~-----~~~~~~~~~~lThv~~~f~~i~-~~G~l~~~~~~~----~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLN-----ALSPTIDFSKLTHINLAFANPD-ANGTLNANPVRS----ELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCccccc-----CCcccCChhhCCeEEEEEEEEC-CCCeEEecCcHH----HHHHHHHHHHhCCCEEEEEEcCCC
Confidence 689999998542 3688999999999999999998 455666554322 334557788889999999999987
Q ss_pred CCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEE
Q psy10300 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLS 911 (1490)
Q Consensus 832 ~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls 911 (1490)
.+ .|..+++++++|++|++++++++++|+|||||||||+|.. .+++|..|+++||++|++.+++|+
T Consensus 71 ~~---~~~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-----------~~~~~~~fv~~Lr~~l~~~~~~lt 136 (253)
T cd06545 71 PP---EFTAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-----------TFGDYLVFIRALYAALKKEGKLLT 136 (253)
T ss_pred CC---cchhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-----------cHhHHHHHHHHHHHHHhhcCcEEE
Confidence 54 3677999999999999999999999999999999999861 278999999999999998889999
Q ss_pred EEECCChhhHhhhcChhhhcccCceEEeeccccCCCCCC-CCCCCCCCCCCCCCCccccCHHHHHHHHHHcCC-CCCCeE
Q psy10300 912 AAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDK-KTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGA-PSRKLV 989 (1490)
Q Consensus 912 ~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD~~g~w~~-~~g~~apl~~~~~~~~~~~~~~~~v~~~~~~G~-p~~Klv 989 (1490)
+++++... .+...++.+++||||||+||+||.|.. .+|+++|+. +++..+++|+..|+ |++||+
T Consensus 137 ~av~~~~~----~~~~~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~----------~~~~~v~~~~~~g~ip~~Klv 202 (253)
T cd06545 137 AAVSSWNG----GAVSDSTLAYFDFINIMSYDATGPWWGDNPGQHSSYD----------DAVNDLNYWNERGLASKDKLV 202 (253)
T ss_pred EEccCccc----ccccHHHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH----------hHHHHHHHHHHcCCCCHHHEE
Confidence 99875422 223456788999999999999999964 588888865 37889999999998 999999
Q ss_pred EEeeccccceeccCCCCCCCCCCCCCCcccc-hhhHHHhhcCCccEEEecccCCCCCCCCCCCCCchHHHh
Q psy10300 990 MGMPMYGQAFSLANSNDHGLNAAAPGAGVHP-LLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTS 1059 (1490)
Q Consensus 990 lGlp~yG~~~~~~~~~~~g~~~~~~g~g~y~-~~~yi~~~~~lGG~m~W~l~~Dd~~~~c~~~~~~ll~~i 1059 (1490)
||||+|||+|.... ..... .+.|. +++ |||+|+|+++.|.. ...+|+.+|
T Consensus 203 lGlp~YG~~w~~~~------------~~~~~~~~~~~-~~~-~gG~~~w~~~~d~~------~~~~l~~~~ 253 (253)
T cd06545 203 LGLPFYGYGFYYNG------------IPTIRNKVAFA-KQN-YGGVMIWELSQDAS------GENSLLNAI 253 (253)
T ss_pred EEeCCccccccCCC------------HHHHHHHHHHH-HHh-cCeEEEEeccCCCC------CCcchhhcC
Confidence 99999999993211 11100 12233 455 99999999999973 345787764
No 28
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=5.9e-36 Score=348.01 Aligned_cols=282 Identities=14% Similarity=0.181 Sum_probs=211.8
Q ss_pred EEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEecc
Q psy10300 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKS 205 (1490)
Q Consensus 126 vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvGg 205 (1490)
+++||..|.-. + +.--.--....|||+..+..+...+..+.. . .+....+.+..+|+++|.++++..++|
T Consensus 2 ~l~~~~~w~~~--s---~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~---~--~d~~~~~~~~~~k~~~~~l~~~~~~~~ 71 (298)
T cd06549 2 ALAFYTPWDDA--S---FASLKRHAPRLDWLVPEWLNLTGPEGRIDV---F--VDPQGVAIIAAAKAHPKVLPLVQNISG 71 (298)
T ss_pred eeEEEecCChh--h---HHHHHHhhccCCEEeceeEEEecCCCceec---c--CChHHHHHHHHHHcCCceeEEEEecCC
Confidence 67999988321 1 111111124579999999988743333332 1 112233456678888899999999875
Q ss_pred ------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCc
Q psy10300 206 ------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNY 279 (1490)
Q Consensus 206 ------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~ 279 (1490)
.|+.+++++..|++||+++++++++|+||||+||||++. ++|+++|+.||+|||++|+++++
T Consensus 72 ~~~~~~~~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~------------~~d~~~~~~fl~eL~~~l~~~~~ 139 (298)
T cd06549 72 GAWDGKNIARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP------------ADDLPKYVAFLSELRRRLPAQGK 139 (298)
T ss_pred CCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC------------hhHHHHHHHHHHHHHHHhhhcCc
Confidence 479999999999999999999999999999999999874 45899999999999999999999
Q ss_pred EEEEEecccccccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHHHHHcCCCC
Q psy10300 280 QLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARP 359 (1490)
Q Consensus 280 ~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~~~~g~~~ 359 (1490)
+|+++||+.. ..||+++|++++|+|+||+||+|+.+ +++.|+... ..++..+++. ..|+|+
T Consensus 140 ~lsv~v~~~~----~~~d~~~l~~~~D~v~lMtYD~~~~~--------~~~gp~a~~------~~~~~~~~~~-~~~vp~ 200 (298)
T cd06549 140 QLTVTVPADE----ADWNLKALARNADKLILMAYDEHYQG--------GAPGPIASQ------DWFESNLAQA-VKKLPP 200 (298)
T ss_pred EEEEEecCCC----CCCCHHHHHHhCCEEEEEEeccCCCC--------CCCCCCCCh------hhHHHHHHHH-HhCCCH
Confidence 9999998754 36999999999999999999999877 233444221 1244555543 479999
Q ss_pred CcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCC-CCCc-eeEeC--C--
Q psy10300 360 EQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDS-NGEP-FMVKK--D-- 433 (1490)
Q Consensus 360 ~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~-~~~p-y~~~~--~-- 433 (1490)
+||+|||||||+.|++.... ..+++.+...++.+.+....||+ +..| |.+.. +
T Consensus 201 ~KlvlGip~YG~~w~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 259 (298)
T cd06549 201 EKLIVALGSYGYDWTKGGNT---------------------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVS 259 (298)
T ss_pred HHEEEEecccCccccCCCCC---------------------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcE
Confidence 99999999999999874310 01234455554555555555544 4445 45532 2
Q ss_pred eEEEecChHHHHHHHHHHHHcCcceEEEEcCCCCCC
Q psy10300 434 EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469 (1490)
Q Consensus 434 ~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf 469 (1490)
.+|+|||++|++.|+++|++.||||+++|+|++||.
T Consensus 260 h~Vw~~d~~Sl~~K~~~a~~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 260 HEVWMLDAVTLFNQLKAVQRLGPAGVALWRLGSEDP 295 (298)
T ss_pred EEEEeccHHHHHHHHHHHHHcCCCcEEEEeccCCCC
Confidence 489999999999999999999999999999999984
No 29
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=2e-33 Score=317.51 Aligned_cols=206 Identities=19% Similarity=0.319 Sum_probs=160.6
Q ss_pred EEEEEEccCCccCCCCCC-CCCCCCCCCCccEEEEEEEEEeCCCcEEEcCCchhhhh--HHHHHHHHHHHhCCCeEEEEE
Q psy10300 751 KIVCYFTNWAWYRPGKGK-YVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFD--NRFYERVVTLKKKGVKVSLAI 827 (1490)
Q Consensus 751 ~vvgY~~~W~~~~~g~~~-~~~~~i~~~~~ThIi~aFa~~~~~~~~i~~~d~~~~~~--~~~~~~i~~~k~~g~KvllSi 827 (1490)
|+||||++|..++.+... +.+..++..+||||+|||+.++. ++.+...+.+.+.. .++.++|+.||++|+||||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~-~G~l~~~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHIND-DGNIHLNDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECC-CCeEEECCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 689999999877654333 33446778899999999999985 66777776654332 367889999999999999999
Q ss_pred eCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCC
Q psy10300 828 GGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG 907 (1490)
Q Consensus 828 GG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~ 907 (1490)
|||+.+ .|+.++++++.|++|++++++++++|+|||||||||||. +..+|+.||++||++|++ +
T Consensus 80 GG~~~~---~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~------------~~~~~~~ll~~Lr~~~~~-~ 143 (256)
T cd06546 80 GGAAPG---SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM------------SLDGIIRLIDRLRSDFGP-D 143 (256)
T ss_pred CCCCCC---CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC------------CHhHHHHHHHHHHHHhCC-C
Confidence 999743 388888999999999999999999999999999999985 346899999999999965 5
Q ss_pred ceEEEEECCC----hhhHhhhcChhhhc----ccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHHHHHHHH
Q psy10300 908 LLLSAAVSPS----KQVINAAYDVKALS----ESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWM 979 (1490)
Q Consensus 908 ~~ls~a~~~~----~~~~~~~~~~~~l~----~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~ 979 (1490)
++||+|+.+. ......++++..+. .++||+|+|.||.+|... +.. ....|+
T Consensus 144 ~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------------------~~~-~~~~~~ 202 (256)
T cd06546 144 FIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------------------SPS-DYDAIV 202 (256)
T ss_pred cEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------------------CHH-HHHHHH
Confidence 8888875432 11222356776654 599999999999876421 011 233456
Q ss_pred HcCCCCCCeEEEeec
Q psy10300 980 KKGAPSRKLVMGMPM 994 (1490)
Q Consensus 980 ~~G~p~~KlvlGlp~ 994 (1490)
..|+|++||+||+|+
T Consensus 203 ~~~~~~~Kv~iGlpa 217 (256)
T cd06546 203 AQGWDPERIVIGLLT 217 (256)
T ss_pred HcCCCcccEEEEEec
Confidence 678999999999996
No 30
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=2.4e-32 Score=304.11 Aligned_cols=175 Identities=37% Similarity=0.742 Sum_probs=145.5
Q ss_pred EEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcC--CcEEEEEEcC
Q psy10300 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGG 1222 (1490)
Q Consensus 1145 vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~--g~KvllsiGG 1222 (1490)
|||||.+|+.++.. .+..++.++||||+|+|+.++.++......+. ........++.++++ |+||++||||
T Consensus 1 vv~y~~~w~~~~~~----~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~---~~~~~~~~i~~l~~~~~g~kv~~sigg 73 (210)
T cd00598 1 VICYYDGWSSGRGP----DPTDIPLSLCTHIIYAFAEISSDGSLNLFGDK---SEEPLKGALEELASKKPGLKVLISIGG 73 (210)
T ss_pred CEEEEccccccCCC----ChhhCCcccCCEEEEeeEEECCCCCEecccCc---ccHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 68999999976532 27889999999999999999998876542221 223345667777765 9999999999
Q ss_pred cCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcE
Q psy10300 1223 WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLL 1302 (1490)
Q Consensus 1223 ~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ 1302 (1490)
|.... .+ .++.+++.|++|++++++++++|+|||||||||+|... ...++++|+.||++||++|++++++
T Consensus 74 ~~~~~--~~-~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~-------~~~~~~~~~~ll~~lr~~l~~~~~~ 143 (210)
T cd00598 74 WTDSS--PF-TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAA-------DNSDRENFITLLRELRSALGAANYL 143 (210)
T ss_pred CCCCC--Cc-hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCc-------CccHHHHHHHHHHHHHHHhcccCcE
Confidence 98763 34 78999999999999999999999999999999998721 1146899999999999999988999
Q ss_pred EEEEeCCChhhhhccCChhhhcccCcEEEEeecc
Q psy10300 1303 LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYD 1336 (1490)
Q Consensus 1303 ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD 1336 (1490)
|++++++.......+|++.++.+++|||+||+||
T Consensus 144 ls~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 144 LTIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EEEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 9999998876554458999999999999999999
No 31
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=2.6e-32 Score=303.89 Aligned_cols=173 Identities=27% Similarity=0.467 Sum_probs=146.1
Q ss_pred EEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEecc
Q psy10300 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKS 205 (1490)
Q Consensus 126 vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvGg 205 (1490)
|||||.+|+.++.+. ++.++..+||||||+|+.++.++......+.. .......+..||+++|++|||++|||
T Consensus 1 vv~y~~~w~~~~~~~----~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~---~~~~~~~i~~l~~~~~g~kv~~sigg 73 (210)
T cd00598 1 VICYYDGWSSGRGPD----PTDIPLSLCTHIIYAFAEISSDGSLNLFGDKS---EEPLKGALEELASKKPGLKVLISIGG 73 (210)
T ss_pred CEEEEccccccCCCC----hhhCCcccCCEEEEeeEEECCCCCEecccCcc---cHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 689999999987654 89999999999999999999877544322211 12346678889998999999999998
Q ss_pred ----chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcEE
Q psy10300 206 ----NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQL 281 (1490)
Q Consensus 206 ----~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~l 281 (1490)
....+++++..|++|++++++++++|+|||||||||+|...+ ..++++|+.||++||++|++++++|
T Consensus 74 ~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~---------~~~~~~~~~ll~~lr~~l~~~~~~l 144 (210)
T cd00598 74 WTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAAD---------NSDRENFITLLRELRSALGAANYLL 144 (210)
T ss_pred CCCCCCchhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcC---------ccHHHHHHHHHHHHHHHhcccCcEE
Confidence 122688999999999999999999999999999999997542 1468999999999999999989999
Q ss_pred EEEecccccccccccChhhhcccceeeeeeccc
Q psy10300 282 TLTSPGVIDRKTSLVDISVVAPLVDLILLKSFN 314 (1490)
Q Consensus 282 s~~v~~~~~~~~~~yd~~~l~~~vD~i~lmtyd 314 (1490)
++++++........|++.++.+++|||+||+||
T Consensus 145 s~a~~~~~~~~~~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 145 TIAVPASYFDLGYAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred EEEecCChHHhhccCCHHHHHhhCCEEEEeeec
Confidence 999998765444469999999999999999997
No 32
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=2.8e-32 Score=319.08 Aligned_cols=221 Identities=22% Similarity=0.339 Sum_probs=159.4
Q ss_pred cEEEEEEccCCccCCCCCCCCCCCCCCCCccEEEEEEEEEeCCCc-EEEcC---CchhhhhHHHHHHHHHHHhCCCeEEE
Q psy10300 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENL-IIKAH---DSWADFDNRFYERVVTLKKKGVKVSL 825 (1490)
Q Consensus 750 ~~vvgY~~~W~~~~~g~~~~~~~~i~~~~~ThIi~aFa~~~~~~~-~i~~~---d~~~~~~~~~~~~i~~~k~~g~Kvll 825 (1490)
++++|||++|+.++.+.. +.++.+ .+.||||++||+.++..+. .+.+. ........++.++|+.+|++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~-~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-QDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCC-CCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEEE
Confidence 589999999998876533 344444 4899999999999985432 22211 11112235678899999999999999
Q ss_pred EEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCC
Q psy10300 826 AIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKP 905 (1490)
Q Consensus 826 SiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~ 905 (1490)
|||||.++. ++.+++.|++|++++++++++|+|||||||||+|... .....++.+|+.||++||++|++
T Consensus 79 SiGG~~~~~------~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~-----~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 79 SIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNP-----LNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred EEeCCCCcc------ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCcc-----CCcHHHHHHHHHHHHHHHHHcCC
Confidence 999997542 3778899999999999999999999999999998621 11246889999999999999976
Q ss_pred CCceEEEEECCChhhHh----------hhc--ChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHH
Q psy10300 906 HGLLLSAAVSPSKQVIN----------AAY--DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANF 973 (1490)
Q Consensus 906 ~~~~ls~a~~~~~~~~~----------~~~--~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~ 973 (1490)
+++||+|+ .+.... ..| .+.++..++||||||+||.+|.+. ....-+. . ...+...
T Consensus 148 -~~~lT~AP--~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~----~~~~~~~-~----~~~~~~~ 215 (312)
T cd02871 148 -NFILTMAP--ETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG----CDGQSYS-Q----GTADFLV 215 (312)
T ss_pred -CeEEEECC--CcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc----ccccCCc-c----chhHHHH
Confidence 79999984 333332 122 367788899999999999887531 1111111 0 0112334
Q ss_pred HHHHHHHcC-----------CCCCCeEEEeecc
Q psy10300 974 TMNYWMKKG-----------APSRKLVMGMPMY 995 (1490)
Q Consensus 974 ~v~~~~~~G-----------~p~~KlvlGlp~y 995 (1490)
++..++.+| +|++||+||+|+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 216 ALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 444455555 8999999999974
No 33
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=295.17 Aligned_cols=247 Identities=22% Similarity=0.380 Sum_probs=203.0
Q ss_pred HHHHHhcCCcEEEEEEcCcC----CCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCcc
Q psy10300 1205 KVTALKKKGVKVTLAIGGWN----DSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280 (1490)
Q Consensus 1205 ~i~~~k~~g~KvllsiGG~~----~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~ 1280 (1490)
.+...+.+++|.++.+...+ +..++.++.+++++..++++++++++.++++|+.||.||+| .+.+.
T Consensus 152 ~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE----------~v~~~ 221 (423)
T COG3858 152 VIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFE----------NVGPG 221 (423)
T ss_pred hhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechh----------hCCHH
Confidence 35556777888888775433 11134569999999999999999999999999999999999 56789
Q ss_pred chhhHHHHHHHHHHhcCCCCcEEEEEeCCChh-----hhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCC
Q psy10300 1281 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKA-----VIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~-----~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~ 1355 (1490)
|++.|..|++++|++|++.|+.+++|++|... .+...||+..+++++|||.||+||.|..| ..+|+.||+.|
T Consensus 222 DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~~-- 298 (423)
T COG3858 222 DRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG-GPPGPVASIGW-- 298 (423)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC-CCCCcccCchh--
Confidence 99999999999999999999999999998542 24467899999999999999999999986 66899999887
Q ss_pred CCCCCCcCHHHHHHHHHHcCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCC
Q psy10300 1356 NDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDG 1435 (1490)
Q Consensus 1356 ~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~ 1435 (1490)
++..+++.+.. +|++||+||+|+||++|.+..... |... +. ++..+-.++....+
T Consensus 299 --------vr~~ieya~T~-iP~~Kv~mGip~YGYDW~~~y~~~-------------g~~~--~a-~~~~~~i~ia~~y~ 353 (423)
T COG3858 299 --------VRKVIEYALTV-IPAEKVMMGIPLYGYDWTLPYDPL-------------GYLA--RA-ISPDEAIDIANRYN 353 (423)
T ss_pred --------Hhhhhhhhhee-cchHHeEEccccccccccCCCCCC-------------ccee--ee-cCcchhhhhhcccC
Confidence 77778887775 999999999999999998643311 1111 11 33344444556667
Q ss_pred cEEEEcCCCceeeEEee---C-CEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCCCC
Q psy10300 1436 WVVVRDRKRRIGPYAFK---G-DQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489 (1490)
Q Consensus 1436 ~~~~~D~~~~~~~y~~~---~-~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~DD 1489 (1490)
.++.||...+...|.|. + .|+|||||.+|++.|++++|++||.||++|.|+++|
T Consensus 354 A~Iq~D~~~qsp~F~y~D~eg~~h~VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~ 411 (423)
T COG3858 354 ATIQYDATSQSPFFYYVDKEGRYHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQED 411 (423)
T ss_pred CccCcCccccCceEEEEcCCCceEEEEcCchHHHHHHHHHHHHcCCceEEEEEecCcc
Confidence 88999998887667663 3 589999999999999999999999999999999987
No 34
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.97 E-value=1.2e-30 Score=292.44 Aligned_cols=231 Identities=17% Similarity=0.189 Sum_probs=166.2
Q ss_pred CCCCCCCCCC--ccEEEEEEEE-EeC----CCcEEEcCCchhhhhHHHHHHHHHHHhC--CCeEEEEEeCCCCCCCcchh
Q psy10300 769 YVPEDIRTDL--CTHIVYGFAV-LDS----ENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYS 839 (1490)
Q Consensus 769 ~~~~~i~~~~--~ThIi~aFa~-~~~----~~~~i~~~d~~~~~~~~~~~~i~~~k~~--g~KvllSiGG~~~s~~~~f~ 839 (1490)
.++++||.+. ||||+||||. .+. .++... ..| +.....++++..+|++ ++|||||||||+.+.+..+.
T Consensus 13 ~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~ 89 (253)
T cd06544 13 VTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFN--PYW-DTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPF 89 (253)
T ss_pred ccccccCCCCCeeEEEEEEeeeecccccCCCCCccc--ccc-CccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCcccc
Confidence 4689999988 9999999994 322 133332 234 2334457788888886 69999999999875322333
Q ss_pred hhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChh
Q psy10300 840 RLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQ 919 (1490)
Q Consensus 840 ~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~ 919 (1490)
...+....|++||+++++||++|||||||||||||. .++++|+.||++||++|+++++++.++++|...
T Consensus 90 ~~~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-----------~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~ 158 (253)
T cd06544 90 DPSNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-----------ADPDTFVECIGQLITELKNNGVIKVASIAPSED 158 (253)
T ss_pred CchhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC-----------cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcc
Confidence 344555566778999999999999999999999984 468999999999999999888666666666544
Q ss_pred hHhhhcChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHHHHHHHHHcCCCCCCeEEEeeccccce
Q psy10300 920 VINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999 (1490)
Q Consensus 920 ~~~~~~~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~~~G~p~~KlvlGlp~yG~~~ 999 (1490)
.. ..++++.+.+++|+|++|+||+++.+... ... ........|. .++|++||++|+|++++.|
T Consensus 159 ~~-~~~y~~~~~~~~d~id~~~~qfy~~~~~~------------~~~---~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~ 221 (253)
T cd06544 159 AE-QSHYLALYNAYGDYIDYVNYQFYNYGVPT------------TVA---KYVEFYDEVA-NNYPGKKVLASFSTDGEDG 221 (253)
T ss_pred cc-ccccHHHHHHhhCceeEEEhhhhCCCCCC------------CHH---HHHHHHHHHH-hCCCcccEEEEEecCCCcc
Confidence 32 34568889999999999999999874321 000 1122344443 5699999999999999877
Q ss_pred eccCCCCCCCCCCCCCCcccchhhHHHhhcCCccEEEecccC
Q psy10300 1000 SLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTT 1041 (1490)
Q Consensus 1000 ~~~~~~~~g~~~~~~g~g~y~~~~yi~~~~~lGG~m~W~l~~ 1041 (1490)
....+. .-+..+..++++.++||+|+|++++
T Consensus 222 ~~v~~~-----------~~~~~lp~l~~~~~~gGvm~W~~~~ 252 (253)
T cd06544 222 ANIPGE-----------IFIGGCKRLKKNGSLPGVFIWNADD 252 (253)
T ss_pred CcCChH-----------HhhhhchHhhhCCCCCeEEEEecCC
Confidence 411100 0122344566777999999999875
No 35
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.97 E-value=7.5e-30 Score=288.38 Aligned_cols=206 Identities=22% Similarity=0.355 Sum_probs=157.4
Q ss_pred EEEEEEccCccccCCCCC-CCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcch--hhHHHHHHHHHHhcCCcEEEEEE
Q psy10300 1144 KIVCYFTNWAWYRQSGGK-YLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWAD--LDNKFYEKVTALKKKGVKVTLAI 1220 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~-~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~--~~~~~~~~i~~~k~~g~Kvllsi 1220 (1490)
|+||||++|..++..... +.+..++..+||||+|+|+.++.+|.+.. .+.+.+ ....+.+.++.+|++|+||||||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~-~d~~~~~~~~~~~~~~i~~~~~~g~KVllSi 79 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHL-NDHPPDHPRFTTLWTELAILQSSGVKVMGML 79 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEE-CCCCCCcchhhHHHHHHHHHHhCCCEEEEEE
Confidence 689999999866553323 33446778999999999999998775433 333322 22367788889999999999999
Q ss_pred cCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCC
Q psy10300 1221 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD 1300 (1490)
Q Consensus 1221 GG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~ 1300 (1490)
|||..+ .|+.++++++.|++|++++++++++|+|||||||||||. +..+|+.||++||++|++ +
T Consensus 80 GG~~~~---~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~------------~~~~~~~ll~~Lr~~~~~-~ 143 (256)
T cd06546 80 GGAAPG---SFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM------------SLDGIIRLIDRLRSDFGP-D 143 (256)
T ss_pred CCCCCC---CcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC------------CHhHHHHHHHHHHHHhCC-C
Confidence 999753 388888899999999999999999999999999999985 346999999999999964 5
Q ss_pred cEEEEEeCCC----hhhhhccCChhhhc----ccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHH
Q psy10300 1301 LLLSAAVSPS----KAVIDNAYDIPVMS----ENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWV 1372 (1490)
Q Consensus 1301 ~~ls~av~~~----~~~~~~~~d~~~l~----~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~ 1372 (1490)
++|+++.... ......++++.++. .++||+|+|.||.+|... +. .....|+
T Consensus 144 ~~lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~~~--------------------~~-~~~~~~~ 202 (256)
T cd06546 144 FIITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGSMS--------------------SP-SDYDAIV 202 (256)
T ss_pred cEEEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCCcc--------------------CH-HHHHHHH
Confidence 7888875432 11122356776664 599999999999876411 01 1234566
Q ss_pred HcCCCCCcEEEEeec
Q psy10300 1373 SHGADRKKVIFGMPM 1387 (1490)
Q Consensus 1373 ~~g~p~~KlvlGlp~ 1387 (1490)
..++|++||+||+|.
T Consensus 203 ~~~~~~~Kv~iGlpa 217 (256)
T cd06546 203 AQGWDPERIVIGLLT 217 (256)
T ss_pred HcCCCcccEEEEEec
Confidence 778999999999984
No 36
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.96 E-value=2.4e-29 Score=281.86 Aligned_cols=197 Identities=15% Similarity=0.145 Sum_probs=147.1
Q ss_pred cccCCCCCC--cceeeeeee-EEcCC-CCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEecc-ch--hhhhcCHH-
Q psy10300 144 NVKNVIPQI--CTHVIYAYA-AIDPV-SRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKS-NF--VSITSDRE- 215 (1490)
Q Consensus 144 ~~~~i~~~l--CTHiiy~~a-~i~~~-~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvGg-~f--s~~~~~~~- 215 (1490)
.+++||..+ ||||||+|| ..+.. ...-..+....|.....++++..||++||+||||||||| .+ +.+..++.
T Consensus 14 ~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~ 93 (253)
T cd06544 14 TFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSN 93 (253)
T ss_pred cccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchh
Confidence 589999888 999999999 44321 011122223334455689999999999999999999999 32 33444444
Q ss_pred ---HHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcEEEEEeccccccc
Q psy10300 216 ---SRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRK 292 (1490)
Q Consensus 216 ---~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~ls~~v~~~~~~~ 292 (1490)
.|++||+++++||++|||||||||||||. .|+++|+.||+|||++|+.+++++.+++.+.....
T Consensus 94 ~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~-------------~d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~ 160 (253)
T cd06544 94 VDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP-------------ADPDTFVECIGQLITELKNNGVIKVASIAPSEDAE 160 (253)
T ss_pred hhhHHHHHHHHHHHHHHHhCCCceeeecccCC-------------cCHHHHHHHHHHHHHHhhhcCCeEEEEecCCcccc
Confidence 44566999999999999999999999984 26899999999999999999877777777665433
Q ss_pred ccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHHHHHcCCCCCcEEEeeeeeeee
Q psy10300 293 TSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKS 372 (1490)
Q Consensus 293 ~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~~~~g~~~~Klvlgvp~yG~~ 372 (1490)
..+.++.+.+++|+|++|.||+++.+. + ... .......+.|. ++.|++||++|+|.+++.
T Consensus 161 -~~~y~~~~~~~~d~id~~~~qfy~~~~---~---~~~------------~~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~ 220 (253)
T cd06544 161 -QSHYLALYNAYGDYIDYVNYQFYNYGV---P---TTV------------AKYVEFYDEVA-NNYPGKKVLASFSTDGED 220 (253)
T ss_pred -ccccHHHHHHhhCceeEEEhhhhCCCC---C---CCH------------HHHHHHHHHHH-hCCCcccEEEEEecCCCc
Confidence 456689999999999999999997661 1 000 01123344453 579999999999999855
Q ss_pred E
Q psy10300 373 Y 373 (1490)
Q Consensus 373 ~ 373 (1490)
|
T Consensus 221 ~ 221 (253)
T cd06544 221 G 221 (253)
T ss_pred c
Confidence 4
No 37
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=99.96 E-value=2.6e-28 Score=285.63 Aligned_cols=221 Identities=24% Similarity=0.314 Sum_probs=158.2
Q ss_pred cEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEecc-C---CCcchhhHHHHHHHHHHhcCCcEEEE
Q psy10300 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKP-H---DTWADLDNKFYEKVTALKKKGVKVTL 1218 (1490)
Q Consensus 1143 ~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~-~---~~~~~~~~~~~~~i~~~k~~g~Kvll 1218 (1490)
++++|||++|+.++.+.. + +.+...++||||+++|+.++.++..... . .........+.+.|+.+|++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~-~-~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGR-Q-DLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCC-C-CcccCCCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHCCCEEEE
Confidence 589999999998876533 3 3344559999999999999876532211 0 01112335678889999999999999
Q ss_pred EEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC
Q psy10300 1219 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1219 siGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
|||||..+. ++.+++.|++|+++|++++++|+|||||||||+|... .....++.+|+.||++||++|++
T Consensus 79 SiGG~~~~~------~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~-----~~~~~~~~~~~~~lk~lr~~~~~ 147 (312)
T cd02871 79 SIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNP-----LNATPVITNLISALKQLKDHYGP 147 (312)
T ss_pred EEeCCCCcc------ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCcc-----CCcHHHHHHHHHHHHHHHHHcCC
Confidence 999997542 3778899999999999999999999999999998621 12246889999999999999975
Q ss_pred CCcEEEEEeCCChhhhh----------ccC--ChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHH
Q psy10300 1299 HDLLLSAAVSPSKAVID----------NAY--DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANY 1366 (1490)
Q Consensus 1299 ~~~~ls~av~~~~~~~~----------~~~--d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~ 1366 (1490)
+++||+|+... +.. ..| .+.++.+++|||+||.||.++.+. ... .... ....+...
T Consensus 148 -~~~lT~AP~~~--~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~~~----~~~-~~~~----~~~~~~~~ 215 (312)
T cd02871 148 -NFILTMAPETP--YVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGMGG----CDG-QSYS----QGTADFLV 215 (312)
T ss_pred -CeEEEECCCcc--cccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCccc----ccc-cCCc----cchhHHHH
Confidence 78999985322 221 123 356788899999999999887531 100 1110 11122333
Q ss_pred HHHHHHHcC-----------CCCCcEEEEeecc
Q psy10300 1367 SLHYWVSHG-----------ADRKKVIFGMPMY 1388 (1490)
Q Consensus 1367 ~v~~~~~~g-----------~p~~KlvlGlp~Y 1388 (1490)
++..++.+| +|++||+||+|..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 216 ALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 343344455 8999999999975
No 38
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.93 E-value=6.4e-25 Score=249.59 Aligned_cols=236 Identities=19% Similarity=0.245 Sum_probs=156.5
Q ss_pred EEEEEccCCccCCCCCCCCCCCCCCCCccEEEEEEEEEeCCCc--EEEcCC-chhhh---hHHHHHHHHHHHhCCCeEEE
Q psy10300 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENL--IIKAHD-SWADF---DNRFYERVVTLKKKGVKVSL 825 (1490)
Q Consensus 752 vvgY~~~W~~~~~g~~~~~~~~i~~~~~ThIi~aFa~~~~~~~--~i~~~d-~~~~~---~~~~~~~i~~~k~~g~Kvll 825 (1490)
|+.| |.++.. .....+.++...++.|+++|+.....++ .+.+.. ++... -.++.++|+.||++|+||||
T Consensus 3 v~vy---WGq~~~--~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlL 77 (280)
T cd02877 3 IAVY---WGQNSD--EGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLL 77 (280)
T ss_pred eEEE---CCCCCC--CCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEE
Confidence 6677 554432 2334456777789999999999875422 122211 11111 13678899999999999999
Q ss_pred EEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHH------------HcCCCeEEEeecCCCCCCCCCCCCCCchhhhHH
Q psy10300 826 AIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLL------------KYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFG 893 (1490)
Q Consensus 826 SiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~------------~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~ 893 (1490)
|||||..+.+ +.+++.|++|+++|++++. +++|||||||||+|. ..+|.
T Consensus 78 SIGG~~~~~~------~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~-------------~~~~~ 138 (280)
T cd02877 78 SIGGAGGSYS------LSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGS-------------PENYD 138 (280)
T ss_pred EccCCCCCcC------CCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCC-------------ccCHH
Confidence 9999986532 3789999999999998762 577999999999885 16799
Q ss_pred HHHHHHHHHhCC---CCceEEEEECCChhhHhhhcChhhhc-ccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCcccc
Q psy10300 894 LFVRELHQAFKP---HGLLLSAAVSPSKQVINAAYDVKALS-ESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYF 969 (1490)
Q Consensus 894 ~ll~eLr~~l~~---~~~~ls~a~~~~~~~~~~~~~~~~l~-~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~ 969 (1490)
.|+++||+.+++ ++++||+|+. +...+ .+....+. .++||||||+||..+- ....+...
T Consensus 139 ~l~~~LR~~~~~~~~~~~~LTaAPq--~~~~d-~~~~~~i~~~~~D~i~vqfYn~~~c-~~~~~~~~------------- 201 (280)
T cd02877 139 ALAKRLRSLFASDPSKKYYLTAAPQ--CPYPD-ASLGDAIATGLFDFIFVQFYNNPCC-SYASGNAS------------- 201 (280)
T ss_pred HHHHHHHHHhhcccCCceEEEeccc--cCCcc-hhHHHHHccCccCEEEEEEecCccc-cccccccc-------------
Confidence 999999999975 5689999843 33222 23344555 5999999999996532 11101011
Q ss_pred CHHHHHHHHHHcCCCC---CCeEEEeeccccceeccCCCCCCCCCCCCCCcccc------hhhH-HHhhcCCccEEEecc
Q psy10300 970 NANFTMNYWMKKGAPS---RKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHP------LLST-ITEVLGHGPGGNYES 1039 (1490)
Q Consensus 970 ~~~~~v~~~~~~G~p~---~KlvlGlp~yG~~~~~~~~~~~g~~~~~~g~g~y~------~~~y-i~~~~~lGG~m~W~l 1039 (1490)
......+.|+.. ++. +||+||||+.-. . .+.|-.+ .+.+ +.+..+|||||+|++
T Consensus 202 ~~~~~~~~w~~~-~~~~~~~kv~lGlpas~~--------a-------a~~Gyv~p~~l~~~v~~~~~~~~~fGGvM~Wd~ 265 (280)
T cd02877 202 GFNFNWDTWTSW-AKATSNAKVFLGLPASPE--------A-------AGSGYVDPSELASLVLPVKQKSPNFGGVMLWDA 265 (280)
T ss_pred hhhhHHHHHHHh-cccCCCceEEEecccCCC--------C-------CCCCccCHHHHHHHHHHHhhcCCCCcEEEEEhH
Confidence 122334455544 555 899999996311 0 1112111 2222 334448999999999
Q ss_pred cCCCC
Q psy10300 1040 TTEEY 1044 (1490)
Q Consensus 1040 ~~Dd~ 1044 (1490)
.+|..
T Consensus 266 ~~~~~ 270 (280)
T cd02877 266 SQDKQ 270 (280)
T ss_pred hhccC
Confidence 99873
No 39
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.93 E-value=4.4e-25 Score=250.06 Aligned_cols=221 Identities=16% Similarity=0.328 Sum_probs=179.2
Q ss_pred hhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcEEEEEec
Q psy10300 207 FVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 207 fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
.+.++.++..++++|+++++.|+++|+.|+.||+|. ..+.||+.|..|||++|++|++.|+.++++|+
T Consensus 182 a~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~------------v~~~DR~~yt~flR~~r~~l~~~G~~~siAva 249 (423)
T COG3858 182 AQLLLNNETAKNRLINNIITLLDARGYRGVNIDFEN------------VGPGDRELYTDFLRQVRDALHSGGYTVSIAVA 249 (423)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhh------------CCHHHHHHHHHHHHHHHHHhccCCeEEEEEec
Confidence 589999999999999999999999999999999994 34679999999999999999999999999999
Q ss_pred cccc-----ccccccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHHHHHcCCCCCc
Q psy10300 287 GVID-----RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQ 361 (1490)
Q Consensus 287 ~~~~-----~~~~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~~~~~g~~~~K 361 (1490)
+... .+...||+.++.+++|||.||+||-|..| ..+ |..||+ ..|+..+++-+. -+|++|
T Consensus 250 akt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~g--G~P---G~vA~i---------~~vr~~ieya~T-~iP~~K 314 (423)
T COG3858 250 AKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSG--GPP---GPVASI---------GWVRKVIEYALT-VIPAEK 314 (423)
T ss_pred CCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcCC--CCC---CcccCc---------hhHhhhhhhhhe-ecchHH
Confidence 8753 25688999999999999999999999888 444 566664 346666665544 799999
Q ss_pred EEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC-CCceeEe----C-CeE
Q psy10300 362 IIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN-GEPFMVK----K-DEW 435 (1490)
Q Consensus 362 lvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~-~~py~~~----~-~~w 435 (1490)
|+||||+||+.|.+.... .|..+.+ .++.|-.+....-+.+..||.. +.||.+. + ..|
T Consensus 315 v~mGip~YGYDW~~~y~~---~g~~~~a-------------~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D~eg~~h~ 378 (423)
T COG3858 315 VMMGIPLYGYDWTLPYDP---LGYLARA-------------ISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGRYHE 378 (423)
T ss_pred eEEccccccccccCCCCC---Ccceeee-------------cCcchhhhhhcccCCccCcCccccCceEEEEcCCCceEE
Confidence 999999999999985432 1222211 2223322223334467778888 7888863 2 449
Q ss_pred EEecChHHHHHHHHHHHHcCcceEEEEcCCCCCCC
Q psy10300 436 ITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFR 470 (1490)
Q Consensus 436 v~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~DDf~ 470 (1490)
|||||.+|+..|++++|+.||.||++|.|++.|-+
T Consensus 379 VWfeD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 379 VWFEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred EEcCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 99999999999999999999999999999999854
No 40
>KOG2091|consensus
Probab=99.93 E-value=4e-25 Score=236.98 Aligned_cols=296 Identities=20% Similarity=0.274 Sum_probs=231.4
Q ss_pred CCCcEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEE
Q psy10300 1140 KDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLA 1219 (1490)
Q Consensus 1140 ~~~~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~Kvlls 1219 (1490)
..+.-++||.++|+ ...|....+-.+++|||...|+.+...|..+.. ..-.+++..|.+.+++ +.++++++.-
T Consensus 76 ~f~~~vLayVTPWN-----s~Gydvakifaskft~iSPVW~ql~~qgs~~~v-~G~hdid~gwiralRk-~~~~l~ivPR 148 (392)
T KOG2091|consen 76 HFGGTVLAYVTPWN-----SHGYDVAKIFASKFTYISPVWLQLKDQGSDVGV-YGKHDIDPGWIRALRK-SGKDLHIVPR 148 (392)
T ss_pred ccCCceEEEecCcC-----ccchhHHHHHhcccceecchheeehhcCcceEE-eecccCChHHHHHHHH-hCCCceeece
Confidence 35677999999998 567899999999999999999999877643322 2235677777766655 4556776643
Q ss_pred --EcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcC
Q psy10300 1220 --IGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN 1297 (1490)
Q Consensus 1220 --iGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~ 1297 (1490)
+-.|.+ ..|..++.+++.|++..+.++++++++||||+.|+-.--- .....+ .....|++.|.++|+
T Consensus 149 ~~fd~~~~---~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~-------a~~i~d-~~al~~v~hl~k~Lh 217 (392)
T KOG2091|consen 149 FYFDEFTS---ADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQL-------ADVIAD-KDALELVEHLGKALH 217 (392)
T ss_pred ehhhhccc---hHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHH-------HHHHhh-hHHHHHHHHHHHHHH
Confidence 344543 4688999999999999999999999999999999754100 000112 344568889999999
Q ss_pred CCCcEEEEEeCCChhhhh------ccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHH
Q psy10300 1298 PHDLLLSAAVSPSKAVID------NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYW 1371 (1490)
Q Consensus 1298 ~~~~~ls~av~~~~~~~~------~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~ 1371 (1490)
++.+.+...+||...... ..-++..|...+|.+.+|||||.+. ..+|++||++| ++.++++.
T Consensus 218 kq~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~--~~pg~nap~~w----------i~~~l~~l 285 (392)
T KOG2091|consen 218 KQELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV--QGPGPNAPLEW----------IRHCLHHL 285 (392)
T ss_pred HhheEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc--cCCCCCCCHHH----------HHHHHHHh
Confidence 888999999888422111 1225778889999999999999874 56899999997 88888877
Q ss_pred HHcCCCCCcEEEEeeccceeeeeccCCCCCCCCccccCCCCCcccccCccchHHHHHHhhhcCCcEEEEcCCCceeeEEe
Q psy10300 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAF 1451 (1490)
Q Consensus 1372 ~~~g~p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~g~l~y~ei~~~~~~~~~~~~~D~~~~~~~y~~ 1451 (1490)
.-...-+.||.+||.|||..|.+.+ ..+.|+.......++.......||+++.++.|.|
T Consensus 286 ~~~s~~r~KiLlGlNFYG~d~~~gd---------------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~ 344 (392)
T KOG2091|consen 286 GGSSAKRPKILLGLNFYGNDFNLGD---------------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEY 344 (392)
T ss_pred CCccccccceeEeeeccccccccCC---------------------CCCceeHHHHHHHHhccCcceeeccccchhheee
Confidence 5545567899999999999996411 1234666777788888999999999999999998
Q ss_pred e----CCEEEEEcCHHHHHHHHHHHHHCCCcEEEEEecCC
Q psy10300 1452 K----GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDL 1487 (1490)
Q Consensus 1452 ~----~~~~v~ydd~~Sl~~K~~~~~~~gLgGi~iW~l~~ 1487 (1490)
+ +++.|.|.+..||..++++|++.|. ||.||++||
T Consensus 345 k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~Gq 383 (392)
T KOG2091|consen 345 KRNDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQ 383 (392)
T ss_pred eccCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccC
Confidence 6 4689999999999999999999999 999999987
No 41
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.91 E-value=1.2e-23 Score=240.96 Aligned_cols=253 Identities=19% Similarity=0.161 Sum_probs=174.6
Q ss_pred EEEEEEccCCccCCCCCCCCCCCCCCCCccEEEEEEEEEeCCCcEEEcCCchhhhhHHHHHHHHHHHhCCCeEEEEEeCC
Q psy10300 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGW 830 (1490)
Q Consensus 751 ~vvgY~~~W~~~~~g~~~~~~~~i~~~~~ThIi~aFa~~~~~~~~i~~~d~~~~~~~~~~~~i~~~k~~g~KvllSiGG~ 830 (1490)
+.+|||.+|.... ......+.+++ +.+++|++.++.+...+.. . -........+.++.+|++|+|||+|||||
T Consensus 2 ~~~~y~~~~~~~~-~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~--~---~~~~~~~~~~~i~~l~~kG~KVl~sigg~ 74 (255)
T cd06542 2 ISFGYFEVWDDKG-ASLQESLLNLP-DSVDMVSLFAANINLDAAT--A---VQFLLTNKETYIRPLQAKGTKVLLSILGN 74 (255)
T ss_pred eEEEEEEecCCcC-cccccccccCC-CcceEEEEcccccCccccc--c---hhhhhHHHHHHHHHHhhCCCEEEEEECCC
Confidence 5789999998432 23345667777 7899999844444321110 0 11123455678999999999999999999
Q ss_pred CCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceE
Q psy10300 831 NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLL 910 (1490)
Q Consensus 831 ~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~l 910 (1490)
..+. .| ....+++.|++|++++++++++|||||||||||||..... .....+.++|..||++||++|++.+++|
T Consensus 75 ~~~~--~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~---~~~~~~~~~~~~lv~~Lr~~~~~~~kll 148 (255)
T cd06542 75 HLGA--GF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKN---GTSQPSNEAFVRLIKELRKYMGPTDKLL 148 (255)
T ss_pred CCCC--Cc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCC---CCCcchHHHHHHHHHHHHHHhCcCCcEE
Confidence 8652 23 3467888999999999999999999999999999863211 1124588999999999999998778999
Q ss_pred EEEECCChhhHhhhcChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHHHHHHHHHcCCCCCCeEE
Q psy10300 911 SAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVM 990 (1490)
Q Consensus 911 s~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~~~G~p~~Klvl 990 (1490)
++++.+..... +.+++.+++|||++|+||.++. ..+. ++ .....|+|++|+++
T Consensus 149 t~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~----~~----------------~~~~~g~~~~k~i~ 201 (255)
T cd06542 149 TIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR----NW----------------NTNSPKIPPEKMVY 201 (255)
T ss_pred EEEecCCchhc----CHHHHHHhCCEEEeeccCCCCc---cCCc----cc----------------ccccCCCCHHHcee
Confidence 99987654322 6789999999999999985432 2111 11 11235899999999
Q ss_pred EeeccccceeccCCCCCCCCCCCCCCcccchhhHHHhhcCCccEEEecccCCCCCCCCCCCCCchHHHhhhhc
Q psy10300 991 GMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVT 1063 (1490)
Q Consensus 991 Glp~yG~~~~~~~~~~~g~~~~~~g~g~y~~~~yi~~~~~lGG~m~W~l~~Dd~~~~c~~~~~~ll~~i~~~l 1063 (1490)
|+++++.... ...........++....++||+|+|.++.|.. +++++++.+.|
T Consensus 202 ~~~~~~~~~~------------~~~~~~~~~A~~~~~~~~~gG~~~y~~~~dy~--------~~~~~~~~~~~ 254 (255)
T cd06542 202 TESFEEENGG------------NSGSSAEQYARWTPAKGGKGGIGTYALDRDYY--------RPYDSAVSKAL 254 (255)
T ss_pred eeeeecccCC------------CcchhHHHHHhcCcccCceEEEEEEecCCCcc--------ccchhhhhhhh
Confidence 9999854221 00000000111222223899999999998752 46666666554
No 42
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.89 E-value=1.4e-22 Score=231.96 Aligned_cols=206 Identities=21% Similarity=0.182 Sum_probs=151.1
Q ss_pred EEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEcCc
Q psy10300 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGW 1223 (1490)
Q Consensus 1144 ~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiGG~ 1223 (1490)
+.+|||.+|.... ......+.+++ +.+++|++.++.++.++... .........+.++.+|++|+||+++||||
T Consensus 2 ~~~~y~~~~~~~~-~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~-----~~~~~~~~~~~i~~l~~kG~KVl~sigg~ 74 (255)
T cd06542 2 ISFGYFEVWDDKG-ASLQESLLNLP-DSVDMVSLFAANINLDAATA-----VQFLLTNKETYIRPLQAKGTKVLLSILGN 74 (255)
T ss_pred eEEEEEEecCCcC-cccccccccCC-CcceEEEEcccccCcccccc-----hhhhhHHHHHHHHHHhhCCCEEEEEECCC
Confidence 5789999998432 22333455665 67899999555544332110 11234556778889999999999999999
Q ss_pred CCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEE
Q psy10300 1224 NDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLL 1303 (1490)
Q Consensus 1224 ~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~l 1303 (1490)
..+. .| ....+++.|++|+++|++++++|||||||||||||.... ....+.++++|..||++||++|++.+++|
T Consensus 75 ~~~~--~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~---~~~~~~~~~~~~~lv~~Lr~~~~~~~kll 148 (255)
T cd06542 75 HLGA--GF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGK---NGTSQPSNEAFVRLIKELRKYMGPTDKLL 148 (255)
T ss_pred CCCC--Cc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCC---CCCCcchHHHHHHHHHHHHHHhCcCCcEE
Confidence 8653 34 345688999999999999999999999999999986311 11124588999999999999998878999
Q ss_pred EEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcCCCCCcEEE
Q psy10300 1304 SAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIF 1383 (1490)
Q Consensus 1304 s~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~p~~Klvl 1383 (1490)
++++++..... +.+++.+++|||++|+|+.++. ..+. ++ .....|+|++|+++
T Consensus 149 t~~~~~~~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~----~~----------------~~~~~g~~~~k~i~ 201 (255)
T cd06542 149 TIDGYGQALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR----NW----------------NTNSPKIPPEKMVY 201 (255)
T ss_pred EEEecCCchhc----CHHHHHHhCCEEEeeccCCCCc---cCCc----cc----------------ccccCCCCHHHcee
Confidence 99987654322 6789999999999999985433 1110 00 11245899999999
Q ss_pred Eeeccc
Q psy10300 1384 GMPMYG 1389 (1490)
Q Consensus 1384 Glp~YG 1389 (1490)
|++|++
T Consensus 202 ~~~~~~ 207 (255)
T cd06542 202 TESFEE 207 (255)
T ss_pred eeeeec
Confidence 999986
No 43
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.4e-22 Score=211.07 Aligned_cols=269 Identities=20% Similarity=0.319 Sum_probs=171.7
Q ss_pred CCCCCcEEEEEEccCCcc-CCCCCCCCCCCCCC----CCccEEEEEEEEEeCCCcEEEcCCchhhhhHHHHHHHHHHHhC
Q psy10300 745 PLDQYFKIVCYFTNWAWY-RPGKGKYVPEDIRT----DLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK 819 (1490)
Q Consensus 745 ~~~~~~~vvgY~~~W~~~-~~g~~~~~~~~i~~----~~~ThIi~aFa~~~~~~~~i~~~d~~~~~~~~~~~~i~~~k~~ 819 (1490)
+...++++||||+||-.. ..|...-...+|.. ..++.+.++|..-. +.|....+..+.+.+|.+++.+|+++
T Consensus 21 ~~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~---g~iptf~P~~~~daeFr~~v~aLnae 97 (332)
T COG3469 21 PDISNKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGA---GDIPTFKPYNDPDAEFRAQVGALNAE 97 (332)
T ss_pred cccccceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecC---CCCcccCcCCCCHHHHHHHHHHhhcc
Confidence 344456999999999632 11222223333332 46888889997754 36777788888889999999999999
Q ss_pred CCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHH
Q psy10300 820 GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVREL 899 (1490)
Q Consensus 820 g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eL 899 (1490)
|.-|+||+||..+... +.. ...+.|+++|+++++.|||||+|||.|.-. ......+....+++|.+
T Consensus 98 GkavllsLGGAdghIe------L~~-~qE~~fv~eiirlietyGFDGLDiDLEq~a-------i~~~dnq~v~p~alk~v 163 (332)
T COG3469 98 GKAVLLSLGGADGHIE------LKA-GQEQAFVNEIIRLIETYGFDGLDIDLEQSA-------ILAADNQTVIPAALKAV 163 (332)
T ss_pred CcEEEEEccCccceEE------ecc-chHHHHHHHHHHHHHHhCCCccccchhhhh-------hhhcCCeeehHHHHHHH
Confidence 9999999999875421 222 236789999999999999999999999321 11223444678899999
Q ss_pred HHHhCCCC--ceEEEEECCChhhHhhh--c--ChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHH
Q psy10300 900 HQAFKPHG--LLLSAAVSPSKQVINAA--Y--DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANF 973 (1490)
Q Consensus 900 r~~l~~~~--~~ls~a~~~~~~~~~~~--~--~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~ 973 (1490)
|+..+..| +.|+|| |..++.... | .+.++..+.|||++|-|+..|.-.-.+..++++-. .+....-+.-.
T Consensus 164 k~hyk~~Gk~f~itMA--PEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q--~nd~~kesfly 239 (332)
T COG3469 164 KDHYKNQGKNFFITMA--PEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQ--NNDMVKESFLY 239 (332)
T ss_pred HHHHHhcCCceEEEec--CCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCcccccccc--ccHHHHHhHHH
Confidence 99887655 566666 654443221 2 47788999999999999998752222333333321 11100001111
Q ss_pred HHHHHHHcC------CCCCCeEEEeeccccceeccCCCCCCCCCCCCCCcccc-hhhH-HH----hhcCCccEEEecccC
Q psy10300 974 TMNYWMKKG------APSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHP-LLST-IT----EVLGHGPGGNYESTT 1041 (1490)
Q Consensus 974 ~v~~~~~~G------~p~~KlvlGlp~yG~~~~~~~~~~~g~~~~~~g~g~y~-~~~y-i~----~~~~lGG~m~W~l~~ 1041 (1490)
-+..-+..| +|++|+++|||. ..+ +.+.|--.-+ .+.- .| ....+.|+|.|+++|
T Consensus 240 ~~~~slanGtr~f~~ipa~k~aiGLPs------n~d-------aAatGyv~dpniv~n~~~rlka~g~~ikGvMTWSvNW 306 (332)
T COG3469 240 YLTFSLANGTRGFEKIPADKFAIGLPS------NVD-------AAATGYVKDPNIVDNAFNRLKATGCNIKGVMTWSVNW 306 (332)
T ss_pred HhhhhhhcCcccceecccceeEEecCC------Ccc-------hhhcCcCCCHHHHHHHHHHhhccCCcccceEEEEEec
Confidence 111112222 799999999995 111 2222211100 2222 23 344788999999999
Q ss_pred CCCCCC
Q psy10300 1042 EEYKPT 1047 (1490)
Q Consensus 1042 Dd~~~~ 1047 (1490)
|+-.+.
T Consensus 307 D~g~n~ 312 (332)
T COG3469 307 DAGKNS 312 (332)
T ss_pred cccCCc
Confidence 985543
No 44
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.84 E-value=7.7e-20 Score=208.14 Aligned_cols=184 Identities=23% Similarity=0.241 Sum_probs=128.7
Q ss_pred CCCCccEEEEeeEEecCCCcE----eccCCCcch--hhHHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHH
Q psy10300 1168 DSDLCTHVIYGFAVLDTDQLV----IKPHDTWAD--LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQAR 1241 (1490)
Q Consensus 1168 ~~~~~ThIi~af~~i~~~~~~----~~~~~~~~~--~~~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r 1241 (1490)
+-..++.|+++|+..-.++.. +..+..... .-.++.+.|+.+|++|+|||||||||..+. . +.+++.|
T Consensus 21 ~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIGG~~~~~--~----~~s~~~a 94 (280)
T cd02877 21 DTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIGGAGGSY--S----LSSDADA 94 (280)
T ss_pred CCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEccCCCCCc--C----CCCHHHH
Confidence 445789999999987654221 111111000 113688999999999999999999998652 2 3789999
Q ss_pred HHHHHHHHHHHH------------HcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC---CCcEEEEE
Q psy10300 1242 SKFIAHVVNFIL------------EHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP---HDLLLSAA 1306 (1490)
Q Consensus 1242 ~~fi~si~~~l~------------~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~---~~~~ls~a 1306 (1490)
++|+++|.+++. +++|||||||||+|. ..+|..|+++||+.++. ++++||+|
T Consensus 95 ~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~-------------~~~~~~l~~~LR~~~~~~~~~~~~LTaA 161 (280)
T cd02877 95 KDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGS-------------PENYDALAKRLRSLFASDPSKKYYLTAA 161 (280)
T ss_pred HHHHHHHHHHhCCccccccccccccccccceEEecccCC-------------ccCHHHHHHHHHHHhhcccCCceEEEec
Confidence 999999988752 577999999999875 16899999999999975 56889988
Q ss_pred eCCChhhhhccCChhhhc-ccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHHHcCCCC---CcEE
Q psy10300 1307 VSPSKAVIDNAYDIPVMS-ENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADR---KKVI 1382 (1490)
Q Consensus 1307 v~~~~~~~~~~~d~~~l~-~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~p~---~Klv 1382 (1490)
+... . ...+....|. .++|||+||.||..+- .. . . . .........+.|... ++. .||+
T Consensus 162 Pq~~--~-~d~~~~~~i~~~~~D~i~vqfYn~~~c-~~------~-~--~----~~~~~~~~~~~w~~~-~~~~~~~kv~ 223 (280)
T cd02877 162 PQCP--Y-PDASLGDAIATGLFDFIFVQFYNNPCC-SY------A-S--G----NASGFNFNWDTWTSW-AKATSNAKVF 223 (280)
T ss_pred cccC--C-cchhHHHHHccCccCEEEEEEecCccc-cc------c-c--c----ccchhhhHHHHHHHh-cccCCCceEE
Confidence 5432 1 1223344555 4999999999996532 00 0 0 0 011234456677665 665 8999
Q ss_pred EEeecc
Q psy10300 1383 FGMPMY 1388 (1490)
Q Consensus 1383 lGlp~Y 1388 (1490)
||||..
T Consensus 224 lGlpas 229 (280)
T cd02877 224 LGLPAS 229 (280)
T ss_pred EecccC
Confidence 999965
No 45
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.83 E-value=2.8e-20 Score=213.25 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=119.0
Q ss_pred CCCCccEEEEEEEEEeCCCcEEEcCCchh-hhhHHHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHH
Q psy10300 775 RTDLCTHIVYGFAVLDSENLIIKAHDSWA-DFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIE 853 (1490)
Q Consensus 775 ~~~~~ThIi~aFa~~~~~~~~i~~~d~~~-~~~~~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~ 853 (1490)
....|+||++||+... .++......... +....+.++|+.||++|+||+||||||++. .| ..+...|++|++
T Consensus 22 ~~~g~~~v~lAFi~~~-~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~---~~---~~~~~~~~~~~~ 94 (294)
T cd06543 22 AATGVKAFTLAFIVAS-GGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGT---PL---ATSCTSADQLAA 94 (294)
T ss_pred HHcCCCEEEEEEEEcC-CCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCC---cc---ccCcccHHHHHH
Confidence 3468999999999887 455443322111 123566889999999999999999999864 23 336778999999
Q ss_pred HHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHh-hhcChhhhcc
Q psy10300 854 HVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVIN-AAYDVKALSE 932 (1490)
Q Consensus 854 s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~-~~~~~~~l~~ 932 (1490)
++.++|++|+|||||||||+|.. ......+++.++|++|+++++ ++.|+++++..+.... .++++.+.++
T Consensus 95 a~~~~i~~y~~dgiDfDiE~~~~-------~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~ 165 (294)
T cd06543 95 AYQKVIDAYGLTHLDFDIEGGAL-------TDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAAA 165 (294)
T ss_pred HHHHHHHHhCCCeEEEeccCCcc-------ccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHHH
Confidence 99999999999999999998751 111234889999999999985 5788888765433222 4566777777
Q ss_pred ----cCceEEeeccccCCC
Q psy10300 933 ----SLDWISVMTYDYHGQ 947 (1490)
Q Consensus 933 ----~vD~i~vmtYD~~g~ 947 (1490)
.+|+||||+|||++.
T Consensus 166 ~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 166 ANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred HcCCCcceeeeeeecCCCC
Confidence 899999999999864
No 46
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.82 E-value=1.8e-19 Score=206.69 Aligned_cols=157 Identities=17% Similarity=0.169 Sum_probs=121.2
Q ss_pred CCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHH
Q psy10300 1169 SDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHV 1248 (1490)
Q Consensus 1169 ~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si 1248 (1490)
...|+||+++|+....++..........+....+...|+.+|++|+||+||||||... .| ..+...|++|++++
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~---~~---~~~~~~~~~~~~a~ 96 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAAGGDVIVSFGGASGT---PL---ATSCTSADQLAAAY 96 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHcCCeEEEEecCCCCC---cc---ccCcccHHHHHHHH
Confidence 3579999999998875543322111111124567888999999999999999999864 23 34778999999999
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhh-ccCChhhhcc--
Q psy10300 1249 VNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID-NAYDIPVMSE-- 1325 (1490)
Q Consensus 1249 ~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~-~~~d~~~l~~-- 1325 (1490)
.++|++|+|||||||||+|.. ......+++..+|++|+++++ ++.|++++|..+..+. .++++.+.++
T Consensus 97 ~~~i~~y~~dgiDfDiE~~~~-------~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~ 167 (294)
T cd06543 97 QKVIDAYGLTHLDFDIEGGAL-------TDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDGLNVLEAAAAN 167 (294)
T ss_pred HHHHHHhCCCeEEEeccCCcc-------ccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhHHHHHHHHHHc
Confidence 999999999999999998751 112234899999999999994 6889999886655443 5667777777
Q ss_pred --cCcEEEEeeccCCCC
Q psy10300 1326 --NLDWISVMTYDYHGQ 1340 (1490)
Q Consensus 1326 --~vD~i~vmtYD~~g~ 1340 (1490)
.+|+||||+|||++.
T Consensus 168 Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 168 GVDLDTVNIMTMDYGSS 184 (294)
T ss_pred CCCcceeeeeeecCCCC
Confidence 899999999999865
No 47
>KOG4701|consensus
Probab=99.82 E-value=4.9e-19 Score=193.77 Aligned_cols=236 Identities=19% Similarity=0.293 Sum_probs=166.0
Q ss_pred EEEEEEccCCccCCCCCCCCCCCCCCCCccEEEEEEEEEeCCCcE--EEcCCchhhhh-------HHHHHHHHHHHhCCC
Q psy10300 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLI--IKAHDSWADFD-------NRFYERVVTLKKKGV 821 (1490)
Q Consensus 751 ~vvgY~~~W~~~~~g~~~~~~~~i~~~~~ThIi~aFa~~~~~~~~--i~~~d~~~~~~-------~~~~~~i~~~k~~g~ 821 (1490)
-+.+| |+++..|........+....+..|+++|+.-.+.++. +.+...-.|.. .++..+|+.|+.+|+
T Consensus 28 ~IA~Y---WGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~Gi 104 (568)
T KOG4701|consen 28 AIAGY---WGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSNGI 104 (568)
T ss_pred ceEEE---eccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhcCe
Confidence 47778 5666667766667778888999999999976654443 22221111111 256789999999999
Q ss_pred eEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC----------CCeEEEeecCCCCCCCCCCCCCCchhhh
Q psy10300 822 KVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ----------FDGLDLDWEYPTCWQVNCDAGPDSDKES 891 (1490)
Q Consensus 822 KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~yg----------fDGvDiDwE~P~~~~~~~~~~~~~d~~~ 891 (1490)
|||||+||..+... +++++..+.|++.+++.+.... +||+|||+| ......
T Consensus 105 KVlLSLGG~~GnYs------~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE-------------~g~~~~ 165 (568)
T KOG4701|consen 105 KVLLSLGGYNGNYS------LNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIE-------------KGTNTA 165 (568)
T ss_pred EEEEeccCccccee------eccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeee-------------cCCcch
Confidence 99999999887643 7888899999999999886532 899999999 234467
Q ss_pred HHHHHHHHHHHhCC--CCceEEEEECCChhhHhhhcChhhhcccCceEEeecccc-CCCCCCCCCCCCCCCCCCCCCccc
Q psy10300 892 FGLFVRELHQAFKP--HGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDY-HGQWDKKTGHVAPLYEHPDDDFFY 968 (1490)
Q Consensus 892 ~~~ll~eLr~~l~~--~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD~-~g~w~~~~g~~apl~~~~~~~~~~ 968 (1490)
|.+|.+.||..|.. ++|+|+.| |++++.+....-..-.+-+||+.||+|+. ..... .| ..+
T Consensus 166 ysaLA~~L~~~Fa~~~r~yYLsaA--PQCP~PD~~~G~aL~~~~fDf~~IQFYNN~~CS~S--sG------------~~Q 229 (568)
T KOG4701|consen 166 YSALAKRLLEIFASDPRRYYLSAA--PQCPVPDHTLGKALSENSFDFLSIQFYNNSTCSGS--SG------------SRQ 229 (568)
T ss_pred HHHHHHHHHHHHccCCceEEeccC--CCCCCCchhhhhhhhccccceEEEEeecCCCcccc--cC------------ccc
Confidence 89999999999965 45777777 77776655444444456799999999985 22100 01 123
Q ss_pred cCHHHHHHHHHHcCCCCCC---eEEEeeccccceeccCCCCCCCCCCCCCCccc-----c--hhhHHHhhcCCccEEEec
Q psy10300 969 FNANFTMNYWMKKGAPSRK---LVMGMPMYGQAFSLANSNDHGLNAAAPGAGVH-----P--LLSTITEVLGHGPGGNYE 1038 (1490)
Q Consensus 969 ~~~~~~v~~~~~~G~p~~K---lvlGlp~yG~~~~~~~~~~~g~~~~~~g~g~y-----~--~~~yi~~~~~lGG~m~W~ 1038 (1490)
+++|.+++|... +.++| ++||||.. +.+.|.|.. + .+.|+++...|||+|+|+
T Consensus 230 ~~fDsW~~ya~~--~a~nKn~~lFLGLPg~---------------~~AAGSGYIsp~~Lt~~~l~~~a~S~~fGGv~LWd 292 (568)
T KOG4701|consen 230 STFDAWVEYAED--SAYNKNTSLFLGLPGH---------------QNAAGSGYISPKNLTRDLLNYKANSTLFGGVTLWD 292 (568)
T ss_pred ccHHHHHHHHhh--hcccccceEEeeccCC---------------cccccCCccCchHHHHHHHHhhhhccccccEEEee
Confidence 567776666433 55666 99999952 122333331 1 677888999999999998
Q ss_pred ccC
Q psy10300 1039 STT 1041 (1490)
Q Consensus 1039 l~~ 1041 (1490)
-.+
T Consensus 293 ~s~ 295 (568)
T KOG4701|consen 293 TSL 295 (568)
T ss_pred chh
Confidence 843
No 48
>KOG2091|consensus
Probab=99.74 E-value=4.2e-17 Score=175.87 Aligned_cols=285 Identities=15% Similarity=0.260 Sum_probs=213.9
Q ss_pred eEEEEecCcccccCCCCCccccCCCCCCcceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEe-
Q psy10300 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAV- 203 (1490)
Q Consensus 125 ~vvCy~~~~~~~r~~~~~f~~~~i~~~lCTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsv- 203 (1490)
-+.+|.+.|.-. -|.+..|=....|||---+.-+...+ .........|++.++.+. ||+++++|+++.-+
T Consensus 80 ~vLayVTPWNs~-----Gydvakifaskft~iSPVW~ql~~qg-s~~~v~G~hdid~gwira---lRk~~~~l~ivPR~~ 150 (392)
T KOG2091|consen 80 TVLAYVTPWNSH-----GYDVAKIFASKFTYISPVWLQLKDQG-SDVGVYGKHDIDPGWIRA---LRKSGKDLHIVPRFY 150 (392)
T ss_pred ceEEEecCcCcc-----chhHHHHHhcccceecchheeehhcC-cceEEeecccCChHHHHH---HHHhCCCceeeceeh
Confidence 478999999642 37777777788899987777776555 343334455666666665 99999999987555
Q ss_pred -----ccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEE-eeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhc
Q psy10300 204 -----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN-VKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRN 277 (1490)
Q Consensus 204 -----Gg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdld-we~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~ 277 (1490)
+..+..++.+.+.|++..+.++++++++||||+.|+ |..-. +...| .....|++.|-++|++.
T Consensus 151 fd~~~~~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a----------~~i~d-~~al~~v~hl~k~Lhkq 219 (392)
T KOG2091|consen 151 FDEFTSADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLA----------DVIAD-KDALELVEHLGKALHKQ 219 (392)
T ss_pred hhhccchHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHH----------HHHhh-hHHHHHHHHHHHHHHHh
Confidence 226888999999999999999999999999999998 54211 11122 34567888999999998
Q ss_pred CcEEEEEecccccccc------cccChhhhcccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccHHHHHHH
Q psy10300 278 NYQLTLTSPGVIDRKT------SLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 351 (1490)
Q Consensus 278 ~~~ls~~v~~~~~~~~------~~yd~~~l~~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v~~~v~~ 351 (1490)
.+++-++|||...... ..-++..|...+|.+.|||||+.+.. .| |.++|+ .-|+.++++
T Consensus 220 ~l~~iLvvPp~~~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~~---~p---g~nap~---------~wi~~~l~~ 284 (392)
T KOG2091|consen 220 ELQAILVVPPVIEEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLVQ---GP---GPNAPL---------EWIRHCLHH 284 (392)
T ss_pred heEEEEEeCCCCcCCCCCcCcCCHHHHHHHHHhhhheeEEEeeccccc---CC---CCCCCH---------HHHHHHHHH
Confidence 8999999998433211 22266889999999999999998644 45 789997 357777777
Q ss_pred HHHcCCCCCcEEEeeeeeeeeEEecCCCCCCCCcccccCCCCCCccCCCccccHHHHHHHhcCCCcceeeCCC--CCcee
Q psy10300 352 WIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSN--GEPFM 429 (1490)
Q Consensus 352 ~~~~g~~~~Klvlgvp~yG~~~~l~~~~~~~~g~p~~g~g~~g~~t~~~g~lsY~eic~~~~~~~~~~~~D~~--~~py~ 429 (1490)
..-...-+.||++||.|||..|.+.+. | +-+.-......++...-...||++ ..-+.
T Consensus 285 l~~~s~~r~KiLlGlNFYG~d~~~gdg-----~----------------~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~ 343 (392)
T KOG2091|consen 285 LGGSSAKRPKILLGLNFYGNDFNLGDG-----G----------------EAITAKRYLQLLKGEKSVFKFDEESKEHFFE 343 (392)
T ss_pred hCCccccccceeEeeeccccccccCCC-----C----------------CceeHHHHHHHHhccCcceeeccccchhhee
Confidence 655555678999999999999987221 1 123334555667777777888888 33455
Q ss_pred Ee----CCeEEEecChHHHHHHHHHHHHcCcceEEEEcCCC
Q psy10300 430 VK----KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDL 466 (1490)
Q Consensus 430 ~~----~~~wv~Yed~~Sl~~K~~~~~~~glgGv~iW~ld~ 466 (1490)
++ ++.-|-|..-.||..+++.|++.|. ||.||++++
T Consensus 344 ~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~gv-gISIWe~Gq 383 (392)
T KOG2091|consen 344 YKRNDDGKHIVFYPTLTSLELRIELARELGV-GISIWEYGQ 383 (392)
T ss_pred eeccCCCceEEEecchHhHHHHHHHHHHhCC-ceEeeeccC
Confidence 65 2457889999999999999999998 799999986
No 49
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.70 E-value=2.6e-16 Score=164.76 Aligned_cols=222 Identities=22% Similarity=0.328 Sum_probs=143.9
Q ss_pred CCcEEEEEEccCccccCCCCCC---CCCCCC----CCCccEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCC
Q psy10300 1141 DEFKIVCYFTNWAWYRQSGGKY---LPSDID----SDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG 1213 (1490)
Q Consensus 1141 ~~~~vvgY~~~w~~~~~~~~~~---~~~~i~----~~~~ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g 1213 (1490)
.++++||||+||-... ...| ...+|. ...+..+..+|..-.. .+..+.++.+.+.+|.+++..|+++|
T Consensus 24 ~~KvLvGyWHnw~sga--aDgyq~gs~adial~d~~~~ynvv~V~Fmk~~g---~iptf~P~~~~daeFr~~v~aLnaeG 98 (332)
T COG3469 24 SNKVLVGYWHNWKSGA--ADGYQQGSSADIALADTPRNYNVVTVSFMKGAG---DIPTFKPYNDPDAEFRAQVGALNAEG 98 (332)
T ss_pred ccceEEEeeecccccc--cccccccceeeeEeccCCcccceEEEEEeecCC---CCcccCcCCCCHHHHHHHHHHhhccC
Confidence 4559999999996321 1111 122222 2346677777754433 35556677788899999999999999
Q ss_pred cEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHH
Q psy10300 1214 VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELR 1293 (1490)
Q Consensus 1214 ~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr 1293 (1490)
.-|+||+||...... + .....+.|+++|+.+|+.|||||+|||.|--. .....++.-...++|.+|
T Consensus 99 kavllsLGGAdghIe------L-~~~qE~~fv~eiirlietyGFDGLDiDLEq~a-------i~~~dnq~v~p~alk~vk 164 (332)
T COG3469 99 KAVLLSLGGADGHIE------L-KAGQEQAFVNEIIRLIETYGFDGLDIDLEQSA-------ILAADNQTVIPAALKAVK 164 (332)
T ss_pred cEEEEEccCccceEE------e-ccchHHHHHHHHHHHHHHhCCCccccchhhhh-------hhhcCCeeehHHHHHHHH
Confidence 999999999765431 3 33447899999999999999999999999321 122334446778899999
Q ss_pred HhcCCCCcEEEEEeCCChhhhhc--cC--ChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHH
Q psy10300 1294 AAFNPHDLLLSAAVSPSKAVIDN--AY--DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLH 1369 (1490)
Q Consensus 1294 ~~l~~~~~~ls~av~~~~~~~~~--~~--d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~ 1369 (1490)
+..+..|.-+.+++.|...++.. .| .+.+|..+.|||+++-|+..|.-.-.+..++++-. .+ .-+....-
T Consensus 165 ~hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q--~n----d~~kesfl 238 (332)
T COG3469 165 DHYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGDGNWVTESNAWIAQ--NN----DMVKESFL 238 (332)
T ss_pred HHHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCCCCCcCcccccccc--cc----HHHHHhHH
Confidence 88887664444444454433322 12 36788899999999999988752222222333221 00 01222222
Q ss_pred HHHH----c------CCCCCcEEEEeec
Q psy10300 1370 YWVS----H------GADRKKVIFGMPM 1387 (1490)
Q Consensus 1370 ~~~~----~------g~p~~KlvlGlp~ 1387 (1490)
|++. . .+|.+|+++|||.
T Consensus 239 y~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 239 YYLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HHhhhhhhcCcccceecccceeEEecCC
Confidence 2221 1 2799999999984
No 50
>KOG4701|consensus
Probab=99.04 E-value=6e-09 Score=115.55 Aligned_cols=207 Identities=20% Similarity=0.301 Sum_probs=124.4
Q ss_pred CcEEEEEEccCccccCCCCCCCCCCCCCCCccEEEEeeEEecCCCcE--ec--cCCCcchh-----hHHHHHHHHHHhcC
Q psy10300 1142 EFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV--IK--PHDTWADL-----DNKFYEKVTALKKK 1212 (1490)
Q Consensus 1142 ~~~vvgY~~~w~~~~~~~~~~~~~~i~~~~~ThIi~af~~i~~~~~~--~~--~~~~~~~~-----~~~~~~~i~~~k~~ 1212 (1490)
.-.|.+||-- ...|..+-+..--....+..|+++|..--+++.. +. .+....+. -.++..+|+.++.+
T Consensus 26 ~t~IA~YWGQ---N~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS~ 102 (568)
T KOG4701|consen 26 QTAIAGYWGQ---NLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQSN 102 (568)
T ss_pred ccceEEEecc---ccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHhc
Confidence 3457788752 2112222233334456778899998754332211 11 11111111 13567889999999
Q ss_pred CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHc----------CCCeEEEeecCCCCCCCCCCCCCccch
Q psy10300 1213 GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH----------NFDGLDLDWEYPKCWQVDCKQGPASDK 1282 (1490)
Q Consensus 1213 g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~----------g~DGIDIDwE~P~~~~~~~~~~~~~d~ 1282 (1490)
|+||||++||..+. | .+++.+..+.|++.+.+....- -+||+|+|.| ....
T Consensus 103 GiKVlLSLGG~~Gn----Y--s~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE-------------~g~~ 163 (568)
T KOG4701|consen 103 GIKVLLSLGGYNGN----Y--SLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIE-------------KGTN 163 (568)
T ss_pred CeEEEEeccCcccc----e--eeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeee-------------cCCc
Confidence 99999999997654 3 3778889999999998866431 2899999999 2345
Q ss_pred hhHHHHHHHHHHhcCCC--CcEEEEEeCCChhhhhccCChhhh-cccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCC
Q psy10300 1283 QGFADLIKELRAAFNPH--DLLLSAAVSPSKAVIDNAYDIPVM-SENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTT 1359 (1490)
Q Consensus 1283 ~~~~~ll~eLr~~l~~~--~~~ls~av~~~~~~~~~~~d~~~l-~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~ 1359 (1490)
..|-.|-+.||..|... .+.|+.| |...+.+.... ..| .+-.||+.|+.|+..- .....+ .
T Consensus 164 ~~ysaLA~~L~~~Fa~~~r~yYLsaA--PQCP~PD~~~G-~aL~~~~fDf~~IQFYNN~~-----------CS~SsG--~ 227 (568)
T KOG4701|consen 164 TAYSALAKRLLEIFASDPRRYYLSAA--PQCPVPDHTLG-KALSENSFDFLSIQFYNNST-----------CSGSSG--S 227 (568)
T ss_pred chHHHHHHHHHHHHccCCceEEeccC--CCCCCCchhhh-hhhhccccceEEEEeecCCC-----------cccccC--c
Confidence 67888999999999754 4556665 43333222111 112 3457999999999521 000000 1
Q ss_pred CCcCHHHHHHHHHHcCCCCCc---EEEEeecc
Q psy10300 1360 PTFNANYSLHYWVSHGADRKK---VIFGMPMY 1388 (1490)
Q Consensus 1360 ~~~~i~~~v~~~~~~g~p~~K---lvlGlp~Y 1388 (1490)
..++.+..++|.. .+.++| |+||||.-
T Consensus 228 ~Q~~fDsW~~ya~--~~a~nKn~~lFLGLPg~ 257 (568)
T KOG4701|consen 228 RQSTFDAWVEYAE--DSAYNKNTSLFLGLPGH 257 (568)
T ss_pred ccccHHHHHHHHh--hhcccccceEEeeccCC
Confidence 1233444444332 256666 99999854
No 51
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=98.63 E-value=1.9e-08 Score=85.16 Aligned_cols=48 Identities=33% Similarity=0.808 Sum_probs=37.6
Q ss_pred CCccccCCCCCCccEEecCCeEEEEecCCCcccccccCCCCCCCC-ccc
Q psy10300 550 NGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYN-VQC 597 (1490)
Q Consensus 550 ~~g~~~~~~~C~~yy~C~~g~~~~~~Cp~g~~fd~~~~~C~~~~~-v~C 597 (1490)
.+|+++++.+|++||+|.+|.++.+.||.|++||+.++.|+++.. +.|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 468999999999999999999999999999999999999999988 666
No 52
>PF01607 CBM_14: Chitin binding Peritrophin-A domain; InterPro: IPR002557 This entry represents a chitin binding domain []. It is found in (amongst others) the Peritrophin-A chitin binding proteins, particularly the peritrophic matrix proteins of insects and animal chitinases [, , ]. Copies of the domain are also found in some baculoviruses. It is an extracellular domain that contains six conserved cysteines that probably form three disulphide bridges. Chitin binding has been demonstrated for a protein containing only two of these domains [].; GO: 0008061 chitin binding, 0006030 chitin metabolic process, 0005576 extracellular region; PDB: 1DQC_A.
Probab=98.57 E-value=3.1e-08 Score=83.88 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=37.7
Q ss_pred CCCcccCcCCCccceeecCCceeeeeCCCCccccCCCCccCCCCC-CcC
Q psy10300 617 EGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYR-TKC 664 (1490)
Q Consensus 617 ~~~~~~~p~~C~~yy~C~~G~~~~~~Cp~Gl~fn~~~~~C~~~~~-v~C 664 (1490)
..++++++.+|++||+|.+|.++.++||.|++||+.++.|+++.. +.|
T Consensus 5 ~~~~~~~~~~C~~Y~~C~~g~~~~~~C~~g~~fd~~~~~C~~~~~~~~C 53 (53)
T PF01607_consen 5 GDGFYPHPDDCRKYYQCVNGQAVEQRCPEGLYFDPSSQRCVPPSNVVQC 53 (53)
T ss_dssp SSEEE--SS-SSEEEEEETTEEEEEE-TTS-EE-TTTSSEE-TTT-TT-
T ss_pred CCeeEeCCCCCCEEEEeeCCcEECCCCcCCCEECcCcCEEcCCccCCCC
Confidence 467899999999999999999999999999999999999999998 776
No 53
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.44 E-value=1.9e-07 Score=79.99 Aligned_cols=51 Identities=33% Similarity=0.885 Sum_probs=47.3
Q ss_pred cC--CCccccCCCCCCccEEecCCeEEEEecCCCcccccccCCCCCCCCcccC
Q psy10300 548 CV--NGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCS 598 (1490)
Q Consensus 548 C~--~~g~~~~~~~C~~yy~C~~g~~~~~~Cp~g~~fd~~~~~C~~~~~v~C~ 598 (1490)
|. .+|+++|+.+|++||+|.+|..+.+.||.|++||+..+.|+++..+.|.
T Consensus 3 C~~~~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 3 CPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred CCCCCCccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 55 4699999999999999999999999999999999999999999988884
No 54
>smart00494 ChtBD2 Chitin-binding domain type 2.
Probab=98.40 E-value=2.9e-07 Score=78.84 Aligned_cols=49 Identities=37% Similarity=0.805 Sum_probs=46.6
Q ss_pred CCCcccCcCCCccceeecCCceeeeeCCCCccccCCCCccCCCCCCcCC
Q psy10300 617 EGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCK 665 (1490)
Q Consensus 617 ~~~~~~~p~~C~~yy~C~~G~~~~~~Cp~Gl~fn~~~~~C~~~~~v~C~ 665 (1490)
.++++++|.+|++||.|.+|.+..+.||.|++||...+.|+++..+.|.
T Consensus 7 ~~g~~~~~~~C~~y~~C~~~~~~~~~C~~g~~f~~~~~~C~~~~~~~C~ 55 (56)
T smart00494 7 GDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFDPATQTCDWPDNVGCG 55 (56)
T ss_pred CCccccCcccCCeeEEcCCCcEEeccCcCCCeECCCCCCcCCcccCCCC
Confidence 4789999999999999999999999999999999999999999998885
No 55
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.18 E-value=1.2e-05 Score=94.86 Aligned_cols=157 Identities=17% Similarity=0.236 Sum_probs=104.8
Q ss_pred HHHHHHhcCCcEEEEEEc-CcCCCCCcchhhhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccc
Q psy10300 1204 EKVTALKKKGVKVTLAIG-GWNDSAGNKYSRLVNS-QQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASD 1281 (1490)
Q Consensus 1204 ~~i~~~k~~g~KvllsiG-G~~~s~~~~f~~~~~~-~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d 1281 (1490)
..+..+|++||||+-.|- -|.+ ..+.+..++.+ ++.+..+|+.|+++++.|||||+.||+|... ....+
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~--------~~~~~ 120 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETEL--------GDAEK 120 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccC--------CcHHH
Confidence 347789999999997663 2221 22567888888 9999999999999999999999999999432 14678
Q ss_pred hhhHHHHHHHHHHhcCCCC--cEEE-EEeCC-Chh-hhh---ccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCC
Q psy10300 1282 KQGFADLIKELRAAFNPHD--LLLS-AAVSP-SKA-VID---NAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1353 (1490)
Q Consensus 1282 ~~~~~~ll~eLr~~l~~~~--~~ls-~av~~-~~~-~~~---~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~ 1353 (1490)
++++..||++|+++++++. ..|+ ...-. ... .+. ...+..-+ +.+|-|.+ .|. |..
T Consensus 121 ~~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~Fl-NY~----W~~---------- 184 (339)
T cd06547 121 AKRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGIFL-NYW----WTE---------- 184 (339)
T ss_pred HHHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcceeE-ecC----CCc----------
Confidence 9999999999999998632 2222 21110 000 000 11122222 45663322 222 221
Q ss_pred CCCCCCCCcCHHHHHHHHHHcCCCCCcEEEEeeccceeee
Q psy10300 1354 LPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFT 1393 (1490)
Q Consensus 1354 ~~~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~ 1393 (1490)
..++.+++.....|..+.+|.+||-..||...
T Consensus 185 --------~~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 185 --------ESLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred --------chHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 13555666677788899999999999987764
No 56
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.05 E-value=3.4e-05 Score=91.02 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=102.8
Q ss_pred HHHHHHhCCCeEEEEEeC-CCCCCCcchhhhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchh
Q psy10300 812 RVVTLKKKGVKVSLAIGG-WNDSLGGKYSRLVNS-ATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDK 889 (1490)
Q Consensus 812 ~i~~~k~~g~KvllSiGG-~~~s~~~~f~~~~~~-~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~ 889 (1490)
-+.++|++|+||+-.|-= |++ ..+.+..++.+ ++.+..+|+.|+++++.|||||+-||+|... ....+.
T Consensus 51 ~idaAHknGV~Vlgti~~e~~~-~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~--------~~~~~~ 121 (339)
T cd06547 51 WINAAHRNGVPVLGTFIFEWTG-QVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETEL--------GDAEKA 121 (339)
T ss_pred HHHHHHhcCCeEEEEEEecCCC-chHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccC--------CcHHHH
Confidence 467899999999977742 221 12457788888 9999999999999999999999999999432 145788
Q ss_pred hhHHHHHHHHHHHhCCCC--ceE-EEEEC--CChhhHhhh---cChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCC
Q psy10300 890 ESFGLFVRELHQAFKPHG--LLL-SAAVS--PSKQVINAA---YDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEH 961 (1490)
Q Consensus 890 ~~~~~ll~eLr~~l~~~~--~~l-s~a~~--~~~~~~~~~---~~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~ 961 (1490)
+++..|+++|+++++++. ..| -.... .+...++.. .+.+.+ +.+|-| .-||. |...
T Consensus 122 ~~l~~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~ff-~~~D~~---FlNY~--W~~~---------- 185 (339)
T cd06547 122 KRLIAFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKPFF-DVCDGI---FLNYW--WTEE---------- 185 (339)
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHHHH-hhhcce---eEecC--CCcc----------
Confidence 999999999999998632 222 22211 111111111 122222 334422 11222 2221
Q ss_pred CCCCccccCHHHHHHHHHHcCCCCCCeEEEeecccccee
Q psy10300 962 PDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000 (1490)
Q Consensus 962 ~~~~~~~~~~~~~v~~~~~~G~p~~KlvlGlp~yG~~~~ 1000 (1490)
..+.++......|..+.+|.+||-..||+..
T Consensus 186 --------~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 --------SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred --------hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 2445566677788999999999999888754
No 57
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.52 E-value=0.0065 Score=70.54 Aligned_cols=137 Identities=21% Similarity=0.335 Sum_probs=92.8
Q ss_pred HHHHHHHHHhcCCcEEEEE-----------------E---cC--cCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCC
Q psy10300 1201 KFYEKVTALKKKGVKVTLA-----------------I---GG--WNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~Kvlls-----------------i---GG--~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~D 1258 (1490)
...+.++.||++|+-++.- | +| |.+..+..|..- -+++.++- .-.|+.-+.+.|||
T Consensus 62 D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP-~~~evw~Y-~i~IA~Eaa~~GFd 139 (316)
T PF13200_consen 62 DLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNP-YSKEVWDY-NIDIAKEAAKLGFD 139 (316)
T ss_pred CHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCC-CCHHHHHH-HHHHHHHHHHcCCC
Confidence 3567788999999877622 2 11 222222223211 13444444 44588888899999
Q ss_pred eEEEee-cCCCC---CCCCCCCCCcc--chhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhh----hccCChhhhcccCc
Q psy10300 1259 GLDLDW-EYPKC---WQVDCKQGPAS--DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVI----DNAYDIPVMSENLD 1328 (1490)
Q Consensus 1259 GIDIDw-E~P~~---~~~~~~~~~~~--d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~----~~~~d~~~l~~~vD 1328 (1490)
.|.||+ .||.. ........... -.+....||+..|++|++.+..||+.+....... .-|.++..|+++||
T Consensus 140 EIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD 219 (316)
T PF13200_consen 140 EIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVD 219 (316)
T ss_pred EEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCC
Confidence 999998 89971 11122222222 3467889999999999999999999987654333 34679999999999
Q ss_pred EEEEeeccCCC
Q psy10300 1329 WISVMTYDYHG 1339 (1490)
Q Consensus 1329 ~i~vmtYD~~g 1339 (1490)
+|.-|-|-=|-
T Consensus 220 ~IsPMiYPSh~ 230 (316)
T PF13200_consen 220 YISPMIYPSHY 230 (316)
T ss_pred EEEeccccccc
Confidence 99999997553
No 58
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.19 E-value=0.00055 Score=80.05 Aligned_cols=156 Identities=21% Similarity=0.280 Sum_probs=92.3
Q ss_pred HHHHHHhcCCcEEEEEEc-CcCCCCCcchhhhhc-CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccc
Q psy10300 1204 EKVTALKKKGVKVTLAIG-GWNDSAGNKYSRLVN-SQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASD 1281 (1490)
Q Consensus 1204 ~~i~~~k~~g~KvllsiG-G~~~s~~~~f~~~~~-~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d 1281 (1490)
..+..+|++|+|||=.|- .|.++ ...+..|+. ++.....+|+.|+++++-|||||.-|++|.+.. ....
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~-~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~--------~~~~ 116 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGG-AEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLS--------GPED 116 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESST--------TGGG
T ss_pred hhHHHHHhcCceEEEEEEecCCch-HHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCC--------chhH
Confidence 457889999999983332 33332 256788888 888889999999999999999999999995541 1268
Q ss_pred hhhHHHHHHHHHHhcCC-CCcEEEEE--eCCChh-hhhccCCh--hhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCC
Q psy10300 1282 KQGFADLIKELRAAFNP-HDLLLSAA--VSPSKA-VIDNAYDI--PVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALP 1355 (1490)
Q Consensus 1282 ~~~~~~ll~eLr~~l~~-~~~~ls~a--v~~~~~-~~~~~~d~--~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~ 1355 (1490)
..++..||++|+++++. .+..|+.- +..... .+....+- ....+.+|-|.+ +|. |+.
T Consensus 117 ~~~l~~F~~~l~~~~~~~~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl---NY~--W~~------------ 179 (311)
T PF03644_consen 117 AENLIDFLKYLRKEAHENPGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL---NYN--WNP------------ 179 (311)
T ss_dssp HHHHHHHHHHHHHHHHHT-T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE----S----SH------------
T ss_pred HHHHHHHHHHHHHHhhcCCCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE---ecC--CCc------------
Confidence 89999999999999875 22333221 111100 00011100 011234454432 222 111
Q ss_pred CCCCCCcCHHHHHHHHHHcCCCCCcEEEEeecccee
Q psy10300 1356 NDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQS 1391 (1490)
Q Consensus 1356 ~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~ 1391 (1490)
.+++.+++.....+.++.+|.+||-..||.
T Consensus 180 ------~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 180 ------DSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ------HHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ------ccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 137778888888999999999999999988
No 59
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=97.14 E-value=0.00057 Score=79.88 Aligned_cols=155 Identities=17% Similarity=0.281 Sum_probs=87.5
Q ss_pred HHHHHHhCCCeEEEEEe-CCCCCCCcchhhhhc-CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchh
Q psy10300 812 RVVTLKKKGVKVSLAIG-GWNDSLGGKYSRLVN-SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDK 889 (1490)
Q Consensus 812 ~i~~~k~~g~KvllSiG-G~~~s~~~~f~~~~~-~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~ 889 (1490)
-+.++|++|+|||=.|- .|.++ ...+..|+. ++.....+|+.|+++++-|||||.-|++|.+.. .....
T Consensus 47 widaAHrnGV~vLGTiife~~~~-~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~--------~~~~~ 117 (311)
T PF03644_consen 47 WIDAAHRNGVKVLGTIIFEWGGG-AEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLS--------GPEDA 117 (311)
T ss_dssp HHHHHHHTT--EEEEEEEEEE---HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESST--------TGGGH
T ss_pred hHHHHHhcCceEEEEEEecCCch-HHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCC--------chhHH
Confidence 47788999999973332 23322 245677887 788888999999999999999999999995531 12678
Q ss_pred hhHHHHHHHHHHHhCC-CCceEEEE--ECC-ChhhHhhhcChh--hhcccCceEEeeccccCCCCCCCCCCCCCCCCCCC
Q psy10300 890 ESFGLFVRELHQAFKP-HGLLLSAA--VSP-SKQVINAAYDVK--ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPD 963 (1490)
Q Consensus 890 ~~~~~ll~eLr~~l~~-~~~~ls~a--~~~-~~~~~~~~~~~~--~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~ 963 (1490)
+.+..|+++|+++.++ .+..|.-- +.. ....++..+.-. ...+.+|-|.+ ||. |.
T Consensus 118 ~~l~~F~~~l~~~~~~~~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl---NY~--W~-------------- 178 (311)
T PF03644_consen 118 ENLIDFLKYLRKEAHENPGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL---NYN--WN-------------- 178 (311)
T ss_dssp HHHHHHHHHHHHHHHHT-T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE----S----S--------------
T ss_pred HHHHHHHHHHHHHhhcCCCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE---ecC--CC--------------
Confidence 8999999999999875 11222211 000 000111110000 00112222111 111 11
Q ss_pred CCccccCHHHHHHHHHHcCCCCCCeEEEeeccccc
Q psy10300 964 DDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQA 998 (1490)
Q Consensus 964 ~~~~~~~~~~~v~~~~~~G~p~~KlvlGlp~yG~~ 998 (1490)
..++..+++.....|.++.+|.+|+-..||+
T Consensus 179 ----~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 ----PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ----HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ----cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 1246777888888999999999999998887
No 60
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.93 E-value=0.004 Score=73.23 Aligned_cols=136 Identities=18% Similarity=0.238 Sum_probs=88.9
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEe-ecCCCC-CCCC-------------CCCCCccc-------hhhHHHHHHHHH
Q psy10300 1236 NSQQARSKFIAHVVNFILEHNFDGLDLD-WEYPKC-WQVD-------------CKQGPASD-------KQGFADLIKELR 1293 (1490)
Q Consensus 1236 ~~~~~r~~fi~si~~~l~~~g~DGIDID-wE~P~~-~~~~-------------~~~~~~~d-------~~~~~~ll~eLr 1293 (1490)
..++.|+-.++-+.+++++|++|||.|| .-||.. .+.+ .......| +++...||++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999 566532 1110 01112344 678899999999
Q ss_pred HhcCCCC--cEEEEEeCCCh--hhhhccCChhhh--cccCcEEEEeeccC-CCCCCCCCCCCCCCCCCCCCCCCCcCHHH
Q psy10300 1294 AAFNPHD--LLLSAAVSPSK--AVIDNAYDIPVM--SENLDWISVMTYDY-HGQWDKKTGHVAPMYALPNDTTPTFNANY 1366 (1490)
Q Consensus 1294 ~~l~~~~--~~ls~av~~~~--~~~~~~~d~~~l--~~~vD~i~vmtYD~-~g~w~~~~g~~spl~~~~~~~~~~~~i~~ 1366 (1490)
+++++.+ +.+++++.+.. .+.....|...- ..++|+|..|.|-. .+. ....++.
T Consensus 214 ~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~-------------------~~~~~~~ 274 (311)
T PF02638_consen 214 DAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH-------------------FTAPYEQ 274 (311)
T ss_pred HHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccch-------------------hHHHHHH
Confidence 9998644 56666543322 111112244333 35899999999964 211 1123666
Q ss_pred HHHHHHHcCCCC-CcEEEEeeccce
Q psy10300 1367 SLHYWVSHGADR-KKVIFGMPMYGQ 1390 (1490)
Q Consensus 1367 ~v~~~~~~g~p~-~KlvlGlp~YG~ 1390 (1490)
.+..|.+.-.+. -+|.+|+.+|-.
T Consensus 275 ~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 275 LAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHhhcCCCceEEEccCcCCC
Confidence 777777654443 499999999853
No 61
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.61 E-value=0.025 Score=59.53 Aligned_cols=115 Identities=20% Similarity=0.345 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHHHHHc-CCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHh
Q psy10300 844 SATARQRFIEHVVKFLLKY-QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVIN 922 (1490)
Q Consensus 844 ~~~~r~~fi~s~~~~l~~y-gfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~ 922 (1490)
+++..++..+.+.++-... .+.||.||+..+. .....|..||++||++|.+ ++-||++.-+.- .
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t-----------~~L~~Y~~fL~~LR~~LP~-~~~LSIT~L~dW---~ 86 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAAT-----------SRLPAYAQFLQQLRQRLPP-DYRLSITALPDW---L 86 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCccc-----------cchHHHHHHHHHHHHhCCC-CceEeeEEehhh---h
Confidence 4444555555555554443 5899999999553 5778999999999999976 688888865432 2
Q ss_pred hhcC-hhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHHHHHHHHHcCCCCCCeEEEeeccc
Q psy10300 923 AAYD-VKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYG 996 (1490)
Q Consensus 923 ~~~~-~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~~~G~p~~KlvlGlp~yG 996 (1490)
..-+ +..+...+|-+.+|+|. |- ..+ -+....+..+.... --.-+|+|.||
T Consensus 87 ~~~~~L~~L~~~VDE~VlQ~yq--Gl-------~d~-----------~~~~~yl~~l~~l~---~PFriaLp~yG 138 (181)
T PF11340_consen 87 SSPDWLNALPGVVDELVLQVYQ--GL-------FDP-----------PNYARYLPRLARLT---LPFRIALPQYG 138 (181)
T ss_pred cCchhhhhHhhcCCeeEEEeec--CC-------CCH-----------HHHHHHHHHHhcCC---CCeEEecCcCC
Confidence 2224 88899999999999992 11 110 12333444444333 55789999999
No 62
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=96.50 E-value=0.016 Score=68.32 Aligned_cols=137 Identities=18% Similarity=0.272 Sum_probs=90.2
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCceeEEE-eeCCCCCCCCCc------------cccchhhh-------HHHHHHHHHHHH
Q psy10300 212 SDRESRLNFISSVLEMFDMYKFDGLDLN-VKDPALNDEDDD------------DLESIANE-------RSDFSTFIQELS 271 (1490)
Q Consensus 212 ~~~~~r~~fi~siv~~l~~~~fDGvdld-we~p~~~~~~~~------------~~~~~~~d-------~~~f~~ll~eLr 271 (1490)
+.++.|+-.++-+.+.++.|++|||+|| .-||........ .....++| +++...||++|+
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~ 213 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIY 213 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999 667643221100 00113345 789999999999
Q ss_pred HHHhhcC--cEEEEEeccccc-c-cccccChhhhc--ccceeeeeecccCCCCCCCcCcccCCcccCCcccccccccccH
Q psy10300 272 STLRRNN--YQLTLTSPGVID-R-KTSLVDISVVA--PLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNI 345 (1490)
Q Consensus 272 ~~~~~~~--~~ls~~v~~~~~-~-~~~~yd~~~l~--~~vD~i~lmtyd~~~~~~~~~~~~~~~~spl~~~~~~~~~~~v 345 (1490)
++++..+ +.++++.-+... . ....-|...-. .++|+|..|.|-..-.. . ....
T Consensus 214 ~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~~---------~------------~~~~ 272 (311)
T PF02638_consen 214 DAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFSH---------F------------TAPY 272 (311)
T ss_pred HHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccch---------h------------HHHH
Confidence 9999876 455554332221 0 11222444433 68999999999431000 1 1246
Q ss_pred HHHHHHHHHcCCCC-CcEEEeeeee
Q psy10300 346 ESAVYNWIKKGARP-EQIIIGIPFF 369 (1490)
Q Consensus 346 ~~~v~~~~~~g~~~-~Klvlgvp~y 369 (1490)
+..+..|.+.-.+. -+|.+|+.+|
T Consensus 273 ~~~~~~w~~~~~~~~v~ly~G~~~y 297 (311)
T PF02638_consen 273 EQLAKWWAKQVKPTNVHLYIGLALY 297 (311)
T ss_pred HHHHHHHHHhhcCCCceEEEccCcC
Confidence 77888888766553 4899999887
No 63
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=96.50 E-value=0.032 Score=58.70 Aligned_cols=84 Identities=18% Similarity=0.352 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHHHHH-cCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhh
Q psy10300 1237 SQQARSKFIAHVVNFILE-HNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVID 1315 (1490)
Q Consensus 1237 ~~~~r~~fi~si~~~l~~-~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~ 1315 (1490)
+++..++..+.+.++-.. +...||.||+..+ ......|..||++||++|.+ ++.||++.=+.-.
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~-----------t~~L~~Y~~fL~~LR~~LP~-~~~LSIT~L~dW~--- 86 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAA-----------TSRLPAYAQFLQQLRQRLPP-DYRLSITALPDWL--- 86 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcc-----------ccchHHHHHHHHHHHHhCCC-CceEeeEEehhhh---
Confidence 455555555555555544 3689999999954 35678999999999999965 6888888654322
Q ss_pred ccC-ChhhhcccCcEEEEeec
Q psy10300 1316 NAY-DIPVMSENLDWISVMTY 1335 (1490)
Q Consensus 1316 ~~~-d~~~l~~~vD~i~vmtY 1335 (1490)
+.- -+..|...||-+.+|+|
T Consensus 87 ~~~~~L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 87 SSPDWLNALPGVVDELVLQVY 107 (181)
T ss_pred cCchhhhhHhhcCCeeEEEee
Confidence 222 37888899999999999
No 64
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=95.75 E-value=0.34 Score=56.59 Aligned_cols=137 Identities=22% Similarity=0.320 Sum_probs=87.9
Q ss_pred HHHHHHHHHhCCCeEEE-----------------EEe---C--CCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCe
Q psy10300 809 FYERVVTLKKKGVKVSL-----------------AIG---G--WNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866 (1490)
Q Consensus 809 ~~~~i~~~k~~g~Kvll-----------------SiG---G--~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDG 866 (1490)
+.+.++.||++|+-++- +|- | |.+..+..|-.- -+++.+ ...-.|+.-+-+.|||.
T Consensus 63 ~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP-~~~evw-~Y~i~IA~Eaa~~GFdE 140 (316)
T PF13200_consen 63 LKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNP-YSKEVW-DYNIDIAKEAAKLGFDE 140 (316)
T ss_pred HHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCC-CCHHHH-HHHHHHHHHHHHcCCCE
Confidence 34567899999987763 331 1 222212222111 123333 34445777777889999
Q ss_pred EEEee-cCCCCC---CCCCCCCCCc--hhhhHHHHHHHHHHHhCCCCceEEEEECCChhhH----hhhcChhhhcccCce
Q psy10300 867 LDLDW-EYPTCW---QVNCDAGPDS--DKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVI----NAAYDVKALSESLDW 936 (1490)
Q Consensus 867 vDiDw-E~P~~~---~~~~~~~~~~--d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~----~~~~~~~~l~~~vD~ 936 (1490)
|.||+ .||... +......... -.+....||+..|+++++.+..||+.+-+..... .-|-++..|++++|+
T Consensus 141 IqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~~a~~vD~ 220 (316)
T PF13200_consen 141 IQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEKIAEYVDY 220 (316)
T ss_pred EEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHHHhhhCCE
Confidence 99996 578611 1112222222 3367889999999999999999999986543322 235689999999999
Q ss_pred EEeeccccCCC
Q psy10300 937 ISVMTYDYHGQ 947 (1490)
Q Consensus 937 i~vmtYD~~g~ 947 (1490)
|.-|-|=-|-.
T Consensus 221 IsPMiYPSh~~ 231 (316)
T PF13200_consen 221 ISPMIYPSHYG 231 (316)
T ss_pred EEecccccccC
Confidence 99999965543
No 65
>KOG2331|consensus
Probab=94.50 E-value=0.29 Score=57.18 Aligned_cols=89 Identities=15% Similarity=0.300 Sum_probs=72.1
Q ss_pred HHHHhcCCcEEEEE-EcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhh
Q psy10300 1206 VTALKKKGVKVTLA-IGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQG 1284 (1490)
Q Consensus 1206 i~~~k~~g~Kvlls-iGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~ 1284 (1490)
.+.+|.+|+||+=. |-.|+.+ ...-..+++++++.+..++.++++.+-.||||--|+.| +.+......+
T Consensus 117 tn~AHrHGV~vlGTFItEw~eg-~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiE---------n~i~~~~i~~ 186 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDEG-KATCKEFLATEESVEMTVERLVELARFFGFDGWLINIE---------NKIDLAKIPN 186 (526)
T ss_pred cchhhhcCceeeeeEEEEeccc-hhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEee---------eccChhhCcc
Confidence 34578999999944 4567654 35678889999999999999999999999999999999 4556667789
Q ss_pred HHHHHHHHHHhcCC---CCcEEE
Q psy10300 1285 FADLIKELRAAFNP---HDLLLS 1304 (1490)
Q Consensus 1285 ~~~ll~eLr~~l~~---~~~~ls 1304 (1490)
+..|++.|.+++++ .++.|-
T Consensus 187 l~~F~~~Lt~~~~~~~p~~~ViW 209 (526)
T KOG2331|consen 187 LIQFVSHLTKVLHSSVPGGLVIW 209 (526)
T ss_pred HHHHHHHHHHHHhhcCCCceEEE
Confidence 99999999999985 345543
No 66
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.40 E-value=0.84 Score=53.42 Aligned_cols=126 Identities=16% Similarity=0.154 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCeEE--EEEeCCCCCCCcchhh-----------------------hhcCHHHHHHHHHHHHHHHHHcCCC
Q psy10300 811 ERVVTLKKKGVKVS--LAIGGWNDSLGGKYSR-----------------------LVNSATARQRFIEHVVKFLLKYQFD 865 (1490)
Q Consensus 811 ~~i~~~k~~g~Kvl--lSiGG~~~s~~~~f~~-----------------------~~~~~~~r~~fi~s~~~~l~~ygfD 865 (1490)
+.|..+|.+|.||+ ||||-+... ...|.+ -+.+++.|+-+.+. ++.+.+-|||
T Consensus 85 ~~i~~Lk~~g~~viaYlSvGe~E~~-R~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGfD 162 (315)
T TIGR01370 85 EEIVRAAAAGRWPIAYLSIGAAEDY-RFYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGFD 162 (315)
T ss_pred HHHHHHHhCCcEEEEEEEchhcccc-chhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCCC
Confidence 56889999999997 899974322 011111 12356677767766 5677788999
Q ss_pred eEEEeecCC-CCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcChhhhcccCceEEeec
Q psy10300 866 GLDLDWEYP-TCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMT 941 (1490)
Q Consensus 866 GvDiDwE~P-~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~i~vmt 941 (1490)
||.||.=-- ..+... ....+...+.++.|+++|.+..+++..-+.+.+.-+..... ++-..+...+|.|+.-+
T Consensus 163 GvfLD~lDsy~~~~~~-~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 163 GVYLDLIDAFEYWAEN-GDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred eEeeccchhhhhhccc-CCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh--ccccchhhhceEEEecc
Confidence 999995300 000000 01123445678888888855554433223333222222221 11123556788887755
No 67
>KOG2331|consensus
Probab=92.73 E-value=0.46 Score=55.55 Aligned_cols=83 Identities=19% Similarity=0.312 Sum_probs=68.2
Q ss_pred HHHHHhCCCeEEEE-EeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhh
Q psy10300 813 VVTLKKKGVKVSLA-IGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKES 891 (1490)
Q Consensus 813 i~~~k~~g~KvllS-iGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~ 891 (1490)
.+.++.+|+||+=. |--|+.+ .+.-.+++++++..+..++.++++.+-.||||-=|+.| +........+
T Consensus 117 tn~AHrHGV~vlGTFItEw~eg-~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiE---------n~i~~~~i~~ 186 (526)
T KOG2331|consen 117 TNTAHRHGVKVLGTFITEWDEG-KATCKEFLATEESVEMTVERLVELARFFGFDGWLINIE---------NKIDLAKIPN 186 (526)
T ss_pred cchhhhcCceeeeeEEEEeccc-hhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEee---------eccChhhCcc
Confidence 34678889999854 4557654 35678899999999999999999999999999999999 3445566778
Q ss_pred HHHHHHHHHHHhCC
Q psy10300 892 FGLFVRELHQAFKP 905 (1490)
Q Consensus 892 ~~~ll~eLr~~l~~ 905 (1490)
+..|++.|.+++++
T Consensus 187 l~~F~~~Lt~~~~~ 200 (526)
T KOG2331|consen 187 LIQFVSHLTKVLHS 200 (526)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999975
No 68
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=91.19 E-value=2.7 Score=47.83 Aligned_cols=199 Identities=19% Similarity=0.275 Sum_probs=114.0
Q ss_pred CccEEEE-eeEEecCCCcE---eccCCCcchhhHHHHHHHH-HHhcC-CcEEEEEE--cCcCCCC-------------Cc
Q psy10300 1171 LCTHVIY-GFAVLDTDQLV---IKPHDTWADLDNKFYEKVT-ALKKK-GVKVTLAI--GGWNDSA-------------GN 1229 (1490)
Q Consensus 1171 ~~ThIi~-af~~i~~~~~~---~~~~~~~~~~~~~~~~~i~-~~k~~-g~Kvllsi--GG~~~s~-------------~~ 1229 (1490)
+.++|.+ +|+..+++|.. .++. .+..+...++..+. +++.+ |+||..-. -+|.-.. ..
T Consensus 30 ~~~tV~Lqaf~d~~gdg~~~~~YFpn-r~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPDGDGNADAVYFPN-RHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCCCCCceeeEEcCC-CCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 4567766 78877777743 3333 34566677777776 66644 89987322 1211100 01
Q ss_pred chhhhhc-CHHHHHHHHHHHHHHHHHc-CCCeEEE-------eecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCC-
Q psy10300 1230 KYSRLVN-SQQARSKFIAHVVNFILEH-NFDGLDL-------DWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH- 1299 (1490)
Q Consensus 1230 ~f~~~~~-~~~~r~~fi~si~~~l~~~-g~DGIDI-------DwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~- 1299 (1490)
.+.++.- +++.| +.|++|.+=|.+| .||||=| |+|.|...+.+ ........++.|..+|++..+..
T Consensus 109 ~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~---~~~~Kt~~Li~ft~eL~~~v~~~r 184 (294)
T PF14883_consen 109 GYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNP---ADRQKTRALIDFTMELAAAVRRYR 184 (294)
T ss_pred CceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccCh---hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 2222222 44444 5688888888888 8999988 34433211000 00122346778888888877642
Q ss_pred -------CcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCCCcCHHHHHHHHH
Q psy10300 1300 -------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWV 1372 (1490)
Q Consensus 1300 -------~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~~~~i~~~v~~~~ 1372 (1490)
++.-...+.|....+ -+.++..+.+.-||.-||++-|..+-. .+...+...++.+.
T Consensus 185 p~lkTARNiya~pvl~P~se~W-fAQnl~~fl~~YD~taimAMPymE~~~----------------~~~~WL~~Lv~~v~ 247 (294)
T PF14883_consen 185 PDLKTARNIYAEPVLNPESEAW-FAQNLDDFLKAYDYTAIMAMPYMEQAE----------------DPEQWLAQLVDAVA 247 (294)
T ss_pred ccchhhhcccccccCCcchhhH-HHHhHHHHHHhCCeeheeccchhcccc----------------CHHHHHHHHHHHHH
Confidence 222222223322211 235788888889999999988764410 12223566677776
Q ss_pred HcCCCCCcEEEEeeccceeee
Q psy10300 1373 SHGADRKKVIFGMPMYGQSFT 1393 (1490)
Q Consensus 1373 ~~g~p~~KlvlGlp~YG~~~~ 1393 (1490)
......+|+|+-|... .|+
T Consensus 248 ~~p~~l~KtvFELQa~--dwr 266 (294)
T PF14883_consen 248 ARPGGLDKTVFELQAV--DWR 266 (294)
T ss_pred hcCCcccceEEEEecc--CCc
Confidence 7766789999988654 464
No 69
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=90.04 E-value=1.4 Score=51.69 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=70.6
Q ss_pred HHHHHHHhcCCcEEE--EEEcCcCCCCCcchhh-----------------------hhcCHHHHHHHHHHHHHHHHHcCC
Q psy10300 1203 YEKVTALKKKGVKVT--LAIGGWNDSAGNKYSR-----------------------LVNSQQARSKFIAHVVNFILEHNF 1257 (1490)
Q Consensus 1203 ~~~i~~~k~~g~Kvl--lsiGG~~~s~~~~f~~-----------------------~~~~~~~r~~fi~si~~~l~~~g~ 1257 (1490)
.+.|..+|.+|.||+ ||||-+.... ..|.. =+.+++-|+-+++. ++.+.+.||
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E~~R-~y~~~~~~~~~~~~l~~~n~~W~g~~~vd~~~~~W~~il~~r-l~~l~~kGf 161 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAEDYR-FYWQKGWKVNAPAWLGNEDPDWPGNYDVKYWDPEWKAIAFSY-LDRVIAQGF 161 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhccccc-hhhhhhhhcCCHHHhCCCCCCCCCceeEecccHHHHHHHHHH-HHHHHHcCC
Confidence 356888899999998 8999754331 11111 02356677766665 677778899
Q ss_pred CeEEEeec--CCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCChhhhcccCcEEEEee
Q psy10300 1258 DGLDLDWE--YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMT 1334 (1490)
Q Consensus 1258 DGIDIDwE--~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmt 1334 (1490)
|||.||.- |-. +. ......+...+.++.|+++|.+.+++++.-+.+.+.-...... ++-..+...+|.|+.-+
T Consensus 162 DGvfLD~lDsy~~-~~-~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~II~NnG~eil~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 162 DGVYLDLIDAFEY-WA-ENGDNRPGAAAEMIAFVCEIAAYARAQNPQFVIIPQNGEELLR--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred CeEeeccchhhhh-hc-ccCCcchhhHHHHHHHHHHHHHHHHHHCCCEEEEecCchhhhh--ccccchhhhceEEEecc
Confidence 99999963 110 00 0001124455778889999865555443333333222222221 11123566788877754
No 70
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=89.65 E-value=0.49 Score=40.39 Aligned_cols=21 Identities=33% Similarity=0.691 Sum_probs=18.9
Q ss_pred CccEEecCCeEEEEecCCCcc
Q psy10300 561 RSFLICSHGNLLKQSCGPSLL 581 (1490)
Q Consensus 561 ~~yy~C~~g~~~~~~Cp~g~~ 581 (1490)
.+|-+|.+|.+....||+|+.
T Consensus 35 G~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 35 GSFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CCEEEcCCCcEEEeeCCCCCE
Confidence 368999999999999999985
No 71
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=85.43 E-value=2 Score=43.79 Aligned_cols=62 Identities=21% Similarity=0.449 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCeEEE--EEeCCCCC-------------CC----------cchhhhhcCHHHHHHHHHHHHHHHHHcC
Q psy10300 809 FYERVVTLKKKGVKVSL--AIGGWNDS-------------LG----------GKYSRLVNSATARQRFIEHVVKFLLKYQ 863 (1490)
Q Consensus 809 ~~~~i~~~k~~g~Kvll--SiGG~~~s-------------~~----------~~f~~~~~~~~~r~~fi~s~~~~l~~yg 863 (1490)
+.+.|.++|++|++|++ +++ |... .| ..+..+.-+..-++-++..|.+++++|+
T Consensus 46 lge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y~ 124 (132)
T PF14871_consen 46 LGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRYD 124 (132)
T ss_pred HHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcCC
Confidence 45678999999999985 444 2211 01 1144455566778888899999999999
Q ss_pred CCeEEEee
Q psy10300 864 FDGLDLDW 871 (1490)
Q Consensus 864 fDGvDiDw 871 (1490)
+|||=|||
T Consensus 125 ~DGiF~D~ 132 (132)
T PF14871_consen 125 VDGIFFDI 132 (132)
T ss_pred CCEEEecC
Confidence 99999997
No 72
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=79.89 E-value=5.2 Score=40.83 Aligned_cols=63 Identities=17% Similarity=0.362 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCCcEEEEEE--cCcCCC-------------CC----------cchhhhhcCHHHHHHHHHHHHHHHHHc
Q psy10300 1201 KFYEKVTALKKKGVKVTLAI--GGWNDS-------------AG----------NKYSRLVNSQQARSKFIAHVVNFILEH 1255 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~Kvllsi--GG~~~s-------------~~----------~~f~~~~~~~~~r~~fi~si~~~l~~~ 1255 (1490)
-+.+.|+++|++|++|++-+ + |... .+ ..+..+--|..-++.++..|-+++++|
T Consensus 45 llge~v~a~h~~Girv~ay~~~~-~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~y 123 (132)
T PF14871_consen 45 LLGEQVEACHERGIRVPAYFDFS-WDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDRY 123 (132)
T ss_pred HHHHHHHHHHHCCCEEEEEEeee-cChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHcC
Confidence 35788999999999999544 3 2211 01 114445556778888889998899999
Q ss_pred CCCeEEEee
Q psy10300 1256 NFDGLDLDW 1264 (1490)
Q Consensus 1256 g~DGIDIDw 1264 (1490)
++|||=|||
T Consensus 124 ~~DGiF~D~ 132 (132)
T PF14871_consen 124 DVDGIFFDI 132 (132)
T ss_pred CCCEEEecC
Confidence 999999987
No 73
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=79.01 E-value=34 Score=39.25 Aligned_cols=200 Identities=18% Similarity=0.241 Sum_probs=110.9
Q ss_pred CccEEEE-EEEEEeCCCcE---EEcCCchhhhhHHHHHHHH-HHHhC-CCeEEEEEe--CCCCCCC-------------c
Q psy10300 778 LCTHIVY-GFAVLDSENLI---IKAHDSWADFDNRFYERVV-TLKKK-GVKVSLAIG--GWNDSLG-------------G 836 (1490)
Q Consensus 778 ~~ThIi~-aFa~~~~~~~~---i~~~d~~~~~~~~~~~~i~-~~k~~-g~KvllSiG--G~~~s~~-------------~ 836 (1490)
++++|++ +|+..+ ++|. +.+...+..+...++.++. .++.+ |+||..-+. +|.-... .
T Consensus 30 ~~~tV~Lqaf~d~~-gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~~ 108 (294)
T PF14883_consen 30 GINTVYLQAFADPD-GDGNADAVYFPNRHLPVRADLFNRVAWQLRTRAGVKVYAWMPVLAFDLPKVKRADEVRTDRPDPD 108 (294)
T ss_pred CCCEEEEEeeeCCC-CCCceeeEEcCCCCCchHHHHHHHHHHHHhhhhCCEEEEeeehhhccCCCcchhhhccccCCCCC
Confidence 3455544 666555 3443 3344456667777888887 67754 999963222 2211100 0
Q ss_pred chhhhh-cCHHHHHHHHHHHHHHHHHc-CCCeEEE-------eecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCC-
Q psy10300 837 KYSRLV-NSATARQRFIEHVVKFLLKY-QFDGLDL-------DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH- 906 (1490)
Q Consensus 837 ~f~~~~-~~~~~r~~fi~s~~~~l~~y-gfDGvDi-------DwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~- 906 (1490)
.+..+- -++++ .+.|.+|-+=|-+| .||||=| |+|.|.....+ ........++.|..||++..+..
T Consensus 109 ~y~RLSPf~p~~-r~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~---~~~~Kt~~Li~ft~eL~~~v~~~r 184 (294)
T PF14883_consen 109 GYRRLSPFDPEA-RQIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNP---ADRQKTRALIDFTMELAAAVRRYR 184 (294)
T ss_pred CceecCCCCHHH-HHHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccCh---hhHHHHHHHHHHHHHHHHHHHHhC
Confidence 011111 14444 44677788888888 7999988 45644311100 00122345788888888877532
Q ss_pred -------CceEEEEECCChhhHhhhcChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCccccCHHHHHHHHH
Q psy10300 907 -------GLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWM 979 (1490)
Q Consensus 907 -------~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~~ 979 (1490)
+++-...+.|....+-+ -++....+..||.-+|++=|+.. .. .+ .-.....++...
T Consensus 185 p~lkTARNiya~pvl~P~se~WfA-Qnl~~fl~~YD~taimAMPymE~----~~--~~----------~~WL~~Lv~~v~ 247 (294)
T PF14883_consen 185 PDLKTARNIYAEPVLNPESEAWFA-QNLDDFLKAYDYTAIMAMPYMEQ----AE--DP----------EQWLAQLVDAVA 247 (294)
T ss_pred ccchhhhcccccccCCcchhhHHH-HhHHHHHHhCCeeheeccchhcc----cc--CH----------HHHHHHHHHHHH
Confidence 22222233343332222 26788888899999999865432 11 11 113455566666
Q ss_pred HcCCCCCCeEEEeeccccceec
Q psy10300 980 KKGAPSRKLVMGMPMYGQAFSL 1001 (1490)
Q Consensus 980 ~~G~p~~KlvlGlp~yG~~~~~ 1001 (1490)
....+.+|+|+-|.+ +.|..
T Consensus 248 ~~p~~l~KtvFELQa--~dwr~ 267 (294)
T PF14883_consen 248 ARPGGLDKTVFELQA--VDWRT 267 (294)
T ss_pred hcCCcccceEEEEec--cCCcc
Confidence 666678999999986 55654
No 74
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=78.28 E-value=6.3 Score=44.43 Aligned_cols=94 Identities=16% Similarity=0.216 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEee-cCCCCCCC-C-----CCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhh-
Q psy10300 1243 KFIAHVVNFILEHNFDGLDLDW-EYPKCWQV-D-----CKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVI- 1314 (1490)
Q Consensus 1243 ~fi~si~~~l~~~g~DGIDIDw-E~P~~~~~-~-----~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~- 1314 (1490)
+.--+|++-+.+.|||-|.+|+ .||..-+. + -+...-+..+.+..||.--|++|. .-+|+.+.......
T Consensus 196 eYNvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~DIYG~nGw~~ 272 (400)
T COG1306 196 EYNVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPISADIYGQNGWSS 272 (400)
T ss_pred hhhHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceEEEeecccCccC
Confidence 3445688889999999999998 78873210 0 001111233567889999999986 45777765432221
Q ss_pred ---hccCChhhhcccCcEEEEeeccCCC
Q psy10300 1315 ---DNAYDIPVMSENLDWISVMTYDYHG 1339 (1490)
Q Consensus 1315 ---~~~~d~~~l~~~vD~i~vmtYD~~g 1339 (1490)
..+.++..|++|||.|.-|.|--|-
T Consensus 273 t~~~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 273 TDMALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred CcchhhhhHHHHHhhhhhcccccccccc
Confidence 2356899999999999999998653
No 75
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=78.15 E-value=8.3 Score=45.16 Aligned_cols=109 Identities=10% Similarity=0.217 Sum_probs=61.4
Q ss_pred hHHHhhhhhcCCCceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHH
Q psy10300 184 YKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDF 263 (1490)
Q Consensus 184 ~~~~~~LK~~np~lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f 263 (1490)
.+.+...++..++..++++|+|. ++ ..++ .+++.+.++|+|+|+|++--|..... .....+.+..
T Consensus 86 ~~~i~~~~~~~~~~pvi~si~g~------~~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~-----~~~~~~~~~~ 150 (289)
T cd02810 86 LQDIAKAKKEFPGQPLIASVGGS------SK---EDYV-ELARKIERAGAKALELNLSCPNVGGG-----RQLGQDPEAV 150 (289)
T ss_pred HHHHHHHHhccCCCeEEEEeccC------CH---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCC-----cccccCHHHH
Confidence 33444444433578899999884 22 1233 34556677799999999987754321 1112344556
Q ss_pred HHHHHHHHHHHhhcCcEEEEEecccccccccccCh-hhhcc-cceeeeee
Q psy10300 264 STFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDI-SVVAP-LVDLILLK 311 (1490)
Q Consensus 264 ~~ll~eLr~~~~~~~~~ls~~v~~~~~~~~~~yd~-~~l~~-~vD~i~lm 311 (1490)
.++++++|+++ ++.|++-+.+... .+...++ +.+.+ -+|+|.+.
T Consensus 151 ~eiv~~vr~~~---~~pv~vKl~~~~~-~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 151 ANLLKAVKAAV---DIPLLVKLSPYFD-LEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHcc---CCCEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 67777777766 4556666665432 1111112 22222 27888774
No 76
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=75.51 E-value=22 Score=41.57 Aligned_cols=110 Identities=16% Similarity=0.292 Sum_probs=64.0
Q ss_pred HHHHHHHHHHh--CCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCC
Q psy10300 808 RFYERVVTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGP 885 (1490)
Q Consensus 808 ~~~~~i~~~k~--~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~ 885 (1490)
.+.+++...++ .+..++++|+|.+ . +.+++ +++.+.++|+|+|+|++--|.... ....
T Consensus 84 ~~~~~i~~~~~~~~~~pvi~si~g~~-------------~---~~~~~-~a~~~~~~G~d~ielN~~cP~~~~---~~~~ 143 (289)
T cd02810 84 VWLQDIAKAKKEFPGQPLIASVGGSS-------------K---EDYVE-LARKIERAGAKALELNLSCPNVGG---GRQL 143 (289)
T ss_pred HHHHHHHHHHhccCCCeEEEEeccCC-------------H---HHHHH-HHHHHHHhCCCEEEEEcCCCCCCC---Cccc
Confidence 45566766665 3789999999852 1 12333 345566779999999998775211 0011
Q ss_pred CchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcC-hhhhcc-cCceEEeec
Q psy10300 886 DSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYD-VKALSE-SLDWISVMT 941 (1490)
Q Consensus 886 ~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~-~~~l~~-~vD~i~vmt 941 (1490)
..+.+....+++++|+.+ ++-|++-+.+.... +.... .+.+.+ -+|+|.+..
T Consensus 144 ~~~~~~~~eiv~~vr~~~---~~pv~vKl~~~~~~-~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 144 GQDPEAVANLLKAVKAAV---DIPLLVKLSPYFDL-EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred ccCHHHHHHHHHHHHHcc---CCCEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEEc
Confidence 234556778888888876 35566665553221 01111 122222 379998853
No 77
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=75.18 E-value=7.5 Score=49.70 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCc-CCCCC-------cchhh----------hhcCH---HHHHHHHHHHHHHHHHcCC
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGGW-NDSAG-------NKYSR----------LVNSQ---QARSKFIAHVVNFILEHNF 1257 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG~-~~s~~-------~~f~~----------~~~~~---~~r~~fi~si~~~l~~~g~ 1257 (1490)
...|.+.|.++|++|++|+|=+=-. ....+ ..|.. -..++ ..|+-+++++.-++++|++
T Consensus 159 ~~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~i 238 (542)
T TIGR02402 159 PDDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHF 238 (542)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 3578899999999999999875211 00000 01110 02234 8889999999999999999
Q ss_pred CeEEEeec
Q psy10300 1258 DGLDLDWE 1265 (1490)
Q Consensus 1258 DGIDIDwE 1265 (1490)
||+-||--
T Consensus 239 DGfR~D~~ 246 (542)
T TIGR02402 239 DGLRLDAV 246 (542)
T ss_pred cEEEEeCH
Confidence 99999964
No 78
>PRK14706 glycogen branching enzyme; Provisional
Probab=73.62 E-value=20 Score=46.81 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc----CcC--------CCC---------C--cchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG----GWN--------DSA---------G--NKYSR---LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG----G~~--------~s~---------~--~~f~~---~~~~~~~r~~fi~si~~~l 1252 (1490)
.+.|...|.++|++|++|+|=+= |+. ++. + ..|.. -..+++.|+-+++++.-+|
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~ 295 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWL 295 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999997652 110 000 0 00111 1347899999999999999
Q ss_pred HHcCCCeEEEee
Q psy10300 1253 LEHNFDGLDLDW 1264 (1490)
Q Consensus 1253 ~~~g~DGIDIDw 1264 (1490)
+++++||+-||-
T Consensus 296 ~e~~iDG~R~Da 307 (639)
T PRK14706 296 QDFHVDGLRVDA 307 (639)
T ss_pred HHhCCCeEEEee
Confidence 999999999994
No 79
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=73.33 E-value=70 Score=38.90 Aligned_cols=133 Identities=14% Similarity=0.195 Sum_probs=75.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--cCcCCCCC---------c-----------chhhhhcC---HHHHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--GGWNDSAG---------N-----------KYSRLVNS---QQARSKFIAHVVNFILE 1254 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--GG~~~s~~---------~-----------~f~~~~~~---~~~r~~fi~si~~~l~~ 1254 (1490)
..+.+.+..+|++|.|+++-| +|-..... . ...+.+.. .+-.+.|++.. ..+++
T Consensus 83 ~~~~~l~~~vh~~G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~~ 161 (370)
T cd02929 83 RNLAAMTDAVHKHGALAGIELWHGGAHAPNRESRETPLGPSQLPSEFPTGGPVQAREMDKDDIKRVRRWYVDAA-LRARD 161 (370)
T ss_pred HHHHHHHHHHHHCCCeEEEecccCCCCCCccCCCCCccCCCCCCCCccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHH
Confidence 456667778899999998776 23211100 0 00011111 13455666644 45566
Q ss_pred cCCCeEEEeecC---------CCC-CCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCCChhhhhc-cCC---
Q psy10300 1255 HNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSKAVIDN-AYD--- 1319 (1490)
Q Consensus 1255 ~g~DGIDIDwE~---------P~~-~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~~~~~~~~-~~d--- 1319 (1490)
-|||||+|.--+ |.. ...+..+++-+++..|. ..|+++|++... ++.|.+-+++....... +.+
T Consensus 162 aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~-~~~v~vRls~~~~~~~~g~~~~~e 240 (370)
T cd02929 162 AGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGD-DCAVATRFSVDELIGPGGIESEGE 240 (370)
T ss_pred cCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCC-CceEEEEecHHHhcCCCCCCCHHH
Confidence 799999998876 442 22333345555555544 688999999864 56777777654321111 111
Q ss_pred ----hhhhcccCcEEEEee
Q psy10300 1320 ----IPVMSENLDWISVMT 1334 (1490)
Q Consensus 1320 ----~~~l~~~vD~i~vmt 1334 (1490)
.+.|.+.+|+++|-.
T Consensus 241 ~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 241 GVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred HHHHHHHHHhhCCEEEecC
Confidence 134555689988843
No 80
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=71.90 E-value=16 Score=50.22 Aligned_cols=66 Identities=21% Similarity=0.347 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcC-cC-------CCCCcchh---------------h-hhcCHHHHHHHHHHHHHHHHHc
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGG-WN-------DSAGNKYS---------------R-LVNSQQARSKFIAHVVNFILEH 1255 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG-~~-------~s~~~~f~---------------~-~~~~~~~r~~fi~si~~~l~~~ 1255 (1490)
.+|.+.|+++|++|++|||=|== .. ......|. . -..++..|+-+++++.-++++|
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 56889999999999999976421 00 00000010 0 0235788899999999999999
Q ss_pred CCCeEEEeec
Q psy10300 1256 NFDGLDLDWE 1265 (1490)
Q Consensus 1256 g~DGIDIDwE 1265 (1490)
++||+-||.-
T Consensus 635 ~VDGFRfDl~ 644 (1111)
T TIGR02102 635 KVDGFRFDMM 644 (1111)
T ss_pred CCcEEEEecc
Confidence 9999999975
No 81
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=70.69 E-value=85 Score=38.00 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--cCcCCCC------C-c------------chhhhhcC---HHHHHHHHHHHHHHHHHc
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--GGWNDSA------G-N------------KYSRLVNS---QQARSKFIAHVVNFILEH 1255 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--GG~~~s~------~-~------------~f~~~~~~---~~~r~~fi~si~~~l~~~ 1255 (1490)
..+.+.+..+|++|-|+++-| .|..... + . ...+.++. .+-.+.|++.. ..+++-
T Consensus 78 ~~~~~l~d~vh~~Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~a~~a 156 (361)
T cd04747 78 AGWKKVVDEVHAAGGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-ADARRL 156 (361)
T ss_pred HHHHHHHHHHHhcCCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HHHHHc
Confidence 455666778899999999887 2221110 0 0 00111111 23445566544 455667
Q ss_pred CCCeEEEeecC---------CCCC-CCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCC
Q psy10300 1256 NFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSP 1309 (1490)
Q Consensus 1256 g~DGIDIDwE~---------P~~~-~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~ 1309 (1490)
|||||+|.--+ |... ..+..+++-+++..|. ..|+++|++.++ ++.|.+-+.+
T Consensus 157 GfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~-d~~v~vRis~ 220 (361)
T cd04747 157 GFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGP-DFPIILRFSQ 220 (361)
T ss_pred CCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEECc
Confidence 99999999776 5432 1222334445555544 588888888854 4677777765
No 82
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=70.37 E-value=2.5 Score=53.41 Aligned_cols=13 Identities=15% Similarity=0.281 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHH
Q psy10300 262 DFSTFIQELSSTL 274 (1490)
Q Consensus 262 ~f~~ll~eLr~~~ 274 (1490)
.|.+.++.|++.-
T Consensus 320 ey~d~~~~~~q~~ 332 (872)
T COG3889 320 EYDDIIRFLKQLN 332 (872)
T ss_pred HHHHHHHHHHhhh
Confidence 3444444444433
No 83
>PRK05402 glycogen branching enzyme; Provisional
Probab=70.22 E-value=21 Score=47.49 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc-CcCCCC--------C--------------cchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG-GWNDSA--------G--------------NKYSR---LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG-G~~~s~--------~--------------~~f~~---~~~~~~~r~~fi~si~~~l 1252 (1490)
.+.|.+.|.++|++|++|||=+= +..... + ..|.. -..+++.|+-+++++.-+|
T Consensus 314 ~~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~ 393 (726)
T PRK05402 314 PDDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWL 393 (726)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999998651 100000 0 00100 2347899999999999999
Q ss_pred HHcCCCeEEEee
Q psy10300 1253 LEHNFDGLDLDW 1264 (1490)
Q Consensus 1253 ~~~g~DGIDIDw 1264 (1490)
++|++||+-||-
T Consensus 394 ~e~~iDG~R~D~ 405 (726)
T PRK05402 394 EEFHIDGLRVDA 405 (726)
T ss_pred HHhCCcEEEECC
Confidence 999999999993
No 84
>PRK12313 glycogen branching enzyme; Provisional
Probab=69.71 E-value=23 Score=46.49 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcC-cCCCC--------------------C--cchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGG-WNDSA--------------------G--NKYSR---LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG-~~~s~--------------------~--~~f~~---~~~~~~~r~~fi~si~~~l 1252 (1490)
.+.+.+.|.++|++|+||+|=+=- ..... + ..|.. -..+++.|+-+++++.-+|
T Consensus 219 ~~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~ 298 (633)
T PRK12313 219 PEDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWL 298 (633)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 457889999999999999976521 00000 0 00100 1246899999999999999
Q ss_pred HHcCCCeEEEe
Q psy10300 1253 LEHNFDGLDLD 1263 (1490)
Q Consensus 1253 ~~~g~DGIDID 1263 (1490)
++|++||+-||
T Consensus 299 ~~~~iDG~R~D 309 (633)
T PRK12313 299 DEYHLDGLRVD 309 (633)
T ss_pred HHhCCcEEEEc
Confidence 99999999999
No 85
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=69.67 E-value=19 Score=48.27 Aligned_cols=66 Identities=26% Similarity=0.427 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEE-------cCcCCCC------Ccchhh----------------hhcCHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI-------GGWNDSA------GNKYSR----------------LVNSQQARSKFIAHVVN 1250 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi-------GG~~~s~------~~~f~~----------------~~~~~~~r~~fi~si~~ 1250 (1490)
.+|.+.|+++|++|++||+=| +|..... ...|.+ ...++..|+-+++++.-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~ 483 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVV 483 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999755 2221100 001111 12357888999999999
Q ss_pred HHHHcCCCeEEEeec
Q psy10300 1251 FILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1251 ~l~~~g~DGIDIDwE 1265 (1490)
|+++|++||+-||.-
T Consensus 484 W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 484 WAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHcCCCEEEEech
Confidence 999999999999986
No 86
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=69.51 E-value=2.5 Score=53.47 Aligned_cols=14 Identities=14% Similarity=0.161 Sum_probs=6.0
Q ss_pred HHHHHHHHHHhhcC
Q psy10300 265 TFIQELSSTLRRNN 278 (1490)
Q Consensus 265 ~ll~eLr~~~~~~~ 278 (1490)
..+.++.+.+++.+
T Consensus 319 ~ey~d~~~~~~q~~ 332 (872)
T COG3889 319 KEYDDIIRFLKQLN 332 (872)
T ss_pred HHHHHHHHHHHhhh
Confidence 33344444444443
No 87
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=68.91 E-value=19 Score=43.19 Aligned_cols=93 Identities=13% Similarity=0.215 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEeeC---------CCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe~---------p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~v 285 (1490)
..+.|++.+ ..+++.|||||+|+--. |....+. +-.+|+.++|-.|. +.|+++|+++.. ++.|.+-+
T Consensus 147 ~i~~~~~aA-~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~-D~yGGslenR~rf~~EiI~aIR~avG~-d~~v~vri 223 (338)
T cd04733 147 VIDRFAHAA-RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRT-DEYGGSLENRARLLLEIYDAIRAAVGP-GFPVGIKL 223 (338)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCC-ccCCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEE
Confidence 344666655 46788999999998664 6544332 22456666665554 677777777643 35666666
Q ss_pred cccccccccccCh-------hhhccc-ceeeeeec
Q psy10300 286 PGVIDRKTSLVDI-------SVVAPL-VDLILLKS 312 (1490)
Q Consensus 286 ~~~~~~~~~~yd~-------~~l~~~-vD~i~lmt 312 (1490)
.+.. ....+++. +.|.+. +|+|.|..
T Consensus 224 s~~~-~~~~g~~~eea~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 224 NSAD-FQRGGFTEEDALEVVEALEEAGVDLVELSG 257 (338)
T ss_pred cHHH-cCCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5422 12233432 344443 78887754
No 88
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=67.69 E-value=46 Score=40.02 Aligned_cols=132 Identities=15% Similarity=0.269 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc--CcCCCCC-cc-----hhhh----------hcC----HHHHHHHHHHHHHHHHHcCC
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG--GWNDSAG-NK-----YSRL----------VNS----QQARSKFIAHVVNFILEHNF 1257 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG--G~~~s~~-~~-----f~~~----------~~~----~~~r~~fi~si~~~l~~~g~ 1257 (1490)
..+.+.+..+|++|-|+++-|. |...... .. -+.+ ..+ .+-.+.|++... .+++-||
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~AA~-ra~~aGf 155 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFADAAR-RCQAGGL 155 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHH-HHHHcCC
Confidence 4566677788999999997773 3211100 00 0000 011 244556666554 4456899
Q ss_pred CeEEEee--cC-------CCCC-CCCCCCCCccch-hhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCC-------
Q psy10300 1258 DGLDLDW--EY-------PKCW-QVDCKQGPASDK-QGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYD------- 1319 (1490)
Q Consensus 1258 DGIDIDw--E~-------P~~~-~~~~~~~~~~d~-~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d------- 1319 (1490)
|||+|.- -| |... ..+..+++-+++ .....+|+++|++.+. .+.+.+-+.+.... ..+.+
T Consensus 156 DgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~-~~~v~iRl~~~~~~-~~G~~~~e~~~~ 233 (343)
T cd04734 156 DGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGP-DFIVGIRISGDEDT-EGGLSPDEALEI 233 (343)
T ss_pred CEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCC-CCeEEEEeehhhcc-CCCCCHHHHHHH
Confidence 9999998 33 3211 122234444455 4455688999998853 46677776654321 12222
Q ss_pred hhhhcc--cCcEEEEee
Q psy10300 1320 IPVMSE--NLDWISVMT 1334 (1490)
Q Consensus 1320 ~~~l~~--~vD~i~vmt 1334 (1490)
.+.|.+ .+|+|.|-.
T Consensus 234 ~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 234 AARLAAEGLIDYVNVSA 250 (343)
T ss_pred HHHHHhcCCCCEEEeCC
Confidence 234444 389999854
No 89
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.66 E-value=11 Score=45.81 Aligned_cols=98 Identities=21% Similarity=0.374 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEee--cCCCCCCCCC----------CCCCCch--------hhhHHHHHHHHHHHh
Q psy10300 844 SATARQRFIEHVVKFLLKYQFDGLDLDW--EYPTCWQVNC----------DAGPDSD--------KESFGLFVRELHQAF 903 (1490)
Q Consensus 844 ~~~~r~~fi~s~~~~l~~ygfDGvDiDw--E~P~~~~~~~----------~~~~~~d--------~~~~~~ll~eLr~~l 903 (1490)
-++.|+-..+-+++.+++|..|||.||- =||..++.+. ..++..+ +++..+|++++...+
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4566666678889999999999999992 2444333221 1122222 246789999999988
Q ss_pred CCCC--ceEEEEE-CC-ChhhHhhhcC-----hhh--hcccCceEEeeccc
Q psy10300 904 KPHG--LLLSAAV-SP-SKQVINAAYD-----VKA--LSESLDWISVMTYD 943 (1490)
Q Consensus 904 ~~~~--~~ls~a~-~~-~~~~~~~~~~-----~~~--l~~~vD~i~vmtYD 943 (1490)
++.+ ..++++. .+ ..... .|+ ... -..++|++.+|.|=
T Consensus 260 KavKp~v~~svsp~n~~~~~~f--~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 260 KAVKPNVKFSVSPFNPLGSATF--AYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred HhhCCCeEEEEccCCCCCccce--ehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 7644 4555554 21 11000 121 111 14578999999994
No 90
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=67.00 E-value=23 Score=48.73 Aligned_cols=66 Identities=20% Similarity=0.384 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeC--------CCCCCCcch---------------hhh-hcCHHHHHHHHHHHHHHHHHc
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGG--------WNDSLGGKY---------------SRL-VNSATARQRFIEHVVKFLLKY 862 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG--------~~~s~~~~f---------------~~~-~~~~~~r~~fi~s~~~~l~~y 862 (1490)
.+|.+.|.+||++|++|||=+== +.......| ..+ ..++..|+-+++++.-++++|
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey 634 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEF 634 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 46778899999999999985310 000000000 001 134677888999999999999
Q ss_pred CCCeEEEeec
Q psy10300 863 QFDGLDLDWE 872 (1490)
Q Consensus 863 gfDGvDiDwE 872 (1490)
++||+-||.=
T Consensus 635 ~VDGFRfDl~ 644 (1111)
T TIGR02102 635 KVDGFRFDMM 644 (1111)
T ss_pred CCcEEEEecc
Confidence 9999999965
No 91
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=66.32 E-value=28 Score=45.40 Aligned_cols=66 Identities=18% Similarity=0.375 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc-----CcC-----CCCCcch------------h----h-hhcCHHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG-----GWN-----DSAGNKY------------S----R-LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG-----G~~-----~s~~~~f------------~----~-~~~~~~~r~~fi~si~~~l 1252 (1490)
..|.+.|+++|++|++|||=+= +.. ......| + . -..++..|+-+++++.-++
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~ 308 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWV 308 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 5788999999999999997651 100 0000001 0 0 1236788999999999999
Q ss_pred HHcCCCeEEEeec
Q psy10300 1253 LEHNFDGLDLDWE 1265 (1490)
Q Consensus 1253 ~~~g~DGIDIDwE 1265 (1490)
++|++||+-||--
T Consensus 309 ~e~~iDGfR~D~~ 321 (605)
T TIGR02104 309 KEYNIDGFRFDLM 321 (605)
T ss_pred HHcCCCEEEEech
Confidence 9999999999965
No 92
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=66.06 E-value=1.1e+02 Score=36.91 Aligned_cols=133 Identities=17% Similarity=0.242 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHhcCCcEEEEEE--cCcCCCCC-----c--------chhhhhcC---HHHHHHHHHHHHHHHHHcCCCeE
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAI--GGWNDSAG-----N--------KYSRLVNS---QQARSKFIAHVVNFILEHNFDGL 1260 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~Kvllsi--GG~~~s~~-----~--------~f~~~~~~---~~~r~~fi~si~~~l~~~g~DGI 1260 (1490)
-..+.+.+..+|+.|.|+++-| +|...... . ...+.++. .+..+.|++... .+++-|||||
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL~h~G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~-~a~~aGfDgV 154 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQILHAGRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAA-LAREAGYDGV 154 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeeccCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-HHHHcCCCEE
Confidence 3456677778899999999877 23221100 0 00011111 234455665554 3455799999
Q ss_pred EEeecC---------CCC-CCCCCCCCCccchhhH-HHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCCh-------hh
Q psy10300 1261 DLDWEY---------PKC-WQVDCKQGPASDKQGF-ADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI-------PV 1322 (1490)
Q Consensus 1261 DIDwE~---------P~~-~~~~~~~~~~~d~~~~-~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~-------~~ 1322 (1490)
+|..-+ |.. ...+..+++-+++..| ...|+++|++++. ++.|.+-+.+... ...+++. +.
T Consensus 155 eih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~-d~~v~iRi~~~D~-~~~g~~~~e~~~i~~~ 232 (353)
T cd02930 155 EIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGE-DFIIIYRLSMLDL-VEGGSTWEEVVALAKA 232 (353)
T ss_pred EEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEeccccc-CCCCCCHHHHHHHHHH
Confidence 997631 321 1222223344444444 4688999999964 4666666654321 1122332 23
Q ss_pred hcc-cCcEEEEee
Q psy10300 1323 MSE-NLDWISVMT 1334 (1490)
Q Consensus 1323 l~~-~vD~i~vmt 1334 (1490)
|.+ -+|+|+|..
T Consensus 233 Le~~G~d~i~vs~ 245 (353)
T cd02930 233 LEAAGADILNTGI 245 (353)
T ss_pred HHHcCCCEEEeCC
Confidence 333 389999843
No 93
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=65.75 E-value=18 Score=40.92 Aligned_cols=91 Identities=22% Similarity=0.205 Sum_probs=60.0
Q ss_pred HHHHHHHHHcCCCeEEEee-cCCCCCCCCCCCCC------CchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhH----
Q psy10300 853 EHVVKFLLKYQFDGLDLDW-EYPTCWQVNCDAGP------DSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVI---- 921 (1490)
Q Consensus 853 ~s~~~~l~~ygfDGvDiDw-E~P~~~~~~~~~~~------~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~---- 921 (1490)
-+|+.-+.+.|||-|.||+ .+|..++.-..... -+-.+.+..||.--|++|. .-||+.+-....+.
T Consensus 199 vtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~~~~Al~sfL~yArE~l~---vpIS~DIYG~nGw~~t~~ 275 (400)
T COG1306 199 VTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMTKSEALQSFLHYAREELE---VPISADIYGQNGWSSTDM 275 (400)
T ss_pred HHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCChHHHHHHHHHHHHHhcc---cceEEEeecccCccCCcc
Confidence 3567777889999999996 47864431111111 1123457778888888875 46777764433222
Q ss_pred hhhcChhhhcccCceEEeeccccCC
Q psy10300 922 NAAYDVKALSESLDWISVMTYDYHG 946 (1490)
Q Consensus 922 ~~~~~~~~l~~~vD~i~vmtYD~~g 946 (1490)
..|-+++.|+.+||.|..|.|=-|-
T Consensus 276 ~~GQ~~e~ls~yVDvIsPMfYPSHy 300 (400)
T COG1306 276 ALGQFWEALSSYVDVISPMFYPSHY 300 (400)
T ss_pred hhhhhHHHHHhhhhhcccccccccc
Confidence 2345899999999999999996553
No 94
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=65.71 E-value=27 Score=41.77 Aligned_cols=92 Identities=18% Similarity=0.202 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEE
Q psy10300 215 ESRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLT 284 (1490)
Q Consensus 215 ~~r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~ 284 (1490)
...+.|++.+ ..+++-|||||+|+-- -|....+. +-.+|+.+.|-.|. +.|+++|++. ++.|.+-
T Consensus 139 ~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~Rt-D~yGGslenR~Rf~~eii~~ir~~~---~~~v~vR 213 (337)
T PRK13523 139 ETVLAFKQAA-VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRT-DEYGGSPENRYRFLREIIDAVKEVW---DGPLFVR 213 (337)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCcC-CCCCCCHHHHHHHHHHHHHHHHHhc---CCCeEEE
Confidence 3455677655 4567789999999966 35443332 33456677776555 5667777776 3455555
Q ss_pred ecccccccccccCh-------hhhccc-ceeeeeec
Q psy10300 285 SPGVIDRKTSLVDI-------SVVAPL-VDLILLKS 312 (1490)
Q Consensus 285 v~~~~~~~~~~yd~-------~~l~~~-vD~i~lmt 312 (1490)
+.+... ...++++ +.|.+. +|+|+|..
T Consensus 214 is~~d~-~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 214 ISASDY-HPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred eccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 554321 2234433 233332 79998744
No 95
>PLN02960 alpha-amylase
Probab=65.67 E-value=43 Score=44.49 Aligned_cols=65 Identities=17% Similarity=0.260 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc----Cc---------CCCCCcchh------------hh--hcCHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG----GW---------NDSAGNKYS------------RL--VNSQQARSKFIAHVVNF 1251 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG----G~---------~~s~~~~f~------------~~--~~~~~~r~~fi~si~~~ 1251 (1490)
...|...|.++|++|++|+|=+= +. .++..-.|. .+ ..+++.|+-+++++.-+
T Consensus 465 p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yW 544 (897)
T PLN02960 465 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWW 544 (897)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHH
Confidence 45788999999999999998761 10 000000111 11 35688999999999999
Q ss_pred HHHcCCCeEEEe
Q psy10300 1252 ILEHNFDGLDLD 1263 (1490)
Q Consensus 1252 l~~~g~DGIDID 1263 (1490)
|++|++||+-||
T Consensus 545 l~EyhIDGfR~D 556 (897)
T PLN02960 545 VTEYRVDGFQFH 556 (897)
T ss_pred HHHHCCCceeec
Confidence 999999999998
No 96
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=65.02 E-value=15 Score=41.28 Aligned_cols=108 Identities=11% Similarity=0.136 Sum_probs=56.2
Q ss_pred hhhcCCCceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccch-hhhHHHHHHHHH
Q psy10300 190 LKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESI-ANERSDFSTFIQ 268 (1490)
Q Consensus 190 LK~~np~lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~-~~d~~~f~~ll~ 268 (1490)
+.....+..++++|+|. ++ ..|++ ++..+++.|||||+|+--.|....+. +..++. ..+.+...++|+
T Consensus 48 ~~~~~~~~p~~~qi~g~------~~---~~~~~-aa~~~~~aG~d~ieln~g~p~~~~~~-~~~G~~l~~~~~~~~eii~ 116 (231)
T cd02801 48 LTRNPEERPLIVQLGGS------DP---ETLAE-AAKIVEELGADGIDLNMGCPSPKVTK-GGAGAALLKDPELVAEIVR 116 (231)
T ss_pred hccCccCCCEEEEEcCC------CH---HHHHH-HHHHHHhcCCCEEEEeCCCCHHHHhC-CCeeehhcCCHHHHHHHHH
Confidence 33445679999999873 22 22333 33445668999999997666432221 112222 234455667777
Q ss_pred HHHHHHhhcCcEEEEEeccccccc-ccccChhhhcc-cceeeeee
Q psy10300 269 ELSSTLRRNNYQLTLTSPGVIDRK-TSLVDISVVAP-LVDLILLK 311 (1490)
Q Consensus 269 eLr~~~~~~~~~ls~~v~~~~~~~-~~~yd~~~l~~-~vD~i~lm 311 (1490)
++|++.. ..+++-+....... +...-++.+.+ -+|+|+|.
T Consensus 117 ~v~~~~~---~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~ 158 (231)
T cd02801 117 AVREAVP---IPVTVKIRLGWDDEEETLELAKALEDAGASALTVH 158 (231)
T ss_pred HHHHhcC---CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEEC
Confidence 7777654 33444433222111 11111233333 27888773
No 97
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.80 E-value=31 Score=41.42 Aligned_cols=132 Identities=18% Similarity=0.321 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--cCcCCCCC---cc-----------------hhhhhcC---HHHHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--GGWNDSAG---NK-----------------YSRLVNS---QQARSKFIAHVVNFILE 1254 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--GG~~~s~~---~~-----------------f~~~~~~---~~~r~~fi~si~~~l~~ 1254 (1490)
..+.+....+|+.|-|+++-| +|...... .. ..+.+.. .+..+.|++.. ..+++
T Consensus 82 ~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA-~ra~~ 160 (338)
T cd04733 82 EAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA-RLAQE 160 (338)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH-HHHHH
Confidence 445666778888999998765 23221100 00 0011111 13445666544 45678
Q ss_pred cCCCeEEEeecC---------CCCC-CCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCCChhhhhccCCh---
Q psy10300 1255 HNFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI--- 1320 (1490)
Q Consensus 1255 ~g~DGIDIDwE~---------P~~~-~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~--- 1320 (1490)
.|||||+|.--+ |... ..+..+++-+++..|. ..|+++|++++. ++.|.+.+.+.. ....+++.
T Consensus 161 aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~-d~~v~vris~~~-~~~~g~~~eea 238 (338)
T cd04733 161 AGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGP-GFPVGIKLNSAD-FQRGGFTEEDA 238 (338)
T ss_pred cCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEEcHHH-cCCCCCCHHHH
Confidence 899999998765 5422 2233344545555554 588999999853 577777776421 11223332
Q ss_pred ----hhhccc-CcEEEEee
Q psy10300 1321 ----PVMSEN-LDWISVMT 1334 (1490)
Q Consensus 1321 ----~~l~~~-vD~i~vmt 1334 (1490)
+.|.+. +|+|.|..
T Consensus 239 ~~ia~~Le~~Gvd~iev~~ 257 (338)
T cd04733 239 LEVVEALEEAGVDLVELSG 257 (338)
T ss_pred HHHHHHHHHcCCCEEEecC
Confidence 333333 89998865
No 98
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=64.78 E-value=18 Score=46.23 Aligned_cols=66 Identities=20% Similarity=0.302 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeC----CCCCC----Ccchh--------hh--hcCH---HHHHHHHHHHHHHHHHcCCC
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGG----WNDSL----GGKYS--------RL--VNSA---TARQRFIEHVVKFLLKYQFD 865 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG----~~~s~----~~~f~--------~~--~~~~---~~r~~fi~s~~~~l~~ygfD 865 (1490)
.++.+.|.++|++|++|+|=+== ..+.. ...|. .. ..++ .-|+-+++++.-++++|++|
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iD 239 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFD 239 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCc
Confidence 46778899999999999986421 10000 00010 00 1233 77888999999999999999
Q ss_pred eEEEeec
Q psy10300 866 GLDLDWE 872 (1490)
Q Consensus 866 GvDiDwE 872 (1490)
|+-||-=
T Consensus 240 GfR~D~~ 246 (542)
T TIGR02402 240 GLRLDAV 246 (542)
T ss_pred EEEEeCH
Confidence 9999953
No 99
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=64.75 E-value=59 Score=39.01 Aligned_cols=130 Identities=19% Similarity=0.266 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--cCcCCCC-C------c-------chhhhhcC---HHHHHHHHHHHHHHHHHcCCCeE
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--GGWNDSA-G------N-------KYSRLVNS---QQARSKFIAHVVNFILEHNFDGL 1260 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--GG~~~s~-~------~-------~f~~~~~~---~~~r~~fi~si~~~l~~~g~DGI 1260 (1490)
..+.+....+|++|-|+++-| +|..... + . ...+.++. .+-.+.|++.. ..+++-|||||
T Consensus 81 ~~~r~l~d~vh~~G~~i~~QL~H~G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgV 159 (337)
T PRK13523 81 EGLHKLVTFIHDHGAKAAIQLAHAGRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVI 159 (337)
T ss_pred HHHHHHHHHHHhcCCEEEEEccCCCCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEE
Confidence 456667778899999999877 2321100 0 0 00011111 14445666544 45566799999
Q ss_pred EEeecC---------CCC-CCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCCChhhhhccCCh-------hh
Q psy10300 1261 DLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI-------PV 1322 (1490)
Q Consensus 1261 DIDwE~---------P~~-~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~-------~~ 1322 (1490)
+|.--+ |.. ...+..+++-+++..|. ..|+++|++. ++.|.+-+.+... ...+++. +.
T Consensus 160 eih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~---~~~v~vRis~~d~-~~~G~~~~e~~~i~~~ 235 (337)
T PRK13523 160 EIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVW---DGPLFVRISASDY-HPGGLTVQDYVQYAKW 235 (337)
T ss_pred EEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhc---CCCeEEEeccccc-CCCCCCHHHHHHHHHH
Confidence 998763 543 22333344555565555 5788888887 3456666655321 1123332 22
Q ss_pred hcc-cCcEEEEee
Q psy10300 1323 MSE-NLDWISVMT 1334 (1490)
Q Consensus 1323 l~~-~vD~i~vmt 1334 (1490)
|.+ -+|+|+|-.
T Consensus 236 l~~~gvD~i~vs~ 248 (337)
T PRK13523 236 MKEQGVDLIDVSS 248 (337)
T ss_pred HHHcCCCEEEeCC
Confidence 322 289999854
No 100
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.46 E-value=22 Score=42.90 Aligned_cols=97 Identities=12% Similarity=0.213 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhh---cCcEE
Q psy10300 215 ESRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDFS-TFIQELSSTLRR---NNYQL 281 (1490)
Q Consensus 215 ~~r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~---~~~~l 281 (1490)
.-.+.|++.+.. +++-|||||+|+-- -|....+. +-.+|+.+.|-+|. +.|+++|+++.. ..+.|
T Consensus 141 ~ii~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~-D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v 218 (353)
T cd04735 141 DIIDAFGEATRR-AIEAGFDGVEIHGANGYLIQQFFSPHSNRRT-DEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFIL 218 (353)
T ss_pred HHHHHHHHHHHH-HHHcCCCEEEEccccchHHHHhcCCccCCCC-cccCCcHHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence 344567766654 66789999999953 36444432 22456666666655 677889988862 35667
Q ss_pred EEEecccccccccccCh-------hhhccc-ceeeeeeccc
Q psy10300 282 TLTSPGVIDRKTSLVDI-------SVVAPL-VDLILLKSFN 314 (1490)
Q Consensus 282 s~~v~~~~~~~~~~yd~-------~~l~~~-vD~i~lmtyd 314 (1490)
.+-+.+... ...+.+. +.|.+. +|+|.|....
T Consensus 219 ~~R~s~~~~-~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 219 GYRFSPEEP-EEPGIRMEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred EEEECcccc-cCCCCCHHHHHHHHHHHHHcCCCEEEeccCc
Confidence 776665332 1222222 334333 7999986643
No 101
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=64.40 E-value=13 Score=43.58 Aligned_cols=105 Identities=10% Similarity=0.137 Sum_probs=68.6
Q ss_pred cEEEEeeEEecCCCcEeccCCCcchhhHHHHHHHHHHhcCCcEEEEEEc-CcCCC--CCcchhhhhc-CHHHHHHHHHHH
Q psy10300 1173 THVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIG-GWNDS--AGNKYSRLVN-SQQARSKFIAHV 1248 (1490)
Q Consensus 1173 ThIi~af~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~k~~g~KvllsiG-G~~~s--~~~~f~~~~~-~~~~r~~fi~si 1248 (1490)
+.++| |+.-.+.|.+..+.. ..|.++|.+||.|+=.|- -|... ..+.+..|+. +++-.=-|++.+
T Consensus 111 D~mVy-WgGSsGEGii~tPSa----------DVIDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~kl 179 (553)
T COG4724 111 DSMVY-WGGSSGEGIIPTPSA----------DVIDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKL 179 (553)
T ss_pred hheee-ecCcCCCccccCCch----------hhhhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHH
Confidence 33443 555555554443321 347789999999985552 11110 1245666664 444455689999
Q ss_pred HHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhc
Q psy10300 1249 VNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF 1296 (1490)
Q Consensus 1249 ~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l 1296 (1490)
++..+-|||||--|+=|-- +..+.+.+++..||..+++.-
T Consensus 180 v~vAkyYGfdGwFINqET~--------G~~~~~a~~M~~f~ly~ke~~ 219 (553)
T COG4724 180 VDVAKYYGFDGWFINQETT--------GDVKPLAEKMRQFMLYSKEYA 219 (553)
T ss_pred HHHHHhcCcceeEeccccc--------CCCcchHHHHHHHHHHHHhcc
Confidence 9999999999999988832 346778888888888887554
No 102
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=64.23 E-value=36 Score=41.19 Aligned_cols=69 Identities=16% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEeeC---------CCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe~---------p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v 285 (1490)
-.+.|++.+ ..+++-|||||+|+--. |....+.+. .+|+-+.|..| .+.|+.+|++..+ .+.|.+-+
T Consensus 142 ii~~f~~AA-~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDe-YGGslenR~Rf~~eii~air~~vG~-d~~v~vRi 218 (361)
T cd04747 142 VIAAFARAA-ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADG-YGGSLAARSRFAAEVVKAIRAAVGP-DFPIILRF 218 (361)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHcCC-CCeEEEEE
Confidence 344677655 45567799999999665 655444322 45666555443 3455555555532 36667666
Q ss_pred cc
Q psy10300 286 PG 287 (1490)
Q Consensus 286 ~~ 287 (1490)
.+
T Consensus 219 s~ 220 (361)
T cd04747 219 SQ 220 (361)
T ss_pred Cc
Confidence 64
No 103
>PRK12568 glycogen branching enzyme; Provisional
Probab=63.18 E-value=37 Score=44.57 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcC------------cCCC------C---C--cchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGG------------WNDS------A---G--NKYSR---LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG------------~~~s------~---~--~~f~~---~~~~~~~r~~fi~si~~~l 1252 (1490)
...|...|.++|++|++|+|=+=- +.+. . + ..|.. -..+++.|+-+++++.-+|
T Consensus 318 ~~dfk~lV~~~H~~Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl 397 (730)
T PRK12568 318 PDGFAQFVDACHRAGIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWI 397 (730)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHH
Confidence 357889999999999999986521 0000 0 0 01111 1357889999999999999
Q ss_pred HHcCCCeEEEe
Q psy10300 1253 LEHNFDGLDLD 1263 (1490)
Q Consensus 1253 ~~~g~DGIDID 1263 (1490)
++|++||+-+|
T Consensus 398 ~eyhIDG~R~D 408 (730)
T PRK12568 398 EHYHLDGLRVD 408 (730)
T ss_pred HHhCceEEEEc
Confidence 99999999999
No 104
>PLN03244 alpha-amylase; Provisional
Probab=62.99 E-value=54 Score=42.96 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcC----c---------CCCCCcchh------------h--hhcCHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGG----W---------NDSAGNKYS------------R--LVNSQQARSKFIAHVVNF 1251 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG----~---------~~s~~~~f~------------~--~~~~~~~r~~fi~si~~~ 1251 (1490)
...|...|.++|++|++|||=+-- . .++....|+ . -...++.|+-+++++.-+
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 356889999999999999986521 0 000000111 0 123578899999999999
Q ss_pred HHHcCCCeEEEe
Q psy10300 1252 ILEHNFDGLDLD 1263 (1490)
Q Consensus 1252 l~~~g~DGIDID 1263 (1490)
|++|++||+-+|
T Consensus 520 leEyhIDGFRfD 531 (872)
T PLN03244 520 ITEYQIDGFQFH 531 (872)
T ss_pred HHHhCcCcceee
Confidence 999999999998
No 105
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=62.17 E-value=41 Score=44.35 Aligned_cols=67 Identities=18% Similarity=0.290 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc----CcCCC----------CC-----------cchh-------h-hhcCHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG----GWNDS----------AG-----------NKYS-------R-LVNSQQARSKFI 1245 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG----G~~~s----------~~-----------~~f~-------~-~~~~~~~r~~fi 1245 (1490)
..+|.+.|+++|++|++|||=+= +.... .. ..|. . -..++..|+-++
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHH
Confidence 35688999999999999997652 00000 00 0000 0 123678888899
Q ss_pred HHHHHHHHHcCCCeEEEeec
Q psy10300 1246 AHVVNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1246 ~si~~~l~~~g~DGIDIDwE 1265 (1490)
+++.-++++||+||+-||.-
T Consensus 324 d~l~~W~~e~gIDGfR~D~a 343 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLA 343 (688)
T ss_pred HHHHHHHHHcCCcEEEEech
Confidence 99999999999999999975
No 106
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=60.66 E-value=32 Score=46.26 Aligned_cols=66 Identities=26% Similarity=0.466 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEE-------eCCCCC------CCcchh----------------hhhcCHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAI-------GGWNDS------LGGKYS----------------RLVNSATARQRFIEHVVK 857 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSi-------GG~~~s------~~~~f~----------------~~~~~~~~r~~fi~s~~~ 857 (1490)
.+|.+.|++||++|++|||=+ +|.... ....|. ....++.-|+-+++++.-
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~ 483 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVV 483 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 367778999999999999743 222110 000010 012357778889999999
Q ss_pred HHHHcCCCeEEEeec
Q psy10300 858 FLLKYQFDGLDLDWE 872 (1490)
Q Consensus 858 ~l~~ygfDGvDiDwE 872 (1490)
++++|++||+-||.=
T Consensus 484 W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 484 WAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHcCCCEEEEech
Confidence 999999999999976
No 107
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.57 E-value=21 Score=43.32 Aligned_cols=102 Identities=17% Similarity=0.218 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHHHHhcCCceeEEE--eeCCCCCCCCCcc--------ccchhh--------hHHHHHHHHHHHHHHH
Q psy10300 213 DRESRLNFISSVLEMFDMYKFDGLDLN--VKDPALNDEDDDD--------LESIAN--------ERSDFSTFIQELSSTL 274 (1490)
Q Consensus 213 ~~~~r~~fi~siv~~l~~~~fDGvdld--we~p~~~~~~~~~--------~~~~~~--------d~~~f~~ll~eLr~~~ 274 (1490)
-++-|+-..+-+++.++.|..|||.+| |=||...+.+..- .++... -+++-.+|+++|....
T Consensus 180 ~Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~V 259 (418)
T COG1649 180 IPEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTV 259 (418)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666666677889999999999998 4455544332110 111111 2468899999999999
Q ss_pred hhcCcEEEEEecc-c-ccccccccChhh-------hcccceeeeeeccc
Q psy10300 275 RRNNYQLTLTSPG-V-IDRKTSLVDISV-------VAPLVDLILLKSFN 314 (1490)
Q Consensus 275 ~~~~~~ls~~v~~-~-~~~~~~~yd~~~-------l~~~vD~i~lmtyd 314 (1490)
+....-+.+.|++ + .....-.||..- -..++|++..|.|-
T Consensus 260 KavKp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr 308 (418)
T COG1649 260 KAVKPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYR 308 (418)
T ss_pred HhhCCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhc
Confidence 9876444455444 3 111112343311 14688999999983
No 108
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=60.31 E-value=40 Score=36.33 Aligned_cols=10 Identities=30% Similarity=0.992 Sum_probs=4.3
Q ss_pred cCCCccceee
Q psy10300 624 PSDCNKYQYC 633 (1490)
Q Consensus 624 p~~C~~yy~C 633 (1490)
++.|.++-.|
T Consensus 53 ~~~C~~~~~C 62 (186)
T PF05283_consen 53 PETCEQHNSC 62 (186)
T ss_pred cccCCCCccc
Confidence 3444444444
No 109
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=60.03 E-value=61 Score=42.26 Aligned_cols=205 Identities=15% Similarity=0.205 Sum_probs=110.3
Q ss_pred CCccEEEE-eeEEecCCCcE---eccCCCcchhhHHHHHHH-HHHhcC-CcEEE--EEEcCcCCCC--------------
Q psy10300 1170 DLCTHVIY-GFAVLDTDQLV---IKPHDTWADLDNKFYEKV-TALKKK-GVKVT--LAIGGWNDSA-------------- 1227 (1490)
Q Consensus 1170 ~~~ThIi~-af~~i~~~~~~---~~~~~~~~~~~~~~~~~i-~~~k~~-g~Kvl--lsiGG~~~s~-------------- 1227 (1490)
-..+||.+ +|+..+++|.. .+++ .+..+...++..+ =+++.+ |+||. +-+-+|.-..
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpn-r~lPmraDlfnrvawql~tR~~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPN-RWIPMRQDLFNRVVWQLASRPDVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecC-CcccHHHhhhhHHHHHHHhhhCceEEEeeehhhccCCcccchhhhcccccCc
Confidence 45788887 88888888743 3333 3556667777776 466766 89987 2233331100
Q ss_pred ----Ccchhhhhc-CHHHHHHHHHHHHHHHHHc-CCCeEEEeecCCC---------------CCCCCCC--CC--Ccc--
Q psy10300 1228 ----GNKYSRLVN-SQQARSKFIAHVVNFILEH-NFDGLDLDWEYPK---------------CWQVDCK--QG--PAS-- 1280 (1490)
Q Consensus 1228 ----~~~f~~~~~-~~~~r~~fi~si~~~l~~~-g~DGIDIDwE~P~---------------~~~~~~~--~~--~~~-- 1280 (1490)
...+.++.- +++. ++.|++|..=|.+| .||||=|.=+--- .++.+.. .. .++
T Consensus 425 ~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 012223322 3344 45688888888887 7999988543100 0010000 00 000
Q ss_pred ------chhhHHHHHHHHHHhcCC-C--CcE------EEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCC
Q psy10300 1281 ------DKQGFADLIKELRAAFNP-H--DLL------LSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKT 1345 (1490)
Q Consensus 1281 ------d~~~~~~ll~eLr~~l~~-~--~~~------ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~ 1345 (1490)
....++.|-.+|+++.++ + .+. -...+.|....+ -+.++..+.+..||+-||+|-|--.
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarniya~~~l~p~~~~w-~aQ~l~~~~~~yD~~a~mamp~me~----- 577 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARNIFAMPILEPESEAW-FAQNLDDFLANYDWVAPMAMPLMEK----- 577 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhcccccccCChhHHHH-HHhHHHHHHhhcchhHHhhchhhhc-----
Confidence 123356788888888764 1 111 112222222111 2457888888999999999986532
Q ss_pred CCCCCCCCCCCCCCCCcCHHHHHHHHHHcCCCCCcEEEEeeccceeee
Q psy10300 1346 GHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFT 1393 (1490)
Q Consensus 1346 g~~spl~~~~~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~ 1393 (1490)
+. ...+.......++.+.+.-...+|+|+-|-. +.|+
T Consensus 578 ---~~------~~~~~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 578 ---VP------LSESNEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred ---cc------cccHHHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 00 0011112344455554444467999988764 3464
No 110
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=60.03 E-value=48 Score=43.74 Aligned_cols=64 Identities=16% Similarity=0.346 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcC-------------cCCCCCcchh------------hh--hcCHHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGG-------------WNDSAGNKYS------------RL--VNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG-------------~~~s~~~~f~------------~~--~~~~~~r~~fi~si~~~l 1252 (1490)
..+.+.|.++|++|++|||=+-- +....+..|. .. ..+++.|+-+++++.-++
T Consensus 300 ~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl 379 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWL 379 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHH
Confidence 56888999999999999976521 1000001111 01 235788899999999999
Q ss_pred HHcCCCeEEEe
Q psy10300 1253 LEHNFDGLDLD 1263 (1490)
Q Consensus 1253 ~~~g~DGIDID 1263 (1490)
++|++||+-||
T Consensus 380 ~ey~IDGfRfD 390 (758)
T PLN02447 380 EEYKFDGFRFD 390 (758)
T ss_pred HHhCccccccc
Confidence 99999999998
No 111
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=59.38 E-value=26 Score=41.99 Aligned_cols=68 Identities=12% Similarity=0.241 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEeeC---------CCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEEec
Q psy10300 217 RLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 217 r~~fi~siv~~l~~~~fDGvdldwe~---------p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
.+.|++.+ .-+++-|||||+|+--. |....+. +-.+|+.+.|-.|. +.|+++|++.... .|.+-+.
T Consensus 151 i~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~-D~yGGslenR~rf~~eii~air~~vg~d--~v~vRis 226 (338)
T cd02933 151 VADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRT-DEYGGSIENRARFLLEVVDAVAEAIGAD--RVGIRLS 226 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCC-CcCCCcHHHhhhHHHHHHHHHHHHhCCC--ceEEEEC
Confidence 34566544 45667899999999766 5444332 23456666664443 5567777776543 3666665
Q ss_pred cc
Q psy10300 287 GV 288 (1490)
Q Consensus 287 ~~ 288 (1490)
+.
T Consensus 227 ~~ 228 (338)
T cd02933 227 PF 228 (338)
T ss_pred cc
Confidence 43
No 112
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=59.17 E-value=46 Score=40.01 Aligned_cols=94 Identities=14% Similarity=0.211 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEEe--e-------CCCCCCCCCccccchhhhH-HHHHHHHHHHHHHHhhcCcEEEEE
Q psy10300 215 ESRLNFISSVLEMFDMYKFDGLDLNV--K-------DPALNDEDDDDLESIANER-SDFSTFIQELSSTLRRNNYQLTLT 284 (1490)
Q Consensus 215 ~~r~~fi~siv~~l~~~~fDGvdldw--e-------~p~~~~~~~~~~~~~~~d~-~~f~~ll~eLr~~~~~~~~~ls~~ 284 (1490)
...+.|++.+. .+++-|||||+|+- - .|....+. +-.+|+.+.| ....++|+.+|++... .+.+.+-
T Consensus 138 ~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~Rt-D~yGGslenR~r~~~eiv~~ir~~vg~-~~~v~iR 214 (343)
T cd04734 138 EIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRT-DEYGGSLENRMRFLLEVLAAVRAAVGP-DFIVGIR 214 (343)
T ss_pred HHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCC-CcCCCCHHHHhHHHHHHHHHHHHHcCC-CCeEEEE
Confidence 44567776665 55678999999997 3 34333322 2235555555 4455666777776642 3555555
Q ss_pred ecccccccccccCh-------hhhccc--ceeeeeec
Q psy10300 285 SPGVIDRKTSLVDI-------SVVAPL--VDLILLKS 312 (1490)
Q Consensus 285 v~~~~~~~~~~yd~-------~~l~~~--vD~i~lmt 312 (1490)
+.+... ...+.+. +.|.+. +|+|.|..
T Consensus 215 l~~~~~-~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 215 ISGDED-TEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred eehhhc-cCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 554332 2222322 344443 79998843
No 113
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=57.77 E-value=43 Score=40.90 Aligned_cols=70 Identities=16% Similarity=0.256 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEEe---eC-------CCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEE
Q psy10300 215 ESRLNFISSVLEMFDMYKFDGLDLNV---KD-------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTL 283 (1490)
Q Consensus 215 ~~r~~fi~siv~~l~~~~fDGvdldw---e~-------p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~ 283 (1490)
.-.+.|++.+ ..+++-|||||+|+- -| |....+.+. .+|+.+.|-+|+ +.|+++|++... ++.|.+
T Consensus 147 ~ii~~f~~AA-~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDe-yGGslenR~rf~~eii~~vr~~~g~-~f~v~v 223 (382)
T cd02931 147 TFVGKFGESA-VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDK-YGGSLENRLRFAIEIVEEIKARCGE-DFPVSL 223 (382)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCc-CCCCHHHHhHHHHHHHHHHHHhcCC-CceEEE
Confidence 3455676655 456668999999997 44 222223222 466666665443 556677766532 356666
Q ss_pred Eecc
Q psy10300 284 TSPG 287 (1490)
Q Consensus 284 ~v~~ 287 (1490)
-+.+
T Consensus 224 ri~~ 227 (382)
T cd02931 224 RYSV 227 (382)
T ss_pred EEec
Confidence 6554
No 114
>PRK05402 glycogen branching enzyme; Provisional
Probab=57.62 E-value=50 Score=44.07 Aligned_cols=64 Identities=19% Similarity=0.282 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-C---CC--------CC------C---C--cchh---hhhcCHHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-G---WN--------DS------L---G--GKYS---RLVNSATARQRFIEHVVKFLL 860 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-G---~~--------~s------~---~--~~f~---~~~~~~~~r~~fi~s~~~~l~ 860 (1490)
..+.+.|.++|++|++|||=+= + +. +. . + ..|. --..+++-|+-+++++.-+++
T Consensus 315 ~dfk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~~ 394 (726)
T PRK05402 315 DDFRYFVDACHQAGIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWLE 394 (726)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999998541 0 00 00 0 0 0010 023567888899999999999
Q ss_pred HcCCCeEEEe
Q psy10300 861 KYQFDGLDLD 870 (1490)
Q Consensus 861 ~ygfDGvDiD 870 (1490)
+|++||+-||
T Consensus 395 e~~iDG~R~D 404 (726)
T PRK05402 395 EFHIDGLRVD 404 (726)
T ss_pred HhCCcEEEEC
Confidence 9999999999
No 115
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=57.24 E-value=71 Score=41.74 Aligned_cols=66 Identities=20% Similarity=0.225 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc-CcCCCCC----------------------cchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG-GWNDSAG----------------------NKYSR---LVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG-G~~~s~~----------------------~~f~~---~~~~~~~r~~fi~si~~~l 1252 (1490)
...|.+.|.++|++|+||||=+- +...... ..|.. -..+++.|+-+++++.-+|
T Consensus 205 ~~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 205 PDDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 35688999999999999997642 1000000 00100 1246899999999999999
Q ss_pred HHcCCCeEEEee
Q psy10300 1253 LEHNFDGLDLDW 1264 (1490)
Q Consensus 1253 ~~~g~DGIDIDw 1264 (1490)
++|++||+-||-
T Consensus 285 ~ey~iDG~R~D~ 296 (613)
T TIGR01515 285 EFYHIDGLRVDA 296 (613)
T ss_pred HHhCCcEEEEcC
Confidence 999999999996
No 116
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=57.03 E-value=41 Score=40.91 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEeeC---------CCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe~---------p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v 285 (1490)
..+.|++.+ ..+++-|||||+|+--. |....+. +-.+|+.+.|-+| .+.|+++|++... .+.|.+-+
T Consensus 148 ii~~f~~AA-~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~Rt-D~yGGslenR~Rf~~eii~aIr~~vg~-~~~v~vRl 224 (370)
T cd02929 148 VRRWYVDAA-LRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRT-DEYGGSLENRARFWRETLEDTKDAVGD-DCAVATRF 224 (370)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhhCccccCCc-cccCCChHhhhHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 455677655 45677899999999765 5533332 2346666666444 3566677766643 45566665
Q ss_pred ccccccccc-ccCh-------hhhcccceeeeee
Q psy10300 286 PGVIDRKTS-LVDI-------SVVAPLVDLILLK 311 (1490)
Q Consensus 286 ~~~~~~~~~-~yd~-------~~l~~~vD~i~lm 311 (1490)
.+....... +.+. +.|.+.+|+++|.
T Consensus 225 s~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs 258 (370)
T cd02929 225 SVDELIGPGGIESEGEGVEFVEMLDELPDLWDVN 258 (370)
T ss_pred cHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEec
Confidence 543321111 1122 3455567888763
No 117
>PRK03705 glycogen debranching enzyme; Provisional
Probab=56.73 E-value=29 Score=45.36 Aligned_cols=66 Identities=21% Similarity=0.343 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcC-cCC---CCCc-------------------c---hh----hh-hcCHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGG-WND---SAGN-------------------K---YS----RL-VNSQQARSKFIAHV 1248 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG-~~~---s~~~-------------------~---f~----~~-~~~~~~r~~fi~si 1248 (1490)
.+|.+.|+++|++|+||||=|== ... ..+. . ++ .+ ..++..|+-+++++
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHH
Confidence 56889999999999999976521 000 0000 0 00 01 24688899999999
Q ss_pred HHHHHHcCCCeEEEeec
Q psy10300 1249 VNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1249 ~~~l~~~g~DGIDIDwE 1265 (1490)
.-++++||+||+-||--
T Consensus 322 ~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 322 RYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHhCCCEEEEEcH
Confidence 99999999999999975
No 118
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=56.70 E-value=28 Score=43.86 Aligned_cols=125 Identities=18% Similarity=0.229 Sum_probs=67.4
Q ss_pred cceeeeeeeEEcCCCCccccCCcchhhhhhhhHHHhhhhhcCCCceEEEEecc--------------chhhhhcCHHHHH
Q psy10300 153 CTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKS--------------NFVSITSDRESRL 218 (1490)
Q Consensus 153 CTHiiy~~a~i~~~~~~~~~~d~~~d~~~~~~~~~~~LK~~np~lKvllsvGg--------------~fs~~~~~~~~r~ 218 (1490)
.++ .|.|.... ++..+..|.-..+..+....-+.++++.||+|||+.|-=. ....-....+-++
T Consensus 127 s~~-~Yty~d~~-~D~~l~~Fs~~~~d~~~~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~ 204 (496)
T PF02055_consen 127 STR-PYTYDDVP-GDFNLSNFSIAREDKKYKIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQ 204 (496)
T ss_dssp SSS----ST-ST-THTTTTT---HHHHHTTHHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHH
T ss_pred cCC-cccccCCC-CCCccccCCccccchhhHHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHH
Confidence 344 36655432 2333444332222112234566677888999999998722 1111112346789
Q ss_pred HHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCcc----ccchhhhHHHHHHHHHH-HHHHHhhcCc
Q psy10300 219 NFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDD----LESIANERSDFSTFIQE-LSSTLRRNNY 279 (1490)
Q Consensus 219 ~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~----~~~~~~d~~~f~~ll~e-Lr~~~~~~~~ 279 (1490)
.+++=+++||++|.=-||+|+---+.+....... -....-.-+....||+. |+-+|++.++
T Consensus 205 ~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~ 270 (496)
T PF02055_consen 205 AYADYFVKFIQAYKKEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGL 270 (496)
T ss_dssp HHHHHHHHHHHHHHCTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987666555421000 00111123456788886 9999998765
No 119
>PRK12313 glycogen branching enzyme; Provisional
Probab=56.46 E-value=53 Score=43.12 Aligned_cols=64 Identities=22% Similarity=0.286 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeC-------C-----CCC------C---C--cchh---hhhcCHHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGG-------W-----NDS------L---G--GKYS---RLVNSATARQRFIEHVVKFLL 860 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG-------~-----~~s------~---~--~~f~---~~~~~~~~r~~fi~s~~~~l~ 860 (1490)
..+.+.|.++|++|++|||=+== + .++ . + ..|. --..+++.|+-+++++.-+++
T Consensus 220 ~d~k~lv~~~H~~Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~ 299 (633)
T PRK12313 220 EDFMYLVDALHQNGIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLD 299 (633)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHH
Confidence 46778899999999999985421 0 000 0 0 0010 012467888999999999999
Q ss_pred HcCCCeEEEe
Q psy10300 861 KYQFDGLDLD 870 (1490)
Q Consensus 861 ~ygfDGvDiD 870 (1490)
+|++||+-||
T Consensus 300 ~~~iDG~R~D 309 (633)
T PRK12313 300 EYHLDGLRVD 309 (633)
T ss_pred HhCCcEEEEc
Confidence 9999999999
No 120
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.41 E-value=54 Score=39.62 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v 285 (1490)
..+.|++.+. -+++-|||||+|+.- -|....+. +-.+|+.+.|-.| .+.|+++|+++.. .+.|.+-+
T Consensus 135 i~~~f~~aA~-~a~~aGfDgVeih~ahGyLl~qFlsp~~N~Rt-D~yGGslenR~r~~~eiv~aIR~~vG~-d~~v~iRi 211 (353)
T cd02930 135 TIEDFARCAA-LAREAGYDGVEIMGSEGYLINQFLAPRTNKRT-DEWGGSFENRMRFPVEIVRAVRAAVGE-DFIIIYRL 211 (353)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCccCCCc-CccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEe
Confidence 4456666554 456689999999863 24322222 2235555555443 4567777777744 34455544
Q ss_pred cccccccccccCh-------hhhccc-ceeeeee
Q psy10300 286 PGVIDRKTSLVDI-------SVVAPL-VDLILLK 311 (1490)
Q Consensus 286 ~~~~~~~~~~yd~-------~~l~~~-vD~i~lm 311 (1490)
.+... ...+++. +.|.++ +|+|+|.
T Consensus 212 ~~~D~-~~~g~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 212 SMLDL-VEGGSTWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred ccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 43221 1223333 334443 7999874
No 121
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=55.52 E-value=99 Score=37.08 Aligned_cols=92 Identities=21% Similarity=0.371 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEeecC---------CCC-CCCCCCCCCccchhhH-HHHHHHHHHhcCCCCcEEEEEeC
Q psy10300 1240 ARSKFIAHVVNFILEHNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGF-ADLIKELRAAFNPHDLLLSAAVS 1308 (1490)
Q Consensus 1240 ~r~~fi~si~~~l~~~g~DGIDIDwE~---------P~~-~~~~~~~~~~~d~~~~-~~ll~eLr~~l~~~~~~ls~av~ 1308 (1490)
-.+.|++..... ++-|||||+|.--+ |.. ...+..+++-.++..| ...|+++|+++++ ++.|.+.+.
T Consensus 152 ii~~~~~aA~~a-~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~-d~~v~vri~ 229 (336)
T cd02932 152 VVDAFVAAARRA-VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPE-DKPLFVRIS 229 (336)
T ss_pred HHHHHHHHHHHH-HHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEEc
Confidence 445566544444 55799999998632 321 1222223344444444 4688999999854 467777776
Q ss_pred CChhhhhccCCh-------hhhcc-cCcEEEEee
Q psy10300 1309 PSKAVIDNAYDI-------PVMSE-NLDWISVMT 1334 (1490)
Q Consensus 1309 ~~~~~~~~~~d~-------~~l~~-~vD~i~vmt 1334 (1490)
+... ...+++. +.|.+ -+|||.|..
T Consensus 230 ~~~~-~~~g~~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 230 ATDW-VEGGWDLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred cccc-CCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 5321 1122322 23333 379998853
No 122
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=55.42 E-value=49 Score=39.96 Aligned_cols=136 Identities=19% Similarity=0.360 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc--CcCCCC-----------Cc--------chhhhhcC---HHHHHHHHHHHHHHHHHc
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG--GWNDSA-----------GN--------KYSRLVNS---QQARSKFIAHVVNFILEH 1255 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG--G~~~s~-----------~~--------~f~~~~~~---~~~r~~fi~si~~~l~~~ 1255 (1490)
..+.+.+..+|++|-|+++-|. |..... +. ...+.++. .+-.+.|++.... +++-
T Consensus 78 ~~~~~l~~~vh~~G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~-a~~a 156 (353)
T cd04735 78 PGLRKLAQAIKSKGAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRR-AIEA 156 (353)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHH-HHHc
Confidence 4566677788999999987762 221110 00 00111111 2444566665544 5568
Q ss_pred CCCeEEEeecC---------CCCCC-CCCCCCCccchhhHH-HHHHHHHHhcCC---CCcEEEEEeCCChhhhhccCC--
Q psy10300 1256 NFDGLDLDWEY---------PKCWQ-VDCKQGPASDKQGFA-DLIKELRAAFNP---HDLLLSAAVSPSKAVIDNAYD-- 1319 (1490)
Q Consensus 1256 g~DGIDIDwE~---------P~~~~-~~~~~~~~~d~~~~~-~ll~eLr~~l~~---~~~~ls~av~~~~~~~~~~~d-- 1319 (1490)
|||||+|.--+ |.... .+-.+++.+++..|. ..|+++|++++. .++.|.+.+.+.... ..+.+
T Consensus 157 GfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~-~~g~~~e 235 (353)
T cd04735 157 GFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE-EPGIRME 235 (353)
T ss_pred CCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc-CCCCCHH
Confidence 99999998643 53222 233344555665555 688999999972 467788877764321 12222
Q ss_pred ----h-hhhcc-cCcEEEEeeccC
Q psy10300 1320 ----I-PVMSE-NLDWISVMTYDY 1337 (1490)
Q Consensus 1320 ----~-~~l~~-~vD~i~vmtYD~ 1337 (1490)
+ +.|.+ -+|+|.|....+
T Consensus 236 e~~~i~~~L~~~GvD~I~Vs~g~~ 259 (353)
T cd04735 236 DTLALVDKLADKGLDYLHISLWDF 259 (353)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcc
Confidence 1 23333 389999976543
No 123
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=55.30 E-value=58 Score=42.48 Aligned_cols=66 Identities=18% Similarity=0.419 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-----CC-C----CCCCcch---------h-------h-hhcCHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-----GW-N----DSLGGKY---------S-------R-LVNSATARQRFIEHVVKFL 859 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-----G~-~----~s~~~~f---------~-------~-~~~~~~~r~~fi~s~~~~l 859 (1490)
.++.+.|.++|++|++|||=+= +. . ......| . . -..++.-|+-+++++.-++
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~ 308 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWV 308 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 4677889999999999998541 10 0 0000000 0 0 1236778888999999999
Q ss_pred HHcCCCeEEEeec
Q psy10300 860 LKYQFDGLDLDWE 872 (1490)
Q Consensus 860 ~~ygfDGvDiDwE 872 (1490)
++||+||+-||-=
T Consensus 309 ~e~~iDGfR~D~~ 321 (605)
T TIGR02104 309 KEYNIDGFRFDLM 321 (605)
T ss_pred HHcCCCEEEEech
Confidence 9999999999955
No 124
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=55.11 E-value=90 Score=36.64 Aligned_cols=88 Identities=19% Similarity=0.349 Sum_probs=54.5
Q ss_pred HHHHHHHHHhc-CCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCc
Q psy10300 1201 KFYEKVTALKK-KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA 1279 (1490)
Q Consensus 1201 ~~~~~i~~~k~-~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~ 1279 (1490)
.+.+.++.++. .+.+++++|+|.. .+.|++ ++..+++.|+|+|+|++--|...+.+ ...-
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g--~~~~ 136 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGG--MAFG 136 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCc--cccc
Confidence 34455555544 4789999998732 233433 45566778999999999877632110 0012
Q ss_pred cchhhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q psy10300 1280 SDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310 (1490)
Q Consensus 1280 ~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~ 1310 (1490)
.+.+.+..+++++|+.. ++-|++-+.+.
T Consensus 137 ~~~~~~~eiv~~vr~~~---~~Pv~vKl~~~ 164 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT---DVPVIVKLTPN 164 (296)
T ss_pred CCHHHHHHHHHHHHhcc---CCCEEEEeCCC
Confidence 34466677888888876 35566766654
No 125
>PLN03244 alpha-amylase; Provisional
Probab=54.97 E-value=90 Score=41.01 Aligned_cols=64 Identities=19% Similarity=0.234 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeC-------------CCCCCCcchh--------------hhhcCHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGG-------------WNDSLGGKYS--------------RLVNSATARQRFIEHVVKFL 859 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG-------------~~~s~~~~f~--------------~~~~~~~~r~~fi~s~~~~l 859 (1490)
.++...|.++|++|++|||=+-- +.++....|. --...++-|+-+++++.-+|
T Consensus 441 eDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yWl 520 (872)
T PLN03244 441 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWWI 520 (872)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 35677899999999999986421 0000000111 01235678888899999999
Q ss_pred HHcCCCeEEEe
Q psy10300 860 LKYQFDGLDLD 870 (1490)
Q Consensus 860 ~~ygfDGvDiD 870 (1490)
++|++||+-||
T Consensus 521 eEyhIDGFRfD 531 (872)
T PLN03244 521 TEYQIDGFQFH 531 (872)
T ss_pred HHhCcCcceee
Confidence 99999999999
No 126
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=54.52 E-value=93 Score=41.17 Aligned_cols=64 Identities=17% Similarity=0.360 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe----------C---CCCCCCcchh-----------h-h--hcCHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG----------G---WNDSLGGKYS-----------R-L--VNSATARQRFIEHVVKFL 859 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG----------G---~~~s~~~~f~-----------~-~--~~~~~~r~~fi~s~~~~l 859 (1490)
.++.+.|.++|++|++|||=+- | +.+..+..|. . . ..+++-|+-+++++.-++
T Consensus 300 ~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~Wl 379 (758)
T PLN02447 300 EDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWWL 379 (758)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHHH
Confidence 4577789999999999998542 1 1110000010 0 1 135677888899999999
Q ss_pred HHcCCCeEEEe
Q psy10300 860 LKYQFDGLDLD 870 (1490)
Q Consensus 860 ~~ygfDGvDiD 870 (1490)
++|++||+-||
T Consensus 380 ~ey~IDGfRfD 390 (758)
T PLN02447 380 EEYKFDGFRFD 390 (758)
T ss_pred HHhCccccccc
Confidence 99999999999
No 127
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=54.50 E-value=20 Score=45.46 Aligned_cols=91 Identities=20% Similarity=0.280 Sum_probs=52.0
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCc-cchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhh
Q psy10300 1235 VNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA-SDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAV 1313 (1490)
Q Consensus 1235 ~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~-~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~ 1313 (1490)
..++.-|+-+++++.+.++..||||+.||=--......+.++... .-...|..||+++++++..+. ++.=+|
T Consensus 237 P~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~k~-lv~N~V------ 309 (559)
T PF13199_consen 237 PGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPDKY-LVFNAV------ 309 (559)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTTSE-EEEB-G------
T ss_pred CCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCCCc-eeeecc------
Confidence 357889999999999999999999999985421100011112222 447789999999999995443 222222
Q ss_pred hhccCChhhhcc--cCcEEEEee
Q psy10300 1314 IDNAYDIPVMSE--NLDWISVMT 1334 (1490)
Q Consensus 1314 ~~~~~d~~~l~~--~vD~i~vmt 1334 (1490)
.++....++. -+||+..--
T Consensus 310 --~~~g~~~~a~~~~~d~lY~Ev 330 (559)
T PF13199_consen 310 --SGYGIEQIAKTSKVDFLYNEV 330 (559)
T ss_dssp --GGTTHHHHTT-S--SSEEEE-
T ss_pred --Cccchhhhhcccccceeeeec
Confidence 2344445544 577775533
No 128
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=54.07 E-value=91 Score=36.71 Aligned_cols=87 Identities=15% Similarity=0.207 Sum_probs=54.3
Q ss_pred HHHHHHHHHh-CCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCCCCC
Q psy10300 809 FYERVVTLKK-KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCDAGPD 886 (1490)
Q Consensus 809 ~~~~i~~~k~-~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~yg-fDGvDiDwE~P~~~~~~~~~~~~ 886 (1490)
+.+.+...++ .++.+++||+|.+ .+.|++.+ ..++++| +|||+|+.-.|.....+ ....
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~----------------~~~~~~~a-~~~~~aG~~D~iElN~~cP~~~~gg--~~~~ 139 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGST----------------EEEYAEVA-EKLSKAPNVDAIELNISCPNVKHGG--MAFG 139 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCC----------------HHHHHHHH-HHHhccCCcCEEEEECCCCCCCCCc--cccc
Confidence 4555555443 3788999999842 23455443 4467888 99999999877531100 0112
Q ss_pred chhhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 887 SDKESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 887 ~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
.+.+.+..+++++|++. .+-|++-+.+.
T Consensus 140 ~~~~~~~eiv~~vr~~~---~~pv~vKl~~~ 167 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV---KVPVIVKLTPN 167 (301)
T ss_pred cCHHHHHHHHHHHHHhc---CCCEEEEcCCC
Confidence 35567778888888876 35566655543
No 129
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=53.95 E-value=78 Score=37.14 Aligned_cols=88 Identities=20% Similarity=0.309 Sum_probs=55.0
Q ss_pred HHHHHHHHHHh-CCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCC
Q psy10300 808 RFYERVVTLKK-KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 886 (1490)
Q Consensus 808 ~~~~~i~~~k~-~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~ 886 (1490)
.+.+.+..+++ .+.+++++|+|.. .+.|++ ++..++++|+|+|+|++-.|...+.+. ...
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~----------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~--~~~ 136 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGST----------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGM--AFG 136 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCC----------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcc--ccc
Confidence 44556666554 4789999999832 233554 344567789999999998876321100 011
Q ss_pred chhhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 887 SDKESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 887 ~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
.+...+..+++++|++. ++-|++-+.+.
T Consensus 137 ~~~~~~~eiv~~vr~~~---~~Pv~vKl~~~ 164 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT---DVPVIVKLTPN 164 (296)
T ss_pred CCHHHHHHHHHHHHhcc---CCCEEEEeCCC
Confidence 34456677888888876 34555555553
No 130
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=53.87 E-value=54 Score=40.05 Aligned_cols=107 Identities=21% Similarity=0.267 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--c-CcCCCC-----------Cc--------chhhhhcCH----HHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--G-GWNDSA-----------GN--------KYSRLVNSQ----QARSKFIAHVVNFIL 1253 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--G-G~~~s~-----------~~--------~f~~~~~~~----~~r~~fi~si~~~l~ 1253 (1490)
..+.+.....|++|-|+++-| + |..... +. ...+.+ +. +-.+.|++.. ..++
T Consensus 83 ~~~k~l~davh~~G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~m-t~~eI~~ii~~f~~AA-~ra~ 160 (382)
T cd02931 83 RTAKEMTERVHAYGTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCREL-TTEEVETFVGKFGESA-VIAK 160 (382)
T ss_pred HHHHHHHHHHHHcCCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcC-CHHHHHHHHHHHHHHH-HHHH
Confidence 456777788899999999887 2 422110 00 000111 22 3445566644 4555
Q ss_pred HcCCCeEEEee---cCC-------C-CCCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCC
Q psy10300 1254 EHNFDGLDLDW---EYP-------K-CWQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSP 1309 (1490)
Q Consensus 1254 ~~g~DGIDIDw---E~P-------~-~~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~ 1309 (1490)
+-|||||+|.- -|. . ....+-.+++.+++..|+ ..|+++|++.+ .++.|.+-+.+
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g-~~f~v~vri~~ 227 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCG-EDFPVSLRYSV 227 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcC-CCceEEEEEec
Confidence 67999999998 442 1 112232344445555554 58899998885 34677777664
No 131
>PLN02960 alpha-amylase
Probab=53.32 E-value=99 Score=41.31 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe----------C---CCCCC-----------Ccchhh---hhcCHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG----------G---WNDSL-----------GGKYSR---LVNSATARQRFIEHVVKFL 859 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG----------G---~~~s~-----------~~~f~~---~~~~~~~r~~fi~s~~~~l 859 (1490)
.++...|.++|++|++|||=+= | +.++. ...|.. -..+++-|+-+++++.-+|
T Consensus 466 ~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yWl 545 (897)
T PLN02960 466 DDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWWV 545 (897)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 4677789999999999998761 1 11100 000111 1356788888999999999
Q ss_pred HHcCCCeEEEe
Q psy10300 860 LKYQFDGLDLD 870 (1490)
Q Consensus 860 ~~ygfDGvDiD 870 (1490)
++|++||+-||
T Consensus 546 ~EyhIDGfR~D 556 (897)
T PLN02960 546 TEYRVDGFQFH 556 (897)
T ss_pred HHHCCCceeec
Confidence 99999999998
No 132
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=52.95 E-value=69 Score=38.82 Aligned_cols=95 Identities=8% Similarity=0.083 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhcCCceeEEEe---------eCCCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEE
Q psy10300 215 ESRLNFISSVLEMFDMYKFDGLDLNV---------KDPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLT 284 (1490)
Q Consensus 215 ~~r~~fi~siv~~l~~~~fDGvdldw---------e~p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~ 284 (1490)
.-.+.|++.+ ...++-|||||+|+- --|....+. +-.+|+.++|-+|. +.|+++|++.... . |.+-
T Consensus 156 ~ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~Rt-DeYGGslENR~Rf~~Eiv~aVr~~vg~~-~-igvR 231 (362)
T PRK10605 156 GIVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRT-DQYGGSVENRARLVLEVVDAGIAEWGAD-R-IGIR 231 (362)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCC-CcCCCcHHHHHHHHHHHHHHHHHHcCCC-e-EEEE
Confidence 3345666655 566779999999972 224433332 33567777776554 4556677776543 3 6666
Q ss_pred ecccc--cccccccCh--------hhhccc-ceeeeeecc
Q psy10300 285 SPGVI--DRKTSLVDI--------SVVAPL-VDLILLKSF 313 (1490)
Q Consensus 285 v~~~~--~~~~~~yd~--------~~l~~~-vD~i~lmty 313 (1490)
+.+.. +....+++. +.|.+. +|||+|..-
T Consensus 232 is~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 232 ISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred ECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 65532 112334443 334333 799988653
No 133
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=52.61 E-value=21 Score=45.75 Aligned_cols=80 Identities=23% Similarity=0.232 Sum_probs=38.2
Q ss_pred hHHHhhhhhcCCCceEEEE-e------ccchhhhhcCHHHHHHHHHHHHHHH-HhcCCceeEEEeeCCCCCCCCCccccc
Q psy10300 184 YKSFLGLKEANPELKVYLA-V------KSNFVSITSDRESRLNFISSVLEMF-DMYKFDGLDLNVKDPALNDEDDDDLES 255 (1490)
Q Consensus 184 ~~~~~~LK~~np~lKvlls-v------Gg~fs~~~~~~~~r~~fi~siv~~l-~~~~fDGvdldwe~p~~~~~~~~~~~~ 255 (1490)
+.-+.+.|++||+||+..- = |..+..-..++.. -+.-+++|| -.+..-|++|||--+-
T Consensus 115 ~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g~~~~~~~~~~---~a~Y~~~wl~ga~~~~gl~idYvg~~----------- 180 (669)
T PF02057_consen 115 WWLMAEAKKRNPNIKLYGLPWGFPGWVGNGWNWPYDNPQL---TAYYVVSWLLGAKKTHGLDIDYVGIW----------- 180 (669)
T ss_dssp HHHHHHHHHH-TT-EEEEEES-B-GGGGTTSS-TTSSHHH---HHHHHHHHHHHHHHHH-----EE-S------------
T ss_pred hhhHHHHHhhCCCCeEEEeccCCCccccCCCCCcccchhh---hhHHHHHHHHHHHHHhCCCceEechh-----------
Confidence 4578889999999999733 2 2222111112211 122345655 2234457789888442
Q ss_pred hhhhHHHHHHHHHHHHHHHhhcCc
Q psy10300 256 IANERSDFSTFIQELSSTLRRNNY 279 (1490)
Q Consensus 256 ~~~d~~~f~~ll~eLr~~~~~~~~ 279 (1490)
++|..=...++.||.+|+.++|
T Consensus 181 --NEr~~~~~~ik~lr~~l~~~gy 202 (669)
T PF02057_consen 181 --NERGFDVNYIKWLRKALNSNGY 202 (669)
T ss_dssp --TTS---HHHHHHHHHHHHHTT-
T ss_pred --hccCCChhHHHHHHHHHhhccc
Confidence 2232234678999999999885
No 134
>PRK14705 glycogen branching enzyme; Provisional
Probab=52.09 E-value=86 Score=43.81 Aligned_cols=65 Identities=22% Similarity=0.383 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc-------CcC-----CC------C-----Ccchhh---hhcCHHHHHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG-------GWN-----DS------A-----GNKYSR---LVNSQQARSKFIAHVVNFIL 1253 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG-------G~~-----~s------~-----~~~f~~---~~~~~~~r~~fi~si~~~l~ 1253 (1490)
..|...|.++|++|++|||=+= +|. +. + ...|.. -..+++.|+-+++++.-+++
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ 894 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLD 894 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 4688899999999999997641 110 00 0 000100 13568899999999999999
Q ss_pred HcCCCeEEEee
Q psy10300 1254 EHNFDGLDLDW 1264 (1490)
Q Consensus 1254 ~~g~DGIDIDw 1264 (1490)
+|++||+-+|-
T Consensus 895 eyhiDGfR~Da 905 (1224)
T PRK14705 895 EFHIDGLRVDA 905 (1224)
T ss_pred HhCCCcEEEee
Confidence 99999999996
No 135
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=50.87 E-value=2.3e+02 Score=34.40 Aligned_cols=94 Identities=14% Similarity=0.230 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCeEEEeecC---------CCC-CCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEe
Q psy10300 1239 QARSKFIAHVVNFILEHNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAV 1307 (1490)
Q Consensus 1239 ~~r~~fi~si~~~l~~~g~DGIDIDwE~---------P~~-~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av 1307 (1490)
+-.+.|++.. ...++-|||||+|.--+ |.. ...|-.+++-+++..|. ..|+++|++.... . |.+-+
T Consensus 156 ~ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~-~-igvRi 232 (362)
T PRK10605 156 GIVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGAD-R-IGIRI 232 (362)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCC-e-EEEEE
Confidence 3445566544 45566899999997542 221 12233345556666665 4888899998754 3 77777
Q ss_pred CCChh--hhhccCCh--------hhhcc-cCcEEEEeec
Q psy10300 1308 SPSKA--VIDNAYDI--------PVMSE-NLDWISVMTY 1335 (1490)
Q Consensus 1308 ~~~~~--~~~~~~d~--------~~l~~-~vD~i~vmtY 1335 (1490)
++... ....+++. +.|.+ -+|+|+|..-
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 66421 11223433 23333 2799999753
No 136
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=50.50 E-value=58 Score=39.09 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEeecC---------CCC-CCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCC
Q psy10300 1241 RSKFIAHVVNFILEHNFDGLDLDWEY---------PKC-WQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSP 1309 (1490)
Q Consensus 1241 r~~fi~si~~~l~~~g~DGIDIDwE~---------P~~-~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~ 1309 (1490)
.+.|++.. ..+++-|||||+|..-+ |.. ...+..+++-+++..|. ..|+++|++.+.. .|.+-+.+
T Consensus 151 i~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d--~v~vRis~ 227 (338)
T cd02933 151 VADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGAD--RVGIRLSP 227 (338)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCC--ceEEEECc
Confidence 34555533 45566799999999876 532 23334444555555554 5889999988654 36777765
Q ss_pred C
Q psy10300 1310 S 1310 (1490)
Q Consensus 1310 ~ 1310 (1490)
.
T Consensus 228 ~ 228 (338)
T cd02933 228 F 228 (338)
T ss_pred c
Confidence 4
No 137
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=50.18 E-value=29 Score=44.09 Aligned_cols=91 Identities=14% Similarity=0.265 Sum_probs=52.3
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCC-chhhhHHHHHHHHHHHhCCCCceEEEEECCChhhH
Q psy10300 843 NSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD-SDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVI 921 (1490)
Q Consensus 843 ~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~-~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~ 921 (1490)
.++..|+-.++++.+.++..||||+.||==-.-..-.+.++... .-...|..||++++++++. +.|++- +.
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~~~~~--k~lv~N--~V---- 309 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKEALPD--KYLVFN--AV---- 309 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHHHSTT--SEEEEB---G----
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHHhCCC--Cceeee--cc----
Confidence 57889999999999999999999999993210000011122222 4467899999999999953 344443 21
Q ss_pred hhhcChhhhcc--cCceEEeecc
Q psy10300 922 NAAYDVKALSE--SLDWISVMTY 942 (1490)
Q Consensus 922 ~~~~~~~~l~~--~vD~i~vmtY 942 (1490)
.++....++. .+||+..--.
T Consensus 310 -~~~g~~~~a~~~~~d~lY~EvW 331 (559)
T PF13199_consen 310 -SGYGIEQIAKTSKVDFLYNEVW 331 (559)
T ss_dssp -GGTTHHHHTT-S--SSEEEE--
T ss_pred -Cccchhhhhcccccceeeeecc
Confidence 2344555544 6787766554
No 138
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=50.01 E-value=26 Score=42.05 Aligned_cols=104 Identities=18% Similarity=0.260 Sum_probs=54.5
Q ss_pred HHHHHHhcCCcEEEEEEcC----cCCCCCcchh----hhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----C
Q psy10300 1204 EKVTALKKKGVKVTLAIGG----WNDSAGNKYS----RLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC-----W 1270 (1490)
Q Consensus 1204 ~~i~~~k~~g~KvllsiGG----~~~s~~~~f~----~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~-----~ 1270 (1490)
-.++++|++|+..++++-. |.-..+..+. ..--.++..+.|++-|++.++.+.=.||.|++=-|.. |
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~W 187 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWNW 187 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-G
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCCC
Confidence 3578889999999988742 1000000000 0111346788899999998888877899998754432 1
Q ss_pred CCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEe
Q psy10300 1271 QVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAV 1307 (1490)
Q Consensus 1271 ~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av 1307 (1490)
.....-+..-+.+....||++|+.+|.++++...+.+
T Consensus 188 ~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~~ 224 (384)
T PF14587_consen 188 AGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKISA 224 (384)
T ss_dssp G--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEEE
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEEe
Confidence 0011112334567789999999999998876544444
No 139
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=48.62 E-value=1.5e+02 Score=35.09 Aligned_cols=66 Identities=14% Similarity=0.225 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcchh---------------------------hh--hcCHHHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYS---------------------------RL--VNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~---------------------------~~--~~~~~~r~~fi~si~~~l 1252 (1490)
..+.++.+|++|+|+++.|-=.-...+..|. .+ +.+++.|+=+.+.+.+++
T Consensus 72 p~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 72 PKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred HHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 4567888899999999865211000000010 01 458999999999888999
Q ss_pred HHcCCCeEEEeecCC
Q psy10300 1253 LEHNFDGLDLDWEYP 1267 (1490)
Q Consensus 1253 ~~~g~DGIDIDwE~P 1267 (1490)
.++|+||+=+|+--|
T Consensus 152 ~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 152 EKYGIDSFKFDAGEA 166 (303)
T ss_pred HHhCCcEEEeCCCCc
Confidence 899999999999544
No 140
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=48.45 E-value=1e+02 Score=39.07 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q psy10300 1237 SQQARSKFIAHVVNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1237 ~~~~r~~fi~si~~~l~~~g~DGIDIDwE 1265 (1490)
+++-|+.+++.+.-+++++|+||+-||--
T Consensus 207 np~V~~~l~~~~~~w~~~~giDGfRlDav 235 (479)
T PRK09441 207 HPEVREELKYWAKWYMETTGFDGFRLDAV 235 (479)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEhhh
Confidence 67788888886666666799999999975
No 141
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=47.49 E-value=1.3e+02 Score=35.50 Aligned_cols=87 Identities=11% Similarity=0.232 Sum_probs=54.0
Q ss_pred HHHHHHHHh-cCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCCCCc
Q psy10300 1202 FYEKVTALK-KKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQVDCKQGPA 1279 (1490)
Q Consensus 1202 ~~~~i~~~k-~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g-~DGIDIDwE~P~~~~~~~~~~~~ 1279 (1490)
+.+.+...+ +.+..++++|+|.+ .+.|++ +++.++++| +|||+|+.--|.... + .....
T Consensus 79 ~~~~~~~~~~~~~~p~i~si~g~~----------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~-g-g~~~~ 139 (301)
T PRK07259 79 FIEEELPWLEEFDTPIIANVAGST----------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKH-G-GMAFG 139 (301)
T ss_pred HHHHHHHHHhccCCcEEEEeccCC----------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCC-C-ccccc
Confidence 444454443 33788999998732 133433 445567888 999999997665211 0 01122
Q ss_pred cchhhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q psy10300 1280 SDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310 (1490)
Q Consensus 1280 ~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~ 1310 (1490)
.+.+.+..+|+++|++. .+.|++-+.+.
T Consensus 140 ~~~~~~~eiv~~vr~~~---~~pv~vKl~~~ 167 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV---KVPVIVKLTPN 167 (301)
T ss_pred cCHHHHHHHHHHHHHhc---CCCEEEEcCCC
Confidence 34566778888888877 35677766653
No 142
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=47.46 E-value=2e+02 Score=34.84 Aligned_cols=138 Identities=17% Similarity=0.202 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHHhCCCeEEEEEeCCCC----CCC-----------------cchhhhhcCH---HHHHHHHHHHHHHHHH
Q psy10300 806 DNRFYERVVTLKKKGVKVSLAIGGWND----SLG-----------------GKYSRLVNSA---TARQRFIEHVVKFLLK 861 (1490)
Q Consensus 806 ~~~~~~~i~~~k~~g~KvllSiGG~~~----s~~-----------------~~f~~~~~~~---~~r~~fi~s~~~~l~~ 861 (1490)
...+.+-..++|++|-|+++=|..... +.. ....+.++.+ +-.+.|++.... .++
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~r-A~~ 160 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARR-AKE 160 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHH-HHH
Confidence 345555667889999999988754320 000 0011112221 233445554443 344
Q ss_pred cCCCeEEEeec---------CCCCCC-CCCCCCCCchhhhHH-HHHHHHHHHhCCCCceEEEEECCChhhHhhhcC----
Q psy10300 862 YQFDGLDLDWE---------YPTCWQ-VNCDAGPDSDKESFG-LFVRELHQAFKPHGLLLSAAVSPSKQVINAAYD---- 926 (1490)
Q Consensus 862 ygfDGvDiDwE---------~P~~~~-~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~---- 926 (1490)
-|||||+|.== .|..+. .|.-+++-+++..|. ..|+++|++.++. +.|.+-+++.......+++
T Consensus 161 AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~-~~vg~Rls~~d~~~~~g~~~~e~ 239 (363)
T COG1902 161 AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGAD-FPVGVRLSPDDFFDGGGLTIEEA 239 (363)
T ss_pred cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCC-ceEEEEECccccCCCCCCCHHHH
Confidence 89999999733 243222 333455556666654 5778888888764 5677777765441112333
Q ss_pred ---hhhhccc--CceEEeeccccC
Q psy10300 927 ---VKALSES--LDWISVMTYDYH 945 (1490)
Q Consensus 927 ---~~~l~~~--vD~i~vmtYD~~ 945 (1490)
.+.|.+. +|++++..-..+
T Consensus 240 ~~la~~L~~~G~~d~i~vs~~~~~ 263 (363)
T COG1902 240 VELAKALEEAGLVDYIHVSEGGYE 263 (363)
T ss_pred HHHHHHHHhcCCccEEEeeccccc
Confidence 2334433 699998776543
No 143
>PLN02877 alpha-amylase/limit dextrinase
Probab=47.40 E-value=81 Score=42.74 Aligned_cols=66 Identities=24% Similarity=0.356 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc-------CcCC--CC-----Ccchhhh----------------hcCHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG-------GWND--SA-----GNKYSRL----------------VNSQQARSKFIAHVV 1249 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG-------G~~~--s~-----~~~f~~~----------------~~~~~~r~~fi~si~ 1249 (1490)
.+|.+.|+.+|++|++|++=|= |... +. ...|.+. ...+..|+-+++++.
T Consensus 466 ~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~ 545 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLL 545 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHH
Confidence 4688899999999999997751 1100 00 0111110 123667888999999
Q ss_pred HHHHHcCCCeEEEeec
Q psy10300 1250 NFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1250 ~~l~~~g~DGIDIDwE 1265 (1490)
-|+++|++||.-||.-
T Consensus 546 yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 546 NWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHhCCCEEEEEcc
Confidence 9999999999999997
No 144
>PLN02411 12-oxophytodienoate reductase
Probab=46.83 E-value=59 Score=39.83 Aligned_cols=67 Identities=15% Similarity=0.237 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEEec
Q psy10300 217 RLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 217 r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
.+.|++.+ ...++-|||||+|+-- .|....+. +-.+|+.+.|-+|. +.|+++|++.... + |.+-++
T Consensus 164 i~~f~~AA-~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~Rt-DeYGGSlENR~RF~lEIi~aVr~~vg~d-~-vgvRiS 239 (391)
T PLN02411 164 VEHYRQAA-LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRT-DEYGGSIENRCRFLMQVVQAVVSAIGAD-R-VGVRVS 239 (391)
T ss_pred HHHHHHHH-HHHHHcCCCEEEEccccchHHHHhCCCccCCCC-CcCCCCHHHHhHHHHHHHHHHHHHcCCC-e-EEEEEc
Confidence 34566655 4556799999999833 24444332 33567777776654 4567777777554 3 666666
Q ss_pred c
Q psy10300 287 G 287 (1490)
Q Consensus 287 ~ 287 (1490)
+
T Consensus 240 ~ 240 (391)
T PLN02411 240 P 240 (391)
T ss_pred c
Confidence 5
No 145
>PRK03705 glycogen debranching enzyme; Provisional
Probab=46.72 E-value=56 Score=42.84 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-------CCCCC-------CC---------cch---h----h-hhcCHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-------GWNDS-------LG---------GKY---S----R-LVNSATARQRFIEHV 855 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-------G~~~s-------~~---------~~f---~----~-~~~~~~~r~~fi~s~ 855 (1490)
.+|.+.|.++|++|+||||=+= +..+. .. +.+ . . -..++.-|+-+++++
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHH
Confidence 4677889999999999998541 00000 00 000 0 0 124678889999999
Q ss_pred HHHHHHcCCCeEEEeec
Q psy10300 856 VKFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 856 ~~~l~~ygfDGvDiDwE 872 (1490)
.-++++||+||+-||--
T Consensus 322 ~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 322 RYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHhCCCEEEEEcH
Confidence 99999999999999975
No 146
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=46.34 E-value=1.6e+02 Score=38.62 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeC-CCCC--------CC--------------cchhh---hhcCHHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGG-WNDS--------LG--------------GKYSR---LVNSATARQRFIEHVVKFLL 860 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG-~~~s--------~~--------------~~f~~---~~~~~~~r~~fi~s~~~~l~ 860 (1490)
..+.+.|.++|++|++|||=+-= -.+. .+ ..|.. -..+++-|+-+++++.-+++
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ 285 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAE 285 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 46778899999999999985420 0000 00 00110 12468889999999999999
Q ss_pred HcCCCeEEEee
Q psy10300 861 KYQFDGLDLDW 871 (1490)
Q Consensus 861 ~ygfDGvDiDw 871 (1490)
+|++||+-||-
T Consensus 286 ey~iDG~R~D~ 296 (613)
T TIGR01515 286 FYHIDGLRVDA 296 (613)
T ss_pred HhCCcEEEEcC
Confidence 99999999995
No 147
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=45.96 E-value=51 Score=40.34 Aligned_cols=70 Identities=10% Similarity=0.160 Sum_probs=42.9
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHH----HHHHHHHHHHhhcCcEEEEEec
Q psy10300 211 TSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFS----TFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 211 ~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~----~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
+++++.|+-+.+.+.++|+++|+|.|-+|+......... ....+....++ .|+++|++++.. +++.....
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~----~~~~~~~~~~~~~~y~l~~~L~~~~P~--v~iE~Css 235 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGS----PSLPEGYHRYVLGLYRLLDRLRARFPD--VLIENCSS 235 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SS----TTS-GHHHHHHHHHHHHHHHHHHHTTT--SEEEE-BT
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCC----CCchHHHHHHHHHHHHHHHHHHHhCCC--cEEEeccC
Confidence 468899999999999999999999999999875543221 11112233444 466666665543 56665543
No 148
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=45.56 E-value=71 Score=38.76 Aligned_cols=107 Identities=17% Similarity=0.212 Sum_probs=73.5
Q ss_pred hhhhHHHhhhhhcCCCceEEEEecc--------------------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEe
Q psy10300 181 KGGYKSFLGLKEANPELKVYLAVKS--------------------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNV 240 (1490)
Q Consensus 181 ~~~~~~~~~LK~~np~lKvllsvGg--------------------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldw 240 (1490)
..+-+-+.+||+++|++++. +||| .|..++..-..-.+.++.+++++++..-|-+-+ -
T Consensus 12 ~~ga~Li~~Lk~~~p~~~~~-GvGG~~M~~~G~~~l~d~~~lsvmG~~Evl~~l~~~~~~~~~~~~~~~~~~pd~vIl-I 89 (373)
T PF02684_consen 12 LHGARLIRALKARDPDIEFY-GVGGPRMQAAGVESLFDMEELSVMGFVEVLKKLPKLKRLFRKLVERIKEEKPDVVIL-I 89 (373)
T ss_pred HHHHHHHHHHHhhCCCcEEE-EEechHHHhCCCceecchHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEE-e
Confidence 45666778899999999876 8887 366666666666678889999999999998765 4
Q ss_pred eCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcE--EEEEecccccccccccChhhhcccceeeeee
Q psy10300 241 KDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQ--LTLTSPGVIDRKTSLVDISVVAPLVDLILLK 311 (1490)
Q Consensus 241 e~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~--ls~~v~~~~~~~~~~yd~~~l~~~vD~i~lm 311 (1490)
.||+-. ..+.+.|| +++.. +.--|+|+...+ ...-++.|.+++|.+.+.
T Consensus 90 D~pgFN-----------------lrlak~lk----~~~~~~~viyYI~PqvWAW-r~~R~~~i~~~~D~ll~i 140 (373)
T PF02684_consen 90 DYPGFN-----------------LRLAKKLK----KRGIPIKVIYYISPQVWAW-RPGRAKKIKKYVDHLLVI 140 (373)
T ss_pred CCCCcc-----------------HHHHHHHH----HhCCCceEEEEECCceeee-CccHHHHHHHHHhheeEC
Confidence 566532 22444444 44443 333456666544 345589999999998653
No 149
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.22 E-value=57 Score=38.87 Aligned_cols=93 Identities=12% Similarity=0.170 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEec
Q psy10300 217 RLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 217 r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
.+.|++.+. .+++-|||||+|+-- .|....+ .+-.+|+.+.+-+| .+.|+++|+++.. ++.|.+-+.
T Consensus 140 i~~~~~aA~-~a~~aGfDgveih~~~gyL~~qFlsp~~n~R-~d~yGgs~enr~r~~~eii~avr~~~g~-d~~i~vris 216 (327)
T cd02803 140 IEDFAAAAR-RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKR-TDEYGGSLENRARFLLEIVAAVREAVGP-DFPVGVRLS 216 (327)
T ss_pred HHHHHHHHH-HHHHcCCCEEEEcchhhhHHHHhcCccccCC-CcccCCCHHHHHHHHHHHHHHHHHHcCC-CceEEEEec
Confidence 345555443 445689999999864 2332222 12234555555443 3566666666633 356666666
Q ss_pred ccccccccccC-------hhhhccc-ceeeeeecc
Q psy10300 287 GVIDRKTSLVD-------ISVVAPL-VDLILLKSF 313 (1490)
Q Consensus 287 ~~~~~~~~~yd-------~~~l~~~-vD~i~lmty 313 (1490)
+... ...+++ ++.|.+. +|||.|..-
T Consensus 217 ~~~~-~~~g~~~~e~~~la~~l~~~G~d~i~vs~g 250 (327)
T cd02803 217 ADDF-VPGGLTLEEAIEIAKALEEAGVDALHVSGG 250 (327)
T ss_pred hhcc-CCCCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5321 112222 2334443 899988554
No 150
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=45.21 E-value=58 Score=42.99 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-------CCCCC-------CC-----------cch------hh--hhcCHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-------GWNDS-------LG-----------GKY------SR--LVNSATARQRFIE 853 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-------G~~~s-------~~-----------~~f------~~--~~~~~~~r~~fi~ 853 (1490)
.+|.+.|.++|++|++|||=+= +..+. .. ..+ .. -..++.-|+-+++
T Consensus 245 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d 324 (688)
T TIGR02100 245 AEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMD 324 (688)
T ss_pred HHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHH
Confidence 4677889999999999998541 10000 00 000 00 1235677888889
Q ss_pred HHHHHHHHcCCCeEEEeec
Q psy10300 854 HVVKFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 854 s~~~~l~~ygfDGvDiDwE 872 (1490)
++.-++++||+||+-||.-
T Consensus 325 ~l~~W~~e~gIDGfR~D~a 343 (688)
T TIGR02100 325 SLRYWVTEMHVDGFRFDLA 343 (688)
T ss_pred HHHHHHHHcCCcEEEEech
Confidence 9999999999999999965
No 151
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=45.19 E-value=32 Score=41.30 Aligned_cols=100 Identities=19% Similarity=0.254 Sum_probs=53.3
Q ss_pred HHHHHHhCCCeEEEEEeCC----------CCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCC-----
Q psy10300 812 RVVTLKKKGVKVSLAIGGW----------NDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTC----- 876 (1490)
Q Consensus 812 ~i~~~k~~g~KvllSiGG~----------~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~----- 876 (1490)
-++++|++|+..++++-.. ..+.+.. .. --.+...+.|+.-|++.++.|.=.||.|++=-|-.
T Consensus 109 fL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~-~~-NLk~d~y~~FA~YLa~Vv~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 109 FLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDG-SD-NLKPDNYDAFADYLADVVKHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SS-S--SS-TT-HHHHHHHHHHHHHHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCcc-cc-ccChhHHHHHHHHHHHHHHHHHhcCCccceeCCcCCCCCC
Confidence 4678888999999987531 1000001 11 12345688899999888888877889998765531
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEE
Q psy10300 877 WQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAA 913 (1490)
Q Consensus 877 ~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a 913 (1490)
|......+..-+.+....||++|+.+|+++|+.-.++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~I~ 223 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTKIS 223 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-EEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 1011122334466778999999999999877654444
No 152
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=44.34 E-value=1.5e+02 Score=35.64 Aligned_cols=117 Identities=14% Similarity=0.208 Sum_probs=67.9
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCcc
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~ 1280 (1490)
.+.+.++.++ .++.|++||+|...+. ....-+.|++.+-.+ .. +.|+|+|++--|... +....+
T Consensus 126 ~~~~~l~~~~-~~~pvivsI~~~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~----g~~~~~ 189 (344)
T PRK05286 126 ALAERLKKAY-RGIPLGINIGKNKDTP---------LEDAVDDYLICLEKL-YP-YADYFTVNISSPNTP----GLRDLQ 189 (344)
T ss_pred HHHHHHHHhc-CCCcEEEEEecCCCCC---------cccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCC----Cccccc
Confidence 3555666655 6788999998853211 112233444444433 33 499999999877632 122356
Q ss_pred chhhHHHHHHHHHHhcCC--CCcEEEEEeCCChhhhhccCChh-hhc-ccCcEEEEee
Q psy10300 1281 DKQGFADLIKELRAAFNP--HDLLLSAAVSPSKAVIDNAYDIP-VMS-ENLDWISVMT 1334 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~--~~~~ls~av~~~~~~~~~~~d~~-~l~-~~vD~i~vmt 1334 (1490)
+.+.+..+++++|++.+. ..+-|++-+++.... ...-.+. .+. .-+|.|.+..
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVKIAPDLSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 777888999999998852 024577777764221 0111121 122 2489998754
No 153
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=44.13 E-value=1.7e+02 Score=31.98 Aligned_cols=111 Identities=15% Similarity=0.152 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCCCCCCCC
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD---GLDLDWEYPTCWQVNCDA 883 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfD---GvDiDwE~P~~~~~~~~~ 883 (1490)
..+...++.+++.|++| |..- |....+..+ .++=++..++.+++++++ -+-||+|....
T Consensus 42 ~~~~~n~~~A~~aGl~v----G~Yh------f~~~~~~~~-a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~------- 103 (192)
T cd06522 42 PYAASQIANAKAAGLKV----SAYH------YAHYTSAAD-AQAEARYFANTAKSLGLSKNTVMVADMEDSSS------- 103 (192)
T ss_pred hHHHHHHHHHHHCCCee----EEEE------EEecCChHH-HHHHHHHHHHHHHHcCCCCCCceEEEeecCCC-------
Confidence 45678899999999865 4322 222222222 222233344456777764 25689994321
Q ss_pred CCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcChhhhcccCceEEeeccc
Q psy10300 884 GPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYD 943 (1490)
Q Consensus 884 ~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD 943 (1490)
...-.+...+|+++++++-.. ...+- ....++...++...+.++ -+.|..|.
T Consensus 104 -~~~~~~~~~~F~~~v~~~g~~---~~~iY--~~~~~~~~~~~~~~~~~~--~lWiA~Y~ 155 (192)
T cd06522 104 -SGNATANVNAFWQTMKAAGYK---NTDVY--TSASWLNSRADTSTLGAK--RVWVAQYP 155 (192)
T ss_pred -cchHHHHHHHHHHHHHHcCCC---CcEEE--ccHHHHhcCCchhhcCCC--CEEEEeCC
Confidence 122334556777777764211 22222 222333333344555544 46677775
No 154
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=44.09 E-value=5.2e+02 Score=29.95 Aligned_cols=21 Identities=33% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHhcCCcEEEEEEc
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIG 1221 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiG 1221 (1490)
...+.-+++|+.|+|||+-+-
T Consensus 105 k~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 105 KAIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHHhcCcEEEeecc
Confidence 345666788889999999764
No 155
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=43.94 E-value=2e+02 Score=34.40 Aligned_cols=118 Identities=16% Similarity=0.203 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCcc
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~ 1280 (1490)
.+.+.++.++..++.+++||+|..... -.+.-+.|++.+-.+ .. ..|+|+|++--|... +.....
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~----g~~~~~ 180 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKDTP---------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTP----GLRDLQ 180 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCc---------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCC----cccccc
Confidence 345556555445789999999854221 112233344433333 23 389999999877632 122356
Q ss_pred chhhHHHHHHHHHHhcCC--CCcEEEEEeCCChhhhhccCCh-hhhc-ccCcEEEEee
Q psy10300 1281 DKQGFADLIKELRAAFNP--HDLLLSAAVSPSKAVIDNAYDI-PVMS-ENLDWISVMT 1334 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~--~~~~ls~av~~~~~~~~~~~d~-~~l~-~~vD~i~vmt 1334 (1490)
+.+.+..+++++|+.... +.+-|++-+++.... +....+ +.+. .-+|+|.+..
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~-~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSD-EELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCH-HHHHHHHHHHHHcCCcEEEEEC
Confidence 777888999999998752 234567777654211 011111 1122 2489887643
No 156
>PF11921 DUF3439: Domain of unknown function (DUF3439); InterPro: IPR024592 This uncharacterised C-terminal domain is found in variable lymphocyte receptor proteins. VLR are proteins consisting of leucine-rich repeats (LRR) that are assembled into functional receptors through somatic diversification of the incomplete germ-line VLR gene in lamprey and hagfish []. ; PDB: 3RFJ_A 3G3B_A 2R9U_C 2O6S_A 3A79_B 3RFS_A 2O6R_A 3V47_B 3V44_A 3A7C_A ....
Probab=43.86 E-value=13 Score=35.28 Aligned_cols=14 Identities=29% Similarity=0.359 Sum_probs=9.0
Q ss_pred CCCCCCcCCCCCCC
Q psy10300 657 DWPYRTKCKQTSAT 670 (1490)
Q Consensus 657 ~~~~~v~C~~~~~~ 670 (1490)
.-|++..|+++..+
T Consensus 26 v~PDSAKCSGTntP 39 (122)
T PF11921_consen 26 VDPDSAKCSGTNTP 39 (122)
T ss_dssp B-TTGSBBTTT-SB
T ss_pred cCCCccccCCCCCc
Confidence 56888899886543
No 157
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=43.80 E-value=94 Score=41.83 Aligned_cols=92 Identities=14% Similarity=0.139 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEee---------CCCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVK---------DPALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe---------~p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v 285 (1490)
..+.|++.+. -+++-|||||+|+-- -|....+. +-.+|+-+.|-.| .+.|+.+|++... ++.|++-+
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N~Rt-D~yGGslenR~r~~~eiv~~ir~~~~~-~~~v~~ri 625 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTNQRT-DEYGGSLENRLRYPLEVFRAVRAVWPA-EKPMSVRI 625 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCC-CCCCCCHHHHhHHHHHHHHHHHHhcCC-CCeeEEEE
Confidence 3456666554 456789999999966 46544332 2235555544333 3444555555533 46777777
Q ss_pred cccccccccccCh-------hhhccc-ceeeeee
Q psy10300 286 PGVIDRKTSLVDI-------SVVAPL-VDLILLK 311 (1490)
Q Consensus 286 ~~~~~~~~~~yd~-------~~l~~~-vD~i~lm 311 (1490)
.+... ...+.++ +.|.+. +|+|+|.
T Consensus 626 ~~~~~-~~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 626 SAHDW-VEGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccc-cCCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 65332 2223332 333333 7888874
No 158
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=43.71 E-value=2.1e+02 Score=33.81 Aligned_cols=34 Identities=18% Similarity=0.294 Sum_probs=29.8
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCC
Q psy10300 842 VNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPT 875 (1490)
Q Consensus 842 ~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~ 875 (1490)
+.++++|+-+.+.+..++.++|+||+=+|+--|.
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 167 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEAS 167 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcc
Confidence 4688999999999999999999999999997653
No 159
>PRK13335 superantigen-like protein; Reviewed
Probab=43.67 E-value=26 Score=40.42 Aligned_cols=7 Identities=29% Similarity=0.767 Sum_probs=3.5
Q ss_pred EEEeCCC
Q psy10300 825 LAIGGWN 831 (1490)
Q Consensus 825 lSiGG~~ 831 (1490)
.|+||-+
T Consensus 244 ySiGGVT 250 (356)
T PRK13335 244 YSVGGIT 250 (356)
T ss_pred eeeccEe
Confidence 3566643
No 160
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=42.85 E-value=71 Score=35.84 Aligned_cols=71 Identities=20% Similarity=0.281 Sum_probs=43.3
Q ss_pred HhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCC-CCCCC-CchhhhHHH
Q psy10300 817 KKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVN-CDAGP-DSDKESFGL 894 (1490)
Q Consensus 817 k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~-~~~~~-~~d~~~~~~ 894 (1490)
...+..++++|+|.. + +.|++.+ ..+.+.|||||+|..=.|...... ..++. ..+......
T Consensus 51 ~~~~~p~~~qi~g~~-------------~---~~~~~aa-~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~e 113 (231)
T cd02801 51 NPEERPLIVQLGGSD-------------P---ETLAEAA-KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAE 113 (231)
T ss_pred CccCCCEEEEEcCCC-------------H---HHHHHHH-HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHH
Confidence 445899999999842 1 2344433 344568999999998766421111 11111 124455678
Q ss_pred HHHHHHHHhC
Q psy10300 895 FVRELHQAFK 904 (1490)
Q Consensus 895 ll~eLr~~l~ 904 (1490)
+++++|++.+
T Consensus 114 ii~~v~~~~~ 123 (231)
T cd02801 114 IVRAVREAVP 123 (231)
T ss_pred HHHHHHHhcC
Confidence 8888888775
No 161
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=42.38 E-value=32 Score=31.69 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred cCcCCCCCcchhhhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEeec
Q psy10300 1221 GGWNDSAGNKYSRLVNS-QQARSKFIAHVVNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1221 GG~~~s~~~~f~~~~~~-~~~r~~fi~si~~~l~~~g~DGIDIDwE 1265 (1490)
|-|.... ..|.....+ +..|+.+++.|++.+..-.||||-+|--
T Consensus 32 ~~W~~~~-~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 32 SEWPGYP-GHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eecCCCC-ceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 5565543 344444445 9999999999999999889999999853
No 162
>PRK13042 superantigen-like protein; Reviewed
Probab=42.31 E-value=39 Score=38.41 Aligned_cols=7 Identities=29% Similarity=0.767 Sum_probs=4.3
Q ss_pred EEEeCCC
Q psy10300 825 LAIGGWN 831 (1490)
Q Consensus 825 lSiGG~~ 831 (1490)
-|+||-+
T Consensus 179 ~syGGVT 185 (291)
T PRK13042 179 YSVGGIT 185 (291)
T ss_pred EEECCEE
Confidence 4667754
No 163
>PRK10785 maltodextrin glucosidase; Provisional
Probab=41.80 E-value=85 Score=40.88 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCcC-CC-------------------CC---c-----------ch---hhh----hcC
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGGWN-DS-------------------AG---N-----------KY---SRL----VNS 1237 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG~~-~s-------------------~~---~-----------~f---~~~----~~~ 1237 (1490)
.+.|.+.+.++|++|+||||=+==.. .. .+ + .| ..| ..+
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~n 304 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQS 304 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCC
Confidence 35688999999999999997652100 00 00 0 01 111 246
Q ss_pred HHHHHHHHH---HHH-HHHHH-cCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCC
Q psy10300 1238 QQARSKFIA---HVV-NFILE-HNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1238 ~~~r~~fi~---si~-~~l~~-~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
++.|+.+++ +++ .+|++ +|+||.-||--.-. ........-..|++++|+++++
T Consensus 305 p~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v--------~~~~~~~~~~~f~~~~~~~vk~ 362 (598)
T PRK10785 305 EEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHML--------GEGGGARNNLQHVAGITQAAKE 362 (598)
T ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHh--------ccccCccccHHHHHHHHHHHHh
Confidence 888898886 344 47776 89999999964100 0001112234688888888764
No 164
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=40.80 E-value=2e+02 Score=34.31 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCc
Q psy10300 808 RFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDS 887 (1490)
Q Consensus 808 ~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~ 887 (1490)
.+.++++.++..++.+++||+|..... -++..+.|++.+-.+ .. ..|+|+|++-.|...+ .....
T Consensus 116 ~~~~~l~~~~~~~~plivsi~g~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~ielN~scP~~~g----~~~~~ 180 (327)
T cd04738 116 AVAKRLKKRRPRGGPLGVNIGKNKDTP---------LEDAVEDYVIGVRKL-GP-YADYLVVNVSSPNTPG----LRDLQ 180 (327)
T ss_pred HHHHHHHHhccCCCeEEEEEeCCCCCc---------ccccHHHHHHHHHHH-Hh-hCCEEEEECCCCCCCc----ccccc
Confidence 345666665545788999999854210 112233455444443 23 3899999998886321 12246
Q ss_pred hhhhHHHHHHHHHHHhCC--CCceEEEEECCC
Q psy10300 888 DKESFGLFVRELHQAFKP--HGLLLSAAVSPS 917 (1490)
Q Consensus 888 d~~~~~~ll~eLr~~l~~--~~~~ls~a~~~~ 917 (1490)
+.+.+..+++++|+.... +.+-|.+-+.+.
T Consensus 181 ~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~ 212 (327)
T cd04738 181 GKEALRELLTAVKEERNKLGKKVPLLVKIAPD 212 (327)
T ss_pred CHHHHHHHHHHHHHHHhhcccCCCeEEEeCCC
Confidence 777888999999998752 124455655553
No 165
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=40.77 E-value=56 Score=38.51 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=53.4
Q ss_pred HHHHHhCCCeEEEEEe-CCCCC--CCcchhhhh-cCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCch
Q psy10300 813 VVTLKKKGVKVSLAIG-GWNDS--LGGKYSRLV-NSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSD 888 (1490)
Q Consensus 813 i~~~k~~g~KvllSiG-G~~~s--~~~~f~~~~-~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d 888 (1490)
|.+.|..|+.|+=.|- -|... ..+-+..|+ .+++..=-|++.++++.+-|||||--|+=|-- +..+.+
T Consensus 133 IDaaHrNGVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~--------G~~~~~ 204 (553)
T COG4724 133 IDAAHRNGVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETT--------GDVKPL 204 (553)
T ss_pred hhhhhcCCCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEeccccc--------CCCcch
Confidence 6778888998885542 11111 112344555 33333444889999999999999999998822 334566
Q ss_pred hhhHHHHHHHHHHH
Q psy10300 889 KESFGLFVRELHQA 902 (1490)
Q Consensus 889 ~~~~~~ll~eLr~~ 902 (1490)
.+++.+||..+++.
T Consensus 205 a~~M~~f~ly~ke~ 218 (553)
T COG4724 205 AEKMRQFMLYSKEY 218 (553)
T ss_pred HHHHHHHHHHHHhc
Confidence 77777777777643
No 166
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=40.26 E-value=65 Score=37.15 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCc
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA 1279 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~ 1279 (1490)
..+.+.++-+|++||+|+|=+--.... .... .+++ .+.+.+.+++.|+.||-||+- .
T Consensus 73 ~dl~elv~Ya~~KgVgi~lw~~~~~~~---~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~-------------~ 129 (273)
T PF10566_consen 73 FDLPELVDYAKEKGVGIWLWYHSETGG---NVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFM-------------D 129 (273)
T ss_dssp --HHHHHHHHHHTT-EEEEEEECCHTT---BHHH------HHCC-HHHHHHHHHHCTEEEEEEE---------------S
T ss_pred cCHHHHHHHHHHcCCCEEEEEeCCcch---hhHh------HHHH-HHHHHHHHHHcCCCEEeeCcC-------------C
Confidence 346788899999999999866321111 1111 2223 378899999999999999997 2
Q ss_pred cchhhHHHHHHHHHHhcCCCCcEE
Q psy10300 1280 SDKQGFADLIKELRAAFNPHDLLL 1303 (1490)
Q Consensus 1280 ~d~~~~~~ll~eLr~~l~~~~~~l 1303 (1490)
.+.+..+.+.+++-++-.+.+++|
T Consensus 130 ~d~Q~~v~~y~~i~~~AA~~~Lmv 153 (273)
T PF10566_consen 130 RDDQEMVNWYEDILEDAAEYKLMV 153 (273)
T ss_dssp STSHHHHHHHHHHHHHHHHTT-EE
T ss_pred CCCHHHHHHHHHHHHHHHHcCcEE
Confidence 244555555555544443333333
No 167
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=40.14 E-value=49 Score=40.92 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=9.6
Q ss_pred ChhhhcccCceEEeec
Q psy10300 926 DVKALSESLDWISVMT 941 (1490)
Q Consensus 926 ~~~~l~~~vD~i~vmt 941 (1490)
|+....+-+.|+|-|.
T Consensus 467 Di~tAnDGl~YynKM~ 482 (574)
T PF07462_consen 467 DIATANDGLAYYNKMG 482 (574)
T ss_pred hHHHhhhHHHHHHHHH
Confidence 4555556666666665
No 168
>KOG0260|consensus
Probab=39.10 E-value=1.8e+02 Score=39.48 Aligned_cols=10 Identities=10% Similarity=0.162 Sum_probs=4.6
Q ss_pred CChHHHHHHH
Q psy10300 476 KYPLLSAVVS 485 (1490)
Q Consensus 476 ~~PLl~~i~~ 485 (1490)
.-=+|+.|-.
T Consensus 1235 ~D~~l~~Ie~ 1244 (1605)
T KOG0260|consen 1235 DDVFLKCIEA 1244 (1605)
T ss_pred hhHHHHHHHH
Confidence 3345555543
No 169
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=38.49 E-value=52 Score=40.70 Aligned_cols=9 Identities=22% Similarity=0.231 Sum_probs=3.8
Q ss_pred cHHHHHHHH
Q psy10300 344 NIESAVYNW 352 (1490)
Q Consensus 344 ~v~~~v~~~ 352 (1490)
|.+-.+++|
T Consensus 149 Nt~iLlkyY 157 (574)
T PF07462_consen 149 NTEILLKYY 157 (574)
T ss_pred hHHHHHHHH
Confidence 344444444
No 170
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=38.16 E-value=2.8e+02 Score=33.41 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=67.6
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCc
Q psy10300 808 RFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDS 887 (1490)
Q Consensus 808 ~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~ 887 (1490)
.+.+++...+ .++.|++||+|...+. ....-+.|+..+..+ .. +.|+|+|++-.|...+ ....+
T Consensus 126 ~~~~~l~~~~-~~~pvivsI~~~~~~~---------~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g----~~~~~ 189 (344)
T PRK05286 126 ALAERLKKAY-RGIPLGINIGKNKDTP---------LEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPG----LRDLQ 189 (344)
T ss_pred HHHHHHHHhc-CCCcEEEEEecCCCCC---------cccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCC----ccccc
Confidence 3456666665 6788999999853210 111234455555544 33 4999999999886321 22256
Q ss_pred hhhhHHHHHHHHHHHhCCC--CceEEEEECCChhhHhhhcCh-hhhc-ccCceEEeec
Q psy10300 888 DKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDV-KALS-ESLDWISVMT 941 (1490)
Q Consensus 888 d~~~~~~ll~eLr~~l~~~--~~~ls~a~~~~~~~~~~~~~~-~~l~-~~vD~i~vmt 941 (1490)
+.+.+..+++++|++.+.. .+-|.+-+.+..... ....+ +.+. .-+|.|.+..
T Consensus 190 ~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~-~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 190 YGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDE-ELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred CHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHH-HHHHHHHHHHHhCCcEEEEeC
Confidence 7778889999999988620 245666665542210 01112 1222 2478888764
No 171
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.87 E-value=1.1e+02 Score=36.50 Aligned_cols=133 Identities=18% Similarity=0.266 Sum_probs=68.9
Q ss_pred HHHHHHHHHHhcCCcEEEEEE--cCcCCCCC----cc-------------hhhhhcCHHH----HHHHHHHHHHHHHHcC
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAI--GGWNDSAG----NK-------------YSRLVNSQQA----RSKFIAHVVNFILEHN 1256 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~Kvllsi--GG~~~s~~----~~-------------f~~~~~~~~~----r~~fi~si~~~l~~~g 1256 (1490)
..+.+.+..+|++|.|+++-| +|...... .. ..+. .+.+. .+.|++... .+.+-|
T Consensus 77 ~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-mt~~ei~~~i~~~~~aA~-~a~~aG 154 (327)
T cd02803 77 PGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPRE-MTKEEIEQIIEDFAAAAR-RAKEAG 154 (327)
T ss_pred HHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCc-CCHHHHHHHHHHHHHHHH-HHHHcC
Confidence 456666778888898887555 33221100 00 0011 12233 344444333 344579
Q ss_pred CCeEEEeecC---------CCC-CCCCCCCCCccchhhH-HHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCC------
Q psy10300 1257 FDGLDLDWEY---------PKC-WQVDCKQGPASDKQGF-ADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYD------ 1319 (1490)
Q Consensus 1257 ~DGIDIDwE~---------P~~-~~~~~~~~~~~d~~~~-~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d------ 1319 (1490)
||||+|.--+ |.. ...+..+++.+++..| ...|+++|++++. ++.|.+.+.+.... ..+++
T Consensus 155 fDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~-d~~i~vris~~~~~-~~g~~~~e~~~ 232 (327)
T cd02803 155 FDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGP-DFPVGVRLSADDFV-PGGLTLEEAIE 232 (327)
T ss_pred CCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCC-CceEEEEechhccC-CCCCCHHHHHH
Confidence 9999998742 211 1112223333344333 4688888988854 46777777654211 11122
Q ss_pred -hhhhccc-CcEEEEeecc
Q psy10300 1320 -IPVMSEN-LDWISVMTYD 1336 (1490)
Q Consensus 1320 -~~~l~~~-vD~i~vmtYD 1336 (1490)
.+.|.+. +|||.|..-.
T Consensus 233 la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 233 IAKALEEAGVDALHVSGGS 251 (327)
T ss_pred HHHHHHHcCCCEEEeCCCC
Confidence 2233333 8999986644
No 172
>PF03427 CBM_19: Carbohydrate binding domain (family 19); InterPro: IPR005089 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM19 from CAZY which consists of 60-70 residues with chitin-binding function.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process
Probab=37.13 E-value=25 Score=30.40 Aligned_cols=20 Identities=20% Similarity=0.694 Sum_probs=18.3
Q ss_pred cceeecCCceeeeeCCCCcc
Q psy10300 629 KYQYCIWGSYQVASCSPGLY 648 (1490)
Q Consensus 629 ~yy~C~~G~~~~~~Cp~Gl~ 648 (1490)
+|=.|.+|.+....||.|+.
T Consensus 36 ~faiC~~G~Wv~~~C~~Gt~ 55 (61)
T PF03427_consen 36 SFAICDHGTWVITPCPAGTT 55 (61)
T ss_pred CEEEcCCCcEEEeeCCCCCE
Confidence 58899999999999999975
No 173
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.86 E-value=5.8e+02 Score=28.88 Aligned_cols=50 Identities=22% Similarity=0.256 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEe
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD 1263 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDID 1263 (1490)
-+.+.+..+|++|++|.. ||| .|..++ .+..++..++.+++.|||.|+|.
T Consensus 42 ~l~eki~la~~~~V~v~~--GGt------l~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS 91 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYP--GGT------LFEIAH-----SKGKFDEYLNECDELGFEAVEIS 91 (237)
T ss_pred HHHHHHHHHHHcCCeEeC--Ccc------HHHHHH-----HhhhHHHHHHHHHHcCCCEEEEc
Confidence 366778888998988765 463 244333 34677888889999999999994
No 174
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=36.45 E-value=1.2e+02 Score=39.11 Aligned_cols=106 Identities=13% Similarity=0.113 Sum_probs=72.2
Q ss_pred hhhhHHHhhhhhcCCCceEEEEecc--------------------chhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEe
Q psy10300 181 KGGYKSFLGLKEANPELKVYLAVKS--------------------NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNV 240 (1490)
Q Consensus 181 ~~~~~~~~~LK~~np~lKvllsvGg--------------------~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldw 240 (1490)
..+-.-+.+||+++|++++. +||| .|..++..-..-.+..+.+++.+++..-|-+-+ -
T Consensus 240 lhgA~Li~aLk~~~P~i~~~-GvGG~~M~aaG~e~l~d~~eLsVmG~~EVL~~l~~l~~~~~~l~~~i~~~kPD~vIl-I 317 (608)
T PRK01021 240 TLGGNLLKEIKALYPDIHCF-GVGGPQMRAEGFHPLFNMEEFQVSGFWEVLLALFKLWYRYRKLYKTILKTNPRTVIC-I 317 (608)
T ss_pred HHHHHHHHHHHhcCCCcEEE-EEccHHHHhCcCcccCChHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEE-e
Confidence 34566777899999998765 8888 356666666666778889999999999998776 4
Q ss_pred eCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCc--EEEEEecccccccccccChhhhcccceeeee
Q psy10300 241 KDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNY--QLTLTSPGVIDRKTSLVDISVVAPLVDLILL 310 (1490)
Q Consensus 241 e~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~--~ls~~v~~~~~~~~~~yd~~~l~~~vD~i~l 310 (1490)
.||+-. ..+.|.+|+ .|. .+-=-|+|+...+. .-.++.|.+++|.+.+
T Consensus 318 D~PgFN-----------------lrLAK~lkk----~Gi~ipviyYVsPqVWAWR-~~Rikki~k~vD~ll~ 367 (608)
T PRK01021 318 DFPDFH-----------------FLLIKKLRK----RGYKGKIVHYVCPSIWAWR-PKRKTILEKYLDLLLL 367 (608)
T ss_pred CCCCCC-----------------HHHHHHHHh----cCCCCCEEEEECccceeeC-cchHHHHHHHhhhhee
Confidence 566532 124455544 352 33333566655443 3468999999998865
No 175
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=36.03 E-value=1.1e+02 Score=36.73 Aligned_cols=93 Identities=17% Similarity=0.180 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEee--C-------CCCCCCCCccccchhhhHHHH-HHHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVK--D-------PALNDEDDDDLESIANERSDF-STFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe--~-------p~~~~~~~~~~~~~~~d~~~f-~~ll~eLr~~~~~~~~~ls~~v 285 (1490)
..+.|++.+.. +++-|||||+|+-- | |....+. +-.+|+.+.|-.| .+.|+++|+++.. ++.|.+-+
T Consensus 152 ii~~~~~aA~~-a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~-D~yGgsl~nr~rf~~eiv~aIR~~vG~-d~~v~vri 228 (336)
T cd02932 152 VVDAFVAAARR-AVEAGFDVIEIHAAHGYLLHQFLSPLSNKRT-DEYGGSLENRMRFLLEVVDAVRAVWPE-DKPLFVRI 228 (336)
T ss_pred HHHHHHHHHHH-HHHcCCCEEEEccccccHHHHhcCCccCCCC-cccCCCHHHHhHHHHHHHHHHHHHcCC-CceEEEEE
Confidence 44567765544 45679999999852 2 4333222 2235555555443 4566777776633 35666666
Q ss_pred cccccccccccCh-------hhhccc-ceeeeeec
Q psy10300 286 PGVIDRKTSLVDI-------SVVAPL-VDLILLKS 312 (1490)
Q Consensus 286 ~~~~~~~~~~yd~-------~~l~~~-vD~i~lmt 312 (1490)
.+... ...++++ +.|.+. +|||.|..
T Consensus 229 ~~~~~-~~~g~~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 229 SATDW-VEGGWDLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred ccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 54321 2233333 233332 67887643
No 176
>PLN02877 alpha-amylase/limit dextrinase
Probab=35.91 E-value=1.6e+02 Score=40.04 Aligned_cols=66 Identities=24% Similarity=0.432 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-------CCCC--C-----CCcchhh---------------h-hcCHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-------GWND--S-----LGGKYSR---------------L-VNSATARQRFIEHVV 856 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-------G~~~--s-----~~~~f~~---------------~-~~~~~~r~~fi~s~~ 856 (1490)
.+|.+.|++||++|++|+|=+= |..+ + ..+.|.. . ...+.-|+-+++++.
T Consensus 466 ~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~ 545 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLL 545 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHH
Confidence 3567789999999999998541 1100 0 0001110 1 123566788899999
Q ss_pred HHHHHcCCCeEEEeec
Q psy10300 857 KFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 857 ~~l~~ygfDGvDiDwE 872 (1490)
-++++|++||+-||.=
T Consensus 546 yW~~ey~VDGFRFDlm 561 (970)
T PLN02877 546 NWAVNYKVDGFRFDLM 561 (970)
T ss_pred HHHHHhCCCEEEEEcc
Confidence 9999999999999988
No 177
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=34.63 E-value=1.3e+02 Score=33.23 Aligned_cols=66 Identities=17% Similarity=0.246 Sum_probs=44.7
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCChhhhcccC
Q psy10300 1248 VVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENL 1327 (1490)
Q Consensus 1248 i~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~l~~~v 1327 (1490)
.++.+.+.|.|-|-+.+| .......+++.+|+ .|....+++.|.... -.+..+.+.+
T Consensus 72 ~i~~~~~~g~~~i~~H~E---------------~~~~~~~~i~~ik~----~g~k~GialnP~T~~----~~~~~~l~~v 128 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAE---------------ATEDPKETIKYIKE----AGIKAGIALNPETPV----EELEPYLDQV 128 (201)
T ss_dssp HHHHHHHHT-SEEEEEGG---------------GTTTHHHHHHHHHH----TTSEEEEEE-TTS-G----GGGTTTGCCS
T ss_pred HHHHHHhcCCCEEEEccc---------------chhCHHHHHHHHHH----hCCCEEEEEECCCCc----hHHHHHhhhc
Confidence 455567779999999999 12345566777775 377888888876533 2355677889
Q ss_pred cEEEEeecc
Q psy10300 1328 DWISVMTYD 1336 (1490)
Q Consensus 1328 D~i~vmtYD 1336 (1490)
|+|.||+-+
T Consensus 129 D~VlvMsV~ 137 (201)
T PF00834_consen 129 DMVLVMSVE 137 (201)
T ss_dssp SEEEEESS-
T ss_pred CEEEEEEec
Confidence 999999976
No 178
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=34.48 E-value=51 Score=30.43 Aligned_cols=43 Identities=28% Similarity=0.415 Sum_probs=33.8
Q ss_pred eCCCCCCCcchhhhhcC-HHHHHHHHHHHHHHHHHcCCCeEEEee
Q psy10300 828 GGWNDSLGGKYSRLVNS-ATARQRFIEHVVKFLLKYQFDGLDLDW 871 (1490)
Q Consensus 828 GG~~~s~~~~f~~~~~~-~~~r~~fi~s~~~~l~~ygfDGvDiDw 871 (1490)
|-|.+. ...+.....+ +.-|..+++.|++.+..-.||||-+|=
T Consensus 32 ~~W~~~-~~~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 32 SEWPGY-PGHYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eecCCC-CceeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 556643 3455555555 999999999999999988999999984
No 179
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=34.39 E-value=3.4e+02 Score=32.56 Aligned_cols=109 Identities=20% Similarity=0.344 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCcEEEEEEc--CcCCCCC-cch-----h----------------hhhcCH----HHHHHHHHHHHHH
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIG--GWNDSAG-NKY-----S----------------RLVNSQ----QARSKFIAHVVNF 1251 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiG--G~~~s~~-~~f-----~----------------~~~~~~----~~r~~fi~si~~~ 1251 (1490)
..+.+....+|++|.|+++-|. |...... ... + +.+ +. +-.+.|++....
T Consensus 80 ~~~k~l~~~vh~~Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~~~~~~~~~~~m-t~~eI~~ii~~f~~AA~~- 157 (341)
T PF00724_consen 80 PGLKKLADAVHAHGAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSPIKFMGYPPREM-TEEEIEEIIEDFAQAARR- 157 (341)
T ss_dssp HHHHHHHHHHHHTTSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTTTTETSCEEEE---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCccceeeccccccccCcccCCCCccCcccccccCcccccCCCCCeeC-CHHHHHHHHHHHHHHHHH-
Confidence 4566777788999999998763 3211100 000 0 011 22 333455554444
Q ss_pred HHHcCCCeEEEeecC---------CC-CCCCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeCCCh
Q psy10300 1252 ILEHNFDGLDLDWEY---------PK-CWQVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVSPSK 1311 (1490)
Q Consensus 1252 l~~~g~DGIDIDwE~---------P~-~~~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~~~~ 1311 (1490)
.++-|||||+|.--+ |. +...|..+++.+++..|. ..|+++|+++.. .+.|.+-+++..
T Consensus 158 A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~-d~~v~~Rls~~~ 227 (341)
T PF00724_consen 158 AKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGP-DFPVGVRLSPDD 227 (341)
T ss_dssp HHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTG-GGEEEEEEETTC
T ss_pred HHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcC-CceEEEEEeeec
Confidence 445799999998763 22 112344455666776665 488999999864 577888887754
No 180
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.17 E-value=1.6e+02 Score=35.03 Aligned_cols=79 Identities=11% Similarity=0.165 Sum_probs=48.2
Q ss_pred hcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCC--ccchhhHHH
Q psy10300 1210 KKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGP--ASDKQGFAD 1287 (1490)
Q Consensus 1210 k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~--~~d~~~~~~ 1287 (1490)
+..+..+++.|+|.+. +.|+ ..+..+++.|+|||||+.--|.....+...++ ..+......
T Consensus 59 ~~~~~p~i~ql~g~~~----------------~~~~-~aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~e 121 (319)
T TIGR00737 59 AEDETPISVQLFGSDP----------------DTMA-EAAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGK 121 (319)
T ss_pred CCccceEEEEEeCCCH----------------HHHH-HHHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHH
Confidence 4446788899988432 1222 24446678899999999887743222222222 234556667
Q ss_pred HHHHHHHhcCCCCcEEEEEeC
Q psy10300 1288 LIKELRAAFNPHDLLLSAAVS 1308 (1490)
Q Consensus 1288 ll~eLr~~l~~~~~~ls~av~ 1308 (1490)
+++++|+++. +.+++-+.
T Consensus 122 i~~~vr~~~~---~pv~vKir 139 (319)
T TIGR00737 122 IVKAVVDAVD---IPVTVKIR 139 (319)
T ss_pred HHHHHHhhcC---CCEEEEEE
Confidence 8888888774 44555543
No 181
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=34.07 E-value=2e+02 Score=33.85 Aligned_cols=91 Identities=11% Similarity=0.148 Sum_probs=55.3
Q ss_pred HHHhhhhhcCCCceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHH
Q psy10300 185 KSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFS 264 (1490)
Q Consensus 185 ~~~~~LK~~np~lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~ 264 (1490)
+.+..+++..++..+++++-|.+ ++ ..|++ +++.+++.++|+|||+.-.|...... ........+.+.+.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~G~~-----~~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~-~~G~~l~~~~~~~~ 157 (299)
T cd02940 88 KEIRELKKDFPDKILIASIMCEY-----NK---EDWTE-LAKLVEEAGADALELNFSCPHGMPER-GMGAAVGQDPELVE 157 (299)
T ss_pred HHHHHHHhhCCCCeEEEEecCCC-----CH---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCC-CCchhhccCHHHHH
Confidence 34445666555667888886642 22 34444 44556778999999999998752210 00011224677788
Q ss_pred HHHHHHHHHHhhcCcEEEEEeccc
Q psy10300 265 TFIQELSSTLRRNNYQLTLTSPGV 288 (1490)
Q Consensus 265 ~ll~eLr~~~~~~~~~ls~~v~~~ 288 (1490)
++++.+|+.. +.-|++-+++.
T Consensus 158 ~iv~~v~~~~---~~Pv~vKl~~~ 178 (299)
T cd02940 158 EICRWVREAV---KIPVIAKLTPN 178 (299)
T ss_pred HHHHHHHHhc---CCCeEEECCCC
Confidence 8888888765 34566666653
No 182
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=33.82 E-value=2.9e+02 Score=35.60 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCC---CCC----CCCccchhhHHHHHHHHHHhcCC
Q psy10300 1237 SQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQV---DCK----QGPASDKQGFADLIKELRAAFNP 1298 (1490)
Q Consensus 1237 ~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~---~~~----~~~~~d~~~~~~ll~eLr~~l~~ 1298 (1490)
+++-|+.+++. +.+..+.|+||+-||--.-..... +.. ...-.+......|++++|+.++.
T Consensus 168 np~v~~~i~~~-~~~W~~~giDGfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 235 (543)
T TIGR02403 168 NPEVREELKDV-VNFWRDKGVDGFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFG 235 (543)
T ss_pred CHHHHHHHHHH-HHHHHHcCCCEEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhc
Confidence 67777766664 555556899999999531100000 000 00012345567899999988754
No 183
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=33.44 E-value=8.8e+02 Score=29.70 Aligned_cols=66 Identities=17% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhh-------hcCHHHHHH---HHHHHHHHHHHcCCCeEEEeecCCC
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRL-------VNSQQARSK---FIAHVVNFILEHNFDGLDLDWEYPK 1268 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~-------~~~~~~r~~---fi~si~~~l~~~g~DGIDIDwE~P~ 1268 (1490)
+.+...++|++|+|+-+-...+.... ..|... ...+...+- +..+|.++|.+||-|.|=+|+.++.
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~-p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFN-PLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCC-CccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 34567778889999998777543221 112110 011122222 3689999999999999999988654
No 184
>PRK14706 glycogen branching enzyme; Provisional
Probab=33.34 E-value=1.1e+02 Score=40.18 Aligned_cols=64 Identities=16% Similarity=0.172 Sum_probs=40.9
Q ss_pred cCHHHHHHHHHHHHHHHHhcCCceeEEEee-------CCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcC
Q psy10300 212 SDRESRLNFISSVLEMFDMYKFDGLDLNVK-------DPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNN 278 (1490)
Q Consensus 212 ~~~~~r~~fi~siv~~l~~~~fDGvdldwe-------~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~ 278 (1490)
.+++.|+-+++++.-||+++++||+-+|=- |-... -.+...++. ....=..||++|++.++...
T Consensus 279 ~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~-~~~~~~gg~--~n~~a~~fl~~ln~~v~~~~ 349 (639)
T PRK14706 279 GRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTE-WVPNIHGGR--ENLEAIAFLKRLNEVTHHMA 349 (639)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCccc-ccccccCCc--ccHHHHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999931 11000 000000111 11234678899988888754
No 185
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=32.96 E-value=71 Score=36.41 Aligned_cols=61 Identities=28% Similarity=0.354 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCceeEEEeeCCC----CCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcEEEEE
Q psy10300 219 NFISSVLEMFDMYKFDGLDLNVKDPA----LNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLT 284 (1490)
Q Consensus 219 ~fi~siv~~l~~~~fDGvdldwe~p~----~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~ls~~ 284 (1490)
..|.+-++-|.+-|||||-||+--+- ..++ ....+.......|+.+|++..+..+-++.+.
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~-----~~~~~~~k~m~~~i~~i~~~~ra~~~~~~Vi 190 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDR-----ETGVNAAKKMVKFIAAIAEYARAANPLFRVI 190 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhcc-----cccccHHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 44567777788899999999975332 1110 1223345667888899998888876554444
No 186
>PLN02361 alpha-amylase
Probab=32.78 E-value=1.4e+02 Score=36.76 Aligned_cols=66 Identities=15% Similarity=0.336 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc-----CcC-C------------------------------CCCcchhhh----hcCH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG-----GWN-D------------------------------SAGNKYSRL----VNSQ 1238 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG-----G~~-~------------------------------s~~~~f~~~----~~~~ 1238 (1490)
.+++.+.|.++|++|+||++=+= |.. + ..+..|..+ ..++
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np 154 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQH 154 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCH
Confidence 45688999999999999997541 100 0 000011111 1357
Q ss_pred HHHHHHHHHHHHHHH-HcCCCeEEEeec
Q psy10300 1239 QARSKFIAHVVNFIL-EHNFDGLDLDWE 1265 (1490)
Q Consensus 1239 ~~r~~fi~si~~~l~-~~g~DGIDIDwE 1265 (1490)
.-|+.+++-+ ++++ +.|+||+-||.-
T Consensus 155 ~Vr~~l~~~~-~wl~~~~GiDGfRlDav 181 (401)
T PLN02361 155 FVRKDIIGWL-IWLRNDVGFQDFRFDFA 181 (401)
T ss_pred HHHHHHHHHH-HHHHhcCCCCEEEEecc
Confidence 7788777766 4555 599999999975
No 187
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=32.71 E-value=4.3e+02 Score=28.89 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCCCCCCCC
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD---GLDLDWEYPTCWQVNCDA 883 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfD---GvDiDwE~P~~~~~~~~~ 883 (1490)
..+...++.+++.|+++ |..- |.....+....++-++..++.++.+++. =+-||+|.... .
T Consensus 38 ~~~~~n~~~A~~aGl~v----G~Yh------f~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~~------~ 101 (196)
T cd06415 38 PKASAQVSSAIANGKMT----GGYH------FARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGSG------N 101 (196)
T ss_pred ccHHHHHHHHHHCCCee----EEEE------EEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCCC------C
Confidence 35677899999999855 4321 2222223222333344445556666653 36789994320 1
Q ss_pred CCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcChhhh-cccCceEEeeccc
Q psy10300 884 GPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKAL-SESLDWISVMTYD 943 (1490)
Q Consensus 884 ~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l-~~~vD~i~vmtYD 943 (1490)
........+..|+++|+++ |+...+- ....++....+...+ .++-..+.|-.|.
T Consensus 102 ~~~~~~~~~~~f~~~v~~~----G~~~~iY--t~~~~~~~~~~~~~~~~~~~~~lWiA~Y~ 156 (196)
T cd06415 102 SKAANTSAILAFMDTIKDA----GYKPMLY--SYKPLLLNNVDYSQIIAKYPNSLWVAAYP 156 (196)
T ss_pred CHHHHHHHHHHHHHHHHHh----CCCcEEE--ecHHHHHhccCHHHHHhhCCCCeEEEcCC
Confidence 1112224456677777642 4433333 233334333444443 2233346666663
No 188
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=32.57 E-value=1.3e+02 Score=36.99 Aligned_cols=69 Identities=16% Similarity=0.257 Sum_probs=43.9
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchh----hHHHHHHHHHHhcCCCCcEEEEEe
Q psy10300 1235 VNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQ----GFADLIKELRAAFNPHDLLLSAAV 1307 (1490)
Q Consensus 1235 ~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~----~~~~ll~eLr~~l~~~~~~ls~av 1307 (1490)
+++++.|+-+.+.+.++++++|+|.|-+|+....... +.....+... .+..|+++||+++.. +++-...
T Consensus 162 ~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~--~~~~~~~~~~~~~~~~y~l~~~L~~~~P~--v~iE~Cs 234 (394)
T PF02065_consen 162 LSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEA--GSPSLPEGYHRYVLGLYRLLDRLRARFPD--VLIENCS 234 (394)
T ss_dssp TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS---SSTTS-GHHHHHHHHHHHHHHHHHHHTTT--SEEEE-B
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCC--cEEEecc
Confidence 5688999999999999999999999999998543210 1111112222 344588999988853 5555553
No 189
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=32.46 E-value=1.5e+02 Score=35.85 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEe---------eCCCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEEec
Q psy10300 217 RLNFISSVLEMFDMYKFDGLDLNV---------KDPALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTSP 286 (1490)
Q Consensus 217 r~~fi~siv~~l~~~~fDGvdldw---------e~p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~v~ 286 (1490)
.+.|++.+.. .++-|||||+|+= -.|...++. +-.+|+.+.|-+|. +.|+.+|++.... +.|.+-++
T Consensus 148 i~~f~~AA~r-A~~AGFDgVEIH~AhGYLi~qFlsp~tN~Rt-D~YGGSlENR~Rf~~EVv~aVr~~vg~~-~~vg~Rls 224 (363)
T COG1902 148 IEDFARAARR-AKEAGFDGVEIHGAHGYLLSQFLSPLTNKRT-DEYGGSLENRARFLLEVVDAVREAVGAD-FPVGVRLS 224 (363)
T ss_pred HHHHHHHHHH-HHHcCCCEEEEeeccchHHHHhcCCccCCCC-CccCCcHHHHHHHHHHHHHHHHHHhCCC-ceEEEEEC
Confidence 4456655554 4558999999982 224444432 34567777775553 4456666666553 45666666
Q ss_pred ccccccccccCh-------hhhccc--ceeeeeecccC
Q psy10300 287 GVIDRKTSLVDI-------SVVAPL--VDLILLKSFNN 315 (1490)
Q Consensus 287 ~~~~~~~~~yd~-------~~l~~~--vD~i~lmtyd~ 315 (1490)
+.......++++ +.|.+. +|||++..-+.
T Consensus 225 ~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 225 PDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccc
Confidence 544322224443 344444 68888866543
No 190
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=32.45 E-value=8e+02 Score=30.05 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCCcchhh-------hhcCHHHHHHH----HHHHHHHHHHcCCCeEEEeecCCC
Q psy10300 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSR-------LVNSATARQRF----IEHVVKFLLKYQFDGLDLDWEYPT 875 (1490)
Q Consensus 811 ~~i~~~k~~g~KvllSiGG~~~s~~~~f~~-------~~~~~~~r~~f----i~s~~~~l~~ygfDGvDiDwE~P~ 875 (1490)
+...++|++|+|+-+-...+..... .|.. -...+. -..| ..+|.++|.+||-|.|=||+.++.
T Consensus 132 el~~A~rk~Glk~G~Y~S~~DW~~p-~y~~~~~~~~~~~~~~~-~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 132 ELADAVRKRGLKFGLYHSLFDWFNP-LYAGPTSSDEDPDNWPR-FQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred HHHHHHHHcCCeEEEEcCHHHhCCC-ccccccccccccccchh-HHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 4567899999999887765443211 1110 011111 1233 689999999999999999988764
No 191
>PLN02411 12-oxophytodienoate reductase
Probab=32.44 E-value=1.3e+02 Score=36.97 Aligned_cols=68 Identities=15% Similarity=0.253 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEeecC---------CCCC-CCCCCCCCccchhhHH-HHHHHHHHhcCCCCcEEEEEeC
Q psy10300 1240 ARSKFIAHVVNFILEHNFDGLDLDWEY---------PKCW-QVDCKQGPASDKQGFA-DLIKELRAAFNPHDLLLSAAVS 1308 (1490)
Q Consensus 1240 ~r~~fi~si~~~l~~~g~DGIDIDwE~---------P~~~-~~~~~~~~~~d~~~~~-~ll~eLr~~l~~~~~~ls~av~ 1308 (1490)
-.+.|++.. ...++-|||||+|.--+ |... ..|-.+++.+++..|. ..|+++|++.++. + |.+-++
T Consensus 163 ii~~f~~AA-~rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d-~-vgvRiS 239 (391)
T PLN02411 163 VVEHYRQAA-LNAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGAD-R-VGVRVS 239 (391)
T ss_pred HHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCC-e-EEEEEc
Confidence 334555544 34456899999998653 3211 2233345556666665 4789999998764 4 777777
Q ss_pred CC
Q psy10300 1309 PS 1310 (1490)
Q Consensus 1309 ~~ 1310 (1490)
+.
T Consensus 240 ~~ 241 (391)
T PLN02411 240 PA 241 (391)
T ss_pred cc
Confidence 63
No 192
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=32.15 E-value=1.7e+02 Score=31.49 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCC
Q psy10300 805 FDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG 884 (1490)
Q Consensus 805 ~~~~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~ 884 (1490)
.+..+...++.+++.|++| |..- |+.. .+.+..++-++..++.+++ .-.-+-||+|.+.
T Consensus 37 ~D~~f~~n~~~a~~aGl~v----G~Yh------f~~~-~~~~~a~~eA~~f~~~~~~-~~~~~~lD~E~~~--------- 95 (177)
T cd06523 37 VDLKYKNNIKEFKKRGIPF----GVYA------FARG-TSTADAKAEARDFYNRANK-KPTFYVLDVEVTS--------- 95 (177)
T ss_pred cCHHHHHHHHHHHHcCCCe----EEEE------Eecc-CCHHHHHHHHHHHHHHhcC-CCceEEEeeccCC---------
Confidence 4456788999999999865 3322 1111 1222223334444444544 2334789999543
Q ss_pred CCchhhhHHHHHHHHHHH
Q psy10300 885 PDSDKESFGLFVRELHQA 902 (1490)
Q Consensus 885 ~~~d~~~~~~ll~eLr~~ 902 (1490)
..+-.....+|+++++++
T Consensus 96 ~~~~~~~~~~f~~~v~~~ 113 (177)
T cd06523 96 MSDMNAGVQAFISELRRL 113 (177)
T ss_pred cchHHHHHHHHHHHHHHc
Confidence 122234456677777654
No 193
>PRK12568 glycogen branching enzyme; Provisional
Probab=32.09 E-value=1.3e+02 Score=39.90 Aligned_cols=64 Identities=19% Similarity=0.294 Sum_probs=42.2
Q ss_pred hcCHHHHHHHHHHHHHHHHhcCCceeEEEe-------eCCCCCCCC-CccccchhhhHHH--HHHHHHHHHHHHhhcC
Q psy10300 211 TSDRESRLNFISSVLEMFDMYKFDGLDLNV-------KDPALNDED-DDDLESIANERSD--FSTFIQELSSTLRRNN 278 (1490)
Q Consensus 211 ~~~~~~r~~fi~siv~~l~~~~fDGvdldw-------e~p~~~~~~-~~~~~~~~~d~~~--f~~ll~eLr~~~~~~~ 278 (1490)
..++..|+-+++++.-||+++++||+-+|= .|-...... +...+ .++| =+.||++|++.++...
T Consensus 380 ~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~~g----g~en~ea~~Fl~~ln~~v~~~~ 453 (730)
T PRK12568 380 YGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNAHG----GRENLEAVAFLRQLNREIASQF 453 (730)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccccC----CccChHHHHHHHHHHHHHHHHC
Confidence 356788999999999999999999999992 221110000 00001 1222 3679999999998764
No 194
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=31.79 E-value=91 Score=37.34 Aligned_cols=77 Identities=14% Similarity=0.230 Sum_probs=44.1
Q ss_pred CCceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHH
Q psy10300 195 PELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTL 274 (1490)
Q Consensus 195 p~lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~ 274 (1490)
....+.+.|+|. ++ ..|++ ++..+++.|||||||+.--|....+..........+.+...++|+.+|++.
T Consensus 63 ~e~p~~vQl~g~------~p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v 132 (333)
T PRK11815 63 EEHPVALQLGGS------DP---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV 132 (333)
T ss_pred CCCcEEEEEeCC------CH---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc
Confidence 346788888772 32 22333 345667889999999988775433211111122335556666677776665
Q ss_pred hhcCcEEEEE
Q psy10300 275 RRNNYQLTLT 284 (1490)
Q Consensus 275 ~~~~~~ls~~ 284 (1490)
++.|++-
T Consensus 133 ---~~pVsvK 139 (333)
T PRK11815 133 ---SIPVTVK 139 (333)
T ss_pred ---CCceEEE
Confidence 3445553
No 195
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=31.66 E-value=1e+02 Score=36.73 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=46.2
Q ss_pred HHHHHHHHhcCCcEEEEEEc----------------Cc--CCCCC----------cchhhhhcCHHHHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIG----------------GW--NDSAG----------NKYSRLVNSQQARSKFIAHVVNFIL 1253 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiG----------------G~--~~s~~----------~~f~~~~~~~~~r~~fi~si~~~l~ 1253 (1490)
..+.|+.||++|+||++.|- |. ....+ ..+-. +.+++.|+-|.+.+.+.+.
T Consensus 68 p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~~~ 146 (319)
T cd06591 68 PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYD-ATNPEAREYYWKQLKKNYY 146 (319)
T ss_pred HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccC-CCCHHHHHHHHHHHHHHhh
Confidence 35678899999999998761 10 00000 01111 4588899999999999999
Q ss_pred HcCCCeEEEeecCCC
Q psy10300 1254 EHNFDGLDLDWEYPK 1268 (1490)
Q Consensus 1254 ~~g~DGIDIDwE~P~ 1268 (1490)
++|+||+=+|+--|.
T Consensus 147 ~~Gvdg~w~D~~Ep~ 161 (319)
T cd06591 147 DKGVDAWWLDAAEPE 161 (319)
T ss_pred cCCCcEEEecCCCCC
Confidence 999999999996443
No 196
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=31.35 E-value=4.1e+02 Score=28.36 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=34.1
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHH----HHHHHHHHHHHc-CCCeEEEeecC
Q psy10300 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQR----FIEHVVKFLLKY-QFDGLDLDWEY 873 (1490)
Q Consensus 811 ~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~----fi~s~~~~l~~y-gfDGvDiDwE~ 873 (1490)
..+.++.+.|+||++.++-+. .-|.. .+.+.... .++.+.+.-..| .|.|-=|-.|.
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~----~~w~~--~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~ 130 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDP----DYWDQ--GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEI 130 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCc----hhhhc--cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Confidence 456777788999999998532 12221 34333333 444444422222 29999999994
No 197
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=31.22 E-value=92 Score=36.90 Aligned_cols=102 Identities=9% Similarity=-0.018 Sum_probs=55.5
Q ss_pred ceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccc--hhhhHHHHHHHHHHHHHHH
Q psy10300 197 LKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLES--IANERSDFSTFIQELSSTL 274 (1490)
Q Consensus 197 lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~--~~~d~~~f~~ll~eLr~~~ 274 (1490)
..+.+.|.|. ++ ..|++.+. .+++.|||||||+.--|...-.. -..| ...+.+...++++++|+++
T Consensus 63 ~p~~vQl~g~------~p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~--~g~Gs~Ll~~~~~~~eiv~avr~~~ 130 (312)
T PRK10550 63 TLVRIQLLGQ------YP---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNG--SGGGATLLKDPELIYQGAKAMREAV 130 (312)
T ss_pred CcEEEEeccC------CH---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhc--CCCchHhhcCHHHHHHHHHHHHHhc
Confidence 5577777662 33 23444333 44667999999998877521100 0112 2345666777777777766
Q ss_pred hhcCcEEEEEecccccccccccChhhhc-c-cceeeeee
Q psy10300 275 RRNNYQLTLTSPGVIDRKTSLVDISVVA-P-LVDLILLK 311 (1490)
Q Consensus 275 ~~~~~~ls~~v~~~~~~~~~~yd~~~l~-~-~vD~i~lm 311 (1490)
.. ++.|++-+.......+...++..+. + -+|+|.|.
T Consensus 131 ~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 131 PA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred CC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 32 3567776654322112222333332 2 28888774
No 198
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.89 E-value=1.5e+02 Score=32.61 Aligned_cols=66 Identities=17% Similarity=0.252 Sum_probs=44.5
Q ss_pred HHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcChhhhcccC
Q psy10300 855 VVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESL 934 (1490)
Q Consensus 855 ~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~~~~l~~~v 934 (1490)
.++.+.+.|.|-|-|.+| .......+++.+|+. |....+|+.|..... .+..+...+
T Consensus 72 ~i~~~~~~g~~~i~~H~E---------------~~~~~~~~i~~ik~~----g~k~GialnP~T~~~----~~~~~l~~v 128 (201)
T PF00834_consen 72 YIEEFAEAGADYITFHAE---------------ATEDPKETIKYIKEA----GIKAGIALNPETPVE----ELEPYLDQV 128 (201)
T ss_dssp HHHHHHHHT-SEEEEEGG---------------GTTTHHHHHHHHHHT----TSEEEEEE-TTS-GG----GGTTTGCCS
T ss_pred HHHHHHhcCCCEEEEccc---------------chhCHHHHHHHHHHh----CCCEEEEEECCCCch----HHHHHhhhc
Confidence 344456779999999999 112345667777753 788889988875432 356677789
Q ss_pred ceEEeeccc
Q psy10300 935 DWISVMTYD 943 (1490)
Q Consensus 935 D~i~vmtYD 943 (1490)
|+|.+|+-+
T Consensus 129 D~VlvMsV~ 137 (201)
T PF00834_consen 129 DMVLVMSVE 137 (201)
T ss_dssp SEEEEESS-
T ss_pred CEEEEEEec
Confidence 999999987
No 199
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.84 E-value=1.2e+02 Score=35.92 Aligned_cols=65 Identities=14% Similarity=0.107 Sum_probs=45.2
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCC------------------CCC------------cchhhhhcCHHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWND------------------SAG------------NKYSRLVNSQQARSKFIAHVVNF 1251 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~------------------s~~------------~~f~~~~~~~~~r~~fi~si~~~ 1251 (1490)
..+.++.||++|+||++.|-=.-. ..+ ..+-. +.++++|+=|.+.+.+.
T Consensus 75 p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~D-ftnp~a~~ww~~~~~~~ 153 (317)
T cd06599 75 PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVD-FTNPEGREWWKEGVKEA 153 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeec-CCChHHHHHHHHHHHHH
Confidence 457788999999999986521000 000 00111 35889999888888899
Q ss_pred HHHcCCCeEEEeecCC
Q psy10300 1252 ILEHNFDGLDLDWEYP 1267 (1490)
Q Consensus 1252 l~~~g~DGIDIDwE~P 1267 (1490)
+.+.|+||+=+|+--|
T Consensus 154 ~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 154 LLDLGIDSTWNDNNEY 169 (317)
T ss_pred HhcCCCcEEEecCCCC
Confidence 9999999999998544
No 200
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=30.40 E-value=1.7e+02 Score=29.91 Aligned_cols=58 Identities=17% Similarity=0.279 Sum_probs=38.0
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhc-CHHHHHHHHHHHHHHHHHcCCCeEEE
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVN-SQQARSKFIAHVVNFILEHNFDGLDL 1262 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~-~~~~r~~fi~si~~~l~~~g~DGIDI 1262 (1490)
.|.-.+..+++.|+++++-|-=-+ ..|..-+. +.+.|+.+.+.|...++++||.=+|+
T Consensus 37 Dl~l~L~~~k~~g~~~lfVi~PvN----g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 37 DLQLLLDVCKELGIDVLFVIQPVN----GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHTT-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHcCCceEEEecCCc----HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 344567788999999998774322 23433333 78999999999999999999966666
No 201
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=30.35 E-value=3.9e+02 Score=31.39 Aligned_cols=107 Identities=18% Similarity=0.210 Sum_probs=60.6
Q ss_pred HHHHHHHHHh-CCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHc--CCCeEEEeecCCCCCCCCCCCCC
Q psy10300 809 FYERVVTLKK-KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY--QFDGLDLDWEYPTCWQVNCDAGP 885 (1490)
Q Consensus 809 ~~~~i~~~k~-~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~y--gfDGvDiDwE~P~~~~~~~~~~~ 885 (1490)
+.+.+...+. .+..++++|.|.+ . +.++ .+++.+++. ++|+|||++--|...+.+.. .
T Consensus 78 ~~~~~~~~~~~~~~pl~~qi~g~~-------------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~--l 138 (300)
T TIGR01037 78 FLEELKPVREEFPTPLIASVYGSS-------------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIA--I 138 (300)
T ss_pred HHHHHHHHhccCCCcEEEEeecCC-------------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCccc--c
Confidence 3444544333 3678999998742 1 1233 344444543 39999999998864221111 1
Q ss_pred CchhhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcChh-hh-cccCceEEee
Q psy10300 886 DSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVK-AL-SESLDWISVM 940 (1490)
Q Consensus 886 ~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~~~-~l-~~~vD~i~vm 940 (1490)
-.+.+....+++++|++. ++-|++-+.+..... ..+. .+ ..-+|.|.|.
T Consensus 139 ~~~~~~~~eiv~~vr~~~---~~pv~vKi~~~~~~~---~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 139 GQDPELSADVVKAVKDKT---DVPVFAKLSPNVTDI---TEIAKAAEEAGADGLTLI 189 (300)
T ss_pred ccCHHHHHHHHHHHHHhc---CCCEEEECCCChhhH---HHHHHHHHHcCCCEEEEE
Confidence 235567788899998876 356666665432211 1121 22 2237999874
No 202
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=30.31 E-value=1.3e+02 Score=32.66 Aligned_cols=6 Identities=17% Similarity=0.484 Sum_probs=2.5
Q ss_pred eeCCCC
Q psy10300 641 ASCSPG 646 (1490)
Q Consensus 641 ~~Cp~G 646 (1490)
++|-+.
T Consensus 78 ~~C~~~ 83 (186)
T PF05283_consen 78 MECKGE 83 (186)
T ss_pred eecCCC
Confidence 444433
No 203
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=30.18 E-value=1.8e+02 Score=38.21 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCC-----------------CCCCc----------hhhhHHHHH
Q psy10300 844 SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCD-----------------AGPDS----------DKESFGLFV 896 (1490)
Q Consensus 844 ~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~-----------------~~~~~----------d~~~~~~ll 896 (1490)
+++.|+...+-..++.+.|.||||-||=+---..-.+.+ ....+ ....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 566666655556666666899999998552110000000 00000 112356777
Q ss_pred HHHHHHhCCC---------CceEEEEECCChhhHhhhcChhhhcccCceEEeeccccCCCCCCCCCCCCCCCCCCCCCcc
Q psy10300 897 RELHQAFKPH---------GLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFF 967 (1490)
Q Consensus 897 ~eLr~~l~~~---------~~~ls~a~~~~~~~~~~~~~~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~~~~~~~~ 967 (1490)
.||++..+.. +++-...+.|....+- +-++....+..||+-+|++=|..+ ...+.+
T Consensus 519 ~~l~~~v~~~~~~~~~tarni~a~~~l~p~~e~w~-aQ~l~~~~~~yD~~a~mampyme~---~~~~~~----------- 583 (671)
T PRK14582 519 LELSARVKAIRGPQVKTARNIFALPVIQPESEAWF-AQNLDDFLKSYDWTAPMAMPLMEG---VAEKSS----------- 583 (671)
T ss_pred HHHHHHHHhhcCccceeeccccccccCChhHHHHH-HhHHHHHHhhcchhhhhcchhhhc---cCcccH-----------
Confidence 7887776541 1122222233332222 226788888999999999654432 000000
Q ss_pred ccCHHHHHHHHHHcCCCCCCeEEEeecccccee
Q psy10300 968 YFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFS 1000 (1490)
Q Consensus 968 ~~~~~~~v~~~~~~G~p~~KlvlGlp~yG~~~~ 1000 (1490)
.-....-++...+.-...+|+|+-+.+ ++|.
T Consensus 584 ~~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 584 DAWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 012333344333343467999999975 4564
No 204
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=29.99 E-value=1.2e+02 Score=36.10 Aligned_cols=66 Identities=18% Similarity=0.209 Sum_probs=45.2
Q ss_pred HHHHHHHHhCCCeEEEEEe----------------CC--CCCCCcc-------hh--hhhcCHHHHHHHHHHHHHHHHHc
Q psy10300 810 YERVVTLKKKGVKVSLAIG----------------GW--NDSLGGK-------YS--RLVNSATARQRFIEHVVKFLLKY 862 (1490)
Q Consensus 810 ~~~i~~~k~~g~KvllSiG----------------G~--~~s~~~~-------f~--~~~~~~~~r~~fi~s~~~~l~~y 862 (1490)
.+.|+.||++|+||++.+- |. ....+.. .. -=+.++++|+-|.+.+.+.+.++
T Consensus 69 ~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~ 148 (319)
T cd06591 69 KAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDK 148 (319)
T ss_pred HHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcC
Confidence 4568889999999998761 10 0000000 00 11367888888999999999999
Q ss_pred CCCeEEEeecCCC
Q psy10300 863 QFDGLDLDWEYPT 875 (1490)
Q Consensus 863 gfDGvDiDwE~P~ 875 (1490)
|+||+=+|+--|.
T Consensus 149 Gvdg~w~D~~Ep~ 161 (319)
T cd06591 149 GVDAWWLDAAEPE 161 (319)
T ss_pred CCcEEEecCCCCC
Confidence 9999999987554
No 205
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.68 E-value=6.4e+02 Score=28.59 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEe
Q psy10300 809 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLD 870 (1490)
Q Consensus 809 ~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiD 870 (1490)
+.+.|.-+|++|++|. .||| .|..++ .+..++..++.+++.|||.|+|.
T Consensus 43 l~eki~la~~~~V~v~--~GGt------l~E~~~-----~q~~~~~Yl~~~k~lGf~~IEiS 91 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVY--PGGT------LFEIAH-----SKGKFDEYLNECDELGFEAVEIS 91 (237)
T ss_pred HHHHHHHHHHcCCeEe--CCcc------HHHHHH-----HhhhHHHHHHHHHHcCCCEEEEc
Confidence 4556777888888775 4564 233332 33567778889999999999985
No 206
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=29.36 E-value=2.3e+02 Score=31.12 Aligned_cols=18 Identities=17% Similarity=0.183 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHhCCCeE
Q psy10300 806 DNRFYERVVTLKKKGVKV 823 (1490)
Q Consensus 806 ~~~~~~~i~~~k~~g~Kv 823 (1490)
+..+...++.+++.|+++
T Consensus 38 D~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 38 NPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred ChhHHHHHHHHHHcCCce
Confidence 345678899999999855
No 207
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=29.22 E-value=3e+02 Score=31.17 Aligned_cols=106 Identities=13% Similarity=0.185 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCC--CCCCCCCcc
Q psy10300 1203 YEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQ--VDCKQGPAS 1280 (1490)
Q Consensus 1203 ~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~--~~~~~~~~~ 1280 (1490)
.+.+..++..+..+.+.|.|.+- + . ...++..+.++ .|+|||+..-|...- .++...--.
T Consensus 62 ~~~~~~~~~~~~p~~vqi~g~~~-------------~---~-~~~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~ 123 (233)
T cd02911 62 EGEIKALKDSNVLVGVNVRSSSL-------------E---P-LLNAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLK 123 (233)
T ss_pred HHHHHHhhccCCeEEEEecCCCH-------------H---H-HHHHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcC
Confidence 34556667678899999987321 1 1 12355566665 599999999765210 011111123
Q ss_pred chhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCChhh-h-cccCcEEEE
Q psy10300 1281 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPV-M-SENLDWISV 1332 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~-l-~~~vD~i~v 1332 (1490)
+.+....+++++|+. +.-+++-+.+... ....++.. + ...+|.|++
T Consensus 124 ~p~~l~eiv~avr~~----~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv 171 (233)
T cd02911 124 DPERLSEFIKALKET----GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHV 171 (233)
T ss_pred CHHHHHHHHHHHHhc----CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEE
Confidence 566778888888863 5667777765421 11112211 2 234888876
No 208
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=29.19 E-value=3.8e+02 Score=31.47 Aligned_cols=151 Identities=20% Similarity=0.213 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCCCCcc
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQVDCKQGPAS 1280 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g-~DGIDIDwE~P~~~~~~~~~~~~~ 1280 (1490)
....+..+++.|..++..+-.+...++ .-+.+.-+.+.+.|++-|++.+ +|||-|+.=- ..+...
T Consensus 47 ~~g~~~~a~~~g~e~vp~~~a~A~P~G------~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHG--------Amv~e~ 112 (292)
T PF07364_consen 47 IGGFLDAAEAQGWEVVPLLWAAAEPGG------PVTREAYERLRDEILDRLRAAGPLDGVLLDLHG--------AMVAEG 112 (292)
T ss_dssp HHHHHHHHHHTT-EEEEEEEEEE-SEE-------B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S-----------BSS
T ss_pred hHHHHHHHHHCCCEEEeeEeeeecCCC------cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccC--------cEeecC
Confidence 345567777889888877744332222 3466778889999999999986 9999999861 112222
Q ss_pred chhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10300 1281 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1360 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~ 1360 (1490)
..+.=..||+.+|+.+++ +..|.+++-+.... -+.+.+.+|.+. +|-.+-+ .-++. .
T Consensus 113 ~~D~EG~Ll~rvR~~vGp-~vpI~~tlDlHaNv------s~~mv~~ad~~~--~yrtyPH--------~D~~e------t 169 (292)
T PF07364_consen 113 YDDGEGDLLRRVRAIVGP-DVPIAATLDLHANV------SPRMVEAADIIV--GYRTYPH--------IDMYE------T 169 (292)
T ss_dssp -SSHHHHHHHHHHHHHTT-TSEEEEEE-TT----------HHHHHH-SEEE--E---SS-----------HHH------H
T ss_pred CCCchHHHHHHHHHHhCC-CCeEEEEeCCCCCc------cHHHHHhCCEEE--EcCCCCc--------cCHHH------H
Confidence 222234599999999976 35666655433221 246777888775 3432211 11110 0
Q ss_pred CcCHHHHHHHHHHcCCCCCcEEEEeeccc
Q psy10300 1361 TFNANYSLHYWVSHGADRKKVIFGMPMYG 1389 (1490)
Q Consensus 1361 ~~~i~~~v~~~~~~g~p~~KlvlGlp~YG 1389 (1490)
..-.-..+..++..++.|-+...-+|+-.
T Consensus 170 g~~aa~ll~~~l~g~~rp~~a~~~~P~l~ 198 (292)
T PF07364_consen 170 GERAARLLLRALRGEIRPVMALRRLPMLL 198 (292)
T ss_dssp HHHHHHHHHHTTT-SS--EEEEEEE-B--
T ss_pred HHHHHHHHHHHHcCCCCceEEEecCCeEc
Confidence 00111223333445677777777777654
No 209
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=28.78 E-value=4.2e+02 Score=31.12 Aligned_cols=87 Identities=16% Similarity=0.256 Sum_probs=54.0
Q ss_pred HHHHHHHHHhc----CCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHc---CCCeEEEeecCCCCCCCC
Q psy10300 1201 KFYEKVTALKK----KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEH---NFDGLDLDWEYPKCWQVD 1273 (1490)
Q Consensus 1201 ~~~~~i~~~k~----~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~---g~DGIDIDwE~P~~~~~~ 1273 (1490)
.+.+.++.+++ .+..|+++|+|. . +.+++.+.. +.+. +.|+|||+.-.|...+
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~-~----------------~~~~~~~~~-~~~~~~~~ad~ielN~sCPn~~~-- 134 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS-A----------------EDIAAMYKK-IAAHQKQFPLAMELNLSCPNVPG-- 134 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC-H----------------HHHHHHHHH-HHhhccccccEEEEECCCCCCCC--
Confidence 34455554443 367899999873 1 223333333 3443 6999999999887311
Q ss_pred CCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCCh
Q psy10300 1274 CKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSK 1311 (1490)
Q Consensus 1274 ~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~ 1311 (1490)
......+.+.+..+++.+|+... .-|++-++|..
T Consensus 135 -~~~~~~~~~~~~~i~~~v~~~~~---iPv~vKl~p~~ 168 (294)
T cd04741 135 -KPPPAYDFDATLEYLTAVKAAYS---IPVGVKTPPYT 168 (294)
T ss_pred -cccccCCHHHHHHHHHHHHHhcC---CCEEEEeCCCC
Confidence 11123467788899999998873 45777777753
No 210
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=28.75 E-value=1.8e+02 Score=31.77 Aligned_cols=19 Identities=16% Similarity=0.326 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHhCCCeE
Q psy10300 805 FDNRFYERVVTLKKKGVKV 823 (1490)
Q Consensus 805 ~~~~~~~~i~~~k~~g~Kv 823 (1490)
.+..+...++.++++|+++
T Consensus 37 ~D~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 37 FDPNSVTNIKNARAAGLST 55 (196)
T ss_pred cChHHHHHHHHHHHcCCcc
Confidence 3457788999999999888
No 211
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=28.54 E-value=2e+02 Score=33.03 Aligned_cols=97 Identities=11% Similarity=0.100 Sum_probs=58.3
Q ss_pred hhHHHhhhhhcCCCceEE-EEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHH
Q psy10300 183 GYKSFLGLKEANPELKVY-LAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERS 261 (1490)
Q Consensus 183 ~~~~~~~LK~~np~lKvl-lsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~ 261 (1490)
.++.+.++|+.++++.++ ++. .|+-.+. =++..++.+++.|+||+-|.-+ | .
T Consensus 74 ~~~~v~~ir~~~~~~plv~m~Y--------~Npi~~~-G~e~f~~~~~~aGvdgviipDl-p-------------~---- 126 (256)
T TIGR00262 74 CFELLKKVRQKHPNIPIGLLTY--------YNLIFRK-GVEEFYAKCKEVGVDGVLVADL-P-------------L---- 126 (256)
T ss_pred HHHHHHHHHhcCCCCCEEEEEe--------ccHHhhh-hHHHHHHHHHHcCCCEEEECCC-C-------------h----
Confidence 455566777665666644 332 2222220 1123345567889999998643 1 1
Q ss_pred HHHHHHHHHHHHHhhcCcEEEEEecccccccccccChhhhcccce-eeeeecc
Q psy10300 262 DFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVD-LILLKSF 313 (1490)
Q Consensus 262 ~f~~ll~eLr~~~~~~~~~ls~~v~~~~~~~~~~yd~~~l~~~vD-~i~lmty 313 (1490)
.-+.++.+.+++.|+.+...+.|... --.+..+.+.+| ||.+|+.
T Consensus 127 ---ee~~~~~~~~~~~gl~~i~lv~P~T~----~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 127 ---EESGDLVEAAKKHGVKPIFLVAPNAD----DERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred ---HHHHHHHHHHHHCCCcEEEEECCCCC----HHHHHHHHHhCCCCEEEEEC
Confidence 12456777778888877766665543 123567888888 9999985
No 212
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=28.12 E-value=1.9e+02 Score=34.83 Aligned_cols=81 Identities=16% Similarity=0.209 Sum_probs=48.3
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcC--------HH-----HHHHHHHHHHHHHHHcCCCeEEEeecCCCCC
Q psy10300 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNS--------AT-----ARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW 877 (1490)
Q Consensus 811 ~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~--------~~-----~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~ 877 (1490)
+.+.+||++|+|+.|-...+..... .+..-... .. -.+.+..++.+++.+|..|.|=||.-++.
T Consensus 142 El~~A~rk~Glk~G~Y~S~~dw~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~-- 218 (346)
T PF01120_consen 142 ELADACRKYGLKFGLYYSPWDWHHP-DYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPD-- 218 (346)
T ss_dssp HHHHHHHHTT-EEEEEEESSSCCCT-TTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSC--
T ss_pred HHHHHHHHcCCeEEEEecchHhcCc-ccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCc--
Confidence 4567899999999887766542211 11111110 11 12245679999999999999999988653
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHH
Q psy10300 878 QVNCDAGPDSDKESFGLFVRELHQA 902 (1490)
Q Consensus 878 ~~~~~~~~~~d~~~~~~ll~eLr~~ 902 (1490)
..+...+..+...+|+.
T Consensus 219 --------~~~~~~~~~~~~~i~~~ 235 (346)
T PF01120_consen 219 --------PDEDWDSAELYNWIRKL 235 (346)
T ss_dssp --------CCTHHHHHHHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHHh
Confidence 22333445566666554
No 213
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=28.08 E-value=1.9e+02 Score=33.50 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q psy10300 808 RFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 808 ~~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE 872 (1490)
.+.+.++..|++|++|+|=.--.++. .... -++. .+.+.+.+++.|+.||-+||=
T Consensus 74 dl~elv~Ya~~KgVgi~lw~~~~~~~---~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~ 128 (273)
T PF10566_consen 74 DLPELVDYAKEKGVGIWLWYHSETGG---NVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFM 128 (273)
T ss_dssp -HHHHHHHHHHTT-EEEEEEECCHTT---BHHH------HHCC-HHHHHHHHHHCTEEEEEEE--
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcch---hhHh------HHHH-HHHHHHHHHHcCCCEEeeCcC
Confidence 34567888999999999855432211 1111 1222 377888999999999999998
No 214
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=27.95 E-value=2.6e+02 Score=30.48 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCCCCCCC
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD---GLDLDWEYPKCWQVDCK 1275 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~D---GIDIDwE~P~~~~~~~~ 1275 (1490)
+..+...++.+++.|+++ |... |....+..+.+ +=++..++.+++++++ -+-||+|...
T Consensus 41 D~~~~~n~~~A~~aGl~v----G~Yh------f~~~~~~~~a~-~eA~~f~~~~~~~~~~~~~~~~lD~E~~~------- 102 (192)
T cd06522 41 NPYAASQIANAKAAGLKV----SAYH------YAHYTSAADAQ-AEARYFANTAKSLGLSKNTVMVADMEDSS------- 102 (192)
T ss_pred ChHHHHHHHHHHHCCCee----EEEE------EEecCChHHHH-HHHHHHHHHHHHcCCCCCCceEEEeecCC-------
Confidence 456788899999999864 4322 33333222222 2233344456777765 2578999432
Q ss_pred CCCccchhhHHHHHHHHHHh
Q psy10300 1276 QGPASDKQGFADLIKELRAA 1295 (1490)
Q Consensus 1276 ~~~~~d~~~~~~ll~eLr~~ 1295 (1490)
....-......|+++++++
T Consensus 103 -~~~~~~~~~~~F~~~v~~~ 121 (192)
T cd06522 103 -SSGNATANVNAFWQTMKAA 121 (192)
T ss_pred -CcchHHHHHHHHHHHHHHc
Confidence 1122334456677777754
No 215
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=27.79 E-value=7.2e+02 Score=28.33 Aligned_cols=144 Identities=15% Similarity=0.168 Sum_probs=72.8
Q ss_pred HHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCcc
Q psy10300 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280 (1490)
Q Consensus 1201 ~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~ 1280 (1490)
-+.+.+..+|++|++|. .||| .|..+.. +.-++..++.+++.|||.|+|.=-. -.-
T Consensus 55 ~l~eki~l~~~~gV~v~--~GGt------l~E~a~~-----q~~~~~yl~~~k~lGf~~IEiSdGt-----------i~l 110 (244)
T PF02679_consen 55 ILKEKIDLAHSHGVYVY--PGGT------LFEVAYQ-----QGKFDEYLEECKELGFDAIEISDGT-----------IDL 110 (244)
T ss_dssp HHHHHHHHHHCTT-EEE--E-HH------HHHHHHH-----TT-HHHHHHHHHHCT-SEEEE--SS-----------S--
T ss_pred HHHHHHHHHHHcCCeEe--CCcH------HHHHHHh-----cChHHHHHHHHHHcCCCEEEecCCc-----------eeC
Confidence 36778888999998764 5774 2433332 4456778899999999999994331 122
Q ss_pred chhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCC--------hhhhcccCcEEEEeeccCCCCCCCCCCCCCCCC
Q psy10300 1281 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYD--------IPVMSENLDWISVMTYDYHGQWDKKTGHVAPMY 1352 (1490)
Q Consensus 1281 d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d--------~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~ 1352 (1490)
..+....+|+.++ ..|+.+..-+...........+ -..|..-+|+|.|-+=. .|-. .+|
T Consensus 111 ~~~~r~~~I~~~~----~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarE--------sG~~-Gi~ 177 (244)
T PF02679_consen 111 PEEERLRLIRKAK----EEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARE--------SGKG-GIY 177 (244)
T ss_dssp -HHHHHHHHHHHC----CTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TT--------T--S-TTB
T ss_pred CHHHHHHHHHHHH----HCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeec--------cCCC-Ccc
Confidence 3344444554443 5566666666543222211111 13455678999886622 2222 444
Q ss_pred CCCCCCCCCcCHHHHHHHHHHcCCCCCcEEEEeec
Q psy10300 1353 ALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPM 1387 (1490)
Q Consensus 1353 ~~~~~~~~~~~i~~~v~~~~~~g~p~~KlvlGlp~ 1387 (1490)
...+. --...+..++.. ++++||++=-|-
T Consensus 178 ~~~g~-----~r~d~v~~i~~~-~~~~~lifEAp~ 206 (244)
T PF02679_consen 178 DNDGE-----VRTDLVEKIIER-LGLEKLIFEAPQ 206 (244)
T ss_dssp -TTS------B-HHHHHHHHTT-S-GGGEEEE--S
T ss_pred CCCCC-----ccHHHHHHHHHh-CCHhHEEEeCCC
Confidence 32221 123445555555 999999966653
No 216
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=27.73 E-value=1.3e+02 Score=39.33 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCC---------------CCCCCC--CC--Cc--------cchhhHHHHH
Q psy10300 1237 SQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC---------------WQVDCK--QG--PA--------SDKQGFADLI 1289 (1490)
Q Consensus 1237 ~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~---------------~~~~~~--~~--~~--------~d~~~~~~ll 1289 (1490)
+++.|+...+-..++.+.|.||||-||=.---. ++.... .. .+ -....+..|-
T Consensus 439 ~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l~d~ed~s~~a~~~~~~~g~~~~~~~~~~~~~~~~~wt~~k~~~l~~f~ 518 (671)
T PRK14582 439 DDRVRAQVGMLYEDLAGHAAFDGILFHDDAVLSDYEDASAPAITAYQQAGFSGSLSEIRQNPEQFKQWTRFKSRALTDFT 518 (671)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEecccccccccccCCHHHHHHHHHcCCCcchhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 566665555555556666799999997652110 000000 00 00 0112345788
Q ss_pred HHHHHhcCCC---CcEE------EEEeCCChhhhhccCChhhhcccCcEEEEeeccCCCCCCCCCCCCCCCCCCCCCCCC
Q psy10300 1290 KELRAAFNPH---DLLL------SAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1360 (1490)
Q Consensus 1290 ~eLr~~l~~~---~~~l------s~av~~~~~~~~~~~d~~~l~~~vD~i~vmtYD~~g~w~~~~g~~spl~~~~~~~~~ 1360 (1490)
.+|++..++. .+.. ...+.|....+ -+.++..+.+..||+-||+.=|..+ . ....+
T Consensus 519 ~~l~~~v~~~~~~~~~tarni~a~~~l~p~~e~w-~aQ~l~~~~~~yD~~a~mampyme~---~-----------~~~~~ 583 (671)
T PRK14582 519 LELSARVKAIRGPQVKTARNIFALPVIQPESEAW-FAQNLDDFLKSYDWTAPMAMPLMEG---V-----------AEKSS 583 (671)
T ss_pred HHHHHHHHhhcCccceeeccccccccCChhHHHH-HHhHHHHHHhhcchhhhhcchhhhc---c-----------CcccH
Confidence 8888877642 1111 12222222211 2457888888999999999665543 0 00111
Q ss_pred CcCHHHHHHHHHHcCCCCCcEEEEeeccceeee
Q psy10300 1361 TFNANYSLHYWVSHGADRKKVIFGMPMYGQSFT 1393 (1490)
Q Consensus 1361 ~~~i~~~v~~~~~~g~p~~KlvlGlp~YG~~~~ 1393 (1490)
...+...++.+.+.-...+|+|+-|-.. .|+
T Consensus 584 ~~wl~~l~~~v~~~~~~~~k~vfelq~~--dw~ 614 (671)
T PRK14582 584 DAWLIQLVNQVKNIPGALDKTIFELQAR--DWQ 614 (671)
T ss_pred HHHHHHHHHHHHhcCCcccceEEEeecc--ccc
Confidence 2234455555554445679999888643 464
No 217
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=27.52 E-value=60 Score=37.07 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHHHHHHhhcCcEEEEE
Q psy10300 221 ISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLT 284 (1490)
Q Consensus 221 i~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eLr~~~~~~~~~ls~~ 284 (1490)
+..+++.+++.|||||+|.+.+. .-+++|++.++..|+.++..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~---------------------~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD---------------------WDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc---------------------CCHHHHHHHHHHcCCeEEEE
Confidence 55678888999999999965311 12578888888989877653
No 218
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.03 E-value=5.5e+02 Score=27.35 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=36.4
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHH-HcC----CCeEEEeecC
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFIL-EHN----FDGLDLDWEY 1266 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~-~~g----~DGIDIDwE~ 1266 (1490)
+...+..+.+.|+||+++++-+. ..|.. .+.+....+.+.|++-+. +|| |.|-=|-.|.
T Consensus 67 l~~~L~~A~~~Gmkv~~Gl~~~~----~~w~~--~~~~~~~~~~~~v~~el~~~yg~h~sf~GWYip~E~ 130 (166)
T PF14488_consen 67 LEMILDAADKYGMKVFVGLYFDP----DYWDQ--GDLDWEAERNKQVADELWQRYGHHPSFYGWYIPYEI 130 (166)
T ss_pred HHHHHHHHHHcCCEEEEeCCCCc----hhhhc--cCHHHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Confidence 44556777788999999998532 23432 444444344444444333 344 9999999994
No 219
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=26.86 E-value=5.6e+02 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.2
Q ss_pred HHHHHHHHcCCCeEEE
Q psy10300 854 HVVKFLLKYQFDGLDL 869 (1490)
Q Consensus 854 s~~~~l~~ygfDGvDi 869 (1490)
-++++|+..|+|-.-|
T Consensus 192 P~i~amN~LGyDA~tL 207 (814)
T PRK11907 192 PMYAALEALGFDAGTL 207 (814)
T ss_pred HHHHHHhccCCCEEEe
Confidence 5889999999997754
No 220
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=26.85 E-value=3.5e+02 Score=30.61 Aligned_cols=85 Identities=14% Similarity=0.222 Sum_probs=51.4
Q ss_pred HHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCC--CCCCCCCCCch
Q psy10300 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW--QVNCDAGPDSD 888 (1490)
Q Consensus 811 ~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~--~~~~~~~~~~d 888 (1490)
+.+..++..+..+.+.|.|.+ + +.++ .++..+.++ .|+|||+..-|... ..+....--.+
T Consensus 63 ~~~~~~~~~~~p~~vqi~g~~-------------~---~~~~-~aa~~~~~~-~~~ielN~gCP~~~v~~~g~G~~Ll~~ 124 (233)
T cd02911 63 GEIKALKDSNVLVGVNVRSSS-------------L---EPLL-NAAALVAKN-AAILEINAHCRQPEMVEAGAGEALLKD 124 (233)
T ss_pred HHHHHhhccCCeEEEEecCCC-------------H---HHHH-HHHHHHhhc-CCEEEEECCCCcHHHhcCCcchHHcCC
Confidence 456667767889999998743 1 1122 344455665 59999999987521 00000001234
Q ss_pred hhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 889 KESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 889 ~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
.+....+++++|+. ++-+++-+.+.
T Consensus 125 p~~l~eiv~avr~~----~~pVsvKir~g 149 (233)
T cd02911 125 PERLSEFIKALKET----GVPVSVKIRAG 149 (233)
T ss_pred HHHHHHHHHHHHhc----CCCEEEEEcCC
Confidence 56678888888863 46677766554
No 221
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=26.83 E-value=98 Score=35.36 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=37.9
Q ss_pred hhhhhHHHhhhhhcCCCceEEEEecc-ch-------hhhhcCHHHHHHHHHHHHHHHHhcCCceeE
Q psy10300 180 IKGGYKSFLGLKEANPELKVYLAVKS-NF-------VSITSDRESRLNFISSVLEMFDMYKFDGLD 237 (1490)
Q Consensus 180 ~~~~~~~~~~LK~~np~lKvllsvGg-~f-------s~~~~~~~~r~~fi~siv~~l~~~~fDGvd 237 (1490)
...+-+.+..||+.||++||++.|.- .. .-+++|..+...+...+=++++.+ |.++
T Consensus 151 ~~~l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~~d~~~an~~SKs~Lr~a~~~l~~~~--~~v~ 214 (251)
T PF08885_consen 151 LEDLEAIIDLLRSINPDIKIILTVSPVRLIATFRDRDGLVANQYSKSTLRAAAHELVRAF--DDVD 214 (251)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeccchhhcccccccchhhhhhhHHHHHHHHHHHHhcC--CCce
Confidence 34455567779999999999999987 22 336666666666666666666643 5443
No 222
>KOG3111|consensus
Probab=26.83 E-value=1.7e+02 Score=31.56 Aligned_cols=75 Identities=21% Similarity=0.329 Sum_probs=52.8
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCCh
Q psy10300 839 SRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSK 918 (1490)
Q Consensus 839 ~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~ 918 (1490)
+-|+.++.. .+.-+.+-|.+.+-|.+| ..++ ...+++.+| ++|...-+|+-|..
T Consensus 70 HmMV~~Peq-------~V~~~a~agas~~tfH~E------------~~q~---~~~lv~~ir----~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 70 HMMVENPEQ-------WVDQMAKAGASLFTFHYE------------ATQK---PAELVEKIR----EKGMKVGLALKPGT 123 (224)
T ss_pred EEeecCHHH-------HHHHHHhcCcceEEEEEe------------eccC---HHHHHHHHH----HcCCeeeEEeCCCC
Confidence 446667654 445556789999999999 1122 445555555 56889999998876
Q ss_pred hhHhhhcChhhhcccCceEEeeccc
Q psy10300 919 QVINAAYDVKALSESLDWISVMTYD 943 (1490)
Q Consensus 919 ~~~~~~~~~~~l~~~vD~i~vmtYD 943 (1490)
..- ++..+...+|++-||+-.
T Consensus 124 ~Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 124 PVE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred cHH----HHHHhhccccEEEEEEec
Confidence 532 455667789999999996
No 223
>PRK14705 glycogen branching enzyme; Provisional
Probab=26.61 E-value=1.7e+02 Score=41.08 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe-------CCC-----CC------CC-----cchhh---hhcCHHHHHHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG-------GWN-----DS------LG-----GKYSR---LVNSATARQRFIEHVVKFLL 860 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG-------G~~-----~s------~~-----~~f~~---~~~~~~~r~~fi~s~~~~l~ 860 (1490)
.+|...|.++|++|++|||=+= +|. +. .. ..|.. -..+++-|+-+++++.-+++
T Consensus 815 ~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~ 894 (1224)
T PRK14705 815 DEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLD 894 (1224)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999998531 110 00 00 00111 12567888889999999999
Q ss_pred HcCCCeEEEee
Q psy10300 861 KYQFDGLDLDW 871 (1490)
Q Consensus 861 ~ygfDGvDiDw 871 (1490)
+|++||+-||-
T Consensus 895 eyhiDGfR~Da 905 (1224)
T PRK14705 895 EFHIDGLRVDA 905 (1224)
T ss_pred HhCCCcEEEee
Confidence 99999999996
No 224
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=26.40 E-value=1.6e+02 Score=35.09 Aligned_cols=32 Identities=22% Similarity=0.122 Sum_probs=27.9
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEeecCC
Q psy10300 843 NSATARQRFIEHVVKFLLKYQFDGLDLDWEYP 874 (1490)
Q Consensus 843 ~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P 874 (1490)
.++++|+-|.+.+.+.+.+.|+||+=+|.--|
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 58889998988888999999999999998744
No 225
>PRK03995 hypothetical protein; Provisional
Probab=26.30 E-value=89 Score=35.97 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=20.5
Q ss_pred cCCceeEEEeeCCCCCCCCCccccchhhhHHHHHHHHHHH
Q psy10300 231 YKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQEL 270 (1490)
Q Consensus 231 ~~fDGvdldwe~p~~~~~~~~~~~~~~~d~~~f~~ll~eL 270 (1490)
-++|.+.|||.- ....+|+.+..++++|
T Consensus 233 ~~~~~~~id~K~------------~k~~~r~~i~~~le~~ 260 (267)
T PRK03995 233 PEIDRIVIDWKG------------VKSEDRERIIEFLEEL 260 (267)
T ss_pred CCCCEEEEecCC------------CCHHHHHHHHHHHHHC
Confidence 478999999982 2345787777777765
No 226
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=26.11 E-value=73 Score=36.32 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=31.2
Q ss_pred HHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEE
Q psy10300 1245 IAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAA 1306 (1490)
Q Consensus 1245 i~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a 1306 (1490)
+..+++.+++.|||||+|.+.+. .-++++++.+...|+.++..
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~~~-------------------~~~~~l~~~l~~~gl~v~~~ 58 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFPYD-------------------WDAEALKARLAAAGLEQVLF 58 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCCcc-------------------CCHHHHHHHHHHcCCeEEEE
Confidence 56688889999999999965311 12567777777778877654
No 227
>KOG1643|consensus
Probab=25.93 E-value=2.6e+02 Score=30.39 Aligned_cols=64 Identities=14% Similarity=0.283 Sum_probs=40.5
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCCCC
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQVD 1273 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g-~DGIDIDwE~P~~~~~~ 1273 (1490)
.-..+.++.+.+.|+||++.||.--... ..-...+-..+++..+.++-+ .++|+|-+| |. |..+
T Consensus 106 ~~i~~K~~~Al~eGl~ViaCIGE~leeR--------EaG~t~dVv~~Ql~aiad~v~~w~niviAYE-PV-WAIG 170 (247)
T KOG1643|consen 106 EFIADKTAHALAEGLKVIACIGETLEER--------EAGKTLDVVFRQLKAIADKVKDWSNIVIAYE-PV-WAIG 170 (247)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccHHhh--------hcCchHHHHHHHHHHHHHhcCCccceEEEee-ce-eeec
Confidence 3345667777788999999999632110 001122334566777777765 899999999 54 4443
No 228
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=25.72 E-value=1.6e+02 Score=38.64 Aligned_cols=66 Identities=23% Similarity=0.358 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhCCCeEEEEEe----------CCCCC----CCc---------ch--------hhhhcCHHHHHHHHHHH
Q psy10300 807 NRFYERVVTLKKKGVKVSLAIG----------GWNDS----LGG---------KY--------SRLVNSATARQRFIEHV 855 (1490)
Q Consensus 807 ~~~~~~i~~~k~~g~KvllSiG----------G~~~s----~~~---------~f--------~~~~~~~~~r~~fi~s~ 855 (1490)
.+|...|++||++|+.|||=|= |-+.+ ... .+ .--.+.+..|+-.+++|
T Consensus 265 ~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsL 344 (697)
T COG1523 265 KEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSL 344 (697)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHH
Confidence 4678889999999999998541 11111 000 11 11223577888899999
Q ss_pred HHHHHHcCCCeEEEeec
Q psy10300 856 VKFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 856 ~~~l~~ygfDGvDiDwE 872 (1490)
.-++++|++||+-||.=
T Consensus 345 rYWv~e~hVDGFRFDLa 361 (697)
T COG1523 345 RYWVEEYHVDGFRFDLA 361 (697)
T ss_pred HHHHHHhCCCceeecch
Confidence 99999999999999987
No 229
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=25.71 E-value=1.7e+02 Score=35.24 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=28.6
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCC
Q psy10300 842 VNSATARQRFIEHVVKFLLKYQFDGLDLDWEYP 874 (1490)
Q Consensus 842 ~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P 874 (1490)
+.++++|+-|.+.+.+++.++|+||+=+|+--|
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 468888999988888899999999999998744
No 230
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=25.59 E-value=2.8e+02 Score=33.25 Aligned_cols=77 Identities=13% Similarity=0.187 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhC-CCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCC
Q psy10300 808 RFYERVVTLKKK-GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 886 (1490)
Q Consensus 808 ~~~~~i~~~k~~-g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~ 886 (1490)
.+.+.+..++++ ++.|+++|+|.+. ..++ .++..+++.|+|+|+|++-.|... .+.. ..
T Consensus 88 ~~~~~i~~~~~~~~~pvi~sI~g~~~----------------~e~~-~~a~~~~~agad~ielN~scpp~~-~~~~--g~ 147 (334)
T PRK07565 88 EYLELIRRAKEAVDIPVIASLNGSSA----------------GGWV-DYARQIEQAGADALELNIYYLPTD-PDIS--GA 147 (334)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccCCH----------------HHHH-HHHHHHHHcCCCEEEEeCCCCCCC-CCCc--cc
Confidence 344555555544 6899999988321 1233 344456677999999999764321 1111 11
Q ss_pred chhhhHHHHHHHHHHHhC
Q psy10300 887 SDKESFGLFVRELHQAFK 904 (1490)
Q Consensus 887 ~d~~~~~~ll~eLr~~l~ 904 (1490)
...+.+..+++++|+..+
T Consensus 148 ~~~~~~~eil~~v~~~~~ 165 (334)
T PRK07565 148 EVEQRYLDILRAVKSAVS 165 (334)
T ss_pred cHHHHHHHHHHHHHhccC
Confidence 223457788888887753
No 231
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=25.58 E-value=1.7e+02 Score=34.82 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=47.4
Q ss_pred HhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCC--CchhhhHHH
Q psy10300 817 KKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGP--DSDKESFGL 894 (1490)
Q Consensus 817 k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~--~~d~~~~~~ 894 (1490)
+..+..+++.|+|.+. +.|++ .+..+++.|||||||..--|...-.+...|. -.+......
T Consensus 59 ~~~~~p~i~ql~g~~~----------------~~~~~-aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~e 121 (319)
T TIGR00737 59 AEDETPISVQLFGSDP----------------DTMAE-AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGK 121 (319)
T ss_pred CCccceEEEEEeCCCH----------------HHHHH-HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHH
Confidence 3447888999998531 22444 3335678899999999887742111212222 234556677
Q ss_pred HHHHHHHHhCCCCceEEEEE
Q psy10300 895 FVRELHQAFKPHGLLLSAAV 914 (1490)
Q Consensus 895 ll~eLr~~l~~~~~~ls~a~ 914 (1490)
+++++|++.+ +-|++-+
T Consensus 122 i~~~vr~~~~---~pv~vKi 138 (319)
T TIGR00737 122 IVKAVVDAVD---IPVTVKI 138 (319)
T ss_pred HHHHHHhhcC---CCEEEEE
Confidence 8888887764 4455544
No 232
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=25.33 E-value=4.8e+02 Score=29.68 Aligned_cols=143 Identities=16% Similarity=0.211 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCch
Q psy10300 809 FYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSD 888 (1490)
Q Consensus 809 ~~~~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d 888 (1490)
+.+.|..+|++|++| +.|||- |..+.. +.-++..++.+++.|||.|+|.=-.- .-.
T Consensus 56 l~eki~l~~~~gV~v--~~GGtl------~E~a~~-----q~~~~~yl~~~k~lGf~~IEiSdGti-----------~l~ 111 (244)
T PF02679_consen 56 LKEKIDLAHSHGVYV--YPGGTL------FEVAYQ-----QGKFDEYLEECKELGFDAIEISDGTI-----------DLP 111 (244)
T ss_dssp HHHHHHHHHCTT-EE--EE-HHH------HHHHHH-----TT-HHHHHHHHHHCT-SEEEE--SSS--------------
T ss_pred HHHHHHHHHHcCCeE--eCCcHH------HHHHHh-----cChHHHHHHHHHHcCCCEEEecCCce-----------eCC
Confidence 456777888888776 567752 333322 33567788889999999999853311 122
Q ss_pred hhhHHHHHHHHHHHhCCCCceEEEEECCChhhHhhhcC--------hhhhcccCceEEeeccccCCCCCCCCCCCCCCCC
Q psy10300 889 KESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYD--------VKALSESLDWISVMTYDYHGQWDKKTGHVAPLYE 960 (1490)
Q Consensus 889 ~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~~~~~~~~~--------~~~l~~~vD~i~vmtYD~~g~w~~~~g~~apl~~ 960 (1490)
.+....+|+.+ .+.|+.+..-+...........+ -..|..-+|+|.+-+=. .|-. .+|.
T Consensus 112 ~~~r~~~I~~~----~~~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarE--------sG~~-Gi~~ 178 (244)
T PF02679_consen 112 EEERLRLIRKA----KEEGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARE--------SGKG-GIYD 178 (244)
T ss_dssp HHHHHHHHHHH----CCTTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TT--------T--S-TTB-
T ss_pred HHHHHHHHHHH----HHCCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeec--------cCCC-CccC
Confidence 23344444444 35567766666543322222212 22344457888776542 2222 4444
Q ss_pred CCCCCccccCHHHHHHHHHHcCCCCCCeEEEeec
Q psy10300 961 HPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPM 994 (1490)
Q Consensus 961 ~~~~~~~~~~~~~~v~~~~~~G~p~~KlvlGlp~ 994 (1490)
..+. --...+..++.. ++.+||+.-.|.
T Consensus 179 ~~g~-----~r~d~v~~i~~~-~~~~~lifEAp~ 206 (244)
T PF02679_consen 179 NDGE-----VRTDLVEKIIER-LGLEKLIFEAPQ 206 (244)
T ss_dssp TTS------B-HHHHHHHHTT-S-GGGEEEE--S
T ss_pred CCCC-----ccHHHHHHHHHh-CCHhHEEEeCCC
Confidence 3321 122345555544 999999987774
No 233
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=25.06 E-value=2.8e+02 Score=30.30 Aligned_cols=79 Identities=16% Similarity=0.243 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCC---eEEEeecCCCCCCCCCCC
Q psy10300 1200 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD---GLDLDWEYPKCWQVDCKQ 1276 (1490)
Q Consensus 1200 ~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~D---GIDIDwE~P~~~~~~~~~ 1276 (1490)
..+.+.++.+++.|+++ |... |.....+....++-++..++.++.+++. =+-||+|... ..
T Consensus 38 ~~~~~n~~~A~~aGl~v----G~Yh------f~~~~~~~~~a~~eA~~f~~~~~~~~l~~~~~~~lDvE~~~------~~ 101 (196)
T cd06415 38 PKASAQVSSAIANGKMT----GGYH------FARFGGSVSQAKYEADYFLNSAQQAGLPKGSYLALDYEQGS------GN 101 (196)
T ss_pred ccHHHHHHHHHHCCCee----EEEE------EEecCCCHHHHHHHHHHHHHHhhhcCCCCCCEEEEEEecCC------CC
Confidence 45778899999999754 4322 3222223222333333444556666553 3688999432 11
Q ss_pred CCccchhhHHHHHHHHHH
Q psy10300 1277 GPASDKQGFADLIKELRA 1294 (1490)
Q Consensus 1277 ~~~~d~~~~~~ll~eLr~ 1294 (1490)
........+..|+++|++
T Consensus 102 ~~~~~~~~~~~f~~~v~~ 119 (196)
T cd06415 102 SKAANTSAILAFMDTIKD 119 (196)
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 111122345567777764
No 234
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=24.77 E-value=4.8e+02 Score=33.66 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=21.0
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEee
Q psy10300 1236 NSQQARSKFIAHVVNFILEHNFDGLDLDW 1264 (1490)
Q Consensus 1236 ~~~~~r~~fi~si~~~l~~~g~DGIDIDw 1264 (1490)
.+++.|+.+++.+.-++ ++|+||+-||-
T Consensus 174 ~np~V~~~l~~~~~~W~-~~GvDGfRlDa 201 (551)
T PRK10933 174 ENPAVRAELKKVCEFWA-DRGVDGLRLDV 201 (551)
T ss_pred CCHHHHHHHHHHHHHHH-HCCCcEEEEcc
Confidence 36778777776555555 68999999994
No 235
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=24.37 E-value=2.5e+02 Score=28.72 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=36.3
Q ss_pred HHHHHHhCCCeEEEEEeCCCCCCCcchhhhhc-CHHHHHHHHHHHHHHHHHcCCCeEEE
Q psy10300 812 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVN-SATARQRFIEHVVKFLLKYQFDGLDL 869 (1490)
Q Consensus 812 ~i~~~k~~g~KvllSiGG~~~s~~~~f~~~~~-~~~~r~~fi~s~~~~l~~ygfDGvDi 869 (1490)
.+..|++.|++|++-|==-+ +.|..-.. +.+.|+.+.+.|...++++||.=+||
T Consensus 41 ~L~~~k~~g~~~lfVi~PvN----g~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 41 LLDVCKELGIDVLFVIQPVN----GKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHTT-EEEEEE--------HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHcCCceEEEecCCc----HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 46788999999998775322 34444443 78899999999999999999976666
No 236
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=24.30 E-value=2.4e+02 Score=36.26 Aligned_cols=28 Identities=14% Similarity=0.177 Sum_probs=22.7
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEee
Q psy10300 1236 NSQQARSKFIAHVVNFILEHNFDGLDLDW 1264 (1490)
Q Consensus 1236 ~~~~~r~~fi~si~~~l~~~g~DGIDIDw 1264 (1490)
.+++.|+.+++.+..+++ +|+||+-||-
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDa 198 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDA 198 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEec
Confidence 467888888877777775 8999999994
No 237
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=24.22 E-value=2.5e+02 Score=32.97 Aligned_cols=87 Identities=11% Similarity=0.159 Sum_probs=54.1
Q ss_pred HHHHHHHHHHh----CCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHc--CCCeEEEeecCCCCCCCCC
Q psy10300 808 RFYERVVTLKK----KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY--QFDGLDLDWEYPTCWQVNC 881 (1490)
Q Consensus 808 ~~~~~i~~~k~----~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~y--gfDGvDiDwE~P~~~~~~~ 881 (1490)
.+.++++.+++ .+..|++||+|. . +.+++.+..+.+.. +.|+|||++-.|+..+.
T Consensus 75 ~~~~~i~~~~~~~~~~~~pvivsi~g~-~----------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~-- 135 (294)
T cd04741 75 YYLEYIRTISDGLPGSAKPFFISVTGS-A----------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGK-- 135 (294)
T ss_pred HHHHHHHHHhhhccccCCeEEEECCCC-H----------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCc--
Confidence 34555655544 367899999873 1 22444344433333 69999999998873211
Q ss_pred CCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 882 DAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 882 ~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
.....+.+.+..+++++|+... .-|++-++|.
T Consensus 136 -~~~~~~~~~~~~i~~~v~~~~~---iPv~vKl~p~ 167 (294)
T cd04741 136 -PPPAYDFDATLEYLTAVKAAYS---IPVGVKTPPY 167 (294)
T ss_pred -ccccCCHHHHHHHHHHHHHhcC---CCEEEEeCCC
Confidence 1123467788899999998863 3456666564
No 238
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=24.05 E-value=4e+02 Score=31.59 Aligned_cols=87 Identities=17% Similarity=0.180 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhC--CCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcC-CCeEEEeecCCCCCCCCCCCC
Q psy10300 808 RFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ-FDGLDLDWEYPTCWQVNCDAG 884 (1490)
Q Consensus 808 ~~~~~i~~~k~~--g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~yg-fDGvDiDwE~P~~~~~~~~~~ 884 (1490)
.+.+++..+++. ++.++.||-|.+. ..|+ .+++.++..+ .|.|+|++-.|+..+ . ..
T Consensus 78 ~~~~~i~~~~~~~~~~pvI~Si~G~~~----------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~--~-~~ 137 (310)
T PRK02506 78 YYLDYVLELQKKGPNKPHFLSVVGLSP----------------EETH-TILKKIQASDFNGLVELNLSCPNVPG--K-PQ 137 (310)
T ss_pred HHHHHHHHHHhhcCCCCEEEEEEeCcH----------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCC--c-cc
Confidence 455666666654 5889999987442 1122 2333456777 799999999886322 1 11
Q ss_pred CCchhhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 885 PDSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 885 ~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
...|.+.+..+++++|++.. .-+.+-++|.
T Consensus 138 ~g~d~~~~~~i~~~v~~~~~---~Pv~vKlsp~ 167 (310)
T PRK02506 138 IAYDFETTEQILEEVFTYFT---KPLGVKLPPY 167 (310)
T ss_pred cccCHHHHHHHHHHHHHhcC---CccEEecCCC
Confidence 13356678889999998764 2244445454
No 239
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=23.99 E-value=2.5e+02 Score=30.82 Aligned_cols=18 Identities=11% Similarity=0.226 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhcCCcEE
Q psy10300 1199 DNKFYEKVTALKKKGVKV 1216 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~Kv 1216 (1490)
+..+...++.+++.|+++
T Consensus 38 D~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 38 NPRFSSQYNGAYNAGLIR 55 (199)
T ss_pred ChhHHHHHHHHHHcCCce
Confidence 456788899999999754
No 240
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=23.88 E-value=1.9e+02 Score=34.31 Aligned_cols=64 Identities=22% Similarity=0.376 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcc-hhhh----------------------------hcCHHHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNK-YSRL----------------------------VNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~-f~~~----------------------------~~~~~~r~~fi~si~~~l 1252 (1490)
..+.|+.||++|+||++.|--.-...... |..+ +.+++.|+=|.+.+.+++
T Consensus 73 p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 152 (317)
T cd06594 73 LDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEML 152 (317)
T ss_pred HHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHh
Confidence 45778899999999998773211100011 1111 236899999999999998
Q ss_pred HHcCCCeEEEeec
Q psy10300 1253 LEHNFDGLDLDWE 1265 (1490)
Q Consensus 1253 ~~~g~DGIDIDwE 1265 (1490)
.++|+||+=+|+-
T Consensus 153 ~~~Gvdg~w~D~~ 165 (317)
T cd06594 153 LDLGLSGWMADFG 165 (317)
T ss_pred hhcCCcEEEecCC
Confidence 9999999999984
No 241
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=23.72 E-value=1.9e+02 Score=34.20 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=57.7
Q ss_pred CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCC--CccchhhHHHHHH
Q psy10300 1213 GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQG--PASDKQGFADLIK 1290 (1490)
Q Consensus 1213 g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~--~~~d~~~~~~ll~ 1290 (1490)
+..+.+.|.|.+ + +.|++ .+..+.+.|+|||||+.--|...-.....+ --.+......+++
T Consensus 62 e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~ 124 (312)
T PRK10550 62 GTLVRIQLLGQY-------------P---QWLAE-NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAK 124 (312)
T ss_pred CCcEEEEeccCC-------------H---HHHHH-HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHH
Confidence 567889988732 1 22333 333456679999999998775211111111 1245566778889
Q ss_pred HHHHhcCCCCcEEEEEeCCChhhhhccCChhh-hcc-cCcEEEEe
Q psy10300 1291 ELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPV-MSE-NLDWISVM 1333 (1490)
Q Consensus 1291 eLr~~l~~~~~~ls~av~~~~~~~~~~~d~~~-l~~-~vD~i~vm 1333 (1490)
++|+++.. ++-|++-+...........++.. +.+ -+|+|.|-
T Consensus 125 avr~~~~~-~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 125 AMREAVPA-HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHhcCC-CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 99988743 35677766543211111122222 222 38999883
No 242
>PLN02361 alpha-amylase
Probab=23.70 E-value=2.6e+02 Score=34.36 Aligned_cols=30 Identities=13% Similarity=0.265 Sum_probs=21.4
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q psy10300 843 NSATARQRFIEHVVKFLLKYQFDGLDLDWE 872 (1490)
Q Consensus 843 ~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE 872 (1490)
.++.-|+.+++.+.-++++.||||+-||.=
T Consensus 152 ~np~Vr~~l~~~~~wl~~~~GiDGfRlDav 181 (401)
T PLN02361 152 TQHFVRKDIIGWLIWLRNDVGFQDFRFDFA 181 (401)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCEEEEecc
Confidence 356677777776643334599999999966
No 243
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=23.59 E-value=2.6e+02 Score=37.78 Aligned_cols=91 Identities=21% Similarity=0.270 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHcCCCeEEEeec---------CCCCC-CCCCCCCCccchhh-HHHHHHHHHHhcCCCCcEEEEEeC
Q psy10300 1240 ARSKFIAHVVNFILEHNFDGLDLDWE---------YPKCW-QVDCKQGPASDKQG-FADLIKELRAAFNPHDLLLSAAVS 1308 (1490)
Q Consensus 1240 ~r~~fi~si~~~l~~~g~DGIDIDwE---------~P~~~-~~~~~~~~~~d~~~-~~~ll~eLr~~l~~~~~~ls~av~ 1308 (1490)
-.+.|++... .+++-|||||+|.-- -|... ..+..+++-+++.. ....|+.+|++... ++.|++-+.
T Consensus 549 ~i~~f~~aA~-~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~-~~~v~~ri~ 626 (765)
T PRK08255 549 VRDDFVAAAR-RAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPA-EKPMSVRIS 626 (765)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCC-CCeeEEEEc
Confidence 3455665554 445679999999876 34421 12222334344444 44578888888854 577888777
Q ss_pred CChhhhhccCCh-------hhhcc-cCcEEEEe
Q psy10300 1309 PSKAVIDNAYDI-------PVMSE-NLDWISVM 1333 (1490)
Q Consensus 1309 ~~~~~~~~~~d~-------~~l~~-~vD~i~vm 1333 (1490)
+.... ..+.+. +.|.+ -+|+|+|-
T Consensus 627 ~~~~~-~~g~~~~~~~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 627 AHDWV-EGGNTPDDAVEIARAFKAAGADLIDVS 658 (765)
T ss_pred ccccc-CCCCCHHHHHHHHHHHHhcCCcEEEeC
Confidence 64321 122222 23333 38999985
No 244
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.57 E-value=2.2e+02 Score=33.35 Aligned_cols=66 Identities=18% Similarity=0.266 Sum_probs=46.5
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcC--CCCCcchhh-----------------hhcCHHHHHHHHHHHHHHHHHcCCCeEEE
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWN--DSAGNKYSR-----------------LVNSQQARSKFIAHVVNFILEHNFDGLDL 1262 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~--~s~~~~f~~-----------------~~~~~~~r~~fi~si~~~l~~~g~DGIDI 1262 (1490)
..+.++.||++|+|+++.|-=.. ......|.. -..+++.++-|.+.+.+.+.+.|+||+=+
T Consensus 76 p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~ 155 (292)
T cd06595 76 PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWL 155 (292)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 35778889999999998772110 000011211 13578899999999999999999999999
Q ss_pred eecCC
Q psy10300 1263 DWEYP 1267 (1490)
Q Consensus 1263 DwE~P 1267 (1490)
|+--|
T Consensus 156 D~~E~ 160 (292)
T cd06595 156 DWQQG 160 (292)
T ss_pred cCCCC
Confidence 98433
No 245
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.57 E-value=3.2e+02 Score=32.55 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhC-CCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCC
Q psy10300 808 RFYERVVTLKKK-GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPD 886 (1490)
Q Consensus 808 ~~~~~i~~~k~~-g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~ 886 (1490)
.+.+.+..++++ +..|++||.|.+ .+.|+ .++..+++.|+|+|+|+.-.|... .+.. ..
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~----------------~~~~~-~~a~~~~~~gad~iElN~s~~~~~-~~~~--g~ 145 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVS----------------AGGWV-DYARQIEEAGADALELNIYALPTD-PDIS--GA 145 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCC----------------HHHHH-HHHHHHHhcCCCEEEEeCCCCCCC-CCcc--cc
Confidence 345566666544 788999997622 12233 344456777899999999864211 0111 11
Q ss_pred chhhhHHHHHHHHHHHhC
Q psy10300 887 SDKESFGLFVRELHQAFK 904 (1490)
Q Consensus 887 ~d~~~~~~ll~eLr~~l~ 904 (1490)
+..+.+..+++++|++.+
T Consensus 146 ~~~~~~~eiv~~v~~~~~ 163 (325)
T cd04739 146 EVEQRYLDILRAVKSAVT 163 (325)
T ss_pred hHHHHHHHHHHHHHhccC
Confidence 223456778888887763
No 246
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=23.52 E-value=3.8e+02 Score=32.01 Aligned_cols=87 Identities=17% Similarity=0.270 Sum_probs=51.1
Q ss_pred HHHHHHHHHhcC-CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCc
Q psy10300 1201 KFYEKVTALKKK-GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA 1279 (1490)
Q Consensus 1201 ~~~~~i~~~k~~-g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~ 1279 (1490)
.+.+.+..+++. +..|+++|.|... +.| ..++..+++.|+|+|+|+.-.|.... .....
T Consensus 86 ~~~~~i~~~~~~~~~pvi~si~g~~~----------------~~~-~~~a~~~~~~gad~iElN~s~~~~~~---~~~g~ 145 (325)
T cd04739 86 EYLELIRRAKRAVSIPVIASLNGVSA----------------GGW-VDYARQIEEAGADALELNIYALPTDP---DISGA 145 (325)
T ss_pred HHHHHHHHHHhccCCeEEEEeCCCCH----------------HHH-HHHHHHHHhcCCCEEEEeCCCCCCCC---Ccccc
Confidence 345556555443 6889999976211 122 24555667789999999997543110 01111
Q ss_pred cchhhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q psy10300 1280 SDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310 (1490)
Q Consensus 1280 ~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~ 1310 (1490)
+..+.+..+++.+|++.+ .-|++-+.+.
T Consensus 146 ~~~~~~~eiv~~v~~~~~---iPv~vKl~p~ 173 (325)
T cd04739 146 EVEQRYLDILRAVKSAVT---IPVAVKLSPF 173 (325)
T ss_pred hHHHHHHHHHHHHHhccC---CCEEEEcCCC
Confidence 223456788888888763 3466666553
No 247
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.21 E-value=2.1e+02 Score=34.08 Aligned_cols=63 Identities=22% Similarity=0.253 Sum_probs=41.1
Q ss_pred HHHHHHHhcCCcEEEEEEc----------------Cc---CCCCC-----------cchhhhhcCHHHHHHHHHHHHHHH
Q psy10300 1203 YEKVTALKKKGVKVTLAIG----------------GW---NDSAG-----------NKYSRLVNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1203 ~~~i~~~k~~g~KvllsiG----------------G~---~~s~~-----------~~f~~~~~~~~~r~~fi~si~~~l 1252 (1490)
.+.+..||++|+||++.|- |+ ....+ ..|.. +.|++.|+=|.+.+.++
T Consensus 73 ~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~D-ftnp~a~~w~~~~~~~~- 150 (317)
T cd06598 73 AGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLID-WFDPAAQAWFHDNYKKL- 150 (317)
T ss_pred HHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccC-CCCHHHHHHHHHHHHHh-
Confidence 4678888999999998772 11 00000 01112 34888888887766554
Q ss_pred HHcCCCeEEEeecCC
Q psy10300 1253 LEHNFDGLDLDWEYP 1267 (1490)
Q Consensus 1253 ~~~g~DGIDIDwE~P 1267 (1490)
.+.|+||+=+|+--|
T Consensus 151 ~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 151 IDQGVTGWWGDLGEP 165 (317)
T ss_pred hhCCccEEEecCCCc
Confidence 889999999999534
No 248
>PRK08005 epimerase; Validated
Probab=23.16 E-value=2.2e+02 Score=31.69 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=50.9
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCCchhhhHHHHHHHHHHHhCCCCceEEEEECCCh
Q psy10300 839 SRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSK 918 (1490)
Q Consensus 839 ~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~~ 918 (1490)
+-|+.+++. |+ ..+.+.|.|-|-|.+|- . .+...+++.+|+. |...-+|+.|..
T Consensus 64 HLMv~~P~~---~i----~~~~~~gad~It~H~Ea------------~---~~~~~~l~~Ik~~----G~k~GlAlnP~T 117 (210)
T PRK08005 64 HLMVSSPQR---WL----PWLAAIRPGWIFIHAES------------V---QNPSEILADIRAI----GAKAGLALNPAT 117 (210)
T ss_pred EeccCCHHH---HH----HHHHHhCCCEEEEcccC------------c---cCHHHHHHHHHHc----CCcEEEEECCCC
Confidence 345566654 43 44456799999999991 1 2345667777654 677888888875
Q ss_pred hhHhhhcChhhhcccCceEEeeccc
Q psy10300 919 QVINAAYDVKALSESLDWISVMTYD 943 (1490)
Q Consensus 919 ~~~~~~~~~~~l~~~vD~i~vmtYD 943 (1490)
... .+..+.+.+|+|-||+-+
T Consensus 118 p~~----~i~~~l~~vD~VlvMsV~ 138 (210)
T PRK08005 118 PLL----PYRYLALQLDALMIMTSE 138 (210)
T ss_pred CHH----HHHHHHHhcCEEEEEEec
Confidence 432 245566789999999997
No 249
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=23.06 E-value=3.1e+02 Score=32.82 Aligned_cols=107 Identities=16% Similarity=0.279 Sum_probs=59.4
Q ss_pred HHHHHHHHHhcC-CcEEEEEEcCcCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCc
Q psy10300 1201 KFYEKVTALKKK-GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPA 1279 (1490)
Q Consensus 1201 ~~~~~i~~~k~~-g~KvllsiGG~~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~ 1279 (1490)
.+.+.+..++++ ++.|+++|+|.+. +.+ ..++..+++.|+|+|+|++-.|.... +.. ..
T Consensus 88 ~~~~~i~~~~~~~~~pvi~sI~g~~~----------------~e~-~~~a~~~~~agad~ielN~scpp~~~-~~~--g~ 147 (334)
T PRK07565 88 EYLELIRRAKEAVDIPVIASLNGSSA----------------GGW-VDYARQIEQAGADALELNIYYLPTDP-DIS--GA 147 (334)
T ss_pred HHHHHHHHHHHhcCCcEEEEeccCCH----------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCC-CCc--cc
Confidence 344555555443 6899999987321 122 23555667789999999997644211 111 11
Q ss_pred cchhhHHHHHHHHHHhcCCCCcEEEEEeCCChhhhhccCCh-hhh-cccCcEEEEe
Q psy10300 1280 SDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI-PVM-SENLDWISVM 1333 (1490)
Q Consensus 1280 ~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~~~~~~~~d~-~~l-~~~vD~i~vm 1333 (1490)
...+.+..+|+++|+..+ .-|++-+.+..... .++ ..+ ..-+|.|.+.
T Consensus 148 ~~~~~~~eil~~v~~~~~---iPV~vKl~p~~~~~---~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 148 EVEQRYLDILRAVKSAVS---IPVAVKLSPYFSNL---ANMAKRLDAAGADGLVLF 197 (334)
T ss_pred cHHHHHHHHHHHHHhccC---CcEEEEeCCCchhH---HHHHHHHHHcCCCeEEEE
Confidence 223457788899988763 34566555532111 111 112 2348888763
No 250
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=22.96 E-value=2e+02 Score=40.83 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc-------CcC-------CC-CCcch-------------h-----hhhcCHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG-------GWN-------DS-AGNKY-------------S-----RLVNSQQARSKFI 1245 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG-------G~~-------~s-~~~~f-------------~-----~~~~~~~~r~~fi 1245 (1490)
..+|.+.|+++|++|++|||=|= +.. .. .+..| . --+.++..|+-.+
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 35688999999999999997651 100 00 00000 0 0123577787788
Q ss_pred HHHHHHHHHcCCCeEEEeec
Q psy10300 1246 AHVVNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1246 ~si~~~l~~~g~DGIDIDwE 1265 (1490)
+++.-+++ +|+||+-||--
T Consensus 326 d~lr~Wv~-~gVDGfRfDla 344 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLA 344 (1221)
T ss_pred HHHHHHHH-hCCCEEEEech
Confidence 88888888 99999999975
No 251
>PF04414 tRNA_deacylase: D-aminoacyl-tRNA deacylase; InterPro: IPR007508 D-aminoacyl-tRNA deacylases hydrolyse the ester bond between the polynucleotide and the D-amino acid, thereby preventing the accumulation of such mis-acylated and metabolically inactive tRNA molecules. Several aminoacyl-tRNA synthetases have the ability to transfer the D-isomer of their amino acid onto their cognate tRNA. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1YQE_A 2GFQ_B.
Probab=22.77 E-value=1e+02 Score=34.27 Aligned_cols=77 Identities=13% Similarity=0.111 Sum_probs=40.4
Q ss_pred hhhHHHhhhhhcCCCc---eEEEEecc-----chhh-----------hhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeC
Q psy10300 182 GGYKSFLGLKEANPEL---KVYLAVKS-----NFVS-----------ITSDRESRLNFISSVLEMFDMYKFDGLDLNVKD 242 (1490)
Q Consensus 182 ~~~~~~~~LK~~np~l---KvllsvGg-----~fs~-----------~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~ 242 (1490)
-.-+.+..+-..-.+. +++|++|| +|.+ ++.+-....-=-+-+.+-+++.+.+-+.|||+
T Consensus 112 ~vA~avl~~~~~~~~~~~~~~~ig~GG~HYapr~t~~~l~~~~~~GHi~~ky~l~~l~~~~l~~a~~~s~~~~a~id~K- 190 (213)
T PF04414_consen 112 AVARAVLEVLESDEKAECCPVAIGFGGGHYAPRFTKLALETEYAFGHIIPKYALDELDEDVLRQAIEKSGADVAIIDWK- 190 (213)
T ss_dssp HHHHHHHHHHHHTTCSTT-EEEEEE-S-TT-HHHHHHHHHCSEEEEEEE-GGGGGG--HHHHHHHHCHCT-SEEEEETT-
T ss_pred HHHHHHHHHhcccccccccceeEEecCcccchhhhhhhhcCCeEEEeeccCcchhhcCHHHHHHHHHhCCCcEEEEecC-
Confidence 3445555555544433 89999999 2222 22221000000122333445568899999999
Q ss_pred CCCCCCCCccccchhhhHHHHHHHHHHH
Q psy10300 243 PALNDEDDDDLESIANERSDFSTFIQEL 270 (1490)
Q Consensus 243 p~~~~~~~~~~~~~~~d~~~f~~ll~eL 270 (1490)
+....+|+....++++|
T Consensus 191 -----------~l~~~~r~~i~~~l~~~ 207 (213)
T PF04414_consen 191 -----------SLKSEDRRRIEELLEEL 207 (213)
T ss_dssp -----------TS-HHHHHHHHHHHHHH
T ss_pred -----------CCCHHHHHHHHHHHHHc
Confidence 33456787777777776
No 252
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=22.77 E-value=2.5e+02 Score=30.69 Aligned_cols=56 Identities=11% Similarity=0.180 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhhh--cCH-HHHHHHHHHHHHHHHHcCCC--eEEEeecCC
Q psy10300 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLV--NSQ-QARSKFIAHVVNFILEHNFD--GLDLDWEYP 1267 (1490)
Q Consensus 1198 ~~~~~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~~--~~~-~~r~~fi~si~~~l~~~g~D--GIDIDwE~P 1267 (1490)
.+..+.+.++.+++.|+++ |-. +|.... .++ +..+.|++. ++.++.+ -|-||+|..
T Consensus 37 ~D~~f~~n~~~A~~aGl~~----G~Y------hf~~~~~~~~~~~Qa~~f~~~----~~~~~~~~~~i~lDiE~~ 97 (196)
T cd06416 37 FDPNSVTNIKNARAAGLST----DVY------FFPCINCCGSAAGQVQTFLQY----LKANGIKYGTVWIDIEQN 97 (196)
T ss_pred cChHHHHHHHHHHHcCCcc----ceE------EEecCCCCCCHHHHHHHHHHH----HHhCCCceeEEEEEEecC
Confidence 4567888899999999877 322 222222 233 333344444 4444444 467999953
No 253
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=22.65 E-value=2.5e+02 Score=33.79 Aligned_cols=72 Identities=14% Similarity=0.227 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEeeC---------CCCCCCCCccccchhhhHHHHH-HHHHHHHHHHhhcCcEEEEEe
Q psy10300 216 SRLNFISSVLEMFDMYKFDGLDLNVKD---------PALNDEDDDDLESIANERSDFS-TFIQELSSTLRRNNYQLTLTS 285 (1490)
Q Consensus 216 ~r~~fi~siv~~l~~~~fDGvdldwe~---------p~~~~~~~~~~~~~~~d~~~f~-~ll~eLr~~~~~~~~~ls~~v 285 (1490)
-.+.|++.+. ..++-|||||+|+=-. |....+ .+-.+|+.++|-.|. +.|+++|+++.. .+.|.+-+
T Consensus 147 ii~~f~~AA~-~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~R-tDeYGGs~ENR~Rf~~Eii~aIr~~vg~-d~~v~~Rl 223 (341)
T PF00724_consen 147 IIEDFAQAAR-RAKEAGFDGVEIHAAHGYLLSQFLSPLTNRR-TDEYGGSLENRARFLLEIIEAIREAVGP-DFPVGVRL 223 (341)
T ss_dssp HHHHHHHHHH-HHHHTT-SEEEEEESTTSHHHHHHSTTT----SSTTSSSHHHHHHHHHHHHHHHHHHHTG-GGEEEEEE
T ss_pred HHHHHHHHHH-HHHHhccCeEeecccchhhhhheeeeccCCC-chhhhhhhchhhHHHHHHHHHHHHHhcC-CceEEEEE
Confidence 3445666555 4566899999998532 433333 234567777776654 456777777755 36677777
Q ss_pred ccccc
Q psy10300 286 PGVID 290 (1490)
Q Consensus 286 ~~~~~ 290 (1490)
++...
T Consensus 224 s~~~~ 228 (341)
T PF00724_consen 224 SPDDF 228 (341)
T ss_dssp ETTCS
T ss_pred eeecc
Confidence 66543
No 254
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.15 E-value=1.3e+03 Score=26.94 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=14.8
Q ss_pred HHHHHHHHHhCCCeEEEEEe
Q psy10300 809 FYERVVTLKKKGVKVSLAIG 828 (1490)
Q Consensus 809 ~~~~i~~~k~~g~KvllSiG 828 (1490)
..+.-+++|+.|+|||+-+-
T Consensus 106 ~ieiakRAk~~GmKVl~dFH 125 (403)
T COG3867 106 AIEIAKRAKNLGMKVLLDFH 125 (403)
T ss_pred HHHHHHHHHhcCcEEEeecc
Confidence 34455677788999999774
No 255
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=22.13 E-value=2.1e+02 Score=33.97 Aligned_cols=63 Identities=24% Similarity=0.362 Sum_probs=45.0
Q ss_pred HHHHHHHHhCCCeEEEEEeCCCCCCCcc-hhhh----------------------------hcCHHHHHHHHHHHHHHHH
Q psy10300 810 YERVVTLKKKGVKVSLAIGGWNDSLGGK-YSRL----------------------------VNSATARQRFIEHVVKFLL 860 (1490)
Q Consensus 810 ~~~i~~~k~~g~KvllSiGG~~~s~~~~-f~~~----------------------------~~~~~~r~~fi~s~~~~l~ 860 (1490)
.+.|..||++|+||++.|--.-...... |..+ +.++++|+=|.+.+.+++.
T Consensus 74 ~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 153 (317)
T cd06594 74 DELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLL 153 (317)
T ss_pred HHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhh
Confidence 4678899999999998774321100111 1221 2468899999999999989
Q ss_pred HcCCCeEEEeec
Q psy10300 861 KYQFDGLDLDWE 872 (1490)
Q Consensus 861 ~ygfDGvDiDwE 872 (1490)
++|+||+=+|+-
T Consensus 154 ~~Gvdg~w~D~~ 165 (317)
T cd06594 154 DLGLSGWMADFG 165 (317)
T ss_pred hcCCcEEEecCC
Confidence 999999999875
No 256
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.82 E-value=5.1e+02 Score=31.10 Aligned_cols=30 Identities=17% Similarity=0.216 Sum_probs=26.3
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCCeEEEeec
Q psy10300 1236 NSQQARSKFIAHVVNFILEHNFDGLDLDWE 1265 (1490)
Q Consensus 1236 ~~~~~r~~fi~si~~~l~~~g~DGIDIDwE 1265 (1490)
.|+++|+=+.+.+..+++++|+||+=+|.-
T Consensus 157 tnp~a~~Ww~~~~~~~~~~~Gidg~w~D~~ 186 (340)
T cd06597 157 TNPEAAQWWMEKRRYLVDELGIDGFKTDGG 186 (340)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCcEEEecCC
Confidence 478899988888888888999999999974
No 257
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=21.58 E-value=2.2e+02 Score=36.94 Aligned_cols=66 Identities=20% Similarity=0.286 Sum_probs=46.5
Q ss_pred hHHHHHHHHHHhcCCcEEEEEEc-CcCCCC----------------------Ccchhhh---hcCHHHHHHHHHHHHHHH
Q psy10300 1199 DNKFYEKVTALKKKGVKVTLAIG-GWNDSA----------------------GNKYSRL---VNSQQARSKFIAHVVNFI 1252 (1490)
Q Consensus 1199 ~~~~~~~i~~~k~~g~KvllsiG-G~~~s~----------------------~~~f~~~---~~~~~~r~~fi~si~~~l 1252 (1490)
.+.|...|.++|++||-|||=+= |..... ...|-.. ....+-|.=|+.++.-+|
T Consensus 213 Pedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~Wl 292 (628)
T COG0296 213 PEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYWL 292 (628)
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHHH
Confidence 46788999999999999997641 100000 0111111 225688999999999999
Q ss_pred HHcCCCeEEEee
Q psy10300 1253 LEHNFDGLDLDW 1264 (1490)
Q Consensus 1253 ~~~g~DGIDIDw 1264 (1490)
++|.+||+-+|=
T Consensus 293 ~~yHiDGlRvDA 304 (628)
T COG0296 293 EEYHIDGLRVDA 304 (628)
T ss_pred HHhCCcceeeeh
Confidence 999999998884
No 258
>PRK13042 superantigen-like protein; Reviewed
Probab=21.50 E-value=1.6e+02 Score=33.60 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=5.2
Q ss_pred CCeEEEEEeC
Q psy10300 820 GVKVSLAIGG 829 (1490)
Q Consensus 820 g~KvllSiGG 829 (1490)
|+-|++-.-+
T Consensus 162 ~lDVF~V~E~ 171 (291)
T PRK13042 162 NVDVFVVLEE 171 (291)
T ss_pred CceEEEEecc
Confidence 5555554444
No 259
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=21.44 E-value=1.7e+02 Score=35.12 Aligned_cols=69 Identities=20% Similarity=0.299 Sum_probs=43.5
Q ss_pred hCCCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCC--CCchhhhHHHH
Q psy10300 818 KKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAG--PDSDKESFGLF 895 (1490)
Q Consensus 818 ~~g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~~~~--~~~d~~~~~~l 895 (1490)
.....+.+.|+|.+ + +.|++ .+..++++|||||||+.-.|...-.....| --.+.+....+
T Consensus 62 ~~e~p~~vQl~g~~-------------p---~~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~ei 124 (333)
T PRK11815 62 PEEHPVALQLGGSD-------------P---ADLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADC 124 (333)
T ss_pred CCCCcEEEEEeCCC-------------H---HHHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHH
Confidence 34678999999853 2 22444 345667899999999998775311111111 12355566778
Q ss_pred HHHHHHHh
Q psy10300 896 VRELHQAF 903 (1490)
Q Consensus 896 l~eLr~~l 903 (1490)
++++|++.
T Consensus 125 v~avr~~v 132 (333)
T PRK11815 125 VKAMKDAV 132 (333)
T ss_pred HHHHHHHc
Confidence 88888876
No 260
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=21.26 E-value=2.3e+02 Score=33.27 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=44.5
Q ss_pred HHHHHHHHhCCCeEEEEEeCCC--CCCCcchhh-----------------hhcCHHHHHHHHHHHHHHHHHcCCCeEEEe
Q psy10300 810 YERVVTLKKKGVKVSLAIGGWN--DSLGGKYSR-----------------LVNSATARQRFIEHVVKFLLKYQFDGLDLD 870 (1490)
Q Consensus 810 ~~~i~~~k~~g~KvllSiGG~~--~s~~~~f~~-----------------~~~~~~~r~~fi~s~~~~l~~ygfDGvDiD 870 (1490)
.+.|+.||++|+|+++.+-=.- ......|.. -+.+++.++-|.+.+.+.+.++|+||+=+|
T Consensus 77 ~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D 156 (292)
T cd06595 77 EKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLD 156 (292)
T ss_pred HHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEec
Confidence 4568889999999998773110 000001111 235788888899999999999999999999
Q ss_pred ec
Q psy10300 871 WE 872 (1490)
Q Consensus 871 wE 872 (1490)
+-
T Consensus 157 ~~ 158 (292)
T cd06595 157 WQ 158 (292)
T ss_pred CC
Confidence 84
No 261
>KOG3111|consensus
Probab=21.04 E-value=2.4e+02 Score=30.48 Aligned_cols=75 Identities=23% Similarity=0.388 Sum_probs=50.8
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCCCCCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCCh
Q psy10300 1232 SRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSK 1311 (1490)
Q Consensus 1232 ~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~~~~~~~~~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~~ 1311 (1490)
+-|+.+++. .+.-+.+-|.+.+-|.+| .. +....+++.+| ++|...-+++-|..
T Consensus 70 HmMV~~Peq-------~V~~~a~agas~~tfH~E-------------~~--q~~~~lv~~ir----~~Gmk~G~alkPgT 123 (224)
T KOG3111|consen 70 HMMVENPEQ-------WVDQMAKAGASLFTFHYE-------------AT--QKPAELVEKIR----EKGMKVGLALKPGT 123 (224)
T ss_pred EEeecCHHH-------HHHHHHhcCcceEEEEEe-------------ec--cCHHHHHHHHH----HcCCeeeEEeCCCC
Confidence 345566654 455666779999999999 11 12444555544 57888889988765
Q ss_pred hhhhccCChhhhcccCcEEEEeecc
Q psy10300 1312 AVIDNAYDIPVMSENLDWISVMTYD 1336 (1490)
Q Consensus 1312 ~~~~~~~d~~~l~~~vD~i~vmtYD 1336 (1490)
..- ++..+...+|++.|||-.
T Consensus 124 ~Ve----~~~~~~~~~D~vLvMtVe 144 (224)
T KOG3111|consen 124 PVE----DLEPLAEHVDMVLVMTVE 144 (224)
T ss_pred cHH----HHHHhhccccEEEEEEec
Confidence 432 345567789999999976
No 262
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=20.84 E-value=2.6e+02 Score=33.60 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=28.2
Q ss_pred hcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCC
Q psy10300 1235 VNSQQARSKFIAHVVNFILEHNFDGLDLDWEYP 1267 (1490)
Q Consensus 1235 ~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P 1267 (1490)
+.|+++|+=|.+.+.+++.++|+||+=+|+--|
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 458899998888888889999999999999644
No 263
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=20.76 E-value=2.5e+02 Score=33.32 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcC--CC------------------CCc-----------chhhhhcCHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWN--DS------------------AGN-----------KYSRLVNSQQARSKFIAHVVN 1250 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~--~s------------------~~~-----------~f~~~~~~~~~r~~fi~si~~ 1250 (1490)
..+.++.+|++|+||++.|--.- ++ .+. .|- =..+++.|+-+.+.+.+
T Consensus 66 p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~-Dftnp~a~~ww~~~~~~ 144 (317)
T cd06600 66 PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYP-DFTNPDTREWWAGLFSE 144 (317)
T ss_pred HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCcccc-CCCChHHHHHHHHHHHH
Confidence 35678889999999997762100 00 000 011 13589999999999999
Q ss_pred HHHHcCCCeEEEeecCC
Q psy10300 1251 FILEHNFDGLDLDWEYP 1267 (1490)
Q Consensus 1251 ~l~~~g~DGIDIDwE~P 1267 (1490)
++.+.|+||+=+|+--|
T Consensus 145 ~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 145 WLNSQGVDGIWLDMNEP 161 (317)
T ss_pred HhhcCCCceEEeeCCCC
Confidence 88899999999999534
No 264
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=20.73 E-value=6e+02 Score=29.86 Aligned_cols=90 Identities=20% Similarity=0.251 Sum_probs=53.7
Q ss_pred HHHHHHHHHhC--CCeEEEEEeCCCCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCCCCCCCC-CCCC
Q psy10300 809 FYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNC-DAGP 885 (1490)
Q Consensus 809 ~~~~i~~~k~~--g~KvllSiGG~~~s~~~~f~~~~~~~~~r~~fi~s~~~~l~~ygfDGvDiDwE~P~~~~~~~-~~~~ 885 (1490)
+.+.+..+++. ...++.|+.|.. ++ +.|++ +++.+++.|+|+|||++-.|....... ...-
T Consensus 86 ~~~~~~~~~~~~~~~p~i~si~G~~------------~~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l 149 (299)
T cd02940 86 WLKEIRELKKDFPDKILIASIMCEY------------NK---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAV 149 (299)
T ss_pred HHHHHHHHHhhCCCCeEEEEecCCC------------CH---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhh
Confidence 33445555443 477899998741 11 23444 334556789999999999987311000 0011
Q ss_pred CchhhhHHHHHHHHHHHhCCCCceEEEEECCC
Q psy10300 886 DSDKESFGLFVRELHQAFKPHGLLLSAAVSPS 917 (1490)
Q Consensus 886 ~~d~~~~~~ll~eLr~~l~~~~~~ls~a~~~~ 917 (1490)
..+.+.+..+++.+|+..+ .-|++-+.+.
T Consensus 150 ~~~~~~~~~iv~~v~~~~~---~Pv~vKl~~~ 178 (299)
T cd02940 150 GQDPELVEEICRWVREAVK---IPVIAKLTPN 178 (299)
T ss_pred ccCHHHHHHHHHHHHHhcC---CCeEEECCCC
Confidence 2567788889999988763 3455555553
No 265
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=20.41 E-value=4.1e+02 Score=32.45 Aligned_cols=92 Identities=13% Similarity=0.126 Sum_probs=52.6
Q ss_pred hhHHHhhhhhcCCCceEEEEeccchhhhhcCHHHHHHHHHHHHHHHHhcCCceeEEEeeCCCCCCCCCccccch--hhhH
Q psy10300 183 GYKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESI--ANER 260 (1490)
Q Consensus 183 ~~~~~~~LK~~np~lKvllsvGg~fs~~~~~~~~r~~fi~siv~~l~~~~fDGvdldwe~p~~~~~~~~~~~~~--~~d~ 260 (1490)
..+.+..+|+..|++.|++||.+.++ + ..|+ .+++.+++.|.|+++|++-.|...... +.+. ..+.
T Consensus 100 ~l~~i~~~k~~~~~~pvIaSi~~~~s-----~---~~~~-~~a~~~e~~GaD~iELNiSCPn~~~~r---~~g~~~gq~~ 167 (385)
T PLN02495 100 MLAEFKQLKEEYPDRILIASIMEEYN-----K---DAWE-EIIERVEETGVDALEINFSCPHGMPER---KMGAAVGQDC 167 (385)
T ss_pred HHHHHHHHHhhCCCCcEEEEccCCCC-----H---HHHH-HHHHHHHhcCCCEEEEECCCCCCCCcC---ccchhhccCH
Confidence 34445667877788999999954221 1 1122 233456778999999999988753210 0111 1244
Q ss_pred HHHHHHHHHHHHHHhhcCcEEEEEecccc
Q psy10300 261 SDFSTFIQELSSTLRRNNYQLTLTSPGVI 289 (1490)
Q Consensus 261 ~~f~~ll~eLr~~~~~~~~~ls~~v~~~~ 289 (1490)
+...++++.+++.. ..-|.+-++|+.
T Consensus 168 e~~~~i~~~Vk~~~---~iPv~vKLsPn~ 193 (385)
T PLN02495 168 DLLEEVCGWINAKA---TVPVWAKMTPNI 193 (385)
T ss_pred HHHHHHHHHHHHhh---cCceEEEeCCCh
Confidence 44555555555543 245666666654
No 266
>PF05086 Dicty_REP: Dictyostelium (Slime Mold) REP protein; InterPro: IPR007778 This family consists of REP proteins from a number of Dictyostelium species (Slime molds). REP protein is probably involved in transcription regulation and control of DNA replication, specifically the amplification of plasmid at low copy numbers. The formation of homomultimers may be required for their regulatory activity [].
Probab=20.14 E-value=98 Score=39.87 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=13.0
Q ss_pred eEeCCeEEEecChHHHHHHHHH
Q psy10300 429 MVKKDEWITYENNDSIRRKMNY 450 (1490)
Q Consensus 429 ~~~~~~wv~Yed~~Sl~~K~~~ 450 (1490)
.+.++.-++|-+.+.+-.|..|
T Consensus 130 IF~Kk~i~~fR~~Ek~Vt~~GY 151 (911)
T PF05086_consen 130 IFSKKSIPSFRNIEKLVTSAGY 151 (911)
T ss_pred eeccccccchhhHHHHHHhccc
Confidence 3445556677776666665434
No 267
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=20.09 E-value=5.5e+02 Score=31.80 Aligned_cols=91 Identities=11% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhc--CCcEEEEEEcCc-CCCCCcchhhhhcCHHHHHHHHHHHHHHHHHcCCCeEEEeecCCC-CCCCCCC
Q psy10300 1200 NKFYEKVTALKK--KGVKVTLAIGGW-NDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPK-CWQVDCK 1275 (1490)
Q Consensus 1200 ~~~~~~i~~~k~--~g~KvllsiGG~-~~s~~~~f~~~~~~~~~r~~fi~si~~~l~~~g~DGIDIDwE~P~-~~~~~~~ 1275 (1490)
..+.+.++.+++ ....++++|.|. ... -...++..+++.|+|+|||+.-.|. ....+..
T Consensus 84 ~~~~~~~~~~~~~~~~~p~i~si~g~~~~~-----------------~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g 146 (420)
T PRK08318 84 EVNLREIRRVKRDYPDRALIASIMVECNEE-----------------EWKEIAPLVEETGADGIELNFGCPHGMSERGMG 146 (420)
T ss_pred HHHHHHHHHHHhhCCCceEEEEeccCCCHH-----------------HHHHHHHHHHhcCCCEEEEeCCCCCCccccCCc
Q ss_pred CCCccchhhHHHHHHHHHHhcCCCCcEEEEEeCCC
Q psy10300 1276 QGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310 (1490)
Q Consensus 1276 ~~~~~d~~~~~~ll~eLr~~l~~~~~~ls~av~~~ 1310 (1490)
..-..+.+.+..+++.+++..+ .-|++-+.|.
T Consensus 147 ~~~~~~~~~~~~i~~~v~~~~~---~Pv~vKl~p~ 178 (420)
T PRK08318 147 SAVGQVPELVEMYTRWVKRGSR---LPVIVKLTPN 178 (420)
T ss_pred ccccCCHHHHHHHHHHHHhccC---CcEEEEcCCC
No 268
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=20.01 E-value=2.6e+02 Score=32.93 Aligned_cols=63 Identities=19% Similarity=0.234 Sum_probs=38.5
Q ss_pred HHHHHHHHhcCCcEEEEEEcCcCCCCCcchhhh----------------------------hcCHHHHHHHHHHHHHHHH
Q psy10300 1202 FYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRL----------------------------VNSQQARSKFIAHVVNFIL 1253 (1490)
Q Consensus 1202 ~~~~i~~~k~~g~KvllsiGG~~~s~~~~f~~~----------------------------~~~~~~r~~fi~si~~~l~ 1253 (1490)
..+.+..+|+.|+|+++.+-=.-...+..|... +.+++.|+=+. +.++-+.
T Consensus 68 ~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~-~~~~~~~ 146 (308)
T cd06593 68 PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYK-DKLKPLL 146 (308)
T ss_pred HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHH-HHHHHHH
Confidence 356677888889998886531100000111111 35778886555 4555566
Q ss_pred HcCCCeEEEeec
Q psy10300 1254 EHNFDGLDLDWE 1265 (1490)
Q Consensus 1254 ~~g~DGIDIDwE 1265 (1490)
++|+||+-+|+-
T Consensus 147 ~~Gid~~~~D~~ 158 (308)
T cd06593 147 DMGVDCFKTDFG 158 (308)
T ss_pred HhCCcEEecCCC
Confidence 789999999985
Done!