RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10300
(1490 letters)
>gnl|CDD|119351 cd02872, GH18_chitolectin_chitotriosidase, This conserved domain
family includes a large number of catalytically inactive
chitinase-like lectins (chitolectins) including YKL-39,
YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic
mammalian chitinase), as well as catalytically active
chitotriosidases. The conserved domain is an
eight-stranded alpha/beta barrel fold belonging to the
family 18 glycosyl hydrolases. The fold has a pronounced
active-site cleft at the C-terminal end of the
beta-barrel. The chitolectins lack a key active site
glutamate (the proton donor required for hydrolytic
activity) but retain highly conserved residues involved
in oligosaccharide binding. Chitotriosidase is a
chitinolytic enzyme expressed in maturing macrophages,
which suggests that it plays a part in antimicrobial
defense. Chitotriosidase hydrolyzes chitotriose, as well
as colloidal chitin to yield chitobiose and is therefore
considered an exochitinase. Chitotriosidase occurs in two
major forms, the large form being converted to the small
form by either RNA or post-translational processing.
Although the small form, containing the chitinase domain
alone, is sufficient for the chitinolytic activity, the
additional C-terminal chitin-binding domain of the large
form plays a role in processing colloidal chitin. The
chitotriosidase gene is nonessential in humans, as about
35% of the population are heterozygous and 6% homozygous
for an inactivated form of the gene. HCGP39 is a 39-kDa
human cartilage glycoprotein thought to play a role in
connective tissue remodeling and defense against
pathogens.
Length = 362
Score = 504 bits (1299), Expect = e-166
Identities = 173/352 (49%), Positives = 229/352 (65%), Gaps = 15/352 (4%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYE 1204
+VCYFTNWA YR GK++P +ID LCTH+IY FA L+ D +I D W D+D YE
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIIL-DEWNDIDLGLYE 59
Query: 1205 KVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDL 1262
+ ALK+K +K LAIGGWN + K+S + S + R FI + F+ ++ FDGLDL
Sbjct: 60 RFNALKEKNPNLKTLLAIGGWNFGSA-KFSAMAASPENRKTFIKSAIAFLRKYGFDGLDL 118
Query: 1263 DWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD--LLLSAAVSPSKAVIDNAYDI 1320
DWEYP GP DK+ F L+KELR AF P LLL+AAVS K ID AYDI
Sbjct: 119 DWEYPGQRG-----GPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSAGKETIDAAYDI 173
Query: 1321 PVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTT--PTFNANYSLHYWVSHGADR 1378
P +S+ LD+I+VMTYD+HG W+ TGH +P+YA DT N +Y++ YW+S GA
Sbjct: 174 PEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPP 233
Query: 1379 KKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVV 1438
+K++ G+P YG+SFTLA + G+ + G AG TR GFLAYYEIC+ K GW V
Sbjct: 234 EKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEF-LKSGWTV 292
Query: 1439 VRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
V D +++ PYA+KG+QWVG+DD+ I K +++K LGGAM+W++DLDDF
Sbjct: 293 VWDDEQK-VPYAYKGNQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343
Score = 389 bits (1003), Expect = e-124
Identities = 135/272 (49%), Positives = 177/272 (65%), Gaps = 13/272 (4%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYE 811
+VCYFTNWA YRPG GK+VPE+I LCTHI+Y FA L+ + II D W D D YE
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIIL-DEWNDIDLGLYE 59
Query: 812 RVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDL 869
R LK+K +K LAIGGWN K+S + S R+ FI+ + FL KY FDGLDL
Sbjct: 60 RFNALKEKNPNLKTLLAIGGWNFG-SAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDL 118
Query: 870 DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH--GLLLSAAVSPSKQVINAAYDV 927
DWEYP GP DKE+F ++EL +AF+P LLL+AAVS K+ I+AAYD+
Sbjct: 119 DWEYPGQRG-----GPPEDKENFVTLLKELREAFEPEAPRLLLTAAVSAGKETIDAAYDI 173
Query: 928 KALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYWMKKGAPS 985
+S+ LD+I+VMTYD+HG W+ TGH +PLY D D Y N ++ + YW+ KGAP
Sbjct: 174 PEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPP 233
Query: 986 RKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
KLV+G+P YG++F+LA+ ++ G+ A A G G
Sbjct: 234 EKLVLGIPTYGRSFTLASPSNTGVGAPASGPG 265
Score = 305 bits (783), Expect = 4e-93
Identities = 125/379 (32%), Positives = 198/379 (52%), Gaps = 34/379 (8%)
Query: 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIP-EDLEYDVIKGGY 184
VVCY + YR F +N+ P +CTH+IYA+A ++P +I E + D G Y
Sbjct: 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDID--LGLY 58
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F LKE NP LK LA+ + F ++ + E+R FI S + Y FDGLDL
Sbjct: 59 ERFNALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDL 118
Query: 239 NVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLT-----SPGVIDRKT 293
+ + P +D + +F T ++EL +L LT ID
Sbjct: 119 DWEYPGQRGGPPED-------KENFVTLLKELREAFEPEAPRLLLTAAVSAGKETIDAA- 170
Query: 294 SLVDISVVAPLVDLILLKSFN----NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAV 349
DI ++ +D I + +++ + + P+ + + + N++ A+
Sbjct: 171 --YDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSA-----DTGDQKYLNVDYAI 223
Query: 350 YNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVC 409
W+ KGA PE++++GIP +G+S+ L + S G+GA GPGT G YT+ G+LA++E+C
Sbjct: 224 KYWLSKGAPPEKLVLGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEIC 283
Query: 410 NKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDF 469
K + D P+ K ++W+ Y++ +SI K+ Y+K + LGGAM+W++DLDDF
Sbjct: 284 EFLKSGWTVVWDDEQKVPYAYKGNQWVGYDDEESIALKVQYLKSKGLGGAMVWSIDLDDF 343
Query: 470 RGFCGQ-KYPLLSAVVSNL 487
RG CGQ KYPLL+A+ L
Sbjct: 344 RGTCGQGKYPLLNAINRAL 362
>gnl|CDD|214753 smart00636, Glyco_18, Glyco_18 domain.
Length = 334
Score = 382 bits (983), Expect = e-121
Identities = 136/355 (38%), Positives = 198/355 (55%), Gaps = 31/355 (8%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
++V YFTNW Y G + DI + TH+IY FA +D D + D WAD+ N +
Sbjct: 1 RVVGYFTNWGVY---GRNFPVDDIPASKLTHIIYAFANIDPD-GTVTIGDEWADIGN--F 54
Query: 1204 EKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ ALKKK G+KV L+IGGW +S + +S +++ +R KFI +V+F+ ++ FDG+D
Sbjct: 55 GQLKALKKKNPGLKVLLSIGGWTES--DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGID 112
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-----PHDLLLSAAVSPSKAVIDN 1316
+DWEYP D++ + L+KELR A + LL+ AV ID
Sbjct: 113 IDWEYPGGRG--------DDRENYTALLKELREALDKEGAEGKGYLLTIAVPAGPDKIDK 164
Query: 1317 AYD-IPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHG 1375
Y +P +++ LD+I++MTYD+HG W TGH AP+YA P D +N +Y++ Y++ G
Sbjct: 165 GYGDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDPEK-YNVDYAVKYYLCKG 223
Query: 1376 ADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDG 1435
K++ G+P YG+ +TL D + NG + G A G T G + Y EIC + G
Sbjct: 224 VPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---G 280
Query: 1436 WVVVRDRKRRIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
VV D + PYA+ QWV +DD I KA++VK LGG MIW LD D
Sbjct: 281 ATVVYDDTAK-APYAYNPGTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334
Score = 301 bits (774), Expect = 3e-92
Identities = 97/273 (35%), Positives = 152/273 (55%), Gaps = 21/273 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
++V YFTNW Y + +DI THI+Y FA +D + + D WAD N
Sbjct: 1 RVVGYFTNWGVYGR---NFPVDDIPASKLTHIIYAFANIDP-DGTVTIGDEWADIGNFGQ 56
Query: 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLD 870
+ + K G+KV L+IGGW +S +S +++ +R++FI+ +V FL KY FDG+D+D
Sbjct: 57 LKALKKKNPGLKVLLSIGGWTES--DNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDID 114
Query: 871 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFK-----PHGLLLSAAVSPSKQVINAAY 925
WEYP D+E++ ++EL +A G LL+ AV I+ Y
Sbjct: 115 WEYPGGR--------GDDRENYTALLKELREALDKEGAEGKGYLLTIAVPAGPDKIDKGY 166
Query: 926 D-VKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAP 984
+ A+++ LD+I++MTYD+HG W TGH APLY P D +N ++ + Y++ KG P
Sbjct: 167 GDLPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP-EKYNVDYAVKYYLCKGVP 225
Query: 985 SRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
KLV+G+P YG+ ++L + +++G A G
Sbjct: 226 PSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPA 258
Score = 186 bits (475), Expect = 4e-52
Identities = 100/356 (28%), Positives = 161/356 (45%), Gaps = 35/356 (9%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
+VV Y Y F V ++ TH+IYA+A IDP + D D+ G
Sbjct: 1 RVVGYFTNWGVYGRN---FPVDDIPASKLTHIIYAFANIDP-DGTVTIGDEWADIGNFGQ 56
Query: 185 KSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLN 239
LK+ NP LKV L++ NF S+ SD SR FI S++ Y FDG+D++
Sbjct: 57 --LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDID 114
Query: 240 VKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRR-----NNYQLTLTSPGVIDRKTS 294
+ P +D ++ ++ ++EL L + Y LT+ P D+
Sbjct: 115 WEYPGGRGDDREN----------YTALLKELREALDKEGAEGKGYLLTIAVPAGPDKIDK 164
Query: 295 LVD-ISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWI 353
+ +A +D I L ++ D P N + N++ AV ++
Sbjct: 165 GYGDLPAIAKYLDFINLMTY--DFHGAWSNPTGHNA--PLYAGPGDPEKYNVDYAVKYYL 220
Query: 354 KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFK 413
KG P ++++GIPF+G+ + L + S G GA GP T G T G + + E+C
Sbjct: 221 CKGVPPSKLVLGIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLLG 280
Query: 414 DKTWRHFTDSNGEPFMVKKD--EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
+ D+ P+ +W++Y++ SI+ K +Y+KD+ LGG M+W LD D
Sbjct: 281 AT--VVYDDTAKAPYAYNPGTGQWVSYDDPRSIKAKADYVKDKGLGGVMIWELDAD 334
>gnl|CDD|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.
Length = 325
Score = 334 bits (857), Expect = e-104
Identities = 128/352 (36%), Positives = 179/352 (50%), Gaps = 33/352 (9%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+IV Y+T W Y + + DI +D TH+IY FA +D + DT D
Sbjct: 1 GRIVGYYTQWGNYGEG---FPLDDIPTDKLTHIIYAFANIDGNGTFGNNADTEDDGLKGC 57
Query: 1203 YEKVTALKKK---GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDG 1259
+E++ LKK GVKV L+IGGW S +S L + R F +++F+ ++ FDG
Sbjct: 58 FEQLKDLKKCQNPGVKVLLSIGGWTFS--GGFSLLASDDAKRKTFADSIIDFLKKYGFDG 115
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH---DLLLSAAVSPSKAVIDN 1316
+D+DWEYP DK + L+KELRAA LLSAAV ID
Sbjct: 116 IDIDWEYPGGKG--------DDKDNYTALLKELRAALKKEAKAGYLLSAAVPAGPDKIDG 167
Query: 1317 AYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA 1376
DI + + LD+I++MTYD+HG W TG AP+Y N +Y++ Y++ G
Sbjct: 168 -SDIAKIGKYLDFINLMTYDFHG-WSNITGPNAPLYDGSWQ-----NVDYAVQYYLKAGV 220
Query: 1377 DRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGW 1436
K++ G+P YG+ +TL + + NG G G T G L+Y EIC + K G
Sbjct: 221 PASKLVLGIPFYGRGWTLVNGSGNG-----GGAPAPGPGTWEGGILSYKEICALL-KSGA 274
Query: 1437 VVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
D PY +KG Q+V +DD I KA++VK LGG MIW+LD D
Sbjct: 275 GPGYD-DTAKAPYIYKGKQFVSYDDPRSIKAKAKYVKDKGLGGVMIWSLDQD 325
Score = 270 bits (693), Expect = 1e-81
Identities = 103/274 (37%), Positives = 148/274 (54%), Gaps = 26/274 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+IV Y+T W Y G + +DI TD THI+Y FA +D D+ D
Sbjct: 1 GRIVGYYTQWGNYGEG---FPLDDIPTDKLTHIIYAFANIDGNGTFGNNADTEDDGLKGC 57
Query: 810 YERVVTLKKK---GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866
+E++ LKK GVKV L+IGGW S G +S L + R+ F + ++ FL KY FDG
Sbjct: 58 FEQLKDLKKCQNPGVKVLLSIGGWTFS--GGFSLLASDDAKRKTFADSIIDFLKKYGFDG 115
Query: 867 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH---GLLLSAAVSPSKQVINA 923
+D+DWEYP DK+++ ++EL A K G LLSAAV I
Sbjct: 116 IDIDWEYPGGKG--------DDKDNYTALLKELRAALKKEAKAGYLLSAAVPAGPDKI-D 166
Query: 924 AYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGA 983
D+ + + LD+I++MTYD+HG W TG APLY+ N ++ + Y++K G
Sbjct: 167 GSDIAKIGKYLDFINLMTYDFHG-WSNITGPNAPLYDGSWQ-----NVDYAVQYYLKAGV 220
Query: 984 PSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
P+ KLV+G+P YG+ ++L N + +G A APG G
Sbjct: 221 PASKLVLGIPFYGRGWTLVNGSGNGGGAPAPGPG 254
Score = 183 bits (467), Expect = 3e-51
Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 37/353 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++V Y Y F + ++ TH+IYA+A ID D E D +KG
Sbjct: 1 GRIVGYYTQWGNYGE---GFPLDDIPTDKLTHIIYAFANIDGNGTFGNNADTEDDGLKGC 57
Query: 184 YKSFLGLKEA-NPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
++ LK+ NP +KV L++ F + SD R F S+++ Y FDG+D
Sbjct: 58 FEQLKDLKKCQNPGVKVLLSIGGWTFSGGFSLLASDDAKRKTFADSIIDFLKKYGFDGID 117
Query: 238 LNVKDPALNDEDDDDLESIANERSDFSTFIQELSS---TLRRNNYQLTLTSPGVIDRKTS 294
++ + P +D + +++ ++EL + + Y L+ P D K
Sbjct: 118 IDWEYPGGKGDD----------KDNYTALLKELRAALKKEAKAGYLLSAAVPAGPD-KID 166
Query: 295 LVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIK 354
DI+ + +D I L +++ + P P + Q N++ AV ++K
Sbjct: 167 GSDIAKIGKYLDFINLMTYDFHGWSNITGPNAPLYDGSWQ---------NVDYAVQYYLK 217
Query: 355 KGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKD 414
G ++++GIPF+G+ + L N S G GA GPGT G L++ E+C K
Sbjct: 218 AGVPASKLVLGIPFYGRGWTLVNGSGNGGGAPAPGPGTWE-----GGILSYKEICALLKS 272
Query: 415 KTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
+ D+ P++ K ++++Y++ SI+ K Y+KD+ LGG M+W+LD D
Sbjct: 273 GAGPGYDDTAKAPYIYKGKQFVSYDDPRSIKAKAKYVKDKGLGGVMIWSLDQD 325
>gnl|CDD|119365 cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18)
type II chitinases hydrolyze chitin, an abundant polymer
of N-acetylglucosamine and have been identified in
bacteria, fungi, insects, plants, viruses, and protozoan
parasites. The structure of this domain is an
eight-stranded alpha/beta barrel with a pronounced
active-site cleft at the C-terminal end of the
beta-barrel.
Length = 322
Score = 230 bits (588), Expect = 3e-67
Identities = 108/370 (29%), Positives = 167/370 (45%), Gaps = 74/370 (20%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPS-DIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
+V YFTNW Y G Y + DI +D TH+ Y FA +D D V+ D AD +
Sbjct: 1 VVGYFTNWGIY---GRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSV 57
Query: 1204 EKVT---------------ALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIA 1246
+ LK+K +K+ L+IGGW S G +S ++ +R+KF
Sbjct: 58 DGGADTDDQPLKGNFGQLRKLKQKNPHLKILLSIGGWTWSGG--FSDAAATEASRAKFAD 115
Query: 1247 HVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN------PHD 1300
V+FI ++ FDG+D+DWEYP DK+ F L+KELR A +
Sbjct: 116 SAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRK 175
Query: 1301 LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1360
LL+ A +D ++ +++ LD+I++MTYD+HG W TGH + +YA P D
Sbjct: 176 YLLTIAAPAGPDKLDKL-EVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPG 234
Query: 1361 TFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARG 1420
++ + +++Y++S G +K++ G+P YG RG
Sbjct: 235 GYSVDAAVNYYLSAGVPPEKLVLGVPFYG-----------------------------RG 265
Query: 1421 FLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLG 1478
+ G+ D + PY + ++ +DD I KA++VK LG
Sbjct: 266 W------------TGYTRYWDEVAK-APYLYNPSTKTFISYDDPRSIKAKADYVKDKGLG 312
Query: 1479 GAMIWALDLD 1488
G M W L D
Sbjct: 313 GVMFWELSGD 322
Score = 208 bits (531), Expect = 1e-59
Identities = 89/271 (32%), Positives = 141/271 (52%), Gaps = 28/271 (10%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADF------ 805
+V YFTNW Y G+ +V +DI D THI Y FA +D + ++ + D AD
Sbjct: 1 VVGYFTNWGIY--GRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVD 58
Query: 806 ---------DNRFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEH 854
+ ++ LK+K +K+ L+IGGW + G +S + +R +F +
Sbjct: 59 GGADTDDQPLKGNFGQLRKLKQKNPHLKILLSIGGW--TWSGGFSDAAATEASRAKFADS 116
Query: 855 VVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL------ 908
V F+ KY FDG+D+DWEYP + DKE+F L ++EL +A G
Sbjct: 117 AVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPEDKENFTLLLKELREALDALGAETGRKY 176
Query: 909 LLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFY 968
LL+ A ++ +V +++ LD+I++MTYD+HG W TGH + LY P D
Sbjct: 177 LLTIAAPAGPDKLDKL-EVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADPPGG 235
Query: 969 FNANFTMNYWMKKGAPSRKLVMGMPMYGQAF 999
++ + +NY++ G P KLV+G+P YG+ +
Sbjct: 236 YSVDAAVNYYLSAGVPPEKLVLGVPFYGRGW 266
Score = 115 bits (290), Expect = 1e-27
Identities = 78/380 (20%), Positives = 142/380 (37%), Gaps = 96/380 (25%)
Query: 126 VVCYVEAKSAYRHRPATFNVKNVIP--QICTHVIYAYAAIDP-----------VSRALIP 172
VV Y Y + V + IP ++ TH+ YA+A ID A
Sbjct: 1 VVGYFTNWGIY---GRNYFVTDDIPADKL-THINYAFADIDGDGGVVTSDDEAADEAAQS 56
Query: 173 EDLEYDVIKGGYKSFLG----LKEANPELKVYLAV----KS-NFVSITSDRESRLNFISS 223
D D K G LK+ NP LK+ L++ S F + SR F S
Sbjct: 57 VDGGADTDDQPLKGNFGQLRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADS 116
Query: 224 VLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTL------RRN 277
++ Y FDG+D++ + P + ++ +F+ ++EL L
Sbjct: 117 AVDFIRKYGFDGIDIDWEYP--GSGGAPGNVARPEDKENFTLLLKELREALDALGAETGR 174
Query: 278 NYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF--------NNDHMDDEVVPVKPNT 329
Y LT+ +P K ++++ +A +D I L ++ H + +
Sbjct: 175 KYLLTIAAPAG-PDKLDKLEVAEIAKYLDFINLMTYDFHGAWSNTTGHHS----NLYASP 229
Query: 330 KVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKG 389
++++AV ++ G PE++++G+PF+G+ + +
Sbjct: 230 ADP-------PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTGYT------------ 270
Query: 390 PGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKD--EWITYENNDSIRRK 447
R++ + P++ +I+Y++ SI+ K
Sbjct: 271 ----------------------------RYWDEVAKAPYLYNPSTKTFISYDDPRSIKAK 302
Query: 448 MNYIKDRHLGGAMLWTLDLD 467
+Y+KD+ LGG M W L D
Sbjct: 303 ADYVKDKGLGGVMFWELSGD 322
>gnl|CDD|119352 cd02873, GH18_IDGF, The IDGF's (imaginal disc growth factors) are a
family of growth factors identified in insects that
include at least five members, some of which are encoded
by genes in a tight cluster. The IDGF's have an
eight-stranded alpha/beta barrel fold and are related to
the glycosyl hydrolase family 18 (GH18) chitinases, but
they have an amino acid substitution known to abolish
chitinase catalytic activity. IDGFs may have evolved from
chitinases to gain new functions as growth factors,
interacting with cell surface glycoproteins involved in
growth-promoting processes.
Length = 413
Score = 231 bits (590), Expect = 2e-66
Identities = 120/401 (29%), Positives = 195/401 (48%), Gaps = 61/401 (15%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDL--CTHVIYGFAVLDTDQLVIKPHDTWADLDNK 1201
K+VCY+ + ++ R+ K D++ L CTH++YG+A +D D IK + DLD
Sbjct: 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKS 60
Query: 1202 FYEKVTALKKK--GVKVTLAIGGWNDS----AGNKYSRLVNSQQARSKFIAHVVNFILEH 1255
Y +T+LK+K +KV L++GG D+ KY L+ S ++R+ FI + + +
Sbjct: 61 HYRAITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTY 120
Query: 1256 NFDGLDLDWEYPK------------CWQ-----------VDCKQGPASDKQGFADLIKEL 1292
FDGLDL W++PK W VD K A K+ F L++EL
Sbjct: 121 GFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDEKA--AEHKEQFTALVREL 178
Query: 1293 RAAFNPHDLLLSAAVSP---SKAVIDNAYDIPVMSENLDWISVMTYDYHG-QWDKKTGH- 1347
+ A P LLL+ V P S +D+P ++ N+D++++ T+D+ + + +
Sbjct: 179 KNALRPDGLLLTLTVLPHVNSTWY----FDVPAIANNVDFVNLATFDFLTPERNPEEADY 234
Query: 1348 VAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTL-ADKNKNGL--NS 1404
AP+Y + P N +Y + YW++ G K+ G+ YG+++ L D G+
Sbjct: 235 TAPIYE-LYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVL 293
Query: 1405 QTYGGAEAGENTRARGFLAYYEICDKIQKDGWVV--------VRDRKRRIGPYAF----- 1451
+T G AG T+ G L++ EIC K+ + V D +R G YA+
Sbjct: 294 ETDGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADE 353
Query: 1452 KGDQ--WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G+ WV ++D +KA + K LGG ++ L LDDF
Sbjct: 354 NGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDF 394
Score = 180 bits (460), Expect = 3e-49
Identities = 100/320 (31%), Positives = 160/320 (50%), Gaps = 49/320 (15%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDL--CTHIVYGFAVLDSENLIIKAHDSWADFDNR 808
K+VCY+ + ++ R G K ED+ L CTH+VYG+A +D++ IK+ + D D
Sbjct: 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKS 60
Query: 809 FYERVVTLKKK--GVKVSLAIGGWNDSLGG----KYSRLVNSATARQRFIEHVVKFLLKY 862
Y + +LK+K +KV L++GG D+ KY L+ S+ +R FI L Y
Sbjct: 61 HYRAITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTY 120
Query: 863 QFDGLDLDWEYPT------------CWQ-----VNCDAGPDSD----KESFGLFVRELHQ 901
FDGLDL W++P W D+ D KE F VREL
Sbjct: 121 GFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKN 180
Query: 902 AFKPHGLLLSAAVSPSKQVINAA--YDVKALSESLDWISVMTYDYHG-QWDKKTGH-VAP 957
A +P GLLL+ V P +N+ +DV A++ ++D++++ T+D+ + + + AP
Sbjct: 181 ALRPDGLLLTLTVLPH---VNSTWYFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAP 237
Query: 958 LYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
+Y + + N ++ + YW+ +G P+ KL +G+ YG+A+ L + D G+ G
Sbjct: 238 IY-ELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKL--TKDSGI------TG 288
Query: 1018 VHPLLSTITEVLGHGPGGNY 1037
V P+L T G GP G
Sbjct: 289 VPPVLET----DGPGPAGPQ 304
Score = 174 bits (444), Expect = 3e-47
Identities = 118/423 (27%), Positives = 186/423 (43%), Gaps = 70/423 (16%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIP--QICTHVIYAYAAIDPVSRALIPEDLEYDVIKG 182
++VCY ++KS R A +++++ P Q CTH++Y YA ID + + + + D+ K
Sbjct: 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKS 60
Query: 183 GYKSFLGLKEANPELKVYLAVKSN-----------FVSITSDRESRLNFISSVLEMFDMY 231
Y++ LK P LKV L+V + ++ + ESR FI+S + Y
Sbjct: 61 HYRAITSLKRKYPHLKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTY 120
Query: 232 KFDGLDLNVKDPALNDE--DDDDLESI------------------ANERSDFSTFIQELS 271
FDGLDL + P N S A + F+ ++EL
Sbjct: 121 GFDGLDLAWQFPK-NKPKKVRGTFGSAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELK 179
Query: 272 STLRRNNYQLTLTS-PGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTK 330
+ LR + LTLT P V T D+ +A VD + L +F D + E P + +
Sbjct: 180 NALRPDGLLLTLTVLPHV--NSTWYFDVPAIANNVDFVNLATF--DFLTPERNPEEADYT 235
Query: 331 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSE---YGLGATV 387
I +N++ V W+ +G ++ +GI +G++++L S
Sbjct: 236 APIYELYERNPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLET 295
Query: 388 KGPGTEGKYTQMPGYLAFFEVCNKFK----------------DKTWRHFT------DSNG 425
GPG G T+ PG L++ E+C+K D T R + D NG
Sbjct: 296 DGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENG 355
Query: 426 EPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC-GQKYPLLSAVV 484
E + W++YE+ D+ K Y K + LGG L+ L LDDFRG C G K+P+L +
Sbjct: 356 EHGI-----WVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDFRGQCTGDKFPILRSAK 410
Query: 485 SNL 487
L
Sbjct: 411 YRL 413
>gnl|CDD|225862 COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism].
Length = 441
Score = 184 bits (470), Expect = 2e-50
Identities = 106/397 (26%), Positives = 169/397 (42%), Gaps = 58/397 (14%)
Query: 1141 DEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFA------------VLDTDQLV 1188
D+FK+V Y+T+W+ Y Y P DI D TH+ Y F V D L
Sbjct: 36 DQFKVVGYYTSWSQY--DRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALY 93
Query: 1189 IKP------HDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQA 1240
P D W+D + + LK +K ++IGGW+DS G +S + +
Sbjct: 94 GVPNIEGVELDPWSDPLKGHFGALFDLKATYPDLKTLISIGGWSDSGG--FSDMAADDAS 151
Query: 1241 RSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAF---- 1296
R F V F+ + FDG+D+DWEYP G DK + L++ELR
Sbjct: 152 RENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKAG 211
Query: 1297 --NPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYAL 1354
+ L+ A SK ++ + +++ +D+I++MTYD+HG W++ GH A +Y
Sbjct: 212 VEDGRHYQLTIAAPASKDKLEGL-NHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGT 270
Query: 1355 PNDTTPT-----FNANYSLHYWVSHGAD----RKKVIFGMPMYGQSFTLADKNKNGLNSQ 1405
P D +A W+ G K++ GMP YG+ + D G
Sbjct: 271 PKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVD---GGSLGT 327
Query: 1406 TYGGAEAGENTRAR-----------GFLAYYEICD-KIQKDGWVVVRDRKRRIGPYAF-- 1451
G + +N+ + Y++ K+G+ D + PY +
Sbjct: 328 CPGLYQGLDNSGIPKGTWEAGNGDKDYGKAYDLDANNAGKNGYERYWDDVAKA-PYLYNP 386
Query: 1452 KGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLD 1488
+ ++ +DD + KAE+V N+LGG M W + D
Sbjct: 387 EKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423
Score = 162 bits (411), Expect = 1e-42
Identities = 90/297 (30%), Positives = 141/297 (47%), Gaps = 40/297 (13%)
Query: 747 DQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGF------------------AV 788
D FK+V Y+T+W+ Y + Y P DI D THI Y F A+
Sbjct: 35 DDQFKVVGYYTSWSQY--DRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAAL 92
Query: 789 LDSENLIIKAHDSWADFDNRFYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSAT 846
N+ D W+D + + LK +K ++IGGW+DS G +S +
Sbjct: 93 YGVPNIEGVELDPWSDPLKGHFGALFDLKATYPDLKTLISIGGWSDS--GGFSDMAADDA 150
Query: 847 ARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH 906
+R+ F + V+F+ Y FDG+D+DWEYP + G DK ++ L ++EL +
Sbjct: 151 SRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKDKANYVLLLQELRKKLDKA 210
Query: 907 GL------LLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYE 960
G+ L+ A SK + +++ +D+I++MTYD+HG W++ GH A LY
Sbjct: 211 GVEDGRHYQLTIAAPASKD-KLEGLNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYG 269
Query: 961 HPDD-----DFFYFNANFTMNYWMKKG----APSRKLVMGMPMYGQAFSLANSNDHG 1008
P D FY +A W+++G P KLV+GMP YG+ ++ + G
Sbjct: 270 TPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLG 326
Score = 93.6 bits (233), Expect = 8e-20
Identities = 83/411 (20%), Positives = 158/411 (38%), Gaps = 88/411 (21%)
Query: 122 TKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAI------------------ 163
+ +VV Y + S Y + ++ TH+ YA+ I
Sbjct: 36 DQFKVVGYYTSWSQYD--RQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALY 93
Query: 164 ---DPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAV----KSN-FVSITSDRE 215
+ L P D +KG + + LK P+LK +++ S F + +D
Sbjct: 94 GVPNIEGVELDPWS---DPLKGHFGALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDA 150
Query: 216 SRLNFISSVLEMFDMYKFDGLDL------NVKDPALNDEDDDDLESIANERSDFSTFIQE 269
SR NF S +E Y FDG+D+ + D D ++++ +QE
Sbjct: 151 SRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPKD--------KANYVLLLQE 202
Query: 270 LSSTLRR------NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHM 318
L L + +YQLT+ +P D K ++ + +A VD I + +++ N+
Sbjct: 203 LRKKLDKAGVEDGRHYQLTIAAPASKD-KLEGLNHAEIAQYVDYINIMTYDFHGAWNET- 260
Query: 319 DDEVVPVKPNTKVNIQVTSTIANFNNIESAV------YNWIKKGAR----PEQIIIGIPF 368
+ + + T N V +W+++G P ++++G+PF
Sbjct: 261 ------LGHHA--ALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPF 312
Query: 369 FGKSYRLFNRSEY--------GLGATVKGPGTEGKYTQMPGYLAFFEV-CNKFKDKTWRH 419
+G+ + + GL + GT Y +++ N +
Sbjct: 313 YGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNGDKDYGKAYDLDANNAGKNGYER 372
Query: 420 FTDSNGE-PFMV--KKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLD 467
+ D + P++ +K +I+Y++ S++ K Y+ D +LGG M W + D
Sbjct: 373 YWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGD 423
>gnl|CDD|119349 cd00598, GH18_chitinase-like, The GH18 (glycosyl hydrolase, family
18) type II chitinases hydrolyze chitin, an abundant
polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc)
which is a major component of the cell wall of fungi and
the exoskeleton of arthropods. Chitinases have been
identified in viruses, bacteria, fungi, protozoan
parasites, insects, and plants. The structure of the
GH18 domain is an eight-stranded beta/alpha barrel with
a pronounced active-site cleft at the C-terminal end of
the beta-barrel. The GH18 family includes
chitotriosidase, chitobiase, hevamine, zymocin-alpha,
narbonin, SI-CLP (stabilin-1 interacting chitinase-like
protein), IDGF (imaginal disc growth factor), CFLE
(cortical fragment-lytic enzyme) spore hydrolase, the
type III and type V plant chitinases, the
endo-beta-N-acetylglucosaminidases, and the
chitolectins. The GH85 (glycosyl hydrolase, family 85)
ENGases (endo-beta-N-acetylglucosaminidases) are closely
related to the GH18 chitinases and are included in this
alignment model.
Length = 210
Score = 168 bits (428), Expect = 2e-47
Identities = 69/194 (35%), Positives = 99/194 (51%), Gaps = 19/194 (9%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYE 811
++CY+ W+ R P DI LCTHI+Y FA + S+ + D +
Sbjct: 1 VICYYDGWSSGRGPD----PTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEP---LKG 53
Query: 812 RVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDL 869
+ L K G+KV ++IGGW DS L + +R F +V FL Y FDG+D+
Sbjct: 54 ALEELASKKPGLKVLISIGGWTDS---SPFTLASDPASRAAFANSLVSFLKTYGFDGVDI 110
Query: 870 DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKA 929
DWEYP A +SD+E+F +REL A LL+ AV S + AYDV A
Sbjct: 111 DWEYP-------GAADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPA 163
Query: 930 LSESLDWISVMTYD 943
+ + +D+++VMTYD
Sbjct: 164 IGDYVDFVNVMTYD 177
Score = 164 bits (417), Expect = 6e-46
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 15/192 (7%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYE 1204
++CY+ W+ R P+DI LCTH+IY FA + +D + D + E
Sbjct: 1 VICYYDGWSSGR----GPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALE 56
Query: 1205 KVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDW 1264
++ + KK G+KV ++IGGW DS L + +R+ F +V+F+ + FDG+D+DW
Sbjct: 57 ELAS-KKPGLKVLISIGGWTDS---SPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDW 112
Query: 1265 EYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMS 1324
EYP SD++ F L++ELR+A + LL+ AV S + AYD+P +
Sbjct: 113 EYPG-------AADNSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPAIG 165
Query: 1325 ENLDWISVMTYD 1336
+ +D+++VMTYD
Sbjct: 166 DYVDFVNVMTYD 177
Score = 97.4 bits (243), Expect = 1e-22
Identities = 49/193 (25%), Positives = 88/193 (45%), Gaps = 20/193 (10%)
Query: 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYK 185
V+CY + S+ R + ++ +CTH+IYA+A I + D + +KG +
Sbjct: 1 VICYYDGWSSGRG----PDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALE 56
Query: 186 SFLGLKEANPELKVYLAV----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
P LKV +++ S+ ++ SD SR F +S++ Y FDG+D++ +
Sbjct: 57 EL---ASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANSLVSFLKTYGFDGVDIDWE 113
Query: 242 DPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVV 301
P D ++R +F T ++EL S L NY LT+ P D+ +
Sbjct: 114 YPGAAD---------NSDRENFITLLRELRSALGAANYLLTIAVPASYFDLGYAYDVPAI 164
Query: 302 APLVDLILLKSFN 314
VD + + +++
Sbjct: 165 GDYVDFVNVMTYD 177
Score = 40.8 bits (96), Expect = 0.002
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 443 SIRRKMNYIKDRHLGGAMLWTLDLD 467
S+ K Y K + LGG M+W LD D
Sbjct: 186 SLGAKAKYAKQKGLGGVMIWELDQD 210
Score = 32.3 bits (74), Expect = 1.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 1468 KAEFVKYNDLGGAMIWALDLD 1488
KA++ K LGG MIW LD D
Sbjct: 190 KAKYAKQKGLGGVMIWELDQD 210
>gnl|CDD|119358 cd02879, GH18_plant_chitinase_class_V, The class V plant chitinases
have a glycosyl hydrolase family 18 (GH18) domain, but
lack the chitin-binding domain present in other GH18
enzymes. The GH18 domain of the class V chitinases has
endochitinase activity in some cases and no catalytic
activity in others. Included in this family is a lectin
found in black locust (Robinia pseudoacacia) bark, which
binds chitin but lacks chitinase activity. Also included
is a chitinase-related receptor-like kinase (CHRK1) from
tobacco (Nicotiana tabacum), with an N-terminal GH18
domain and a C-terminal kinase domain, which is thought
to be part of a plant signaling pathway. The GH18 domain
of CHRK1 is expressed extracellularly where it binds
chitin but lacks chitinase activity.
Length = 299
Score = 155 bits (394), Expect = 1e-41
Identities = 99/349 (28%), Positives = 149/349 (42%), Gaps = 76/349 (21%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLD--TDQLVIKPHDTWADLDNKFYEKVTALKK 1211
W ++ PS+IDS L TH+ Y FA LD T ++VI ++ F E V K
Sbjct: 9 WP-AWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVI-SPSDESEFST-FTETVKR-KN 64
Query: 1212 KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQ 1271
VK L+IGG + ++ + + AR FI + ++ FDGLDLDWE+P
Sbjct: 65 PSVKTLLSIGGGGSDSSA-FAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS--- 120
Query: 1272 VDCKQGPASDKQGFADLIKELRAAFNPHD-------LLLSAAVSPSKAVIDNA----YDI 1320
+ + F L++E RAA LLL+AAV S + + Y I
Sbjct: 121 ------SQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPI 174
Query: 1321 PVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1380
+++NLDW++VM YDY+G W+ T A A D + +Y + W+ G KK
Sbjct: 175 EAINKNLDWVNVMAYDYYGSWESNTTGPA---AALYDPNSNVSTDYGIKSWIKAGVPAKK 231
Query: 1381 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 1440
++ G+P+YG+++TL D T +
Sbjct: 232 LVLGLPLYGRAWTLYDT--------TTVSS------------------------------ 253
Query: 1441 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
Y + G W+G+DD I K ++ K L G WA+ DD
Sbjct: 254 --------YVYAGTTWIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDD 294
Score = 147 bits (374), Expect = 4e-39
Identities = 84/260 (32%), Positives = 136/260 (52%), Gaps = 36/260 (13%)
Query: 761 WYRPGKGKYVPEDIRTDLCTHIVYGFAVLDS---ENLIIKAHDSW-ADFDNRFYERVVTL 816
W ++ P +I + L TH+ Y FA LD E +I + +S + F V
Sbjct: 9 WP-AWSEEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISPSDESEFSTFTE-----TVKR 62
Query: 817 KKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTC 876
K VK L+IGG ++ + + TAR+ FI +K KY FDGLDLDWE+P+
Sbjct: 63 KNPSVKTLLSIGGGGSD-SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPS- 120
Query: 877 WQVNCDAGPDSDKESFGLFVRELHQAFKPH-------GLLLSAAVSPSKQVI----NAAY 925
+ E+FG + E A K LLL+AAV S + + +Y
Sbjct: 121 --------SQVEMENFGKLLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSY 172
Query: 926 DVKALSESLDWISVMTYDYHGQWDKK-TGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAP 984
++A++++LDW++VM YDY+G W+ TG A LY+ + + ++ + W+K G P
Sbjct: 173 PIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPNSN----VSTDYGIKSWIKAGVP 228
Query: 985 SRKLVMGMPMYGQAFSLANS 1004
++KLV+G+P+YG+A++L ++
Sbjct: 229 AKKLVLGLPLYGRAWTLYDT 248
Score = 72.0 bits (177), Expect = 3e-13
Identities = 69/334 (20%), Positives = 132/334 (39%), Gaps = 85/334 (25%)
Query: 154 THVIYAYAAIDPVSRAL-IPEDLEYDVIKGGYKSFLG-LKEANPELKVYLAV------KS 205
TH+ YA+A +DP + + I E + + +F +K NP +K L++ S
Sbjct: 27 THLFYAFADLDPSTYEVVISPSDESE-----FSTFTETVKRKNPSVKTLLSIGGGGSDSS 81
Query: 206 NFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFST 265
F ++ SD +R FI+S +++ Y FDGLDL+ + P ++E +F
Sbjct: 82 AFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFP----SSQVEME-------NFGK 130
Query: 266 FIQELSSTLRR-----NNYQLTLTSPGVIDRKTSLVDISVVAPL------VDLILLKSFN 314
++E + ++ L LT+ L D SV P+ +D + + +++
Sbjct: 131 LLEEWRAAVKDEARSSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYD 190
Query: 315 NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYR 374
+ E P + ++ ++ + +WIK G +++++G+P +G+++
Sbjct: 191 Y-YGSWESNTTGPAAALYDPNSNVSTDY-----GIKSWIKAGVPAKKLVLGLPLYGRAWT 244
Query: 375 LFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDE 434
L++ T Y + T
Sbjct: 245 LYD------------TTTVSSYV--------------YAGTT------------------ 260
Query: 435 WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
WI Y++ SI K+ Y K + L G W + DD
Sbjct: 261 WIGYDDVQSIAVKVKYAKQKGLLGYFAWAVGYDD 294
>gnl|CDD|119357 cd02878, GH18_zymocin_alpha, Zymocin, alpha subunit. Zymocin is a
heterotrimeric enzyme that inhibits yeast cell cycle
progression. The zymocin alpha subunit has a chitinase
activity that is essential for holoenzyme action from the
cell exterior while the gamma subunit contains the
intracellular toxin responsible for G1 phase cell cycle
arrest. The zymocin alpha and beta subunits are thought
to act from the cell's exterior by docking to the cell
wall-associated chitin, thus mediating gamma-toxin
translocation. The alpha subunit has an eight-stranded
TIM barrel fold similar to that of family 18 glycosyl
hydrolases such as hevamine, chitolectin, and chitobiase.
Length = 345
Score = 129 bits (326), Expect = 3e-32
Identities = 98/361 (27%), Positives = 145/361 (40%), Gaps = 32/361 (8%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL--DTDQLVIKPHDTWADLDNK 1201
K + YF + R + ID+ TH+ + FA + D V + + +
Sbjct: 1 KNIAYFEAYNLDR-PCLNMDVTQIDTSKYTHIHFAFANITSDFSVDVSSVQEQF----SD 55
Query: 1202 FYEKVTALKKKGVKVTLAIGGWNDSAG-NKYSRLVN--SQQARSKFIAHVVNFILEHNFD 1258
F K KGVK L+ GGW+ S + Y + R F +VVNF+ ++N D
Sbjct: 56 F------KKLKGVKKILSFGGWDFSTSPSTYQIFRDAVKPANRDTFANNVVNFVNKYNLD 109
Query: 1259 GLDLDWEYPKCWQV-DCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNA 1317
G+D DWEYP + G D + + + +K L++ P LS A P+
Sbjct: 110 GVDFDWEYPGAPDIPGIPAGDPDDGKNYLEFLKLLKSKL-PSGKSLSIAA-PASYWYLKG 167
Query: 1318 YDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN------DTTPTFNANYSLHYW 1371
+ I M++ +D+I MTYD HGQWD +P N + T T +A L
Sbjct: 168 FPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNCLRSHVNKTETLDA---LSMI 224
Query: 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1431
G KV+ G+ YG+SF +AD G G E R Y I +
Sbjct: 225 TKAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIE 284
Query: 1432 QKDGWVVVRDRKRRIGPYA----FKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDL 1487
D R + + DQWV + A + E+ K + GG WA+DL
Sbjct: 285 IIDISKSKNKRWYDTDSDSDILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDL 344
Query: 1488 D 1488
Sbjct: 345 Q 345
Score = 101 bits (254), Expect = 6e-23
Identities = 82/275 (29%), Positives = 118/275 (42%), Gaps = 44/275 (16%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDS--ENLIIKAHDSWADFDNR 808
K + YF + RP I T THI + FA + S + + ++DF
Sbjct: 1 KNIAYFEAYNLDRPCL-NMDVTQIDTSKYTHIHFAFANITSDFSVDVSSVQEQFSDF--- 56
Query: 809 FYERVVTLKKKGVKVSLAIGGWNDSLG-GKYSRL---VNSATARQRFIEHVVKFLLKYQF 864
K KGVK L+ GGW+ S Y V A R F +VV F+ KY
Sbjct: 57 -------KKLKGVKKILSFGGWDFSTSPSTYQIFRDAVKPAN-RDTFANNVVNFVNKYNL 108
Query: 865 DGLDLDWEYPTCWQVNCDAGPD---------SDKESFGLFVRELHQAFKPHGLLLSAAVS 915
DG+D DWEYP PD D +++ F++ L P G LS A
Sbjct: 109 DGVDFDWEYP--------GAPDIPGIPAGDPDDGKNYLEFLKLLKSKL-PSGKSLSIAA- 158
Query: 916 PSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTM 975
P+ + +K +++ +D+I MTYD HGQWD +P P + + N T
Sbjct: 159 PASYWYLKGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASP--GCPAGNCLRSHVNKTE 216
Query: 976 NYW---M--KKGAPSRKLVMGMPMYGQAFSLANSN 1005
M K G PS K+V+G+ YG++F +A+
Sbjct: 217 TLDALSMITKAGVPSNKVVVGVASYGRSFKMADPG 251
Score = 48.1 bits (115), Expect = 2e-05
Identities = 30/123 (24%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 354 KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPG---TEGKYTQMPGYLAFFEVCN 410
K G ++++G+ +G+S+++ + G G T GPG G+ T GY A E+
Sbjct: 226 KAGVPSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEI 285
Query: 411 KFKDKT-----WRHFTDSNGEPFMV-KKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTL 464
K+ + +DS+ +V D+W+ Y + + ++ + K + GG W +
Sbjct: 286 IDISKSKNKRWYDTDSDSD---ILVYDDDQWVAYMSPATKAARIEWYKGLNFGGTSDWAV 342
Query: 465 DLD 467
DL
Sbjct: 343 DLQ 345
>gnl|CDD|119353 cd02874, GH18_CFLE_spore_hydrolase, Cortical fragment-lytic enzyme
(CFLE) is a peptidoglycan hydrolase involved in
bacterial endospore germination. CFLE is expressed as
an inactive preprotein (called SleB) in the forespore
compartment of sporulating cells. SleB translocates
across the forespore inner membrane and is deposited as
a mature enzyme in the cortex layer of the spore. As
part of a sensory mechanism capable of initiating
germination, CFLE degrades a spore-specific
peptidoglycan constituent called muramic-acid
delta-lactam that comprises the outer cortex. CFLE has
a C-terminal glycosyl hydrolase family 18 (GH18)
catalytic domain as well as two N-terminal LysM
peptidoglycan-binding domains. In addition to SleB,
this family includes YaaH, YdhD, and YvbX from Bacillus
subtilis.
Length = 313
Score = 103 bits (259), Expect = 8e-24
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 50/205 (24%)
Query: 810 YERVVTL-KKKGVKVSLAI-----GGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 863
ER++ K++GVK L I G ++ L ++++ ARQR I +++ KY
Sbjct: 47 DERLIEAAKRRGVKPLLVITNLTNGNFDSELA---HAVLSNPEARQRLINNILALAKKYG 103
Query: 864 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSK----- 918
+DG+++D+E V D+E++ F+REL P G LS AV P
Sbjct: 104 YDGVNIDFEN-----VPP-----EDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQF 153
Query: 919 QVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYW 978
+ AYD A+ + +D++ +MTYD+H + G VAP+ W
Sbjct: 154 GNWSGAYDYAAIGKIVDFVVLMTYDWHWRG-GPPGPVAPI------------------GW 194
Query: 979 MKK-------GAPSRKLVMGMPMYG 996
+++ P K+++G+P+YG
Sbjct: 195 VERVLQYAVTQIPREKILLGIPLYG 219
Score = 97.7 bits (244), Expect = 9e-22
Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 74/307 (24%)
Query: 1206 VTALKKKGVKVTLAIGGWNDS--AGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD 1263
+ A K++GVK L I + ++++ +AR + I +++ ++ +DG+++D
Sbjct: 51 IEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLINNILALAKKYGYDGVNID 110
Query: 1264 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDN-----AY 1318
+E P D++ + ++EL +P LS AV P + AY
Sbjct: 111 FENV----------PPEDREAYTQFLRELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAY 160
Query: 1319 DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPM--------YAL---PNDTTPTFNANYS 1367
D + + +D++ +MTYD+H + G VAP+ YA+ P
Sbjct: 161 DYAAIGKIVDFVVLMTYDWHWRG-GPPGPVAPIGWVERVLQYAVTQIP------------ 207
Query: 1368 LHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEI 1427
R+K++ G+P+YG +TL K G + T +A A+ + A
Sbjct: 208 ----------REKILLGIPLYGYDWTL--PYKKGGKASTISPQQAIN--LAKRYGA---- 249
Query: 1428 CDKIQKDGWVVVRDRKRRIGPYAFKGDQ-----WVGFDDQAMIHHKAEFVKYNDLGGAMI 1482
+IQ D + P+ D+ V F+D + K E K L G
Sbjct: 250 --EIQYD--------EEAQSPFFRYVDEQGRRHEVWFEDARSLQAKFELAKEYGLRGVSY 299
Query: 1483 WALDLDD 1489
W L L+D
Sbjct: 300 WRLGLED 306
Score = 56.5 bits (137), Expect = 4e-08
Identities = 54/276 (19%), Positives = 103/276 (37%), Gaps = 65/276 (23%)
Query: 209 SITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANE-RSDFSTFI 267
++ S+ E+R I+++L + Y +DG+++ D E++ E R ++ F+
Sbjct: 80 AVLSNPEARQRLINNILALAKKYGYDGVNI-------------DFENVPPEDREAYTQFL 126
Query: 268 QELSSTLRRNNYQLTLTS-PGVIDRKTSLV----DISVVAPLVDLILLKSFNNDHMDDEV 322
+ELS L Y L+ P + D + + +VD ++L +++
Sbjct: 127 RELSDRLHPAGYTLSTAVVPKTSADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWRGGPP 186
Query: 323 VPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYG 382
PV P V ++ AV I + E+I++GIP +G + Y
Sbjct: 187 GPVAPIGWVE----------RVLQYAV-TQIPR----EKILLGIPLYG---YDWT-LPYK 227
Query: 383 LGATVKGPGTEG------KYTQMPGYLAFFEVCNKFKDKTWRH----FTDSNGEPFMVKK 432
G + +Y Y D+ + + D G +
Sbjct: 228 KGGKASTISPQQAINLAKRYGAEIQY-----------DEEAQSPFFRYVDEQG------R 270
Query: 433 DEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
+ +E+ S++ K K+ L G W L L+D
Sbjct: 271 RHEVWFEDARSLQAKFELAKEYGLRGVSYWRLGLED 306
>gnl|CDD|119362 cd06545, GH18_3CO4_chitinase, The Bacteroides thetaiotaomicron
protein represented by pdb structure 3CO4 is an
uncharacterized bacterial member of the family 18
glycosyl hydrolases with homologs found in
Flavobacterium, Stigmatella, and Pseudomonas.
Length = 253
Score = 95.6 bits (238), Expect = 1e-21
Identities = 67/253 (26%), Positives = 103/253 (40%), Gaps = 44/253 (17%)
Query: 752 IVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSE-NLIIKAHDSWADFDNRFY 810
+V Y N+ I THI FA D+ L S
Sbjct: 1 VVGYLPNYDDLNALSPT-----IDFSKLTHINLAFANPDANGTLNANPVRS------ELN 49
Query: 811 ERVVTLKKKGVKV--SLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
V VK+ SLA G +++ +N R+ ++ ++ +++ Y DG+D
Sbjct: 50 SVVNAAHAHNVKILISLAGGS-----PPEFTAALNDPAKRKALVDKIINYVVSYNLDGID 104
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVK 928
+D E GPD + +F+R L+ A K G LL+AAVS A
Sbjct: 105 VDLE-----------GPDVTFGDYLVFIRALYAALKKEGKLLTAAVSSWNG---GAVSDS 150
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKG-APSRK 987
L+ D+I++M+YD G W ++P Y +A +NYW ++G A K
Sbjct: 151 TLA-YFDFINIMSYDATGPWWG---------DNPGQHSSYDDAVNDLNYWNERGLASKDK 200
Query: 988 LVMGMPMYGQAFS 1000
LV+G+P YG F
Sbjct: 201 LVLGLPFYGYGFY 213
Score = 88.7 bits (220), Expect = 3e-19
Identities = 67/273 (24%), Positives = 109/273 (39%), Gaps = 48/273 (17%)
Query: 1145 IVCYFTNWAW-YRQSGGKYLPSDIDSDLCTHVIYGFAVLDTD-QLVIKPHDTWADLDNKF 1202
+V Y N+ S ID TH+ FA D + L P ++L+
Sbjct: 1 VVGYLPNYDDLNALSPT------IDFSKLTHINLAFANPDANGTLNANP--VRSELN--- 49
Query: 1203 YEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDL 1262
V A VK+ +++ G + +++ +N R + ++N+++ +N DG+D+
Sbjct: 50 -SVVNAAHAHNVKILISLAG---GSPPEFTAALNDPAKRKALVDKIINYVVSYNLDGIDV 105
Query: 1263 DWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPV 1322
D E P D + I+ L AA LL+AAVS N +
Sbjct: 106 DLEGPDVTFGD-----------YLVFIRALYAALKKEGKLLTAAVSSW-----NGGAVSD 149
Query: 1323 MSENL-DWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHG-ADRKK 1380
+ D+I++M+YD G W P + +A L+YW G A + K
Sbjct: 150 STLAYFDFINIMSYDATGPWWGDN---------PGQHSSYDDAVNDLNYWNERGLASKDK 200
Query: 1381 VIFGMPMYGQSFTLAD----KNKNGLNSQTYGG 1409
++ G+P YG F +NK Q YGG
Sbjct: 201 LVLGLPFYGYGFYYNGIPTIRNKVAFAKQNYGG 233
Score = 38.6 bits (90), Expect = 0.017
Identities = 30/158 (18%), Positives = 59/158 (37%), Gaps = 30/158 (18%)
Query: 217 RLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRR 276
R + ++ Y DG+D+ DLE D+ FI+ L + L++
Sbjct: 84 RKALVDKIINYVVSYNLDGIDV-------------DLEGPDVTFGDYLVFIRALYAALKK 130
Query: 277 NNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVT 336
L + V V S +A D I + S++ P N
Sbjct: 131 EG---KLLTAAVSSWNGGAVSDSTLA-YFDFINIMSYDA---------TGPWWGDNPGQH 177
Query: 337 STIANFNNIESAVYNWIKKGARP-EQIIIGIPFFGKSY 373
S+ + + + W ++G +++++G+PF+G +
Sbjct: 178 SSYDDA---VNDLNYWNERGLASKDKLVLGLPFYGYGF 212
>gnl|CDD|119359 cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are
bacterial chitinases that hydrolyze the chitin core of
various asparagine (N)-linked glycans and glycoproteins.
The endo-beta-N-acetylglucosaminidases have a glycosyl
hydrolase family 18 (GH18) catalytic domain. Some
members also have an additional C-terminal glycosyl
hydrolase family 20 (GH20) domain while others have an
N-terminal domain of unknown function (pfam08522).
Members of this family include
endo-beta-N-acetylglucosaminidase S (EndoS) from
Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and
EndoH from Flavobacterium meningosepticum, and EndoE
from Enterococcus faecalis. EndoS is a secreted
endoglycosidase from Streptococcus pyogenes that
specifically hydrolyzes the glycan on human IgG between
two core N-acetylglucosamine residues. EndoE is a
secreted endoglycosidase, encoded by the ndoE gene in
Enterococcus faecalis, that hydrolyzes the glycan on
human RNase B.
Length = 255
Score = 69.3 bits (170), Expect = 1e-12
Identities = 39/148 (26%), Positives = 58/148 (39%), Gaps = 23/148 (15%)
Query: 1204 EKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD 1263
+ L+ KG KV L+I G + AG + S A + +V+ + ++ DG+D D
Sbjct: 55 TYIRPLQAKGTKVLLSILGNHLGAGFANN---LSDAAAKAYAKAIVDTVDKYGLDGVDFD 111
Query: 1264 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDN-----AY 1318
EY + F LIKELR P D LL ID +
Sbjct: 112 DEY---SGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLL---------TIDGYGQALSN 159
Query: 1319 DIPVMSENLDWISVMTYDYHGQWDKKTG 1346
D +S +D++ Y Y+G T
Sbjct: 160 DGEEVSPYVDYV---IYQYYGSSSSSTQ 184
Score = 55.5 bits (134), Expect = 5e-08
Identities = 32/144 (22%), Positives = 52/144 (36%), Gaps = 13/144 (9%)
Query: 816 LKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPT 875
L+ KG KV L+I G + G + S A + + + +V + KY DG+D D EY
Sbjct: 60 LQAKGTKVLLSILGNHLGAGFANN---LSDAAAKAYAKAIVDTVDKYGLDGVDFDDEY-- 114
Query: 876 CWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLD 935
+ E+F ++EL + P LL+ E
Sbjct: 115 -SGYGKNGTSQPSNEAFVRLIKELRKYMGPTDKLLTIDGYGQ-------ALSNDGEEVSP 166
Query: 936 WISVMTYDYHGQWDKKTGHVAPLY 959
++ + Y Y+G T
Sbjct: 167 YVDYVIYQYYGSSSSSTQRNWNTN 190
>gnl|CDD|226376 COG3858, COG3858, Predicted glycosyl hydrolase [General function
prediction only].
Length = 423
Score = 69.8 bits (171), Expect = 4e-12
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 31/192 (16%)
Query: 814 VTLKKKGVKVSLAIGGWNDSLGGKY----SRLVNSATARQRFIEHVVKFLLKYQFDGLDL 869
+ + +K I L+N+ TA+ R I +++ L + G+++
Sbjct: 154 EIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNI 213
Query: 870 DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVI-----NAA 924
D+E D+E + F+R++ A G +S AV+ + + A
Sbjct: 214 DFENVG----------PGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGA 263
Query: 925 YDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAP 984
YD AL + D++ +MTYD+H G VA + + Y + P
Sbjct: 264 YDYVALGKIADFVILMTYDWHYSGGPP-GPVASIGWVRK----------VIEYALTV-IP 311
Query: 985 SRKLVMGMPMYG 996
+ K++MG+P+YG
Sbjct: 312 AEKVMMGIPLYG 323
Score = 64.4 bits (157), Expect = 2e-10
Identities = 64/344 (18%), Positives = 125/344 (36%), Gaps = 64/344 (18%)
Query: 1173 THVIYGFAVLDTDQLVIK---PHDTWADLDNKFYEKV------------TALKKKGVKVT 1217
T +T +LV + P+ T+ DL + ++ + + +K
Sbjct: 105 TAYYAPRPPTETGELVRRHAGPYLTYVDLFSYHAQENGNLTETPNENVIEIAQCRKIKPV 164
Query: 1218 LAIGGWNDSAGNKY----SRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVD 1273
I N L+N++ A+++ I +++ + + G+++D+E
Sbjct: 165 PGISNGTRPGANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFE-------- 216
Query: 1274 CKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDN-----AYDIPVMSENLD 1328
D++ + D ++++R A + +S AV+ + + AYD + + D
Sbjct: 217 --NVGPGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIAD 274
Query: 1329 WISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMY 1388
++ +MTYD+H G VA + + Y ++ KV+ G+P+Y
Sbjct: 275 FVILMTYDWHYSGGPP-GPVASI-------GWVRK---VIEYALTVIPAE-KVMMGIPLY 322
Query: 1389 GQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEIC---DKIQKDGWVVVRDRKRR 1445
G +TL + Y A A A Y D + + D++ R
Sbjct: 323 GYDWTLPY------DPLGY-LARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGR 375
Query: 1446 IGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
V F+D K + +K L G W L +D
Sbjct: 376 --------YHEVWFEDARSFQTKLDLIKEYGLRGVSYWVLGQED 411
Score = 48.6 bits (116), Expect = 2e-05
Identities = 44/273 (16%), Positives = 98/273 (35%), Gaps = 52/273 (19%)
Query: 210 ITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANE-RSDFSTFIQ 268
+ ++ ++ I++++ + D + G+++ D E++ R ++ F++
Sbjct: 185 LLNNETAKNRLINNIITLLDARGYRGVNI-------------DFENVGPGDRELYTDFLR 231
Query: 269 ELSSTLRRNNYQLTL-----TSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVV 323
++ L Y +++ TS + D + + D ++L +++ +
Sbjct: 232 QVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYSGGPPG 291
Query: 324 PVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGL 383
PV V IE A+ E++++GIP +G Y L
Sbjct: 292 PVASIGWVR----------KVIEYAL-----TVIPAEKVMMGIPLYG--YDWT------L 328
Query: 384 GATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT----WRHFTDSNGEPFMVKKDEWITYE 439
G +A D T + ++ D G + + +E
Sbjct: 329 PYDPLGYLARAISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEG------RYHEVWFE 382
Query: 440 NNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF 472
+ S + K++ IK+ L G W L +D R +
Sbjct: 383 DARSFQTKLDLIKEYGLRGVSYWVLGQEDPRNW 415
>gnl|CDD|216601 pfam01607, CBM_14, Chitin binding Peritrophin-A domain. This
domain is called the Peritrophin-A domain and is found
in chitin binding proteins particularly peritrophic
matrix proteins of insects and animal chitinases. Copies
of the domain are also found in some baculoviruses.
Relevant references that describe proteins with this
domain include. It is an extracellular domain that
contains six conserved cysteines that probably form
three disulphide bridges. Chitin binding has been
demonstrated for a protein containing only two of these
domains.
Length = 53
Score = 59.8 bits (145), Expect = 2e-11
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 548 CVNGD--YLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNV-QC 597
C PDP DC + CS+G + +C L+++ CD+ NV C
Sbjct: 1 CEGRPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYPDNVVDC 53
Score = 56.3 bits (136), Expect = 4e-10
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 615 CQEGE--FAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWP 659
C+ P DC+KY C G V +C GL ++ + TCD+P
Sbjct: 1 CEGRPDGLYPDPGDCSKYYQCSNGKAVVFTCPAGLVFDPALGTCDYP 47
>gnl|CDD|119355 cd02876, GH18_SI-CLP, Stabilin-1 interacting chitinase-like protein
(SI-CLP) is a eukaryotic chitinase-like protein of
unknown function that interacts with the
endocytic/sorting transmembrane receptor stabilin-1 and
is secreted from the lysosome. SI-CLP has a glycosyl
hydrolase family 18 (GH18) domain but lacks a
chitin-binding domain. The catalytic amino acids of the
GH18 domain are not conserved in SI-CLP, similar to the
chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is
sorted to late endosomes and secretory lysosomes in
alternatively activated macrophages.
Length = 318
Score = 63.5 bits (155), Expect = 2e-10
Identities = 44/188 (23%), Positives = 73/188 (38%), Gaps = 28/188 (14%)
Query: 829 GWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW-QVNCDAGPDS 887
GW+ L+N R++ I+ +V K FDG+ L E W Q+ PD
Sbjct: 77 GWSYQD---LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVL--EV---WSQLAAYGVPDK 128
Query: 888 DKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAY-----DVKALSESLDWISVMTY 942
KE V L + L L + P ++ N D + L+ +D S+MTY
Sbjct: 129 RKELIQ-LVIHLGETLHSANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTY 187
Query: 943 DYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSR-KLVMGMPMYGQAFSL 1001
DY ++ G APL + + + + + R K+++G+ YG ++L
Sbjct: 188 DYSSP--QRPGPNAPLS--------WVRSC--LELLLPESGKKRAKILLGLNFYGNDYTL 235
Query: 1002 ANSNDHGL 1009
Sbjct: 236 PGGGGAIT 243
Score = 54.6 bits (132), Expect = 1e-07
Identities = 47/217 (21%), Positives = 82/217 (37%), Gaps = 47/217 (21%)
Query: 1197 DLDNKFYEKVTALKKKGVKVT--LAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILE 1254
D+D + E+V K +K+ + GW+ L+N +Q R K I +V +
Sbjct: 51 DIDKGWIEEVRK-ANKNIKILPRVLFEGWS---YQDLQSLLNDEQEREKLIKLLVTTAKK 106
Query: 1255 HNFDGLDLD-WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAV 1313
++FDG+ L+ W G ++ L+ L + +L L + P +
Sbjct: 107 NHFDGIVLEVWSQ---LAA---YGVPDKRKELIQLVIHLGETLHSANLKLILVIPPPREK 160
Query: 1314 IDNAY-----DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSL 1368
+ D ++ ++D S+MTYDY ++ G AP+
Sbjct: 161 GNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS---------------- 202
Query: 1369 HYWV---------SHGADRKKVIFGMPMYGQSFTLAD 1396
WV G R K++ G+ YG +TL
Sbjct: 203 --WVRSCLELLLPESGKKRAKILLGLNFYGNDYTLPG 237
>gnl|CDD|214696 smart00494, ChtBD2, Chitin-binding domain type 2.
Length = 49
Score = 55.5 bits (134), Expect = 6e-10
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 546 ETCVNGD--YLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWS 592
C P P DC + CS+G + SC L++N + CDW
Sbjct: 1 NECPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49
Score = 54.4 bits (131), Expect = 2e-09
Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 615 CQEGEFAAYPS--DCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWP 659
C YP DC+KY C G V SC GL +N +TCDWP
Sbjct: 3 CPGRGDGLYPHPTDCSKYYQCSNGRPIVGSCPAGLVFNPATQTCDWP 49
>gnl|CDD|119350 cd02871, GH18_chitinase_D-like, GH18 domain of Chitinase D (ChiD).
ChiD, a chitinase found in Bacillus circulans, hydrolyzes
the 1,4-beta-linkages of N-acetylglucosamine in chitin
and chitodextrins. The domain architecture of ChiD
includes a catalytic glycosyl hydrolase family 18 (GH18)
domain, a chitin-binding domain, and a fibronectin type
III domain. The chitin-binding and fibronectin type III
domains are located either N-terminal or C-terminal to
the catalytic domain. This family includes exochitinase
Chi36 from Bacillus cereus.
Length = 312
Score = 54.6 bits (132), Expect = 2e-07
Identities = 46/206 (22%), Positives = 77/206 (37%), Gaps = 30/206 (14%)
Query: 1145 IVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDN---- 1200
+V Y+ NW +G D + FA +D + +
Sbjct: 3 LVGYWHNWDNG--AGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPA 60
Query: 1201 KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
+F + AL+ KG KV ++IGG N +N F+ +V I E+ FDGL
Sbjct: 61 EFKADIKALQAKGKKVLISIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAA------VSPSKAV- 1313
D+D E +K+L+ + P + +L+ A A
Sbjct: 115 DIDLE-----SGSNPLNATPVITNLISALKQLKDHYGP-NFILTMAPETPYVQGGYAAYG 168
Query: 1314 -IDNAYDIPV---MSENLDWISVMTY 1335
I AY +P+ + ++L W++V Y
Sbjct: 169 GIWGAY-LPLIDNLRDDLTWLNVQYY 193
Score = 50.4 bits (121), Expect = 3e-06
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 816 LKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWE 872
L+ KG KV ++IGG N + +N F++ +V + +Y FDGLD+D E
Sbjct: 69 LQAKGKKVLISIGGANGHV------DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLE 119
>gnl|CDD|216513 pfam01456, Mucin, Mucin-like glycoprotein. This family of
trypanosomal proteins resemble vertebrate mucins. The
protein consists of three regions. The N and C terminii
are conserved between all members of the family, whereas
the central region is not well conserved and contains a
large number of threonine residues which can be
glycosylated. Indirect evidence suggested that these
genes might encode the core protein of parasite mucins,
glycoproteins that were proposed to be involved in the
interaction with, and invasion of, mammalian host cells.
This family contains an N-terminal signal peptide.
Length = 143
Score = 50.6 bits (120), Expect = 5e-07
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITT 1106
T+ + P T +T+T TT T TTTTT+TTTTT + P+ +TT+ P T
Sbjct: 48 TTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAPTTTDT 107
Query: 1107 IKP 1109
P
Sbjct: 108 RAP 110
Score = 48.7 bits (115), Expect = 2e-06
Identities = 34/90 (37%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 1035 GNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT 1094
G Y++ E ++ TT +T+ TT T ITTTTT TTTTT TTT
Sbjct: 29 GQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTT---TTT 85
Query: 1095 STTTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
+TTT P TT T+ P T T P
Sbjct: 86 TTTTEAPSKNTT-----TSEAPTTTDTRAP 110
Score = 46.8 bits (110), Expect = 8e-06
Identities = 24/66 (36%), Positives = 28/66 (42%)
Query: 1063 TTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTV 1122
+ + T TTT +TTTTT TT+TT T TT TT P TT
Sbjct: 39 AEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTT 98
Query: 1123 KPKPTT 1128
PTT
Sbjct: 99 SEAPTT 104
Score = 44.5 bits (104), Expect = 5e-05
Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 1/90 (1%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEE-PITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
T++ + + T T TT+TTTTT TTT+ TTT T
Sbjct: 24 TAQGEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTT 83
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVI 1135
T TT+ P T + I
Sbjct: 84 TTTTTTEAPSKNTTTSEAPTTTDTRAPSSI 113
Score = 42.2 bits (98), Expect = 4e-04
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Query: 1062 VTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTT 1121
E + + TTTTT+TT T TTT+TTTT TT TT TTT
Sbjct: 33 AAVVEAAEGQSQTTTTTTTTTPPT------TTTTTTTTTTTITTTTTKTTTTTTTTTTTT 86
Query: 1122 VKPKPTTVKPKPVIPPSTKD 1141
+ + P+T D
Sbjct: 87 TTTEAPSKNTTTSEAPTTTD 106
Score = 41.0 bits (95), Expect = 0.001
Identities = 29/70 (41%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 1059 STVVTTEEPEQTEEPITT-------TTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKP 1111
S T + Q + + TTT+TTTTT PPTTT+TTTT ITT K
Sbjct: 20 SVCATAQGEGQYDAAVVEAAEGQSQTTTTTTTTT----PPTTTTTTTTTTTTITTTTTKT 75
Query: 1112 TTVKPKPTTT 1121
TT TTT
Sbjct: 76 TTTTTTTTTT 85
Score = 36.0 bits (82), Expect = 0.042
Identities = 23/70 (32%), Positives = 26/70 (37%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
A Q T T PT TTTT TT +TTT+TTT + T
Sbjct: 36 VEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKN 95
Query: 727 WHPPTEPTTT 736
PTTT
Sbjct: 96 TTTSEAPTTT 105
Score = 36.0 bits (82), Expect = 0.047
Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 669 ATTTSEQVPKPTKKPTKPTKKPTTTT--EYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
A + + T T T PTTTT TT + TT+TTT T T
Sbjct: 34 AVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTT-----TTTTTTTT 88
Query: 727 WHPPTEPTTT 736
P++ TTT
Sbjct: 89 TEAPSKNTTT 98
Score = 35.6 bits (81), Expect = 0.053
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 666 QTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEW 725
QT+ TTT T PT T TTTT T +TTT+TTT + P+
Sbjct: 44 QTTTTTT------TTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTT 97
Query: 726 VWHPPTEPTTTHISVTEK 743
PT T S +
Sbjct: 98 TSEAPTTTDTRAPSSIRE 115
Score = 34.8 bits (79), Expect = 0.13
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Query: 1002 ANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTV 1061
A A A +T T P +TT T+ +K TT +T+T
Sbjct: 25 AQGEGQYDAAVVEAAEGQSQTTTTTTTT-TPPTTTTTTTTTTTTITTTTTKTTTTTTTTT 83
Query: 1062 VTTEEPEQTEEPITTTTTSTTTTTKRP 1088
TT E + TT+ TTT T+ P
Sbjct: 84 TTTTTTEAPSKNTTTSEAPTTTDTRAP 110
Score = 34.5 bits (78), Expect = 0.16
Identities = 18/72 (25%), Positives = 26/72 (36%)
Query: 662 TKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPN 721
T T+ TTT+ T T TTTT EA +K +TT+ T + P+
Sbjct: 52 TTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAPTTTDTRAPS 111
Query: 722 PTEWVWHPPTEP 733
+
Sbjct: 112 SIREIDGSLGSS 123
Score = 34.1 bits (77), Expect = 0.21
Identities = 15/69 (21%), Positives = 17/69 (24%)
Query: 1071 EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
E + TTT+TT TT T TTT TT
Sbjct: 27 GEGQYDAAVVEAAEGQSQTTTTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTT 86
Query: 1131 PKPVIPPST 1139
P
Sbjct: 87 TTTEAPSKN 95
Score = 33.7 bits (76), Expect = 0.29
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTS----TTTTTKRPKPPTTT 1094
+TT P + + TT +T+ TT + T TTTTT+ + TT P TT
Sbjct: 47 TTTTTTTPPTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAPTTTD 106
Query: 1095 STTTTRPKPI 1104
+ + + I
Sbjct: 107 TRAPSSIREI 116
Score = 31.4 bits (70), Expect = 1.6
Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 662 TKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPN 721
T + TTT+ T T TK TTTT TT + TT S A T
Sbjct: 50 TTTTPPTTTTTTTT--TTTTITTTTTKTTTTTT--TTTTTTTTTEAPSKNTTTSEAPTTT 105
Query: 722 PT 723
T
Sbjct: 106 DT 107
Score = 31.0 bits (69), Expect = 2.4
Identities = 18/57 (31%), Positives = 23/57 (40%)
Query: 659 PYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDS 715
P T T+ TT + K T T T TTT + T++ TTT T S
Sbjct: 55 PTTTTTTTTTTTTITTTTTKTTTTTTTTTTTTTTTEAPSKNTTTSEAPTTTDTRAPS 111
Score = 30.2 bits (67), Expect = 4.5
Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 664 CKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPT 723
C AT E + TTTT TT + T+TTT + T T
Sbjct: 18 CASVCATAQGEGQYDAAVVEAAEGQSQTTTT-------TTTTTPPTTTTTTTTTTTTITT 70
Query: 724 EWVWHPPTEPTTTHISVTEKSPLD 747
T TTT + T ++P
Sbjct: 71 TTTKTTTTTTTTTTTTTTTEAPSK 94
>gnl|CDD|119354 cd02875, GH18_chitobiase, Chitobiase (also known as
di-N-acetylchitobiase) is a lysosomal glycosidase that
hydrolyzes the reducing-end N-acetylglucosamine from the
chitobiose core of oligosaccharides during the ordered
degradation of asparagine-linked glycoproteins in
eukaryotes. Chitobiase can only do so if the asparagine
that joins the oligosaccharide to protein is previously
removed by a glycosylasparaginase. Chitobiase is
therefore the final step in the lysosomal degradation of
the protein/carbohydrate linkage component of
asparagine-linked glycoproteins. The catalytic domain of
chitobiase is an eight-stranded alpha/beta barrel fold
similar to that of other family 18 glycosyl hydrolases
such as hevamine and chitotriosidase.
Length = 358
Score = 53.2 bits (128), Expect = 5e-07
Identities = 64/292 (21%), Positives = 105/292 (35%), Gaps = 35/292 (11%)
Query: 1210 KKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKC 1269
KGV++ L ++ N R+++I V DG+++D E P
Sbjct: 74 HSKGVRLVL-------KGDVPLEQISNPTY-RTQWIQQKVELAKSQFMDGINIDIEQP-- 123
Query: 1270 WQVDCKQGPASDKQGFADLIKELRAAF---NPHDLLLSAAVSPSKAVID-NAYDIPVMSE 1325
+ G + +L+KE AF NP +S V+ S + ID YD +++
Sbjct: 124 --ITK--GS-PEYYALTELVKETTKAFKKENPGY-QISFDVAWSPSCIDKRCYDYTGIAD 177
Query: 1326 NLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFG 1384
D++ VM YD Q W K + +P + + G D KK++ G
Sbjct: 178 ASDFLVVMDYDEQSQIWGK--------ECIAGANSPYSQTLSGYNNFTKLGIDPKKLVMG 229
Query: 1385 MPMYGQSFTLADKNKNGLNSQTYGGAEAGEN-TRARGFLAYYEICDKIQKDGWVVVRDRK 1443
+P YG + + N + G N + A G Y K
Sbjct: 230 LPWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDS 289
Query: 1444 RRIGPYAFKGD-----QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ P+ D V +D+ + K + K L G +W DL D+
Sbjct: 290 EQKSPFYNYKDKQGNLHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDY 341
Score = 51.7 bits (124), Expect = 2e-06
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 30/174 (17%)
Query: 841 LVNSATARQRFIEHVVKFLLKYQF-DGLDLDWEYPTCWQVNCDAGPDSDKESFGL--FVR 897
+ N T R ++I+ V+ L K QF DG+++D E P + + E + L V+
Sbjct: 91 ISNP-TYRTQWIQQKVE-LAKSQFMDGINIDIEQP----ITKGS-----PEYYALTELVK 139
Query: 898 ELHQAFKPH--GLLLSAAVSPSKQVIN-AAYDVKALSESLDWISVMTYDYHGQ-WDKK-- 951
E +AFK G +S V+ S I+ YD ++++ D++ VM YD Q W K+
Sbjct: 140 ETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGIADASDFLVVMDYDEQSQIWGKECI 199
Query: 952 TGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSN 1005
G +P Y N + K G +KLVMG+P YG + N N
Sbjct: 200 AGANSP----------YSQTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGN 243
Score = 42.8 bits (101), Expect = 0.001
Identities = 54/279 (19%), Positives = 108/279 (38%), Gaps = 46/279 (16%)
Query: 212 SDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELS 271
S+ R +I +E+ DG++++++ P + + ++E +
Sbjct: 92 SNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYA---------LTELVKETT 142
Query: 272 STLRRNN--YQLTLT---SPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVK 326
++ N YQ++ SP ID+ D + +A D +++ + DE +
Sbjct: 143 KAFKKENPGYQISFDVAWSPSCIDK--RCYDYTGIADASDFLVVMDY------DEQSQIW 194
Query: 327 PNT---KVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGL 383
N + ++ S N+ K G P+++++G+P++G Y N + +
Sbjct: 195 GKECIAGAN-------SPYSQTLSGYNNFTKLGIDPKKLVMGLPWYGYDYPCLNGNLEDV 247
Query: 384 GATVK------GPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKD---- 433
T+ ++ Q+P Y + N R + PF KD
Sbjct: 248 VCTIPKVPFRGANCSDAAGRQIP-YSEIMKQIN--SSIGGRLWDSEQKSPFYNYKDKQGN 304
Query: 434 -EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRG 471
+ Y+N S+ K+ Y K+ L G +W DL D+ G
Sbjct: 305 LHQVWYDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSG 343
>gnl|CDD|119366 cd06549, GH18_trifunctional, GH18 domain of an uncharacterized
family of bacterial proteins, which share a common
three-domain architecture: an N-terminal glycosyl
hydrolase family 18 (GH18) domain, a glycosyl
transferase family 2 domain, and a C-terminal
polysaccharide deacetylase domain.
Length = 298
Score = 52.4 bits (126), Expect = 7e-07
Identities = 43/157 (27%), Positives = 70/157 (44%), Gaps = 26/157 (16%)
Query: 840 RLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVREL 899
RL+ +AR +FI ++ +L + Q DG+ LD+E P D + F+ EL
Sbjct: 81 RLLADPSARAKFIANIAAYLERNQADGIVLDFE----------ELPADDLPKYVAFLSEL 130
Query: 900 HQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLY 959
+ G L+ V P+ A +++KAL+ + D + +M YD H Q G P+
Sbjct: 131 RRRLPAQGKQLTVTV-PAD---EADWNLKALARNADKLILMAYDEHYQG----GAPGPI- 181
Query: 960 EHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYG 996
D+F N + K P KL++ + YG
Sbjct: 182 --ASQDWFESNLAQAV-----KKLPPEKLIVALGSYG 211
Score = 44.3 bits (105), Expect = 3e-04
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 14/108 (12%)
Query: 1233 RLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKEL 1292
RL+ AR+KFIA++ ++ + DG+ LD+E + PA D + + EL
Sbjct: 81 RLLADPSARAKFIANIAAYLERNQADGIVLDFE----------ELPADDLPKYVAFLSEL 130
Query: 1293 RAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQ 1340
R L+ V P+ + +++ ++ N D + +M YD H Q
Sbjct: 131 RRRLPAQGKQLTVTV-PAD---EADWNLKALARNADKLILMAYDEHYQ 174
Score = 32.8 bits (75), Expect = 1.3
Identities = 31/159 (19%), Positives = 62/159 (38%), Gaps = 33/159 (20%)
Query: 213 DRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESI-ANERSDFSTFIQELS 271
D +R FI+++ + + DG+ L D E + A++ + F+ EL
Sbjct: 85 DPSARAKFIANIAAYLERNQADGIVL-------------DFEELPADDLPKYVAFLSELR 131
Query: 272 STLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKV 331
L QLT+T P + ++ +A D ++L +++ + P+
Sbjct: 132 RRLPAQGKQLTVTVP----ADEADWNLKALARNADKLILMAYDEHYQGGAPGPIASQDWF 187
Query: 332 NIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFG 370
+N+ AV K PE++I+ + +G
Sbjct: 188 ----------ESNLAQAV-----KKLPPEKLIVALGSYG 211
>gnl|CDD|218439 pfam05109, Herpes_BLLF1, Herpes virus major outer envelope
glycoprotein (BLLF1). This family consists of the BLLF1
viral late glycoprotein, also termed gp350/220. It is the
most abundantly expressed glycoprotein in the viral
envelope of the Herpesviruses and is the major antigen
responsible for stimulating the production of
neutralising antibodies in vivo.
Length = 830
Score = 52.5 bits (125), Expect = 2e-06
Identities = 31/120 (25%), Positives = 37/120 (30%), Gaps = 11/120 (9%)
Query: 1014 PGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEP 1073
P A P +ST G G + E+ PTS + T +TS P T
Sbjct: 456 PPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTPAVTTPNATS-- 513
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
TT TS T P P TTT P T P+ T P
Sbjct: 514 PTTQKTSDTPNATSPTPIVIGVTTTA---------TSPPTGTTSVPNATSPQVTEESPVN 564
Score = 42.8 bits (100), Expect = 0.001
Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 4/96 (4%)
Query: 1040 TTEEYKPTSEESKPTT-VSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
TT++ T + PT V T T P T TS T + P T T T
Sbjct: 515 TTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSV--PNATSPQVTEESPVNNTNTPVVT 572
Query: 1099 TRPKPIT-TIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
+ P +T + PT+ P++ P
Sbjct: 573 SAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTP 608
Score = 42.1 bits (98), Expect = 0.002
Identities = 22/109 (20%), Positives = 27/109 (24%), Gaps = 8/109 (7%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
T + PTT TS P +TTT TS T T T+ T P T
Sbjct: 507 TTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNATSPQVTEESPVNNT 566
Query: 1106 TIK-----PKPTTVKPKPT---TTVKPKPTTVKPKPVIPPSTKDEFKIV 1146
P T T P + +
Sbjct: 567 NTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTST 615
Score = 41.7 bits (97), Expect = 0.003
Identities = 29/150 (19%), Positives = 46/150 (30%), Gaps = 9/150 (6%)
Query: 993 PMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESK 1052
P + + N+N + +A ++ P S +
Sbjct: 555 PQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHGTGSSPTSQQPGIPSSSHSTPRSNSTS 614
Query: 1053 PTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST-----TTTRPKP---- 1103
T + TS T E E P +TT +T + P P TT+ ++T P
Sbjct: 615 TTPLLTSAHPTGGENITEETPSVPSTTHVSTLSPGPGPGTTSQVSGPGNSSTSRYPGEVH 674
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
+T P P P + K TV
Sbjct: 675 VTEGMPNPNATSPSAPSGQKTAVPTVTSTG 704
Score = 40.5 bits (94), Expect = 0.008
Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 11/102 (10%)
Query: 1049 EESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP----PTTTSTTTTRPKPI 1104
E K T V T+ + T T+ + T TT P PT+ +T+ T
Sbjct: 442 EPHKTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATS 501
Query: 1105 TTIKP------KPTTVKPKPTTTVK-PKPTTVKPKPVIPPST 1139
T PTT K T P P +
Sbjct: 502 PTPAVTTPNATSPTTQKTSDTPNATSPTPIVIGVTTTATSPP 543
Score = 37.5 bits (86), Expect = 0.074
Identities = 33/152 (21%), Positives = 54/152 (35%), Gaps = 14/152 (9%)
Query: 1000 SLANSNDHGLNAAAPGAGVHPLLSTITEVLGHG-------PGGNYESTTEEYKPTSEESK 1052
+ + + ++ +PG P T ++V G G PG + + + S
Sbjct: 634 TPSVPSTTHVSTLSPG----PGPGTTSQVSGPGNSSTSRYPGEVHVTEGMPNPNATSPSA 689
Query: 1053 PTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPT 1112
P+ T+ T + T+ ST + P T T P TT P T
Sbjct: 690 PSGQKTAVPTVTSTGGKANSTTKETSGSTLMAST--SPHTNEGAFRTTPYNATTYLPPST 747
Query: 1113 TVKPKPTTTVKPKPTTVKPKPV-IPPSTKDEF 1143
+ K +P T P T K V +PP+ +
Sbjct: 748 SSKLRPRWTFTSPPVTTKQATVPVPPTQHPDH 779
Score = 34.8 bits (79), Expect = 0.40
Identities = 24/88 (27%), Positives = 28/88 (31%), Gaps = 9/88 (10%)
Query: 659 PYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAW 718
T A TT PT + T T T+ T TT S T TT+ A
Sbjct: 495 ATPNATSPTPAVTTPN-ATSPTTQKTSDTPNATSPTPIVIGVTTTATSPPTGTTSVPNAT 553
Query: 719 TPNPTEWVWHPPTEPT--TTHISVTEKS 744
+P TE P T VT
Sbjct: 554 SPQVTE------ESPVNNTNTPVVTSAP 575
Score = 32.8 bits (74), Expect = 1.9
Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 15/130 (11%)
Query: 1020 PLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTT- 1078
P++ +T P G S P E P + + VVT+ T T
Sbjct: 530 PIVIGVTTTATSPPTGT-TSVPNATSPQVTEESPVNNTNTPVVTSAPSVLTSAVTTGQHG 588
Query: 1079 TSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKP---------KPTTTVKPKPTTV 1129
T ++ T+++P P+++ +T TT P T+ P P+ +T+
Sbjct: 589 TGSSPTSQQPGIPSSSHSTPRSNSTSTT--PLLTSAHPTGGENITEETPSVPSTTHVSTL 646
Query: 1130 KPKPVIPPST 1139
P P P T
Sbjct: 647 SPGP--GPGT 654
Score = 31.7 bits (71), Expect = 3.4
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 666 QTSATTTSEQVPKPTKKPTKPTKKPTT-----TTEYNPPEATTKPSTTTSTTTDSGAWTP 720
+T+A T+ +P + PT T PT+ TT PE T+ S TTS T ++ + TP
Sbjct: 445 KTTAVPTTPSLPPASTGPTVSTADPTSGTPTGTTSSTLPEDTSPTSRTTSATPNATSPTP 504
Query: 721 -NPTEWVWHPPTEPTTTHISVTEKSPL 746
T P T+ T+ + T +P+
Sbjct: 505 AVTTPNATSPTTQKTSDTPNATSPTPI 531
Score = 31.7 bits (71), Expect = 3.5
Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 1040 TTEEYKPTSEESKPTTVSTSTVVTT--EEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
TT +K ++ TT S V T EP +T TT + +T TS T
Sbjct: 414 TTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAVPTTPSLPPASTGPTVSTADPTSGT 473
Query: 1098 TTRPKPITTIK-PKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
T T + PT+ T PT P T
Sbjct: 474 PTGTTSSTLPEDTSPTSRTTSATPN-ATSPTPAVTTPNATSPT 515
Score = 31.7 bits (71), Expect = 3.5
Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query: 671 TTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNP-----TEW 725
+T + PT + T T T+ T T P TT T+ A +P P T
Sbjct: 480 STLPEDTSPTSRTTSATPNATSPTPAVTTPNATSP-TTQKTSDTPNATSPTPIVIGVTTT 538
Query: 726 VWHPP---TEPTT-THISVTEKSP 745
PP T T VTE+SP
Sbjct: 539 ATSPPTGTTSVPNATSPQVTEESP 562
Score = 30.9 bits (69), Expect = 6.7
Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 3/97 (3%)
Query: 1037 YESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST 1096
+E T ++ T +T+ TT + + P TT + T +P TT+
Sbjct: 390 FEVTVANPVADAKTLIITRTATNATTTTHKVVFHKAPDTTKSVIFVYTLVHVEPHKTTAV 449
Query: 1097 TTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
TT P + P TV T+ P TT P
Sbjct: 450 PTTPSLPPASTGP---TVSTADPTSGTPTGTTSSTLP 483
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in the
binding of extracellular matrix components and growth
factors.
Length = 207
Score = 45.9 bits (109), Expect = 4e-05
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 5/88 (5%)
Query: 1044 YKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP 1103
P+ +E +++T + T + TT+ +T+TK +TT TTTT P
Sbjct: 60 ATPSDDEDSEPVTTSATP---PKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSE 116
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPTTVKP 1131
T + TTV T T P
Sbjct: 117 TDT-EEATTTV-STETPTEGGSSAATDP 142
Score = 34.3 bits (79), Expect = 0.32
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 6/82 (7%)
Query: 670 TTTSEQVPKPTKKPTKPTKKPTT---TTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
TTS PK T + P+ TT +T+ +P +TT +TT+ + TD+ T
Sbjct: 71 VTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDT---EEATTTVS 127
Query: 727 WHPPTEPTTTHISVTEKSPLDQ 748
PTE ++ + K+ L++
Sbjct: 128 TETPTEGGSSAATDPSKNLLER 149
Score = 33.6 bits (77), Expect = 0.48
Identities = 18/66 (27%), Positives = 27/66 (40%)
Query: 649 WNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTT 708
D K TS++ +++ T T PT T TT +P E T+ +TT
Sbjct: 65 DEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATT 124
Query: 709 TSTTTD 714
T +T
Sbjct: 125 TVSTET 130
Score = 33.6 bits (77), Expect = 0.59
Identities = 25/94 (26%), Positives = 37/94 (39%), Gaps = 15/94 (15%)
Query: 1051 SKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPK 1110
+ P+ S VTT T +TTT++S + T TT ST+T ++T
Sbjct: 60 ATPSDDEDSEPVTTS---ATPPKLTTTSSSPSNDT------TTASTSTKTSPTVSTTVTT 110
Query: 1111 PTTVKPKPTTTVKPKPTTV---KPKPVIPPSTKD 1141
T+ P T + TTV P + D
Sbjct: 111 TTS--PS-ETDTEEATTTVSTETPTEGGSSAATD 141
Score = 32.4 bits (74), Expect = 1.3
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 5/78 (6%)
Query: 1067 PEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKP 1126
P E+ TT++T + TTT T+ PT TTT P
Sbjct: 62 PSDDEDSEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTS----PTVSTTVTTTTS-PSE 116
Query: 1127 TTVKPKPVIPPSTKDEFK 1144
T + +
Sbjct: 117 TDTEEATTTVSTETPTEG 134
Score = 30.5 bits (69), Expect = 4.6
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 7/59 (11%)
Query: 689 KPTTTTEYNPPEATTKPS------TTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVT 741
TT PP+ TT S TT ST+T + P+E T + T
Sbjct: 68 SEPVTTSATPPKLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTT-TSPSETDTEEATTT 125
Score = 30.1 bits (68), Expect = 7.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTE-EPITTTTTSTTTTTKRPKPPTTTS 1095
S +K + ++TV TT P +T+ E TTT ++ T T T S
Sbjct: 93 TASTSTKTSPTVSTTVTTTTSPSETDTEEATTTVSTETPTEGGSSAATDPS 143
>gnl|CDD|114270 pfam05539, Pneumo_att_G, Pneumovirinae attachment membrane
glycoprotein G.
Length = 408
Score = 47.4 bits (112), Expect = 4e-05
Identities = 28/135 (20%), Positives = 48/135 (35%), Gaps = 20/135 (14%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEE--PEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPK 1102
K TS ++ + + + VT + Q + T ++T T +TT++ P+
Sbjct: 176 KTTSWPTEVSHPTYPSQVTPQSQPATQGHQTATANQRLSST----EPVGTQGTTTSSNPE 231
Query: 1103 PITTIKPK-----------PTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTN 1151
P T P P+T +TT + T + PP+T + T
Sbjct: 232 PQTEPPPSQRGPSGSPQHPPSTTSQDQSTTGDGQEHT--QRRKTPPATSNRRSPHSTATP 289
Query: 1152 WAW-YRQSGGKYLPS 1165
RQ G+ P
Sbjct: 290 PPTTKRQETGRPTPR 304
Score = 47.0 bits (111), Expect = 6e-05
Identities = 30/108 (27%), Positives = 41/108 (37%), Gaps = 6/108 (5%)
Query: 1032 GPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP 1091
P G +TT E P+ S + + P T +TT T+R K P
Sbjct: 217 EPVGTQGTTTSSNPEPQTEPPPSQRGPSG--SPQHPPSTTSQDQSTTGDGQEHTQRRKTP 274
Query: 1092 TTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
TS + P +T P PTT K + T P+PT PP +
Sbjct: 275 PATSNRRS---PHSTATPPPTT-KRQETGRPTPRPTATTQSGSSPPHS 318
Score = 38.5 bits (89), Expect = 0.024
Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 6/92 (6%)
Query: 648 YWNDKMKTCDWPYRTK----CKQT-SATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEA- 701
Y C R K CK+ +A TTS+ PT+ T +
Sbjct: 145 YNPRDRPKCRCTLRGKDVSCCKEPKTAVTTSKTTSWPTEVSHPTYPSQVTPQSQPATQGH 204
Query: 702 TTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEP 733
T + ++T+ T P TEP
Sbjct: 205 QTATANQRLSSTEPVGTQGTTTSSNPEPQTEP 236
Score = 30.8 bits (69), Expect = 5.6
Identities = 12/62 (19%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 652 KMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTST 711
+ KT + +T T ++ +PT +PT TT+ + P +
Sbjct: 270 RRKTPPATSNRR--SPHSTATPPPTT-KRQETGRPTPRPTATTQSGSSPPHSSPPGVQAN 326
Query: 712 TT 713
T
Sbjct: 327 PT 328
Score = 30.4 bits (68), Expect = 7.9
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 665 KQTSATTTSEQVPKPTKKPTKPTKK-PTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPT 723
+ +TT+ +Q + +K P T+ P +T P TT ++G TP PT
Sbjct: 248 QHPPSTTSQDQSTTGDGQEHTQRRKTPPATSNRRSPHSTATPPPTTKRQ-ETGRPTPRPT 306
Query: 724 EWVWHPPTEPTTTHISVTEKSPLDQ 748
+ P ++ V + +P Q
Sbjct: 307 ATTQSGSSPPHSSPPGV-QANPTTQ 330
>gnl|CDD|119363 cd06546, GH18_CTS3_chitinase, GH18 domain of CTS3 (chitinase 3), an
uncharacterized protein from the human fungal pathogen
Coccidioides posadasii. CTS3 has a chitinase-like
glycosyl hydrolase family 18 (GH18) domain; and has
homologs in bacteria as well as fungi.
Length = 256
Score = 46.2 bits (110), Expect = 5e-05
Identities = 39/168 (23%), Positives = 59/168 (35%), Gaps = 39/168 (23%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDL----CTHVIYGFAVLDTDQLVI----KPHDT- 1194
++V Y+ S G + S + TH+I ++ D + P
Sbjct: 1 RLVIYYQT---THPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPR 57
Query: 1195 ----WADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVN 1250
W +L L+ GVKV +GG A +SRL + + ++ + +
Sbjct: 58 FTTLWTELA--------ILQSSGVKVMGMLGGA---APGSFSRLDDDDEDFERYYGQLRD 106
Query: 1251 FILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNP 1298
I DGLDLD E P G LI LR+ F P
Sbjct: 107 MIRRRGLDGLDLDVEEPM------SLD------GIIRLIDRLRSDFGP 142
Score = 45.0 bits (107), Expect = 1e-04
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 11/129 (8%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDI----RTDLCTH-IVYGFAVLDSENLIIKAHDSWADF 805
++V Y+ P G + + + TH IV + D N+ + H
Sbjct: 1 RLVIYYQT---THPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPR 57
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
+ + L+ GVKV +GG G +SRL + +R+ + + + D
Sbjct: 58 FTTLWTELAILQSSGVKVMGMLGGAAP---GSFSRLDDDDEDFERYYGQLRDMIRRRGLD 114
Query: 866 GLDLDWEYP 874
GLDLD E P
Sbjct: 115 GLDLDVEEP 123
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 45.5 bits (108), Expect = 9e-05
Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 3/84 (3%)
Query: 1061 VVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTT 1120
+V + + T + P+ T P T KPK K
Sbjct: 36 LVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPK 95
Query: 1121 TVKPKPTTVKPKPVIPPSTKDEFK 1144
KPKP KPKP P K + K
Sbjct: 96 KPKPKP---KPKPKPKPKVKPQPK 116
Score = 43.2 bits (102), Expect = 5e-04
Identities = 30/99 (30%), Positives = 36/99 (36%), Gaps = 12/99 (12%)
Query: 1045 KPTSEESKPTTVSTS-TVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP 1103
P + V + T EPE EE T + P PT +PK
Sbjct: 37 VPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTE-----PETPPEPTPP-----KPKE 86
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPTTV-KPKPVIPPSTKD 1141
+ KP KPKP KPKP +PKP PPS
Sbjct: 87 KPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTA 125
Score = 32.8 bits (75), Expect = 0.97
Identities = 27/135 (20%), Positives = 36/135 (26%), Gaps = 6/135 (4%)
Query: 1008 GLNAAAPGAGVHPLLSTITEVLGHGPGGNYES--TTEEYKPTSEESKPTTVSTSTVVTTE 1065
L+ A A + L V PT EE +P
Sbjct: 12 LLSGALVAALLFVFLHQEDFVGIELVPLAVFLLAAKVLEAPT-EEPQPEP---EPPEEQP 67
Query: 1066 EPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPK 1125
+P E T +P+ +PKP K KP KP + K
Sbjct: 68 KPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Query: 1126 PTTVKPKPVIPPSTK 1140
+P PPS
Sbjct: 128 APAAPNQPARPPSAA 142
>gnl|CDD|216421 pfam01299, Lamp, Lysosome-associated membrane glycoprotein (Lamp).
Length = 305
Score = 45.1 bits (107), Expect = 2e-04
Identities = 26/105 (24%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT--S 1095
T Y + P ++ V T T+ P TT ++TT T T
Sbjct: 4 TELTFSYNLSDTTLFPNA-TSKGVKTVTSSTDTKAPTNTTYRCVSSTTVPMTNVTVTLHD 62
Query: 1096 TTTTRPKPITTIKPKPTTV---KPKPTT--TVKPKPTTVKPKPVI 1135
T T T P PTT T P PT V P +
Sbjct: 63 VTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPTPVPSSPAV 107
Score = 39.7 bits (93), Expect = 0.007
Identities = 24/103 (23%), Positives = 31/103 (30%), Gaps = 18/103 (17%)
Query: 1050 ESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT-----STTTTRPKPI 1104
T S + TT P T + + T T+ST T K PT T S+TT +
Sbjct: 2 SVTELTFSYNLSDTTLFPNATSKGVKTVTSSTDT-----KAPTNTTYRCVSSTTVPMTNV 56
Query: 1105 TTIK--------PKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
T T T P+ P T
Sbjct: 57 TVTLHDVTLQAYLSNGTFSKTETRCEADTPSPTTVATPSPSPT 99
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 45.6 bits (108), Expect = 2e-04
Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 1073 PITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKP-KPTTVKP 1131
P T+ + RP P +T I +P T P +P P
Sbjct: 366 PQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRET-ATPPPVPPRPVAPPVPHT 424
Query: 1132 KPVIPPSTKDEFKIV 1146
P T+ +
Sbjct: 425 PESAPKLTRAAIPVD 439
Score = 41.7 bits (98), Expect = 0.003
Identities = 24/99 (24%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
P + +KPT + S V T P + + P P+P+
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVP-----PRPVA 418
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
P P T + P T P KPK P K+E K
Sbjct: 419 P--PVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKEEEK 455
Score = 35.2 bits (81), Expect = 0.31
Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 2/82 (2%)
Query: 659 PYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTT--STTTDSG 716
+ + T A +T + P K + T T PP P T S +
Sbjct: 374 AAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLTR 433
Query: 717 AWTPNPTEWVWHPPTEPTTTHI 738
A P + + PP P
Sbjct: 434 AAIPVDEKPKYTPPAPPKEEEK 455
Score = 34.8 bits (80), Expect = 0.45
Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 9/59 (15%)
Query: 1088 PKPPTTT------STTTTRPKPITTIKPKPTTVKPKPTTTVKPK---PTTVKPKPVIPP 1137
P P + + RP P + +PK P + P V P+PV PP
Sbjct: 362 PVPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPP 420
Score = 31.3 bits (71), Expect = 4.1
Identities = 14/77 (18%), Positives = 22/77 (28%), Gaps = 7/77 (9%)
Query: 667 TSATTTSEQVPKPT-KKPTK-PTKKPTTTTEYNPPEATTKPSTTT-STTTDSGAWTPNPT 723
+ P+ +PT P+ +P N P T T P P
Sbjct: 364 PAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPH 423
Query: 724 EWVWHPPTEPTTTHISV 740
P + P T ++
Sbjct: 424 T----PESAPKLTRAAI 436
Score = 31.3 bits (71), Expect = 4.3
Identities = 15/87 (17%), Positives = 23/87 (26%), Gaps = 4/87 (4%)
Query: 1033 PGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPT 1092
P + +PT S + + + +EP E P P
Sbjct: 368 PAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEP-VRETATPPPVPPRPVAPPVPHTPE 426
Query: 1093 TTSTTTTRPKPITTIKPKPTTVKPKPT 1119
+ T P+ KP P P
Sbjct: 427 SAPKLTRAAIPVDE---KPKYTPPAPP 450
>gnl|CDD|191251 pfam05283, MGC-24, Multi-glycosylated core protein 24 (MGC-24). This
family consists of several MGC-24 (or Cd164 antigen)
proteins from eukaryotic organisms. MGC-24/CD164 is a
sialomucin expressed in many normal and cancerous
tissues. In humans, soluble and transmembrane forms of
MGC-24 are produced by alternative splicing.
Length = 187
Score = 43.8 bits (103), Expect = 2e-04
Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 8/87 (9%)
Query: 1040 TTEEYKPTSEESKPTTVSTSTVV--TTEEPEQTEEPITTTTT-----STTTTTKRPKPPT 1092
+T ++ E S + VV + T+ TTT ST T P P T
Sbjct: 73 STCVWQQCGPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTNSTAKPTITPSPTT 132
Query: 1093 TTSTTTTRPKPITTIKPKPTTVKPKPT 1119
+ T+ PK TT+ P + K T
Sbjct: 133 SHHHVTSEPKTNTTVTPTSQPDR-KST 158
Score = 33.8 bits (77), Expect = 0.43
Identities = 26/108 (24%), Positives = 33/108 (30%), Gaps = 23/108 (21%)
Query: 627 CNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCK----------QTSATTTSEQV 676
N C+ ++ ++C W + C C Q TT S V
Sbjct: 59 LNSCVSCVNRTHNNSTC----VW----QQCGPEEPGYCSSQAEVVKSGCQIYNTTDSCSV 110
Query: 677 PKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTE 724
T PT T KPT T P TT TS + TP
Sbjct: 111 ATTTPVPTNSTAKPTIT-----PSPTTSHHHVTSEPKTNTTVTPTSQP 153
Score = 33.4 bits (76), Expect = 0.49
Identities = 28/101 (27%), Positives = 37/101 (36%), Gaps = 22/101 (21%)
Query: 1055 TVSTSTVV----TTEEPEQ--TEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK 1108
T + ST V EEP ++ + + TT TTT T +T K
Sbjct: 69 THNNSTCVWQQCGPEEPGYCSSQAEVVKSGCQIYNTTDSCSVATTTPVPTN-----STAK 123
Query: 1109 PKPTTVKPKPTTTVKPKPTTVKPK------PVIPPSTKDEF 1143
P T+ P PTT+ T +PK P P K F
Sbjct: 124 P---TITPSPTTS--HHHVTSEPKTNTTVTPTSQPDRKSTF 159
>gnl|CDD|225629 COG3087, FtsN, Cell division protein [Cell division and chromosome
partitioning].
Length = 264
Score = 44.4 bits (105), Expect = 2e-04
Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 2/79 (2%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
T+ EQ E+ T + TT T +PKP KP+P P P K
Sbjct: 112 TQLGEQPEQARIEEQPRTQSQKA-QSQATTVQTQPVKPKPRPE-KPQPVAPAPAPEPVEK 169
Query: 1124 PKPTTVKPKPVIPPSTKDE 1142
P P E
Sbjct: 170 APKAEAAPPPKPKAEDAAE 188
Score = 35.6 bits (82), Expect = 0.14
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 1051 SKPTTVSTST---------VVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP 1101
++P V + + E ++ + ++P+ + + +
Sbjct: 81 TEPAAVKDAERLTPEQRQLLEQMEVDQKAQPTQLGEQPEQARIEEQPRTQSQKAQSQATT 140
Query: 1102 KPITTIKPKPTTVKPK---PTTTVKPKPTTVKPKPVIPPSTKDE 1142
+KPKP KP+ P +P K + PP K E
Sbjct: 141 VQTQPVKPKPRPEKPQPVAPAPAPEPVEKAPKAEAAPPPKPKAE 184
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General function
prediction only].
Length = 872
Score = 45.2 bits (107), Expect = 3e-04
Identities = 14/68 (20%), Positives = 32/68 (47%)
Query: 1040 TTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTT 1099
T ++ + + T++VV T+ QT+ ++ + + TT+ + TTT+T+ +
Sbjct: 783 TETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPS 842
Query: 1100 RPKPITTI 1107
+ I
Sbjct: 843 QTTTGGGI 850
Score = 44.1 bits (104), Expect = 6e-04
Identities = 26/78 (33%), Positives = 34/78 (43%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
+ T E + +++ T ++ T+ E T IT T T T TTT P P TTS T
Sbjct: 770 GTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPT 829
Query: 1098 TTRPKPITTIKPKPTTVK 1115
T TT P TT
Sbjct: 830 QTSTSTTTTTSPSQTTTG 847
Score = 42.5 bits (100), Expect = 0.002
Identities = 28/91 (30%), Positives = 32/91 (35%), Gaps = 17/91 (18%)
Query: 1055 TVSTSTVVTTEEPEQTEEPITTTTTSTT---------------TTTKRPKPPTTTSTTTT 1099
T T +TT E P + T T TT T+ K T T TTT+
Sbjct: 759 ASGTGTSITTSGTFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTS 818
Query: 1100 RPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
P P T PT TTT P TT
Sbjct: 819 SPSPTQT--TSPTQTSTSTTTTTSPSQTTTG 847
Score = 42.2 bits (99), Expect = 0.002
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTK 1086
TT + TT S+ + T P QT TTTT+ + TTT
Sbjct: 795 TSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTG 847
Score = 41.4 bits (97), Expect = 0.005
Identities = 19/76 (25%), Positives = 29/76 (38%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
+ E + T T ++ T I TT+ T T + + T++ + T P
Sbjct: 771 TFTAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQ 830
Query: 1106 TIKPKPTTVKPKPTTT 1121
T TT P TTT
Sbjct: 831 TSTSTTTTTSPSQTTT 846
Score = 34.5 bits (79), Expect = 0.59
Identities = 21/122 (17%), Positives = 31/122 (25%), Gaps = 25/122 (20%)
Query: 1043 EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTT-------TSTTTTTKRPKPPTTTS 1095
+ T + + TV S V P T S T T+ T
Sbjct: 716 KNPDTVKIGQALTVYGSLEVFPAGENWGFIPTTKRVKVRIMDPASGTGTSITTSGTFTAE 775
Query: 1096 TTTTRPKPITTIK------------------PKPTTVKPKPTTTVKPKPTTVKPKPVIPP 1137
+ K TT+ K T T++ P TT +
Sbjct: 776 VPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTST 835
Query: 1138 ST 1139
+T
Sbjct: 836 TT 837
Score = 34.5 bits (79), Expect = 0.59
Identities = 12/59 (20%), Positives = 23/59 (38%)
Query: 658 WPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSG 716
Y + T+ V T T+ T + T+ P T+ +TTT++ + +
Sbjct: 787 LSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTT 845
Score = 33.3 bits (76), Expect = 1.1
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 668 SATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTS---TTTDSGAWTP 720
TTS + K + T P+ T +P + +T +TTTS TTT G P
Sbjct: 798 LIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853
Score = 32.9 bits (75), Expect = 1.7
Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 5/81 (6%)
Query: 670 TTTSEQVPKPTKK-----PTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTE 724
T Q P T+ T TT + T+ TTTS+ + + +P T
Sbjct: 773 TAEVPQSPTKTETTLSYSAYSNTSILIETTSVVITKTVTQTQTTTSSPSPTQTTSPTQTS 832
Query: 725 WVWHPPTEPTTTHISVTEKSP 745
T P+ T P
Sbjct: 833 TSTTTTTSPSQTTTGGGICGP 853
Score = 32.5 bits (74), Expect = 1.9
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 666 QTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGA 717
T T Q T P+ PT+ + T TT PS TT+ G
Sbjct: 803 SVVITKTVTQTQTTTSSPS-PTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium (Slime
molds). REP protein is likely involved in transcription
regulation and control of DNA replication, specifically
amplification of plasmid at low copy numbers. The
formation of homomultimers may be required for their
regulatory activity.
Length = 910
Score = 44.4 bits (105), Expect = 5e-04
Identities = 26/120 (21%), Positives = 40/120 (33%), Gaps = 13/120 (10%)
Query: 1021 LLSTITEVLGHGPGGNYESTTEEYK--PTSE-ESKPTTVSTSTVVTT----EEPEQTEEP 1073
+LS + + E +E Y P E + + ++ + + ++ P
Sbjct: 193 MLSLFHPIKVDSQNRDEEILSEIYSLYPFVNLEVNESDIEQISINSENIQRINSQPSKRP 252
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
TTTT+TTTTT TT T + K I K K KP
Sbjct: 253 NNTTTTTTTTTT------TTFQPRTRKRKSIDDHKLSLNQAPEKFKNNTKPDDDPQSDFS 306
Score = 36.7 bits (85), Expect = 0.11
Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 10/116 (8%)
Query: 1062 VTTEEPEQTEEPITTTTTSTTTTTKRP-KPPTTTSTTTTRPKPITTIKPKPTTVKPKPTT 1120
V E E E I+ + + +P K P T+TTTT TT +P T K K
Sbjct: 222 VNLEVNESDIEQISINSENIQRINSQPSKRPNNTTTTTTT---TTTTTFQPRTRKRKSID 278
Query: 1121 TVKPKPTTVK-PKPVIPPSTKDEFKIVCYFTNWAWYRQSGG-KYLPSDIDSDLCTH 1174
K D + R+SG K + D S +H
Sbjct: 279 DHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGS----RKSGSLKDVRIDNISCSVSH 330
Score = 32.1 bits (73), Expect = 2.8
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 14/93 (15%)
Query: 665 KQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTT------STTTDSGAW 718
T+ TTT+ P+ K+ + K + + TKP + SG+
Sbjct: 257 TTTTTTTTTTFQPRTRKRKSIDDHKLSLNQAPEKFKNNTKPDDDPQSDFSDKGSRKSGSL 316
Query: 719 TP----NPTEWVWHPPT----EPTTTHISVTEK 743
N + V H PT T ISV+ K
Sbjct: 317 KDVRIDNISCSVSHNGVNISISPTETIISVSNK 349
>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional.
Length = 226
Score = 42.7 bits (101), Expect = 7e-04
Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 4/76 (5%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
E + + +T P P +PKP+ KPKP + K
Sbjct: 72 AEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKPKP-KPQQKVEAPPA 130
Query: 1124 PKPTTVKPKPVIPPST 1139
PKP PKPV+
Sbjct: 131 PKPE---PKPVVEEKA 143
Score = 41.1 bits (97), Expect = 0.002
Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 1067 PE-QTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPK 1125
PE E + + PP T P P+ KPKP KPKP + K
Sbjct: 68 PEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPE--PAPVEPPKPKPVE-KPKPKPKPQQK 124
Query: 1126 PT-TVKPKPVIPPSTKDE 1142
PKP P +++
Sbjct: 125 VEAPPAPKPEPKPVVEEK 142
Score = 29.6 bits (67), Expect = 9.9
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 1105 TTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
T+ P T V+P+P PKP KPV P K + +
Sbjct: 88 ATVAPPNTPVEPEPAPVEPPKP-----KPVEKPKPKPKPQ 122
>gnl|CDD|165513 PHA03255, PHA03255, BDLF3; Provisional.
Length = 234
Score = 42.2 bits (98), Expect = 0.001
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 1035 GNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT 1094
GN TT P+ S P+T ++T+ TT P T ++T TT+ T+T P TT
Sbjct: 35 GNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTT 94
Query: 1095 STTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
S +T T K + T T
Sbjct: 95 SNAST---INVTTKVTAQNITATEAGTGTSTGVT 125
Score = 40.3 bits (93), Expect = 0.004
Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 2/122 (1%)
Query: 1010 NAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTV-VTTEEPE 1068
+A+ P L+T + + + +TT T+ PTT + ST+ VTT+
Sbjct: 49 SASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNASTINVTTKVTA 108
Query: 1069 QTEEPITT-TTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPT 1127
Q T TST T+ ++T++ TTR TT+ P ++ T +
Sbjct: 109 QNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTLSSKGTSNATKTTAELP 168
Query: 1128 TV 1129
TV
Sbjct: 169 TV 170
Score = 39.5 bits (91), Expect = 0.007
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITT 1106
S + V+ +T VTT P + +TT TTT+ P TTT+ +T TT
Sbjct: 28 GSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSA----PITTTAILSTN---TTT 80
Query: 1107 IKPKPTTVKPKPTTTVKPKPTT 1128
+ TTV P PTT+
Sbjct: 81 VTSTGTTVTPVPTTSNASTINV 102
Score = 33.7 bits (76), Expect = 0.58
Identities = 25/115 (21%), Positives = 39/115 (33%), Gaps = 4/115 (3%)
Query: 1023 STITEVLGHGPGGNYESTTEEYKPTSEESKPTTV----STSTVVTTEEPEQTEEPITTTT 1078
+ T V P + ST + T+ + TT + +T VT+ T P T+
Sbjct: 38 TGTTAVTTPSPSASGPSTNQSTTLTTTSAPITTTAILSTNTTTVTSTGTTVTPVPTTSNA 97
Query: 1079 TSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
++ TTK T + T T + TT TT+ P
Sbjct: 98 STINVTTKVTAQNITATEAGTGTSTGVTSNVTTRSSSTTSATTRITNATTLAPTL 152
Score = 33.3 bits (75), Expect = 0.62
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 1058 TSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT--TSTTTTRPKPITTIKPKPTTVK 1115
TS + T+ T TT+ TT + P+T ++T TT PITT T +
Sbjct: 20 TSLIWTSSGSSTASAGNVTGTTAVTTPSPSASGPSTNQSTTLTTTSAPITT-----TAIL 74
Query: 1116 PKPTTTVKPKPTTVKPKP 1133
TTTV TTV P P
Sbjct: 75 STNTTTVTSTGTTVTPVP 92
>gnl|CDD|139494 PRK13335, PRK13335, superantigen-like protein; Reviewed.
Length = 356
Score = 42.8 bits (100), Expect = 0.001
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 1039 STTEEYKPTSEESKPTT---VSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTS 1095
+T +E P E++ T S S + +P+Q E + S T K+ + TTT
Sbjct: 67 NTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEE--QKSLNISATPAPKQEQSQTTTE 124
Query: 1096 TTTTRPKPITTIKPKPTTVKP-KPTTTVKPK-PTTVKPKPVIPPSTKD 1141
+TT PK T P T +P + T + P+ PT + + + P +D
Sbjct: 125 STT--PKTKVTTPPSTNTPQPMQSTKSDTPQSPTIKQAQTDMTPKYED 170
Score = 35.9 bits (82), Expect = 0.16
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 19/97 (19%)
Query: 1056 VSTSTVVTTEEPEQTEEPIT----------TTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
++ T + T + T TS + K +P +
Sbjct: 54 ITAGANSATTQAANTRQERTPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISAT-- 111
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
P + + TT + TT K K PPST
Sbjct: 112 -----PAPKQEQSQTT--TESTTPKTKVTTPPSTNTP 141
Score = 32.8 bits (74), Expect = 1.3
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 1026 TEVLGHGPGGNYEST-----TEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTS 1080
T L P N E T + +P EE K +S + E+ + T E T T
Sbjct: 73 TPKLEKAPNTNEEKTSASKIEKISQPKQEEQKSLNISATPAPKQEQSQTTTESTTPKTKV 132
Query: 1081 TTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPK 1117
TT + P ++ + T P TIK T + PK
Sbjct: 133 TTPPSTNTPQPMQSTKSDTPQSP--TIKQAQTDMTPK 167
Score = 32.4 bits (73), Expect = 1.6
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 7/93 (7%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPST-TTSTTTDSGAWTPNPTEW 725
S Q + +K + P E + TT+ +T T TT TP P +
Sbjct: 89 ASKIEKISQPKQEEQKSLNISATPAPKQEQ--SQTTTESTTPKTKVTTPPSTNTPQPMQS 146
Query: 726 VWHP-PTEPTTTHISVTEKSPLDQYFKIVCYFT 757
P PT + T+ +P +Y + Y+T
Sbjct: 147 TKSDTPQSPTIKQ-AQTDMTP--KYEDLRAYYT 176
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 42.1 bits (99), Expect = 0.002
Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 9/89 (10%)
Query: 1048 SEESKPTTVSTSTVVTTEEPEQT--EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
+EE TT +TST P ++ E T T TT P ++S T P +
Sbjct: 28 AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAP--SSSETAETSDPTS 85
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPV 1134
T+ T KPV
Sbjct: 86 EATDTTTSEARTV-----TPAATETSKPV 109
Score = 39.5 bits (92), Expect = 0.017
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 7/90 (7%)
Query: 1057 STSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVK- 1115
+++ + E T P T+T TT + T + T P TT P++ +
Sbjct: 20 ASNPKLAQAEEIVTTTPATSTEAEQTTPVE--SDATEEADNTETPVAATTAAEAPSSSET 77
Query: 1116 ---PKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
PT+ T+ P +T+
Sbjct: 78 AETSDPTSEATDTTTSEARTVT-PAATETS 106
Score = 37.9 bits (88), Expect = 0.044
Identities = 28/107 (26%), Positives = 41/107 (38%), Gaps = 14/107 (13%)
Query: 1021 LLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVT--TEEPEQTEEPITTTT 1078
LL+ L EE T+ + T+ V + TEE + TE P+ TT
Sbjct: 17 LLTASNPKLAQ---------AEEIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATT 67
Query: 1079 ---TSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTV 1122
+++ T PT+ +T TT + T T KP TV
Sbjct: 68 AAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETSKPVEGQTV 114
Score = 32.5 bits (74), Expect = 2.2
Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
Query: 662 TKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEA--TTKPSTTTSTTTDSGAWT 719
T + T + P T + E T+ P++ + TT S A T
Sbjct: 38 TSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEART 97
Query: 720 PNPTEWVWHPPTEPTT 735
P P E T
Sbjct: 98 VTPAATETSKPVEGQT 113
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 41.1 bits (96), Expect = 0.003
Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 4/93 (4%)
Query: 1052 KPTTVSTSTVVTTEE--PEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKP 1109
T T+ TTEE P + + T T T K K ++K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTS-TKAAKKAAKVKKT-KSVKT 58
Query: 1110 KPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
V K T K +V K V + E
Sbjct: 59 TTKKVTVKFEKTESVKKESVAKKTVKKEAVSAE 91
Score = 33.4 bits (76), Expect = 0.75
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 665 KQTSATTTSEQVPKPTKKP--------TKPTKKPTTTTEYNPPEATTKPSTTTSTT 712
K+T+ T+E+ KK TK T K T+T K + +TT
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
>gnl|CDD|237191 PRK12757, PRK12757, cell division protein FtsN; Provisional.
Length = 256
Score = 40.8 bits (96), Expect = 0.003
Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%)
Query: 1068 EQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKP- 1126
EQT + +T ++ +PP TT+ P T P P P T P
Sbjct: 109 EQTPQVPRSTVQIQQQA-QQQQPPATTAQPQPVTPPRQTTAPVQPQ-TPAPVRTQPAAPV 166
Query: 1127 TTVKPKPVIPPSTKDE 1142
T P + + E
Sbjct: 167 TQAVEAPKVEAEKEKE 182
Score = 35.0 bits (81), Expect = 0.20
Identities = 16/72 (22%), Positives = 22/72 (30%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITT 1106
T + + T + P T +P T TT +P+ P T P
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAV 170
Query: 1107 IKPKPTTVKPKP 1118
PK K K
Sbjct: 171 EAPKVEAEKEKE 182
Score = 33.5 bits (77), Expect = 0.73
Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 1/72 (1%)
Query: 1063 TTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKP-KPTTVKPKPTTT 1121
T + P T + T P T TT P T P + P
Sbjct: 111 TPQVPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPAAPVTQAV 170
Query: 1122 VKPKPTTVKPKP 1133
PK K K
Sbjct: 171 EAPKVEAEKEKE 182
Score = 31.6 bits (72), Expect = 2.9
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTT----TTKRPKPPTTTSTTTTRP 1101
P +E++ V STV ++ +Q + P TT T TT +P T T
Sbjct: 106 PYNEQTPQ--VPRSTVQIQQQAQQQQPPATTAQPQPVTPPRQTTAPVQPQTPAPVRTQPA 163
Query: 1102 KPITTIKPKPTTVKPKPTT 1120
P+T P K
Sbjct: 164 APVTQAVEAPKVEAEKEKE 182
>gnl|CDD|236792 PRK10905, PRK10905, cell division protein DamX; Validated.
Length = 328
Score = 41.1 bits (96), Expect = 0.003
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 5/98 (5%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
GN T + + + V+ ++P+ T + T T KR +P
Sbjct: 135 NGNASRQTAKTQTAERPATTRPARKQAVIEPKKPQATAK---TEPKPVAQTPKRTEPAAP 191
Query: 1094 TSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKP 1131
++T P +T PK T P T P TT P
Sbjct: 192 VASTKA-PAATSTPAPKETA-TTAPVQTASPAQTTATP 227
Score = 36.5 bits (84), Expect = 0.086
Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 12/68 (17%)
Query: 666 QTSATTTSEQVPKPTKK-----PTKPTKKPTTTTEYNP-------PEATTKPSTTTSTTT 713
Q +A T + V + K+ P TK P T+ P P T P+ TT+T
Sbjct: 169 QATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPA 228
Query: 714 DSGAWTPN 721
G N
Sbjct: 229 AGGKTAGN 236
Score = 35.7 bits (82), Expect = 0.19
Identities = 22/76 (28%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 1069 QTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVK-----PKPTTTVK 1123
QT E TT + PK P T+ T +P T + +P P T+T
Sbjct: 146 QTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPAATSTPA 205
Query: 1124 PKPT-TVKPKPVIPPS 1138
PK T T P P+
Sbjct: 206 PKETATTAPVQTASPA 221
Score = 32.6 bits (74), Expect = 1.4
Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 12/97 (12%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP-KP 1103
+P +++ ST+ T EP T P+ S T K T TTRP +
Sbjct: 107 QPQNQQQLNNVAVNSTLPT--EP-ATVAPVRNGNASRQT----AKTQTAERPATTRPARK 159
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK 1140
I+PK KP+ T +PKP PK P +
Sbjct: 160 QAVIEPK----KPQATAKTEPKPVAQTPKRTEPAAPV 192
Score = 32.2 bits (73), Expect = 2.2
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 14/63 (22%)
Query: 665 KQTSATTTSEQVP--------------KPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTS 710
+QT+ T T+E+ KP K T + P A + +
Sbjct: 140 RQTAKTQTAERPATTRPARKQAVIEPKKPQATAKTEPKPVAQTPKRTEPAAPVASTKAPA 199
Query: 711 TTT 713
T+
Sbjct: 200 ATS 202
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is a
family of proteins conserved in yeasts. The function is
not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 41.1 bits (96), Expect = 0.005
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 12/97 (12%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPI 1104
+ E+ S + T E E ++ + RPK T+ R P
Sbjct: 482 RDVWED-----APESQELVTTEETPEEVKSSSPGVTKPAIPSRPKKGK--PTSEKRKPPP 534
Query: 1105 TTIKPKPTT----VKPKPTTTVK-PKPTTVKPKPVIP 1136
KPKP K + + + KPKP +P
Sbjct: 535 VPKKPKPQIPARPAKLQKQQAGEEANSSAFKPKPRVP 571
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein. Members
of this family are the S-layer-forming halobacterial
major cell surface glycoprotein. The highest scores below
model cutoffs are fragmentary paralogs to actual members
of the family. Modifications include at N-linked and
O-linked glycosylation, a C-terminal diphytanylglyceryl
modification, and probable cleavage of the PGF-CTERM
tail.
Length = 782
Score = 40.6 bits (95), Expect = 0.006
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
G N + E +E TT T TT EE T T TTTT+ P TT
Sbjct: 697 GDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTGPEET--TETAEPTTTTEEPTEETT 754
Query: 1094 TSTTT 1098
T ++T
Sbjct: 755 TGSST 759
Score = 38.3 bits (89), Expect = 0.037
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Query: 1055 TVSTSTVVTTEEPEQT--EEPITTTTTSTTTTTKRPKPPTTTST-TTTRPKPITT 1106
V+ V TE P+ T E+P TTTT +TT T T+ TTT +P
Sbjct: 702 RVNVEVVEETERPDTTTSEDPTTTTTPTTTGPE----ETTETAEPTTTTEEPTEE 752
Score = 36.4 bits (84), Expect = 0.13
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 1048 SEESKPTTVSTSTVVTTEEPEQTEEPITT-TTTSTTTTTKRPKPPTTTSTTTT 1099
E +P T T+E+P T P TT +T T T TTT
Sbjct: 709 EETERPDTT------TSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTT 755
Score = 36.4 bits (84), Expect = 0.14
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 8/60 (13%)
Query: 1062 VTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTT 1121
V E E+TE P TTT+ TTT T T+T P TT +P TT
Sbjct: 703 VNVEVVEETERPDTTTSEDPTTT------TTPTTTGPEETTETAE--PTTTTEEPTEETT 754
Score = 36.0 bits (83), Expect = 0.18
Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 670 TTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSG 716
TTTSE PT T T P TTE P TT+ T +TT S
Sbjct: 716 TTTSED---PTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSST 759
Score = 32.2 bits (73), Expect = 2.5
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 1056 VSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP-PTTTSTTTTRPKPITTIKPKPTTV 1114
V S V T + ++ T + + +P TT+ TT P TT P+ TT
Sbjct: 680 VDLSDVETGNYTVEADDGDNTDRVNVEVVEETERPDTTTSEDPTTTTTPTTTG-PEETTE 738
Query: 1115 KPKPTTTVKPKPT 1127
+PTTT +PT
Sbjct: 739 TAEPTTTT-EEPT 750
Score = 32.2 bits (73), Expect = 3.0
Identities = 21/53 (39%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTT-STTTTTKRPKP 1090
TE T+ E PTT +T T EE +T EP TTT + TTT P
Sbjct: 709 EETERPDTTTSE-DPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760
Score = 31.0 bits (70), Expect = 6.7
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
Query: 687 TKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTT 735
T++P TTT +P TT +T TT+ T PT P E TT
Sbjct: 711 TERPDTTTSEDPTTTTTPTTTGPEETTE----TAEPTTTTEEPTEETTT 755
Score = 30.6 bits (69), Expect = 7.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
Query: 674 EQVPKP-TKKPTKPTKKPTTTTEY-NPPEATTKPSTTT---STTTDSGAWTP 720
E+ +P T PT T TT T +P+TTT + T +G+ TP
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTP 760
>gnl|CDD|217310 pfam02993, MCPVI, Minor capsid protein VI. This minor capsid protein
may act as a link between the external capsid and the
internal DNA-protein core. The C-terminal 11 residues may
function as a protease cofactor leading to enzyme
activation.
Length = 238
Score = 39.4 bits (92), Expect = 0.008
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 2/89 (2%)
Query: 1053 PTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPT 1112
T +P Q +P P+PP+ T P P+
Sbjct: 111 GEEEPAPQEETVADPIQALQPRPRPDVEEVLVPAAPEPPSYEETIKPGPAPVEEPVDSMA 170
Query: 1113 TVKPKP--TTTVKPKPTTVKPKPVIPPST 1139
P T++ P P PV+P +
Sbjct: 171 IAVPAIDTPVTLELPPAPQPPPPVVPQPS 199
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 39.0 bits (91), Expect = 0.010
Identities = 19/103 (18%), Positives = 27/103 (26%), Gaps = 4/103 (3%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
++T+ T + T + E P P + P
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK 1140
P+P PKPT K K T PKP +
Sbjct: 158 AKSPRPAAKAAPKPTETITAK----KAKKTAAAPKPTADKTAT 196
Score = 32.9 bits (75), Expect = 0.77
Identities = 29/108 (26%), Positives = 31/108 (28%), Gaps = 20/108 (18%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTT---------TTTKRPKPPTTTS 1095
K TS T + V T EP E PK P
Sbjct: 98 KATSMSEPATENKPAEVTTPVEPMGLPETPPAVPVPAPAPAVAAAAAQAAAAPKAPAKPR 157
Query: 1096 TTTTRP------KP---ITTIKPKPTTVKPKPTTTVKPKPT--TVKPK 1132
+ RP KP IT K K T PKPT P T K K
Sbjct: 158 AKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKK 205
>gnl|CDD|144411 pfam00802, Glycoprotein_G, Pneumovirus attachment glycoprotein G.
This family includes attachment proteins from
respiratory synctial virus. Glycoprotein G has not been
shown to have any neuraminidase or hemagglutinin
activity. The amino terminus is thought to be
cytoplasmic, and the carboxyl terminus extracellular.
The extracellular region contains four completely
conserved cysteine residues.
Length = 263
Score = 39.3 bits (91), Expect = 0.010
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 685 KPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTT-THISVTEK 743
KP K PTT P TTK T T TT A T +PT PT+ TT T+ + +
Sbjct: 184 KPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTS----EPTKLTTKTNTTTPQF 239
Query: 744 SPLD 747
+PL
Sbjct: 240 TPLS 243
Score = 35.0 bits (80), Expect = 0.20
Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTT---RPKP 1103
+S K T +T T T + + T +T+ TTT T P
Sbjct: 54 SSANHKVTPTTTPTQQITNQIQNHTSTYLTQHNQLSTSP--SNQSTTTPLIHTILDDTTP 111
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPT--TVKPKPVIPPS 1138
T + TTV K TT + KP+ PP
Sbjct: 112 GTKSTYQHTTVGTKGRTTTPAQTNKPPTKPRQSNPPE 148
Score = 34.7 bits (79), Expect = 0.33
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 659 PYRTKCKQTSATTTSEQVPKPTKKPTKP-TKKPTTTTEYNPPEATTKPSTTTSTTT 713
P + K + T + PK TKK TK T K T ++P TK +T T+TTT
Sbjct: 181 PEKKPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTNTTT 236
Score = 33.5 bits (76), Expect = 0.62
Identities = 22/49 (44%), Positives = 26/49 (53%), Gaps = 5/49 (10%)
Query: 1081 TTTTTKRPKPPTT---TSTTTTRPKPITTIKP--KPTTVKPKPTTTVKP 1124
TT TK+PKP TT T T TT+ K TT P +PT + K TT
Sbjct: 190 TTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTNTTTPQ 238
Score = 32.3 bits (73), Expect = 1.5
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 1082 TTTTKRPKPPTTTSTTTTRPKPITTIKP-KPTTVKPKPTTTVKP--KPTTVKPK 1132
K+P TT T +PKP TT K K T K K TT P +PT + K
Sbjct: 179 RIPEKKPGKAPTT-KPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTK 231
Score = 32.0 bits (72), Expect = 2.1
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 1050 ESKPTTVSTSTVVTTEEPEQTEEPITTTTTST--TTTTKRPKPPT--TTSTTTTRPK--P 1103
E KP T+ +P+ T++ T TT + TT PT TT T TT P+ P
Sbjct: 182 EKKPGKAPTTKPTKKPKPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTNTTTPQFTP 241
Query: 1104 ITTIKPKPT 1112
++T +
Sbjct: 242 LSTTTTRNP 250
Score = 30.4 bits (68), Expect = 6.1
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 652 KMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTK-----PTKKPTTTTEYNPPEATTKPS 706
K KT +T+ ++ TT +PTK TK P P +TT PE T++
Sbjct: 198 KPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTNTTTPQFTPLSTTTTRNPELTSQME 257
Query: 707 TTTSTT 712
T ST
Sbjct: 258 TFHSTN 263
Score = 30.4 bits (68), Expect = 6.9
Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 2/68 (2%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKP-KPTTTVKPKPTTVKPK 1132
I TTK K P TT K TT + TT P T + K T P+
Sbjct: 180 IPEKKPGKAPTTKPTKKP-KPKTTKKDTKTQTTKSKEATTHHPTSEPTKLTTKTNTTTPQ 238
Query: 1133 PVIPPSTK 1140
+T
Sbjct: 239 FTPLSTTT 246
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 39.9 bits (94), Expect = 0.011
Identities = 9/80 (11%), Positives = 11/80 (13%), Gaps = 4/80 (5%)
Query: 1063 TTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT----STTTTRPKPITTIKPKPTTVKPKP 1118
P T P + + P PKP
Sbjct: 34 ADYGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAA 93
Query: 1119 TTTVKPKPTTVKPKPVIPPS 1138
P P
Sbjct: 94 AAPAAPPAAAAAAAPAAAAV 113
Score = 35.6 bits (83), Expect = 0.27
Identities = 11/95 (11%), Positives = 13/95 (13%), Gaps = 9/95 (9%)
Query: 1042 EEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP 1101
+Y P T T+ P P
Sbjct: 34 ADYGPG-----STAAPTAAAAAAAAAASAPAAAPAAKAPAAPAP--APPAAAAPAAP--P 84
Query: 1102 KPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIP 1136
KP P V P
Sbjct: 85 KPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVTP 119
>gnl|CDD|221315 pfam11921, DUF3439, Domain of unknown function (DUF3439). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 46 to 94 amino acids in length. This domain is
found associated with pfam01462, pfam00560.
Length = 122
Score = 36.9 bits (85), Expect = 0.016
Identities = 18/28 (64%), Positives = 20/28 (71%), Gaps = 3/28 (10%)
Query: 1073 PITTTTTSTTTTTKRPKPPTTTSTTTTR 1100
P TTTTT+TTTTT P TTT TTT+
Sbjct: 46 PTTTTTTTTTTTT---MPTTTTLPTTTK 70
Score = 33.8 bits (77), Expect = 0.20
Identities = 23/47 (48%), Positives = 28/47 (59%), Gaps = 11/47 (23%)
Query: 1091 PTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPP 1137
PTTT+TTTT TT P TT+ PTTT K + VK P++PP
Sbjct: 46 PTTTTTTTT----TTTTMPTTTTL---PTTT---KMSMVK-VPLVPP 81
Score = 31.8 bits (72), Expect = 0.80
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 10/34 (29%)
Query: 1075 TTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK 1108
TTTTT+TTTTT P TTTT P TT K
Sbjct: 47 TTTTTTTTTTTTMP-------TTTTLP---TTTK 70
Score = 29.9 bits (67), Expect = 3.8
Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 7/47 (14%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP 1091
KP PTT +T+T TT P TTTT TTT K P
Sbjct: 38 KPVRSIICPTTTTTTTTTTTTMP-------TTTTLPTTTKMSMVKVP 77
Score = 29.9 bits (67), Expect = 4.2
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTT 1099
I TT+TTTTT PTTT+ TT
Sbjct: 43 IICPTTTTTTTTTTTTMPTTTTLPTT 68
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 39.2 bits (91), Expect = 0.022
Identities = 22/130 (16%), Positives = 39/130 (30%), Gaps = 2/130 (1%)
Query: 1011 AAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQT 1070
A P A +T + ES + P ++ + + P
Sbjct: 2769 PAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDP-ADPPAAVLAPAAALPPAASPAGP 2827
Query: 1071 EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
P T+ + P PP+ + P +P + KP +P P
Sbjct: 2828 LPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARP-PVRRL 2886
Query: 1131 PKPVIPPSTK 1140
+P + ST+
Sbjct: 2887 ARPAVSRSTE 2896
Score = 38.8 bits (90), Expect = 0.027
Identities = 20/98 (20%), Positives = 28/98 (28%), Gaps = 5/98 (5%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP-----PTTTSTTTT 1099
+P ++PT S +++ P T EP S T P P +
Sbjct: 2682 RPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAP 2741
Query: 1100 RPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPP 1137
P P +P TT P P P
Sbjct: 2742 PAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGP 2779
Score = 35.3 bits (81), Expect = 0.30
Identities = 18/134 (13%), Positives = 30/134 (22%), Gaps = 6/134 (4%)
Query: 1011 AAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQT 1070
+ + P + P PT+ + P
Sbjct: 2790 SLSESRESLPSPWDPADPPAAVLAPAAALPPAA-SPAGPLPPPTSAQPTAPPPPPGPPPP 2848
Query: 1071 EEPITTTTTSTTTTTKRP--KPPTTTSTTTTRPKPITTIKP---KPTTVKPKPTTTVKPK 1125
P+ + +RP + P RP +P + T P +
Sbjct: 2849 SLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERP 2908
Query: 1126 PTTVKPKPVIPPST 1139
P P P P
Sbjct: 2909 PQPQAPPPPQPQPQ 2922
Score = 31.4 bits (71), Expect = 4.8
Identities = 23/129 (17%), Positives = 34/129 (26%), Gaps = 4/129 (3%)
Query: 1011 AAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQT 1070
AAA A + + GP PT+ + P + P +
Sbjct: 2726 AAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTT--AGPPAPAPPAAPAAGPPRRL 2783
Query: 1071 EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
P + + + + P P P P P PT+ P
Sbjct: 2784 TRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPP-- 2841
Query: 1131 PKPVIPPST 1139
P PPS
Sbjct: 2842 PPGPPPPSL 2850
Score = 31.4 bits (71), Expect = 5.2
Identities = 21/126 (16%), Positives = 35/126 (27%), Gaps = 4/126 (3%)
Query: 1012 AAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTE 1071
AP P ++ PGG+ P ++ + P + TE
Sbjct: 2837 TAPPPPPGPPPPSLPLGGSVAPGGDVRRRPPSRSPAAKPAAPARPPVRRLARPAVSRSTE 2896
Query: 1072 E-PITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKP---TTVKPKPTTTVKPKPT 1127
+ + P PP P+P P P + P +P+
Sbjct: 2897 SFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEPS 2956
Query: 1128 TVKPKP 1133
P+P
Sbjct: 2957 GAVPQP 2962
Score = 30.7 bits (69), Expect = 9.5
Identities = 17/94 (18%), Positives = 25/94 (26%), Gaps = 5/94 (5%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
P S T PE+ + S +R S+ RP+
Sbjct: 2628 PPSPSPAANEPDPHPPPTVPPPERPRDDPAPGRVSRPRRARRLGRAAQASSPPQRPRR-- 2685
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+ TV T+ P P P+P
Sbjct: 2686 --RAARPTVGSL-TSLADPPPPPPTPEPAPHALV 2716
>gnl|CDD|237015 PRK11901, PRK11901, hypothetical protein; Reviewed.
Length = 327
Score = 38.5 bits (90), Expect = 0.024
Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 1077 TTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIP 1136
T +T +K K P T T T P+ T KP T V P + KPK
Sbjct: 176 TAPATVAPSKGAKVPATAETHPTPPQKPATKKP-AVNHHKTATVAVPPATSG-KPKSGAA 233
Query: 1137 PST 1139
+
Sbjct: 234 SAR 236
Score = 33.1 bits (76), Expect = 0.96
Identities = 13/63 (20%), Positives = 16/63 (25%), Gaps = 4/63 (6%)
Query: 1052 KPTTVSTSTVVTTEEPEQTEEPITTTTTSTTT--TTKRPKPPTTTSTTTTRPKPITTIKP 1109
P TV+ S + P E T T K T T KP +
Sbjct: 177 APATVAPSK--GAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAAS 234
Query: 1110 KPT 1112
Sbjct: 235 ARA 237
Score = 33.1 bits (76), Expect = 1.2
Identities = 11/68 (16%), Positives = 16/68 (23%), Gaps = 1/68 (1%)
Query: 1072 EPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTT-VKPKPTTTVKPKPTTVK 1130
P T + + T KP T V P + K + +
Sbjct: 177 APATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPATSGKPKSGAASAR 236
Query: 1131 PKPVIPPS 1138
P S
Sbjct: 237 ALSSAPAS 244
Score = 31.2 bits (71), Expect = 4.4
Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 3/70 (4%)
Query: 1058 TSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPK 1117
TST+ T + T+ T T KP T + P K
Sbjct: 171 TSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTATVAVPPAT---SGK 227
Query: 1118 PTTTVKPKPT 1127
P +
Sbjct: 228 PKSGAASARA 237
Score = 30.8 bits (70), Expect = 5.1
Identities = 15/57 (26%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 661 RTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGA 717
T A + PT TKKP AT TS SGA
Sbjct: 179 ATVAPSKGAKVPATAETHPTPPQKPATKKPAVNH---HKTATVAVPPATSGKPKSGA 232
Score = 30.4 bits (69), Expect = 6.5
Identities = 12/47 (25%), Positives = 15/47 (31%)
Query: 1094 TSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK 1140
TST T P + K + T KP T KP +
Sbjct: 171 TSTLPTAPATVAPSKGAKVPATAETHPTPPQKPATKKPAVNHHKTAT 217
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 38.8 bits (90), Expect = 0.026
Identities = 22/104 (21%), Positives = 36/104 (34%), Gaps = 17/104 (16%)
Query: 1050 ESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTK---------RPKPPTTTSTTTTR 1100
++ TT + + T + + I+ T S+ TK P T+
Sbjct: 303 KNNLTTPQGTVLEHTPATSEGQVTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIA 362
Query: 1101 PKPITTIKPKPTTVKPKPTT-TVKPKPTT-------VKPKPVIP 1136
++ P+T P T V+ TT VKP P +P
Sbjct: 363 SATFRGLEKNPSTAPSTPATPRVRAVLTTQVHHCVVVKPAPAVP 406
Score = 34.2 bits (78), Expect = 0.61
Identities = 27/118 (22%), Positives = 38/118 (32%), Gaps = 25/118 (21%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPE------QTEEPITTTTTSTTTTT--------KRPKPPT 1092
TSE T+S T + E + + P++ T+ K P
Sbjct: 320 TSEGQ--VTISIMTGSSPAETKASTAAWKIRNPLSRTSAPAVRIASATFRGLEKNPSTAP 377
Query: 1093 TTSTT-TTRPKPIT------TIKPKPTT-VKPKPTTTVKPKPTTVKPKP-VIPPSTKD 1141
+T T R T +KP P P P+ T P P P +PP D
Sbjct: 378 STPATPRVRAVLTTQVHHCVVVKPAPAVPTTPSPSLTTALFPEAPSPSPSALPPGQPD 435
>gnl|CDD|226000 COG3469, COG3469, Chitinase [Carbohydrate transport and metabolism].
Length = 332
Score = 37.9 bits (88), Expect = 0.033
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 1197 DLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN 1256
D D +F +V AL +G V L++GG + + L Q+ F+ ++ I +
Sbjct: 82 DPDAEFRAQVGALNAEGKAVLLSLGG-----ADGHIELKAGQEQ--AFVNEIIRLIETYG 134
Query: 1257 FDGLDLDWE 1265
FDGLD+D E
Sbjct: 135 FDGLDIDLE 143
Score = 34.9 bits (80), Expect = 0.32
Identities = 47/201 (23%), Positives = 81/201 (40%), Gaps = 28/201 (13%)
Query: 804 DFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQ 863
D D F +V L +G V L SLGG + A Q F+ +++ + Y
Sbjct: 82 DPDAEFRAQVGALNAEGKAVLL-------SLGGADGHIELKAGQEQAFVNEIIRLIETYG 134
Query: 864 FDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINA 923
FDGLD+D E A + + V++ ++ + + A P Q
Sbjct: 135 FDGLDIDLEQSA----ILAADNQTVIPAALKAVKDHYKNQGKNFFITMAPEFPYLQG-WG 189
Query: 924 AYD--VKALSESLDWISVMTYDYHGQ--WDKKTGHVAPLYEHPD---DDFFYFN----AN 972
AY + L + D+I+ Y+ G W ++ A + ++ D + F Y+ AN
Sbjct: 190 AYIPYINELRDYYDFIAPQLYNQGGDGNWVTESN--AWIAQNNDMVKESFLYYLTFSLAN 247
Query: 973 FTMNYWMKKGAPSRKLVMGMP 993
T + + P+ K +G+P
Sbjct: 248 GTRGF---EKIPADKFAIGLP 265
Score = 31.4 bits (71), Expect = 4.1
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 208 VSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFI 267
+ + + +E F++ ++ + + Y FDGLD+ DLE A +D T I
Sbjct: 112 IELKAGQEQ--AFVNEIIRLIETYGFDGLDI-------------DLEQSAILAADNQTVI 156
Query: 268 QELSSTLR 275
++
Sbjct: 157 PAALKAVK 164
>gnl|CDD|225805 COG3266, DamX, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 292
Score = 37.6 bits (87), Expect = 0.040
Identities = 16/80 (20%), Positives = 21/80 (26%), Gaps = 8/80 (10%)
Query: 1073 PITTTTTSTTTTTKRPKPPTTTSTTTTRP-------KPITTIKP-KPTTVKPKPTTTVKP 1124
T +T + PT TRP +P K K T T P
Sbjct: 126 STLPTEPATVAPVRNASVPTAERPAITRPVRAQAVSEPAVEPKAAKTATATEAKVQTASP 185
Query: 1125 KPTTVKPKPVIPPSTKDEFK 1144
T P + + K
Sbjct: 186 AQTPATPPAGKGAAASGQLK 205
>gnl|CDD|223031 PHA03273, PHA03273, envelope glycoprotein C; Provisional.
Length = 486
Score = 38.1 bits (88), Expect = 0.040
Identities = 19/103 (18%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 1028 VLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKR 1087
+L + G + S+ E ++ E + T + + + +T + T +T +
Sbjct: 21 ILTYASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQ 80
Query: 1088 PKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
P + TT T K + ++ P +V TT+V + +
Sbjct: 81 ASQPHSHETTITCTKSLISV-PYYKSVDMNCTTSVGVNYSEYR 122
Score = 35.0 bits (80), Expect = 0.31
Identities = 15/77 (19%), Positives = 24/77 (31%)
Query: 1055 TVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTV 1114
ST + E + + + +T + T TT P T T + T + +
Sbjct: 25 ASGASTSSSIENSDNSTAEMQSTPATPTHTTSNLTSPFGTGTDNSTNANGTESTTQASQP 84
Query: 1115 KPKPTTTVKPKPTTVKP 1131
TT K P
Sbjct: 85 HSHETTITCTKSLISVP 101
>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein
UL32. The large phosphorylated protein (UL32-like) of
herpes viruses is the polypeptide most frequently
reactive in immuno-blotting analyses with antisera when
compared with other viral proteins.
Length = 777
Score = 37.6 bits (87), Expect = 0.056
Identities = 21/140 (15%), Positives = 36/140 (25%), Gaps = 10/140 (7%)
Query: 1010 NAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQ 1069
+AP + + G + E + S +V + +
Sbjct: 475 RVSAPASRLDDAKRPEVTATPESSGSDSEGGASGRE-DETSSDAESVVSIKELRPRIGFI 533
Query: 1070 TEEPITTTTTSTTTTTKRPKPPTTTSTT-TTRPKPI---TTIKPKPTTVKPKPTTT---- 1121
+ P + + T + ST + RPKP I P T
Sbjct: 534 NKSPPPKSPPKSRRTLIVALSLASPSTAGSPRPKPSLGKFVIGTDPFAFANTVRLTDNMR 593
Query: 1122 -VKPKPTTVKPKPVIPPSTK 1140
++VKPK
Sbjct: 594 GGNGVGSSVKPKGSASSKPL 613
>gnl|CDD|217603 pfam03537, DUF297, TM1410 hypothetical-related protein.
Length = 203
Score = 36.5 bits (85), Expect = 0.063
Identities = 35/202 (17%), Positives = 66/202 (32%), Gaps = 59/202 (29%)
Query: 1151 NWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALK 1210
+WA+Y Y + ++L D +VI D + ++ ALK
Sbjct: 1 SWAFY------YGGALPVAELDAF----------DVVVI-------DPFSFSKAEIAALK 37
Query: 1211 KKGVKV---------------------TLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVV 1249
G KV + G G ++ + S R + +
Sbjct: 38 AAGTKVIAYLSVGEVEDWRPDASQFPKSWLGGENPGWPGERWVD-IRSPAWRDIIMDARL 96
Query: 1250 NFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSP 1309
+ + FDG+ LD +Q G LI+EL A L +
Sbjct: 97 DRLWAKGFDGVFLDN--VDSYQNANGTGRPLTAADLVALIRELAARA--PGLAI------ 146
Query: 1310 SKAVIDNAYDI-PVMSENLDWI 1330
+++N +++ P ++ +D +
Sbjct: 147 ---ILNNGFELLPALAPLVDGV 165
Score = 30.3 bits (69), Expect = 5.8
Identities = 34/175 (19%), Positives = 59/175 (33%), Gaps = 50/175 (28%)
Query: 793 NLIIKAHDSWADFD--NRFYERVVTLKKKGVKV--SLAIGGWNDS-----------LGGK 837
+ D + + LK G KV L++G D LGG+
Sbjct: 11 PVAELDAFDVVVIDPFSFSKAEIAALKAAGTKVIAYLSVGEVEDWRPDASQFPKSWLGGE 70
Query: 838 YS-----RLVN--SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKE 890
R V+ S R ++ + L FDG+ LD N D+ +++
Sbjct: 71 NPGWPGERWVDIRSPAWRDIIMDARLDRLWAKGFDGVFLD---------NVDSYQNANGT 121
Query: 891 SFGL-------FVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVK-ALSESLDWI 937
L +REL GL + ++N +++ AL+ +D +
Sbjct: 122 GRPLTAADLVALIRELAARA--PGLAI---------ILNNGFELLPALAPLVDGV 165
>gnl|CDD|221145 pfam11596, DUF3246, Protein of unknown function (DUF3246). This is a
small family of fungal proteins one of whose members from
Pichia stipitis is described as being an extremely serine
rich protein-mucin-like protein.
Length = 208
Score = 36.3 bits (83), Expect = 0.068
Identities = 24/84 (28%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 1052 KPTTVSTSTVVTT--------EEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP 1103
PT ++ TVV T ++ E I+ TT TT T PT T TT
Sbjct: 72 DPTGTTSQTVVPTKPTTTDDDDDTTCVETTISDPTTITTPTGTVNGNPTGT--VTTNGTA 129
Query: 1104 ITTIKPKPTTVKPKPTTTVKPKPT 1127
TT+ V T T + T
Sbjct: 130 TTTVITTVEGVAVTYTGTGQTFTT 153
Score = 34.4 bits (78), Expect = 0.32
Identities = 26/105 (24%), Positives = 31/105 (29%), Gaps = 15/105 (14%)
Query: 1053 PTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK---- 1108
PT +T +E E T T T TT P TTS T KP TT
Sbjct: 40 PTGSATDDDDYDDEETDCEGQTTANPTGTVTT----DPTGTTSQTVVPTKPTTTDDDDDT 95
Query: 1109 -------PKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIV 1146
PTT+ T TV + + V
Sbjct: 96 TCVETTISDPTTITTPTGTVNGNPTGTVTTNGTATTTVITTVEGV 140
Score = 30.9 bits (69), Expect = 4.0
Identities = 27/109 (24%), Positives = 34/109 (31%), Gaps = 6/109 (5%)
Query: 651 DKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTS 710
D+ C+ + TT T PTKPT + E T TT +
Sbjct: 52 DEETDCEGQTTAN-PTGTVTTDPTGTTSQTVVPTKPTTT-DDDDDTTCVETTISDPTTIT 109
Query: 711 TTTDSGAWTPNPTEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYFTNW 759
T T G NPT V T TT +V + FT
Sbjct: 110 TPT--GTVNGNPTGTVTTNGTATTTVITTVEGVAVTYTGTGQT--FTTD 154
Score = 30.5 bits (68), Expect = 4.7
Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 1045 KPTSEESKPTTVSTSTVVTT---EEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP 1101
T E T T TT E+ E +E T TTT T T T + T
Sbjct: 134 ITTVEGVAVTYTGTGQTFTTDGTEDDEDCDETTTYTTTYYTPYTTVIHGGTVYTNGVT-- 191
Query: 1102 KPITTIKPKPTTVKP 1116
I T PT V+
Sbjct: 192 -VIATHTVYPTDVED 205
Score = 29.7 bits (66), Expect = 9.8
Identities = 26/96 (27%), Positives = 30/96 (31%), Gaps = 9/96 (9%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
E+ E + TT T T T P +P TT TT + TT TT
Sbjct: 54 ETDCEGQTTANPTGTVTTDPTGTTSQTVVPT---KPTTTDDDDDTTCVETTISDPTTITT 110
Query: 1098 TTRPKPITTIKPKPTTV--KPKPTTTVKPKPTTVKP 1131
T T TV TTTV V
Sbjct: 111 PTG----TVNGNPTGTVTTNGTATTTVITTVEGVAV 142
>gnl|CDD|221091 pfam11355, DUF3157, Protein of unknown function (DUF3157). This
family of proteins with unknown function appears to be
restricted to Gammaproteobacteria.
Length = 197
Score = 35.9 bits (83), Expect = 0.078
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTE-EPEQTEEPITTTTTSTTTTTKRPKPPTTTS 1095
T EY ++ T ++ + ++ P P+ T TT TT +PK S
Sbjct: 39 TWEYVILETQTTATAATSQSAASSSAAPAVVAIPVATATTLTTIALAQPKLLLQLS 94
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 36.2 bits (84), Expect = 0.082
Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 27/84 (32%)
Query: 1066 EPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPK 1125
EPE EPI P+PP + P+ KP+P KPKP KPK
Sbjct: 73 EPEPEPEPI-------------PEPP--------KEAPVVIPKPEP---KPKPKPKPKPK 108
Query: 1126 P---TTVKPKPVIPPSTKDEFKIV 1146
P +PK + P
Sbjct: 109 PVKKVEEQPKREVKPVEPRPASPF 132
Score = 30.8 bits (70), Expect = 5.0
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 677 PKPTKKPTKPTKKPTTTTEYNP--PEATTKPSTTTSTTTDSGAWTPNPTE 724
PKP KK + K+ E P P T P+ TS+T + A P +
Sbjct: 107 PKPVKKVEEQPKREVKPVEPRPASPFENTAPARPTSSTATAAASKPVTSV 156
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 36.5 bits (84), Expect = 0.089
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTI---KPKPTTVKPKPTTTVKPKPTTVK 1130
ITTTT + TT P +T P T + + KP P T P+ T
Sbjct: 21 ITTTTQAANATT----PSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQT--- 73
Query: 1131 PKPVIPPSTKDE 1142
P P STK E
Sbjct: 74 PNATTPSSTKVE 85
Score = 35.8 bits (82), Expect = 0.13
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 2/89 (2%)
Query: 1055 TVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP-ITTIKPKPTT 1113
T T T T +T + + + P + TT P + + P
Sbjct: 17 TTGVITTTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNA 76
Query: 1114 VKPKPTTTVKPK-PTTVKPKPVIPPSTKD 1141
P T P+ PTT + I P KD
Sbjct: 77 TTPSSTKVETPQSPTTKQVPTEINPKFKD 105
Score = 34.6 bits (79), Expect = 0.35
Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 1039 STTEEYKPTSEESKP--TTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST 1096
+TT+ T+ S ST E P+ T +T + P T +ST
Sbjct: 23 TTTQAANATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSST 82
Query: 1097 TTTRPKPITTIKPKPTTVKPK 1117
P+ TT K PT + PK
Sbjct: 83 KVETPQSPTT-KQVPTEINPK 102
Score = 32.7 bits (74), Expect = 1.2
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
+ST K + +SKP +T E P+QT TT ++T + P+ PTT
Sbjct: 42 QSTPPSTKVEAPQSKPN-ATTPPSTKVEAPQQTPNA----TTPSSTKVETPQSPTTKQVP 96
Query: 1098 TT---RPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIP 1136
T + K + KP+ + K TT++ V+P
Sbjct: 97 TEINPKFKDLRAYYTKPSLEFKNEIGIILKKWTTIRFMNVVP 138
Score = 32.3 bits (73), Expect = 1.6
Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 21/95 (22%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNP----PEATTKPSTTTSTTTDSGAWTPNP 722
+S + Q P+ K P KP TT + P+ T +T +ST ++
Sbjct: 34 SSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVET------- 86
Query: 723 TEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYFT 757
P PTT + TE +P ++ + Y+T
Sbjct: 87 -------PQSPTTKQVP-TEINP--KFKDLRAYYT 111
>gnl|CDD|217490 pfam03318, ETX_MTX2, Clostridium epsilon toxin ETX/Bacillus
mosquitocidal toxin MTX2. This family appears to be
distantly related to pfam01117.
Length = 228
Score = 35.9 bits (83), Expect = 0.091
Identities = 29/103 (28%), Positives = 38/103 (36%), Gaps = 26/103 (25%)
Query: 1036 NYESTTEEYKPTS-EESKPTTVSTSTV------VTTEE----PEQTEEPITTTTT----S 1080
N +T+ + S + TT ST+T P E IT + T
Sbjct: 38 NNTDSTQTLQTQSFSKKVTTTTSTTTTHGFKIGAKASGKFGIPFVAEGGITLSVTGEYNF 97
Query: 1081 TTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
++TTT TTSTT T T + TV P T TV
Sbjct: 98 SSTTT------NTTSTTET-----YTAPSQKVTVPPHTTVTVT 129
>gnl|CDD|178748 PLN03209, PLN03209, translocon at the inner envelope of chloroplast
subunit 62; Provisional.
Length = 576
Score = 36.4 bits (84), Expect = 0.11
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 11/81 (13%)
Query: 1072 EPITTTTTSTTTT--------TKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
E I TT T ++R P + + +P P + P+ + +
Sbjct: 304 EVIAETTAPLTPMEELLAKIPSQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEE---P 360
Query: 1124 PKPTTVKPKPVIPPSTKDEFK 1144
P+P V P+P+ P + ++ K
Sbjct: 361 PQPKAVVPRPLSPYTAYEDLK 381
Score = 35.7 bits (82), Expect = 0.19
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 12/99 (12%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRP----------KPPTTTS 1095
PT+ +VS+++ V P+ T + RP KPPT+ S
Sbjct: 455 PTAPTGVSPSVSSTSSV-PAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLKPPTSPS 513
Query: 1096 TTTTRPKPITTIKPK-PTTVKPKPTTTVKPKPTTVKPKP 1133
K + + P T + + +PKP
Sbjct: 514 PAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKP 552
Score = 31.0 bits (70), Expect = 5.0
Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 12/107 (11%)
Query: 1045 KPTSEESKPTTVSTSTVVTTE---EPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP 1101
KP + P+ S S V E + P+ S + KPPT+ S T
Sbjct: 406 KPAEPDVVPSPGSASNVPEVEPAQVEAKKTRPL-----SPYARYEDLKPPTSPSPTAPTG 460
Query: 1102 KPITTIKPKPTT----VKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
+ P T P +P+ P + D+ K
Sbjct: 461 VSPSVSSTSSVPAVPDTAPATAATDAAAPPPANMRPLSPYAVYDDLK 507
Score = 31.0 bits (70), Expect = 5.5
Identities = 22/125 (17%), Positives = 36/125 (28%), Gaps = 26/125 (20%)
Query: 1042 EEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST----- 1096
E+ KP + S PT + + + P T T+ T PP
Sbjct: 445 EDLKPPTSPS-PTAPTGVSPSVSSTSSVPAVPDTAPATAATDA---AAPPPANMRPLSPY 500
Query: 1097 -------TTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTV----------KPKPVIPPST 1139
T P P + + + P T KP+P+ P +
Sbjct: 501 AVYDDLKPPTSPSPAAPVGKVAPSSTNEVVKVGNSAPPTALADEQHHAQPKPRPLSPYTM 560
Query: 1140 KDEFK 1144
++ K
Sbjct: 561 YEDLK 565
Score = 30.7 bits (69), Expect = 7.0
Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Query: 1059 STVVTTEEPEQTEEPITTTTTSTT---TTTKRPKPPTTTSTTTTRP-KPITT---IKPKP 1111
S V +E + + P T T + + P RP P T +KP P
Sbjct: 325 SQRVPPKESDAADGPKPVPTKPVTPEAPSPPIEEEPPQPKAVVPRPLSPYTAYEDLKP-P 383
Query: 1112 TTVKPKPTTTVKPKPTTV 1129
T+ P P ++ +V
Sbjct: 384 TSPIPTPPSSSPASSKSV 401
>gnl|CDD|183756 PRK12799, motB, flagellar motor protein MotB; Reviewed.
Length = 421
Score = 35.8 bits (82), Expect = 0.15
Identities = 25/124 (20%), Positives = 42/124 (33%), Gaps = 3/124 (2%)
Query: 1008 GLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVV--TTE 1065
+ P A V P + S + +S TT +++ +
Sbjct: 294 DTHGTVPVAAVTPSSAVTQSSAITPSSAAIPSPAVIPSSVTTQSATTTQASAVALSSAGV 353
Query: 1066 EPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKP-KPTTTVKP 1124
P P T + +P+P +TT T + IT+ PTT P P + +
Sbjct: 354 LPSDVTLPGTVALPAAEPVNMQPQPMSTTETQQSSTGNITSTANGPTTSLPAAPASNIPV 413
Query: 1125 KPTT 1128
PT+
Sbjct: 414 SPTS 417
Score = 31.6 bits (71), Expect = 3.2
Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 2/70 (2%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
+SA T S + + P P++ T TT+ S ++ V
Sbjct: 307 SSAVTQSSAITPSSAAIPSPAVIPSSVT--TQSATTTQASAVALSSAGVLPSDVTLPGTV 364
Query: 727 WHPPTEPTTT 736
P EP
Sbjct: 365 ALPAAEPVNM 374
>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 36.1 bits (84), Expect = 0.18
Identities = 10/72 (13%), Positives = 16/72 (22%)
Query: 1071 EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
+ + + P + K TT P P P P +
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 1131 PKPVIPPSTKDE 1142
P P +
Sbjct: 421 PTEPSPTPPANA 432
Score = 35.7 bits (83), Expect = 0.19
Identities = 16/77 (20%), Positives = 23/77 (29%)
Query: 1067 PEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKP 1126
+T P + T P+P T T P P T + P + P P
Sbjct: 520 TAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSSPPPP 579
Query: 1127 TTVKPKPVIPPSTKDEF 1143
+P P + E
Sbjct: 580 IPEEPTPSPTKDSSPEE 596
Score = 35.3 bits (82), Expect = 0.26
Identities = 11/76 (14%), Positives = 16/76 (21%), Gaps = 1/76 (1%)
Query: 1067 PEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKP 1126
P I + T P + PK P
Sbjct: 361 PSAFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAE 420
Query: 1127 TTVKPKPVIPPSTKDE 1142
T +P P P + +
Sbjct: 421 PT-EPSPTPPANAANA 435
Score = 35.3 bits (82), Expect = 0.26
Identities = 12/83 (14%), Positives = 17/83 (20%), Gaps = 8/83 (9%)
Query: 1059 STVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKP 1118
S + P + T T P P P V +P
Sbjct: 366 SEIANASAPANPTPAPNPSPPPAP----IQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421
Query: 1119 TTTVKPKPTTVKPKPVIPPSTKD 1141
T T P + +
Sbjct: 422 TEP----SPTPPANAANAPPSLN 440
Score = 34.9 bits (81), Expect = 0.38
Identities = 14/85 (16%), Positives = 21/85 (24%), Gaps = 1/85 (1%)
Query: 1049 EESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK 1108
E + +T+ + T T T P PP T T+ +
Sbjct: 511 ESQSGSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPP-PPPPTATQASSNAPAQ 569
Query: 1109 PKPTTVKPKPTTTVKPKPTTVKPKP 1133
+ P P T P
Sbjct: 570 IPADSSPPPPIPEEPTPSPTKDSSP 594
Score = 32.6 bits (75), Expect = 1.7
Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 3/84 (3%)
Query: 666 QTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEW 725
++ T K P P T PP P T T ++++ A P +
Sbjct: 517 ASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADSS- 575
Query: 726 VWHPPTEPTTTHISVTEKSPLDQY 749
PP P S T+ S ++
Sbjct: 576 --PPPPIPEEPTPSPTKDSSPEEI 597
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this family
are typically between 146 and 237 amino acids in length.
There are two conserved sequence motifs: QYGP and PKLY.
Length = 155
Score = 34.3 bits (79), Expect = 0.20
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 5/62 (8%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
EE E EE T T P+ T + R P + + +PK K
Sbjct: 96 DEEEETEEES-----TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Query: 1124 PK 1125
PK
Sbjct: 151 PK 152
Score = 32.4 bits (74), Expect = 0.85
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%)
Query: 1043 EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPK 1102
E + +E + +T+E EQ + P T T + + PKP T T PK
Sbjct: 90 ELSSSDDEE-----EETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPK 144
Query: 1103 PITTIKPK 1110
KPK
Sbjct: 145 KPKPSKPK 152
Score = 31.3 bits (71), Expect = 2.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 1078 TTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTT-VKPKPTTVKPKPVIP 1136
++S + + T + P+ T K K PKP T KPK KPKP P
Sbjct: 92 SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKP 151
Score = 30.5 bits (69), Expect = 3.1
Identities = 12/62 (19%), Positives = 17/62 (27%)
Query: 1050 ESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKP 1109
E + E +E T T + KR P T + +P
Sbjct: 90 ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Query: 1110 KP 1111
KP
Sbjct: 150 KP 151
Score = 29.7 bits (67), Expect = 5.6
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 1071 EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
+E T ST T + P T T + + + + PKP T K KP T
Sbjct: 96 DEEEETEEESTDETEQEDPPETKTESKEKKKREV----PKPKTEKEKPKTE--------- 142
Query: 1131 PKPVIPPSTK 1140
PK P K
Sbjct: 143 PKKPKPSKPK 152
>gnl|CDD|180536 PRK06347, PRK06347, autolysin; Reviewed.
Length = 592
Score = 35.8 bits (82), Expect = 0.20
Identities = 30/126 (23%), Positives = 39/126 (30%), Gaps = 9/126 (7%)
Query: 1003 NSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVV 1062
N A AGV + ++IT PG + +E P E SK S
Sbjct: 19 NKKSKKFKTGATIAGVTAIATSITV-----PGIEVIVSADETAPADEASK----SAEANT 69
Query: 1063 TTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTV 1122
T E P TT T T+ + T K + +P TV T
Sbjct: 70 TKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAAKQVEKAPAEPATVSNPDNATS 129
Query: 1123 KPKPTT 1128
P T
Sbjct: 130 SSTPAT 135
Score = 30.8 bits (69), Expect = 6.8
Identities = 14/72 (19%), Positives = 24/72 (33%)
Query: 651 DKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTS 710
D+ D ++ T+ + P+ T +PT K+ T + PE +
Sbjct: 53 DETAPADEASKSAEANTTKEAPATATPENTTEPTVEPKQTETKEQTKTPEEKQPAAKQVE 112
Query: 711 TTTDSGAWTPNP 722
A NP
Sbjct: 113 KAPAEPATVSNP 124
>gnl|CDD|118131 pfam09595, Metaviral_G, Metaviral_G glycoprotein. This is a viral
attachment glycoprotein from region G of metaviruses. It
is high in serine and threonine suggesting it is highly
glycosylated.
Length = 183
Score = 34.6 bits (79), Expect = 0.20
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 6/99 (6%)
Query: 1046 PTSEESKPT-TVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRP--KPPTTTSTTTTRPK 1102
P +E SK T T T T + + T ++T T++ PT+T TT R +
Sbjct: 35 PPTESSKKTPTTPTDNPDTNPNSQHPTQQSTESSTLPAATSESHLETEPTSTPDTTNRQQ 94
Query: 1103 PI--TTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+ T P + + K K T + PP+T
Sbjct: 95 TVDRHTTPPSSSRTQTTQAVHEK-KNTRTTSRTQTPPTT 132
Score = 34.6 bits (79), Expect = 0.22
Identities = 21/92 (22%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 1051 SKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTI--- 1107
++ TV T + QT + + + TT+ + P T+T+ T T+
Sbjct: 91 NRQQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPPTTSTAAVQTTTTTNTSSTGK 150
Query: 1108 KPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+P T+V+P+ + T + T + P ST
Sbjct: 151 EPTTTSVQPRSSATTQSHEETSQANPQSSAST 182
Score = 31.1 bits (70), Expect = 2.5
Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 1/93 (1%)
Query: 1037 YESTTEEYKPTSEESKP-TTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTS 1095
+T+E + T S P TT TV P + TT T+ T
Sbjct: 71 PAATSESHLETEPTSTPDTTNRQQTVDRHTTPPSSSRTQTTQAVHEKKNTRTTSRTQTPP 130
Query: 1096 TTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
TT+T TT +T K TT+V+P+ +
Sbjct: 131 TTSTAAVQTTTTTNTSSTGKEPTTTSVQPRSSA 163
Score = 30.4 bits (68), Expect = 4.6
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 671 TTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPP 730
TSE + PT+ +KK TT NP T P++ T + + T H
Sbjct: 24 NTSESEHHTSSPPTESSKKTPTTPTDNP---DTNPNSQHPTQQSTESSTLPAATSESHLE 80
Query: 731 TEPTTT 736
TEPT+T
Sbjct: 81 TEPTST 86
>gnl|CDD|183558 PRK12495, PRK12495, hypothetical protein; Provisional.
Length = 226
Score = 34.5 bits (79), Expect = 0.29
Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 1040 TTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTT 1099
T S+ S + E E ++ +ST+ T + P T
Sbjct: 84 ATAPSDAGSQASPDDDAQPAA-----EAEAADQSAPPEASSTSATDEAATDPPAT--AAA 136
Query: 1100 RPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
R P +P T + + +P + P P P +
Sbjct: 137 RDGPTPDPTAQPATPDERRSPRQRPPVSGEPPTPSTPDAHVAG 179
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 35.2 bits (80), Expect = 0.31
Identities = 23/78 (29%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 1055 TVSTSTVVTTEEP--EQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK--PK 1110
T + V TE P E+ P+ T+T T T K TTT T P K P
Sbjct: 249 TATPKAEVKTEAPAAEKQAAPVVKENTNTNTATTEKKE-TTTQQQTAPKAPTEAAKPAPA 307
Query: 1111 PTTVKPKPTTTVKPKPTT 1128
P+T T T
Sbjct: 308 PSTNTNANKTNTNTNTNT 325
Score = 34.8 bits (79), Expect = 0.37
Identities = 25/97 (25%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTST---VVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT 1094
E TE P +E+ V +T TTE+ E T + T T P P T T
Sbjct: 255 EVKTE--APAAEKQAAPVVKENTNTNTATTEKKETTTQQQTAPKAPTEAAKPAPAPSTNT 312
Query: 1095 STTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKP 1131
+ T T T+ K T T T
Sbjct: 313 NANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTNTNS 349
Score = 32.1 bits (72), Expect = 2.3
Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 662 TKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPP---EATTKPSTTTST-TTDSGA 717
T +Q +A + KP P+ T T T N T+ PS T+T T +
Sbjct: 287 TTTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNTNSNTN 346
Query: 718 WTPN 721
N
Sbjct: 347 TNSN 350
Score = 31.3 bits (70), Expect = 4.0
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 670 TTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPT 723
TT + PK + KP P+T T N T +T + T+ T T
Sbjct: 288 TTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNTNTNT 341
Score = 31.3 bits (70), Expect = 4.9
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 2/74 (2%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITT 1106
+ E K TT T + P + +P +T+T T T+ T T T
Sbjct: 280 ATTEKKETTTQQQT--APKAPTEAAKPAPAPSTNTNANKTNTNTNTNTNNTNTSTPSKNT 337
Query: 1107 IKPKPTTVKPKPTT 1120
+ T
Sbjct: 338 NTNTNSNTNTNSNT 351
Score = 30.9 bits (69), Expect = 5.2
Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Query: 1070 TEEPITTTT-TSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
T P+ T TTT++ P T T + TT PK K P
Sbjct: 144 TSTPVAPTQEVKKETTTQQAAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHA 203
Query: 1129 VK 1130
VK
Sbjct: 204 VK 205
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 35.2 bits (80), Expect = 0.34
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 666 QTSATTTSEQVPKPTKK-PTKPTKKPTTTTEYNPPE------ATTKPSTTTSTTTDSGAW 718
+T A T +E+ P+PT+ TKPT P +T E N PE A S T STT
Sbjct: 283 ETVAETKAEEEPQPTQTVETKPTSAPESTVEENLPEINQPTQAVQPTSETISTTPVEPTD 342
Query: 719 TPNPTEWVWHPPTEPTTTHISVTE 742
P E T I V E
Sbjct: 343 QLKPKEVDQIQEELKKTKEIEVEE 366
Score = 30.9 bits (69), Expect = 6.2
Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTEEPEQTE----------EPITTTTTSTTTTTKRPKP 1090
T E +P + + + ++++ E T EP+ T + T + P+P
Sbjct: 237 TRELEPQDDSEDDYVIPDAEIISSPTLEVTAPKEVEQPLQPEPVDEETVAETKAEEEPQP 296
Query: 1091 PTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
T T T T + P +PT V+P T+ PV P
Sbjct: 297 TQTVETKPTSAPESTVEENLPEI--NQPTQAVQPTSETISTTPVEPTDQ 343
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 35.1 bits (81), Expect = 0.35
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 1066 EPEQTEEPITT-----TTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTT 1120
P+Q +P+ T S ++ + + P+ T P TV P
Sbjct: 374 GPKQHIKPVFTQPAAAPQPSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPA 433
Query: 1121 TVKPKPTTVKPKPVIPPSTKDEFKI 1145
V P + P+ V P K+E KI
Sbjct: 434 AVPVNPPSTAPQAVRPAQFKEEKKI 458
Score = 32.1 bits (73), Expect = 3.0
Identities = 22/123 (17%), Positives = 37/123 (30%), Gaps = 13/123 (10%)
Query: 1054 TTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP----PTTTSTTTTRPKPITTIKP 1109
+ S S +P + T T + P P +T+ RP K
Sbjct: 398 ASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKK 457
Query: 1110 KPTTVKPK--PTTTVKPKPTTVKPKPVIP----PSTKDEF---KIVCYFTNWAWYRQSGG 1160
P + P+T + + I + K+ F + Y+ +A R
Sbjct: 458 IPVSKVSSLGPSTLRPIQEKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEE 517
Query: 1161 KYL 1163
K L
Sbjct: 518 KAL 520
>gnl|CDD|119356 cd02877, GH18_hevamine_XipI_class_III, This conserved domain family
includes xylanase inhibitor Xip-I, and the class III
plant chitinases such as hevamine, concanavalin B, and
PPL2, all of which have a glycosyl hydrolase family 18
(GH18) domain. Hevamine is a class III endochitinase
that hydrolyzes the linear polysaccharide chains of
chitin and peptidoglycan and is important for defense
against pathogenic bacteria and fungi. PPL2 (Parkia
platycephala lectin 2) is a class III chitinase from
Parkia platycephala seeds that hydrolyzes beta(1-4)
glycosidic bonds linking
2-acetoamido-2-deoxy-beta-D-glucopyranose units in
chitin.
Length = 280
Score = 34.5 bits (80), Expect = 0.35
Identities = 43/201 (21%), Positives = 65/201 (32%), Gaps = 66/201 (32%)
Query: 817 KKKGVKVSLAIGG--------------------WNDSLGGKYSRLVNSATARQRFIEHVV 856
+ KG KV L+IGG WN GG + + R V
Sbjct: 69 QSKGKKVLLSIGGAGGSYSLSSDADAKDFADYLWNAFGGG-------TDSGVPRPFGDAV 121
Query: 857 KFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSP 916
DG D D E+ + N DA +R L + L+AA
Sbjct: 122 -------VDGFDFDIEHGS--PENYDA--------LAKRLRSLFASDPSKKYYLTAAP-- 162
Query: 917 SKQ-VINAAYDVKALSESL-DWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFT 974
Q A A++ L D+I V Y+ + +G+ + NF
Sbjct: 163 --QCPYPDASLGDAIATGLFDFIFVQFYN-NPCCSYASGNASGF-------------NFN 206
Query: 975 MNYWMK--KGAPSRKLVMGMP 993
+ W K + K+ +G+P
Sbjct: 207 WDTWTSWAKATSNAKVFLGLP 227
Score = 33.8 bits (78), Expect = 0.56
Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 38/143 (26%)
Query: 1210 KKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN------------F 1257
+ KG KV L+IGG AG YS L + A+ F ++ N
Sbjct: 69 QSKGKKVLLSIGG----AGGSYS-LSSDADAK-DFADYLWNAFGGGTDSGVPRPFGDAVV 122
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN---PHDLLLSAAVSPSKAVI 1314
DG D D E + + L K LR+ F L+AA +
Sbjct: 123 DGFDFDIE-------------HGSPENYDALAKRLRSLFASDPSKKYYLTAAP---QCPY 166
Query: 1315 DNAYDIPVMSENL-DWISVMTYD 1336
+A ++ L D+I V Y+
Sbjct: 167 PDASLGDAIATGLFDFIFVQFYN 189
>gnl|CDD|119361 cd06544, GH18_narbonin, Narbonin is a plant 2S protein from the
globulin fraction of narbon bean (Vicia narbonensis L.)
cotyledons with unknown function. Narbonin has a
glycosyl hydrolase family 18 (GH18) domain without the
conserved catalytic residues and with no known enzymatic
activity. Narbonin amounts to up to 3% of the total seed
globulins of mature seeds and was thought to be a storage
protein but was found to degrade too slowly during
germination. This family also includes the VfNOD32
nodulin from Vicia faba.
Length = 253
Score = 34.3 bits (79), Expect = 0.37
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 1204 EKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
E V ++K + VKV ++IGG N S ++ + + I +N DG+D
Sbjct: 59 EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGID 118
Query: 1262 LDWE 1265
+D+E
Sbjct: 119 IDYE 122
Score = 33.5 bits (77), Expect = 0.75
Identities = 33/138 (23%), Positives = 62/138 (44%), Gaps = 15/138 (10%)
Query: 811 ERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
E V ++K + VKV ++IGG N + + + + Y DG+D
Sbjct: 59 EAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGID 118
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV- 927
+D+E + A PD+ E G + EL K +G++ A+++PS+ + Y
Sbjct: 119 IDYE-------HFPADPDTFVECIGQLITEL----KNNGVIKVASIAPSEDAEQSHYLAL 167
Query: 928 -KALSESLDWISVMTYDY 944
A + +D+++ Y+Y
Sbjct: 168 YNAYGDYIDYVNYQFYNY 185
Score = 32.7 bits (75), Expect = 1.1
Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 20/96 (20%)
Query: 190 LKEANPELKVYLAV----KSNFVSITSDRESRL---NFISSVLEMFDMYKFDGLDLNVKD 242
+K +P +KV +++ N + N +SS+ + Y DG+D+
Sbjct: 64 IKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTYNLDGIDI---- 119
Query: 243 PALNDEDDDDLESIANERSDFSTFIQELSSTLRRNN 278
D E + F I +L + L+ N
Sbjct: 120 ---------DYEHFPADPDTFVECIGQLITELKNNG 146
>gnl|CDD|219865 pfam08493, AflR, Aflatoxin regulatory protein. This domain is found
in the aflatoxin regulatory protein (AflR) which is
involved in the regulation of the biosynthesis of
aflatoxin in the fungal genus Aspergillus. It occurs
together with the fungal Zn(2)-Cys(6) binuclear cluster
domain (pfam00172).
Length = 275
Score = 34.5 bits (79), Expect = 0.38
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Query: 1064 TEEPEQTEEP-ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTT-VKPKPTTT 1121
E P P I TT+ TT++ P+PP + ++ +P T P T+ PK +
Sbjct: 2 LETPNTASSPTIPANTTANTTSSSHPQPPVQSGPSSIQPPVATPHTPNGTSSPSPKFSHQ 61
Query: 1122 VKPKPTTV 1129
P +
Sbjct: 62 SPPAEPEL 69
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional.
Length = 401
Score = 34.5 bits (79), Expect = 0.40
Identities = 25/92 (27%), Positives = 31/92 (33%), Gaps = 3/92 (3%)
Query: 1029 LGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVV--TTEEPEQTEEPITTTTTSTTTTTK 1086
L P G S P S P V T +T TT T +TTT+
Sbjct: 172 LAAPPLGE-GSADGSCDPALPLSAPRLGPADVFVPATPRPTPRTTASPETTPTPSTTTSP 230
Query: 1087 RPKPPTTTSTTTTRPKPITTIKPKPTTVKPKP 1118
STT P+ TT + + T P P
Sbjct: 231 PSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTP 262
Score = 34.5 bits (79), Expect = 0.44
Identities = 23/69 (33%), Positives = 26/69 (37%), Gaps = 7/69 (10%)
Query: 1067 PEQTEEPITTTTTSTTTTTKRPKPPTTTST--TTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
P P T T TT P TT T TTT P T P T P+ TT +
Sbjct: 199 PADVFVPATPRPTPRTTA-----SPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEA 253
Query: 1125 KPTTVKPKP 1133
+ T P P
Sbjct: 254 EGTPAPPTP 262
Score = 33.0 bits (75), Expect = 1.3
Identities = 20/63 (31%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 683 PTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTE 742
P P P TT PE T PSTTTS + T P TT T
Sbjct: 205 PATPRPTPRTTA---SPETTPTPSTTTSPPST----TIPAPSTTIAAPQAGTTPEAEGTP 257
Query: 743 KSP 745
P
Sbjct: 258 APP 260
Score = 31.8 bits (72), Expect = 2.6
Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 1085 TKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK-----PKPVIP 1136
T RP P TT S TT P P TT P TT+ TT P+ T P P P
Sbjct: 207 TPRPTPRTTASPETT-PTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTP 262
Score = 31.5 bits (71), Expect = 3.6
Identities = 16/52 (30%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 1088 PKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
P P T TT P+ T TT P TT P T P+ P
Sbjct: 205 PATPRPTPRTTASPE---TTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEA 253
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends to
by Lys/Arg-rich, and is followed by a membrane-spanning
region. This is followed by an acidic low-complexity
region of variable length and a well-conserved C-terminal
domain of two tandem regions matched by pfam05036
(Sporulation related repeat), found in several cell
division and sporulation proteins. The role of FtsN as a
suppressor for other cell division mutations is poorly
understood; it may involve cell wall hydrolysis [Cellular
processes, Cell division].
Length = 298
Score = 34.3 bits (78), Expect = 0.43
Identities = 24/120 (20%), Positives = 35/120 (29%), Gaps = 7/120 (5%)
Query: 1020 PLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTT 1079
L++ E G T E + E+ + + V+ T EQT T
Sbjct: 94 VLINDPEEPSNGGGVEESAQLTAEQRQLLEQMQADMRAAEKVLATAPSEQTVAVEARKQT 153
Query: 1080 STTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+ K P T + P+ T K + K PK T P T
Sbjct: 154 AE-------KKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAETQSNSKPIET 206
Score = 32.4 bits (73), Expect = 1.9
Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 3/89 (3%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP---PTTTS 1095
T + T + E + P+ T ++ + K P T+
Sbjct: 136 LATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTA 195
Query: 1096 TTTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
T + KPI T K KP K
Sbjct: 196 ETQSNSKPIETAPKADKADKTKPKPKEKA 224
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 34.5 bits (79), Expect = 0.44
Identities = 21/105 (20%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 170 LIPEDLEYDVIKGG------YKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLNFISS 223
L+P +Y+ +GG F ++A P L V L N + +D ++
Sbjct: 274 LMPLPGDYNERRGGIILDISLNEFE--QDAVPLL-VDLERNGNRIKELADF---GDYYED 327
Query: 224 VLEMFDMYKFDGLDLNVKDPALNDEDDDD----LESIANERSDFS 264
+ E+ ++ + D+ ++ DE+ +D ES+ E ++
Sbjct: 328 IFEVVEVVEKQEGDVVTEE--STDEESEDEVEIDESVIEEVAEME 370
>gnl|CDD|145047 pfam01692, Paramyxo_C, Paramyxovirus non-structural protein c. This
family consist of the C proteins (C', C, Y1, Y2) found in
Paramyxovirinae; human parainfluenza, and sendai virus.
The C proteins effect viral RNA synthesis having both a
positive and negative effect during the course of
infection. Paramyxovirus have a negative strand ssRNA
genome of 15.3kb form which six mRNAs are transcribed,
five of these are monocistronic. The P/C mRNA is
polycistronic and has two overlapping open reading frames
P and C, C encodes the nested C proteins C', C, Y1 and
Y2.
Length = 204
Score = 33.8 bits (77), Expect = 0.45
Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 1069 QTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
Q + +++ + ++ + PT T TT PK + KP+ K K
Sbjct: 16 QENKNLSSMRSDSSLNSYPTSAPTPEKTEAGSMVSSTT--PKDSAHHAKPSVNTKTKQQK 73
Query: 1129 VKPKPV 1134
+PK +
Sbjct: 74 RRPKII 79
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 34.7 bits (79), Expect = 0.46
Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 24/165 (14%)
Query: 1003 NSNDHGLNAAAPGAGVHPLLS---TITEVLGHGPGGNYESTTEEYKPTS----------- 1048
+S+ H P A P + E H + E KP
Sbjct: 503 DSDKHDEPPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPG 562
Query: 1049 --EESKPTTVSTST--------VVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
+E KP+ + T + ++PE+ ++P + T K PK P
Sbjct: 563 PAKEHKPSKIPTLSKKPEFPKDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPK 622
Query: 1099 TRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEF 1143
+ +P + PK +P++ +P+ + P P S K F
Sbjct: 623 SPKRPESPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPF 667
Score = 32.7 bits (74), Expect = 1.7
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 23/86 (26%)
Query: 661 RTKCKQTSATT-----TSEQVPKP-----TKKPTKPTKKPTTTTEYNPPEATTKPS---- 706
RT +T A T +E+ + T +P + K+P + +E+ PS
Sbjct: 757 RTFFHETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHPSLPKK 816
Query: 707 ---------TTTSTTTDSGAWTPNPT 723
+TT +D+G + +
Sbjct: 817 RHRLDGLALSTTDLESDAGRIAKDAS 842
Score = 32.4 bits (73), Expect = 2.4
Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 7/110 (6%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
E ++Y + +SK T + + E + P T T TT PK P
Sbjct: 673 EKFYDDYLDAAAKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFP 732
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPS---TKDEFK 1144
+P P + T P P +EFK
Sbjct: 733 FEPIGDPDAEQPDDIEFFTPPEE----ERTFFHETPADTPLPDILAEEFK 778
Score = 31.6 bits (71), Expect = 4.6
Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 2/78 (2%)
Query: 662 TKCKQTSATTTSEQVPKPTKKPTKPTK--KPTTTTEYNPPEATTKPSTTTSTTTDSGAWT 719
K K+T T ++ + K T P P TT PP+ D A
Sbjct: 684 AKSKETKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQ 743
Query: 720 PNPTEWVWHPPTEPTTTH 737
P+ E+ P E T H
Sbjct: 744 PDDIEFFTPPEEERTFFH 761
Score = 31.2 bits (70), Expect = 5.7
Identities = 20/111 (18%), Positives = 30/111 (27%), Gaps = 2/111 (1%)
Query: 1023 STITEVLGHGPGGNYESTTE--EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTS 1080
S + E L PG + + P EE + ++ E P T
Sbjct: 701 SILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIEFFTPPEEERTFF 760
Query: 1081 TTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKP 1131
T P P T +P +P + + KP P
Sbjct: 761 HETPADTPLPDILAEEFKEEDIHAETGEPDEAMKRPDSPSEHEDKPPGDHP 811
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 34.7 bits (79), Expect = 0.50
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 1066 EPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITT 1106
P P TT+++TTT TTT+TTT P TT
Sbjct: 669 APGSVTVPAAANTTTSSTTT------TTTTTTTAAPTTTTT 703
Score = 34.0 bits (77), Expect = 0.74
Identities = 15/58 (25%), Positives = 20/58 (34%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTT 1121
T +TTTT+TTTTT P TT + P+ + T
Sbjct: 674 TVPAAANTTTSSTTTTTTTTTTAAPTTTTTKAANAPFTYPLCNLIMSAACSAGGAGCT 731
Score = 31.3 bits (70), Expect = 5.1
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 1051 SKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTI 1107
S S+S T+ T TT++ STTTT+ +TS+ T + ++
Sbjct: 104 SASGNSSSSANSTSNSNSTTSNNSTTSSNSTTTTSNSTSSSNSTSSGLTSGASVVSL 160
Score = 30.5 bits (68), Expect = 7.9
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 1037 YESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
Y++ T T + TT S++T TT TTT TTTTTK P T
Sbjct: 664 YQNCTAPGSVTVPAAANTTTSSTTTTTT---------TTTTAAPTTTTTKAANAPFT 711
Score = 30.5 bits (68), Expect = 8.8
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 1042 EEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRP 1101
E + S + T+ S ST +T T + STTTT +TTST +T
Sbjct: 274 EAFANGSASANSTSNSNSTSNST-----------TNSNSTTTTN------STTSTNSTSS 316
Query: 1102 KPITTI 1107
+TI
Sbjct: 317 SNSSTI 322
>gnl|CDD|219668 pfam07964, Red1, Rec10 / Red1. Rec10 / Red1 is involved in meiotic
recombination and chromosome segregation during
homologous chromosome formation. This protein localises
to the synaptonemal complex in S. cerevisiae and the
analogous structures (linear elements) in S. pombe. This
family is currently only found in fungi.
Length = 706
Score = 34.5 bits (79), Expect = 0.55
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTV---STSTVVTTEEPEQTEE---PITTTTTSTTTTTKR 1087
G + ++ + +KP +SK S + +T S+ K
Sbjct: 467 GKSKQTKLKNFKPVPNKSKKQLANNNSQNIKSKKVVKAKTNNKANLQDVGECSSPPNNKE 526
Query: 1088 P---KPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPP 1137
+ T++S + I P K + TT PT K
Sbjct: 527 KNDKQTSTSSSVLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSKNNAYTLV 579
Score = 30.2 bits (68), Expect = 9.3
Identities = 25/116 (21%), Positives = 35/116 (30%), Gaps = 17/116 (14%)
Query: 652 KMKTCDWPYRTKCKQTSATTTSEQV------PKPTKKPTKPTKKP--TTTTEYNPPEATT 703
+ C P K K T+TS V + P KK TT P +
Sbjct: 514 DVGECSSPPNNKEKNDKQTSTSSSVLKSDRSSIEVRNPNANVKKLEDTTYNAKFPTVSKN 573
Query: 704 KPSTTTSTTTDSGAWTP-NPTEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYFTN 758
T +T A + T V +TT ++ K P FT+
Sbjct: 574 NAYTLVDISTSEDAVNSADDTRSVNITDISESTTISGLSSKFP--------SSFTS 621
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 34.2 bits (78), Expect = 0.60
Identities = 24/122 (19%), Positives = 41/122 (33%), Gaps = 10/122 (8%)
Query: 1022 LSTITEVLGHGPGGNYESTTEEYKPTSEESKP-TTVSTSTVVTTEEPEQTEEPITTTTTS 1080
+ T L G Y+ T+ + P S ST TT +T ++
Sbjct: 1 MDTRAAGLSAARAGLYQYTSGAPVNALSGNSPKANNSASTGQTTSR---------STNSA 51
Query: 1081 TTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK 1140
+ +KR + T++ + K T P V P P K +P ++
Sbjct: 52 RRSGSKRDRETATSTDSGRTKSHEGAATTKQATTTPTTNVEVAPPPKKKKVTYALPNQSR 111
Query: 1141 DE 1142
+E
Sbjct: 112 EE 113
>gnl|CDD|236733 PRK10672, PRK10672, rare lipoprotein A; Provisional.
Length = 361
Score = 33.9 bits (78), Expect = 0.62
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 6/86 (6%)
Query: 1056 VSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPT--TTSTTTTRPKPITTIKPKPTT 1113
+ T +V P+ P++ +T + T P + + TT P + +P PT
Sbjct: 204 MGTPSVQPAPAPQGDVLPVSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPTA 263
Query: 1114 VKPKPTTTVKPKPTTVKPKPVIPPST 1139
P T P P+ S+
Sbjct: 264 PSSAPATA----PAAAAPQAAATSSS 285
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 33.2 bits (76), Expect = 0.66
Identities = 14/44 (31%), Positives = 17/44 (38%)
Query: 1052 KPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTS 1095
K TT S V PE E P T+ TT ++ K T
Sbjct: 25 KSTTESVDKVNDDIFPEDVEIPSKKTSKKKKTTPRKKKTTKKTK 68
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 33.9 bits (78), Expect = 0.68
Identities = 15/97 (15%), Positives = 25/97 (25%), Gaps = 2/97 (2%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
+S + +S + T E E +T K +
Sbjct: 18 KSKLQPISYIYSNVL--VLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPV 1134
+ K + + P + K K KPKP
Sbjct: 76 KKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPN 112
Score = 33.5 bits (77), Expect = 0.84
Identities = 15/88 (17%), Positives = 22/88 (25%), Gaps = 4/88 (4%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
+ E SEE +++ E+ + + K PK
Sbjct: 29 SNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Query: 1094 TSTTTTRPKPITTIKPKPTTVKPKPTTT 1121
T PK K PKP
Sbjct: 89 TKLGFKTPKK----SKKTKKKPPKPKPN 112
>gnl|CDD|225689 COG3147, DedD, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 226
Score = 33.3 bits (76), Expect = 0.73
Identities = 15/83 (18%), Positives = 20/83 (24%), Gaps = 2/83 (2%)
Query: 1061 VVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST--TTTRPKPITTIKPKPTTVKPKP 1118
V P Q E + P + + P + P VKP
Sbjct: 61 VQVVALPTQPPEGVAQEIQDAGDAAAASVDPQPVAQPPVESTPAGVPVAAQTPKPVKPPK 120
Query: 1119 TTTVKPKPTTVKPKPVIPPSTKD 1141
P PKP P +
Sbjct: 121 QPPAGAVPAKPTPKPEPKPVAEP 143
>gnl|CDD|165527 PHA03269, PHA03269, envelope glycoprotein C; Provisional.
Length = 566
Score = 33.9 bits (77), Expect = 0.82
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 15/86 (17%)
Query: 1068 EQTEEPITTTTTSTTTTTKRPKP-PTTTSTTTTRPKP------ITTIKPKPTTVKPKPTT 1120
I T+ T++P P P + P P + KP P P
Sbjct: 20 ANLNTNIPIPELHTSAATQKPDPAPAPHQAASRAPDPAVAPTSAASRKPDLA-QAPTPAA 78
Query: 1121 TVKPKP-------TTVKPKPVIPPST 1139
+ K P + P P + P
Sbjct: 79 SEKFDPAPAPHQAASRAPDPAVAPQL 104
Score = 32.8 bits (74), Expect = 1.6
Identities = 15/113 (13%), Positives = 31/113 (27%), Gaps = 19/113 (16%)
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTR 1100
T + T + + T+ ++ + ++ P P ++ +R
Sbjct: 11 TIACINLIIANLNTNIPIPELHTSAATQKPDPAPAPHQAASR----APDPAVAPTSAASR 66
Query: 1101 -------PKPITTIKPKPTTVKPKPTTTVKPKPTTV-------KPKPVIPPST 1139
P P + K P P + P P KP ++
Sbjct: 67 KPDLAQAPTPAASEKFDP-APAPHQAASRAPDPAVAPQLAAAPKPDAAEAFTS 118
>gnl|CDD|212516 cd09990, Agmatinase-like, Agmatinase-like family. Agmatinase
subfamily currently includes metalloenzymes such as
agmatinase, guanidinobutyrase, guanidopropionase,
formimidoylglutamase and proclavaminate
amidinohydrolase. Agmatinase (agmatine ureohydrolase;
SpeB; EC=3.5.3.11) is the key enzyme in the synthesis of
polyamine putrescine; it catalyzes hydrolysis of
agmatine to yield putrescine and urea. This enzyme has
been found in bacteria, archaea and eukaryotes,
requiring divalent Mn and sometimes Zn, Co or Ca for
activity. In mammals, the highest level of agmatinase
mRNA was found in liver and kidney. However, catabolism
of agmatine via agmatinase apparently is a not major
path; it is mostly catabolized via diamine oxidase.
Agmatinase has been shown to be down-regulated in tumor
renal cells. Guanidinobutyrase (Gbh, EC=3.5.3.7)
catalyzes hydrolysis of 4-guanidinobutanoate to yield
4-aminobutanoate and urea in arginine degradation
pathway. Activity has been shown for purified enzyme
from Arthrobacter sp. KUJ 8602. Additionally,
guanidinobutyrase is able to hydrolyze D-arginine,
3-guanidinopropionate, 5-guanidinovaleriate and
L-arginine with much less affinity, having divalent Zn
ions for catalysis. Proclavaminate amidinohydrolase
(Pah, EC 3.5.3.22) hydrolyzes amidinoproclavaminate to
yield proclavaminate and urea in clavulanic acid
biosynthesis. Activity has been shown for purified
enzyme from Streptomyces clavuligerus. Clavulanic acid
is the effective inhibitor of beta-lactamases. This acid
is used in combination with the penicillin amoxicillin
to prevent antibiotic's beta-lactam rings from
hydrolysis, thus keeping the antibiotics biologically
active.
Length = 275
Score = 32.9 bits (76), Expect = 0.94
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 331 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIG 365
V + F+ I AV + GA P I++G
Sbjct: 55 VPVDPGDIEKTFDRIREAVAEIAEAGAIP--IVLG 87
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This family
includes gbp a protein from Soybean that binds to GAGA
element dinucleotide repeat DNA. It seems likely that the
this domain mediates DNA binding. This putative domain
contains several conserved cysteines and a histidine
suggesting this may be a zinc-binding DNA interaction
domain.
Length = 301
Score = 33.3 bits (76), Expect = 0.95
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
T E E P +T K+PK + PK PKP K K
Sbjct: 126 TREMHHLEVPPISTAPPEAKEVKKPK----KGQSPKVPK-----APKPKKPKKKG----- 171
Query: 1124 PKPTTVKPKPVIPPSTKDEFK 1144
P I P +K ++K
Sbjct: 172 SVSNRSVKMPGIDPRSKPDWK 192
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase;
Provisional.
Length = 418
Score = 33.5 bits (77), Expect = 0.98
Identities = 16/79 (20%), Positives = 22/79 (27%), Gaps = 1/79 (1%)
Query: 1037 YESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST 1096
E T P + + T E+P+ S T KPP
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKT-TPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPA 174
Query: 1097 TTTRPKPITTIKPKPTTVK 1115
P P+ P+ T V
Sbjct: 175 AKPPPTPVARADPRETRVP 193
Score = 33.1 bits (76), Expect = 1.3
Identities = 15/64 (23%), Positives = 15/64 (23%), Gaps = 2/64 (3%)
Query: 1088 PKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVC 1147
PP K T KP P P KPT P PP K
Sbjct: 122 GAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPT--PPAAAKPPEPAPAAKPPP 179
Query: 1148 YFTN 1151
Sbjct: 180 TPVA 183
Score = 32.3 bits (74), Expect = 2.0
Identities = 15/77 (19%), Positives = 20/77 (25%), Gaps = 1/77 (1%)
Query: 1055 TVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTV 1114
+ T P TT P P ++ T P +P P
Sbjct: 117 EIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAK 176
Query: 1115 KP-KPTTTVKPKPTTVK 1130
P P P+ T V
Sbjct: 177 PPPTPVARADPRETRVP 193
Score = 32.0 bits (73), Expect = 2.4
Identities = 14/73 (19%), Positives = 18/73 (24%)
Query: 1059 STVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKP 1118
S + T P + TT ++PK T KP KP P
Sbjct: 116 SEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAA 175
Query: 1119 TTTVKPKPTTVKP 1131
P
Sbjct: 176 KPPPTPVARADPR 188
Score = 31.6 bits (72), Expect = 3.4
Identities = 14/61 (22%), Positives = 15/61 (24%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
I T TT +PK P KP P KP KP
Sbjct: 118 IDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKP 177
Query: 1134 V 1134
Sbjct: 178 P 178
Score = 30.8 bits (70), Expect = 5.5
Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 1/71 (1%)
Query: 1073 PITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVK-PKPTTTVKPKPTTVKP 1131
P++ T P T P+ P P KPT KP P
Sbjct: 114 PLSEIDTGGAPPAAAPAAAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAP 173
Query: 1132 KPVIPPSTKDE 1142
PP+
Sbjct: 174 AAKPPPTPVAR 184
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and is
typically between 384 and 430 amino acids in length.
Length = 414
Score = 32.9 bits (75), Expect = 1.2
Identities = 27/106 (25%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTV--VTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST 1096
T+ KP E S T +S T +P+ E+ TT K P+ S
Sbjct: 234 EKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAPPIDTTEEEL--KSPEASPKESE 291
Query: 1097 TTTRPKPI-TTIKPKPTTVKPKPTTTVKPKPT---TVKPKPVIPPS 1138
+ K + + P P PKP + P + +PKP PP
Sbjct: 292 EASARKRSPSLLSPSPKAESPKPLASPGKSPRDPLSPRPKPQSPPV 337
Score = 32.9 bits (75), Expect = 1.4
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 8/96 (8%)
Query: 1046 PTSEESKPTTVSTST-VVTTEEPEQT--EEPITTTTTSTTTTTKRPKPPTTTSTTTTRPK 1102
P SK + S + ++ + E+T E+P T++ T + PKP T PK
Sbjct: 211 PPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKP-----RETLDPK 265
Query: 1103 PITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPS 1138
P TT + + PK + PS
Sbjct: 266 SPEKAPPIDTTEEELKSPEASPKESEEASARKRSPS 301
Score = 32.9 bits (75), Expect = 1.5
Identities = 19/113 (16%), Positives = 36/113 (31%), Gaps = 6/113 (5%)
Query: 1033 PGGNYESTTE----EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRP 1088
PG + +S ++ + + + K ++ + E++ P T + K P
Sbjct: 212 PGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSAPKPRETLDPKSPEKAP 271
Query: 1089 KPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKD 1141
TT + + K P+ P P PKP+ P
Sbjct: 272 PIDTTEEELKSPEASPKESEEASAR-KRSPSLLS-PSPKAESPKPLASPGKSP 322
Score = 31.4 bits (71), Expect = 4.3
Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 7/101 (6%)
Query: 1047 TSEESKPTTVSTSTVVTTEEPEQTEEPITTT-TTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
+ +E P + + + ++ I ++ + TK KP TS+ T
Sbjct: 197 SFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSSA- 255
Query: 1106 TIKPKPTTV-KPKPTTTVKPKPTTV-KPKPVIPPSTKDEFK 1144
PKP PK P TT + K + E
Sbjct: 256 ---PKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEA 293
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of AF4
(Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain. Lilliputian
represents a novel pair-rule gene that acts in
cytoskeleton regulation, segmentation and morphogenesis
in Drosophila.
Length = 1154
Score = 33.0 bits (75), Expect = 1.4
Identities = 31/123 (25%), Positives = 45/123 (36%), Gaps = 19/123 (15%)
Query: 1035 GNYESTTEEYKPTSEESKPTTVST-------------STVVTTEEPEQTEEPITTTTTST 1081
G +S+ +Y P S+E P + S S + P Q+E P T
Sbjct: 479 GKVKSSGSQYHPESKEPPPKSSSKEKRRPRTAQKGPESGRGKQKSPAQSEAPPQRRTVGK 538
Query: 1082 TTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTV-----KPKPTTTVKPKPTTVK-PKPVI 1135
K K T RP+ P ++V +PK T KP+ K PK +
Sbjct: 539 KQPKKPEKASAGDERTGLRPESEPGTLPYGSSVQTPPDRPKAATKGSRKPSPRKEPKSSV 598
Query: 1136 PPS 1138
PP+
Sbjct: 599 PPA 601
>gnl|CDD|221562 pfam12406, DUF3664, Surface protein. This family of proteins is
found in eukaryotes. Proteins in this family are
typically between 131 and 312 amino acids in length.
Length = 100
Score = 30.8 bits (69), Expect = 1.4
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
Query: 1065 EEPEQTEEPITTTTTSTTTTTK---RPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTT 1121
++ EQ++EP T+ P+ + T P+P+T+ +PK + +PT T
Sbjct: 25 DQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTET 84
Query: 1122 VKPKPTTVKPKPVIPP 1137
K +PV P
Sbjct: 85 QDSKQEPT-QQPVDEP 99
Score = 28.5 bits (63), Expect = 8.0
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 1048 SEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
EE +P TV+ V EP +EEP + T T T+ K T
Sbjct: 51 PEELEPETVT----VEVPEPVTSEEPKESDQTEEPTETQDSKQEPT 92
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 32.7 bits (75), Expect = 1.5
Identities = 31/126 (24%), Positives = 36/126 (28%), Gaps = 7/126 (5%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
S +S P ST+T T P TT T S T P P
Sbjct: 156 QNSGQSVPLDTSTTTDPATT-PAPAAPVDTTPTNSQTPAVATAPAPAVDPQQNAVVAPSQ 214
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK--DEFKIVCYFTNWAWY--RQSGGK 1161
T P T P P ST D +V FT W + GK
Sbjct: 215 ANVDTAATPAPAAPAT--PDGAAPLPTDQAGVSTPAADPNALVMNFTADCWLEVTDATGK 272
Query: 1162 YLPSDI 1167
L S +
Sbjct: 273 KLFSGM 278
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal. Mediator is a
large complex of up to 33 proteins that is conserved from
plants to fungi to humans - the number and representation
of individual subunits varying with species. It is
arranged into four different sections, a core, a head, a
tail and a kinase-activity part, and the number of
subunits within each of these is what varies with
species. Overall, Mediator regulates the transcriptional
activity of RNA polymerase II but it would appear that
each of the four different sections has a slightly
different function. Mediator subunit Hrs1/Med3 is a
physical target for Cyc8-Tup1, a yeast transcriptional
co-repressor.
Length = 381
Score = 32.7 bits (74), Expect = 1.5
Identities = 19/82 (23%), Positives = 29/82 (35%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
S T+ + + +T +T + P TTT + TT T T+ TT
Sbjct: 130 SITKTSNGSDAATTSSTANTPAAAKVLKANAASAPNTTTGVGSAATTAAISATTATTPTT 189
Query: 1099 TRPKPITTIKPKPTTVKPKPTT 1120
T+ KP + K T
Sbjct: 190 TQKKPRKPRQTKKTGPAAAAKA 211
Score = 30.4 bits (68), Expect = 7.0
Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 14/82 (17%)
Query: 1072 EPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK-------- 1123
+ +++ T T TTS+T P + P TT V
Sbjct: 121 QLGNAGASASITKTSNGSDAATTSSTANTPA-AAKVLKANAASAPNTTTGVGSAATTAAI 179
Query: 1124 -----PKPTTVKPKPVIPPSTK 1140
PTT + KP P TK
Sbjct: 180 SATTATTPTTTQKKPRKPRQTK 201
>gnl|CDD|119360 cd06543, GH18_PF-ChiA-like, PF-ChiA is an uncharacterized chitinase
found in the hyperthermophilic archaeon Pyrococcus
furiosus with a glycosyl hydrolase family 18 (GH18)
catalytic domain as well as a cellulose-binding domain.
Members of this domain family are found not only in
archaea but also in eukaryotes and prokaryotes. PF-ChiA
exhibits hydrolytic activity toward both colloidal and
crystalline (beta/alpha) chitins at high temperature.
Length = 294
Score = 32.3 bits (74), Expect = 1.8
Identities = 35/216 (16%), Positives = 63/216 (29%), Gaps = 50/216 (23%)
Query: 1148 YFTNWAWYRQSGGKY-LPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWA-----DLDNK 1201
Y Y + + F V KP W D
Sbjct: 6 YVDVTLNPPPDLTTYAAATGVK-----AFTLAFIVASGGC---KP--AWGGSYPLDQGGW 55
Query: 1202 FYEKVTALKKKGVKVTLAIGGWNDS--AGNKYSRLVNSQQARSKFIAHVVNFILEHNFDG 1259
+ AL+ G V ++ GG + + A + ++ Q + + + +
Sbjct: 56 IKSDIAALRAAGGDVIVSFGGASGTPLATSC----TSADQLAAAYQKVIDAY----GLTH 107
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADL----IKELRAAFNPHDLLLSAAVSPS----- 1310
LD D E G A D + L+ + + + V P+
Sbjct: 108 LDFDIE-----------GGALTDTAAIDRRAQALALLQKEYPDLKISFTLPVLPTGLTPD 156
Query: 1311 -KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKT 1345
V++ A V +LD +++MT DY +
Sbjct: 157 GLNVLEAAAANGV---DLDTVNIMTMDYGSSAGSQD 189
>gnl|CDD|115650 pfam07010, Endomucin, Endomucin. This family consists of several
mammalian endomucin proteins. Endomucin is an early
endothelial-specific antigen that is also expressed on
putative hematopoietic progenitor cells.
Length = 259
Score = 32.0 bits (72), Expect = 1.9
Identities = 24/125 (19%), Positives = 37/125 (29%), Gaps = 5/125 (4%)
Query: 1011 AAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQT 1070
A+ L + G P G S + S + TT TT +
Sbjct: 39 ASITTPNTVSLKNVNKPTTGTPPKGTTTSELLKTSLMSTATSLTTPKHELKTTTTGVRKN 98
Query: 1071 EEPITTTTTSTTTT-----TKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPK 1125
E + T + T T + T + ++ R I+ PK T T
Sbjct: 99 ESSTSKVTVTNVTLSNAVSTLQSSQNKTENQSSIRTTEISPTSVLQPDASPKKTGTTSAS 158
Query: 1126 PTTVK 1130
TT +
Sbjct: 159 LTTAE 163
Score = 30.8 bits (69), Expect = 4.3
Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 1036 NYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTT------TSTTTTTKRPK 1089
N +E K + S TT +T +TT + TT T+T+ K
Sbjct: 15 NSLCNSEGVKEAANNSLVTTSTTKASITTPNTVSLKNVNKPTTGTPPKGTTTSELLKTSL 74
Query: 1090 PPTTTSTTTTRPKPITTIKP--KPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKI 1145
T TS TT + + TT K + K T T V T+++ I
Sbjct: 75 MSTATSLTTPKHELKTTTTGVRKNESSTSKVTVTNVTLSNAVSTLQSSQNKTENQSSI 132
>gnl|CDD|215044 PLN00063, PLN00063, photosystem II core complex proteins psbY;
Provisional.
Length = 194
Score = 31.8 bits (72), Expect = 1.9
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 1075 TTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKP---TTVKPKPTTTV 1122
T +T + + S T T+P + +++ KP T K T V
Sbjct: 3 TMAALATKCLSINARKNPNPSKTKTKPIILLSMQNKPKGLTISKSADNTNV 53
>gnl|CDD|218902 pfam06121, DUF959, Domain of Unknown Function (DUF959). This
N-terminal domain is not expressed in the 'Short' isoform
of Collagen A.
Length = 202
Score = 31.7 bits (71), Expect = 1.9
Identities = 25/98 (25%), Positives = 34/98 (34%), Gaps = 2/98 (2%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPI 1104
K + KP T + T + P Q P+ +T ++TT RP T STT +
Sbjct: 20 KKPTWLWKPYTELSPTASSAAVP-QASTPVQSTESTTTHVVPRPGE-TEESTTPASSEEP 77
Query: 1105 TTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
I K T P T V P +E
Sbjct: 78 KEIVEKGKQNVVPGTVATTPTVTPVAMDVASSPDLSEE 115
>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional.
Length = 475
Score = 32.6 bits (74), Expect = 1.9
Identities = 12/61 (19%), Positives = 18/61 (29%)
Query: 1085 TKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
+ P + + P P T P P KP KP+ P +K
Sbjct: 15 EQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPRRERKPKPASLWK 74
Query: 1145 I 1145
+
Sbjct: 75 L 75
>gnl|CDD|220096 pfam09052, SipA, Salmonella invasion protein A. Salmonella invasion
protein A is an actin-binding protein that contributes to
host cytoskeletal rearrangements by stimulating actin
polymerisation and counteracting F-actin destabilising
proteins. Members of this family possess an all-helical
fold consisting of eight alpha-helices arranged so that
six long, amphipathic helices form a compact fold that
surrounds a final, predominantly hydrophobic helix in the
middle of the molecule.
Length = 674
Score = 32.3 bits (73), Expect = 2.1
Identities = 27/128 (21%), Positives = 41/128 (32%), Gaps = 11/128 (8%)
Query: 1003 NSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYEST--TEEYKPTSEESKPTTVSTST 1060
N N A+P AG H L+ +T VL H G ++ K + T ++
Sbjct: 358 NGNSLLSPPASPAAGQHALVQKVTSVLPHSISGTVDTFANNSAEKVFN----HTPDNSDG 413
Query: 1061 VVTTEEPEQTEEPITTTTTSTTTTTKRPKPP--TTTSTTTTRPKPITTIKPKPTTVK--- 1115
V ++ S + R P S+ T P+ T VK
Sbjct: 414 AVRLAGIGSDGLTTSSQERSANNSLSRGGRPLNIQNSSVTDPLHPVLTAADGAEGVKSST 473
Query: 1116 PKPTTTVK 1123
+ T K
Sbjct: 474 DNSSDTTK 481
>gnl|CDD|212088 cd11519, SLC5sbd_SMCT1, Na(+)/monocarboxylate cotransporter SMCT1 and
related proteins; solute-binding domain. SMCT1 is a
high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. Its expression is under the
control of the C/EBP transcription factor. Its
tumor-suppressive role is related to uptake of butyrate,
propionate, and pyruvate, these latter are inhibitors of
histone deacetylases. SMCT1 is expressed in the colon,
small intestine, kidney, thyroid gland, retina, and
brain. SMCT1 may contribute to the intestinal/colonic and
oral absorption of monocarboxylate drugs. SMCT1 also
mediates iodide transport from thyrocyte into the colloid
lumen in thyroid gland and through transporting l-lactate
and ketone bodies helps maintain the energy status and
the function of neurons. In the kidney its expression is
limited to the S3 segment of the proximal convoluted
tubule (in contrast to the low-affinity monocarboxylate
transporter SMCT2, belonging to a different family, which
is expressed along the entire length of the tubule). In
the retina, SMCT1 and SMCT2 may play a differential role
in monocarboxylate transport in a cell type-specific
manner, SMCT1 is expressed predominantly in retinal
neurons and in retinal pigmented epithelial (RPE) cells.
This subgroup belongs to the solute carrier 5 (SLC5)
transporter family.
Length = 541
Score = 32.4 bits (74), Expect = 2.3
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 14/60 (23%)
Query: 1044 YKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP 1103
Y P E + P +ST E T T S TTTT + P T T P+P
Sbjct: 457 YPPLPERTLPLPLST------------EGCNFTNTESNTTTT--TEMPFTIFPTQPSPRP 502
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins in
this family for which functions are known are components
of a multiprotein complex used for targeting nucleotide
excision repair to specific parts of the genome. In
humans, Rad23 complexes with the XPC protein. This family
is based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 378
Score = 32.2 bits (73), Expect = 2.4
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 1074 ITTTTTSTTTTTKRPKPPT--TTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKP 1131
++ T T PT T T + P + + P + + + + + T
Sbjct: 74 VSKPKTGTGKVAPPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPE 133
Query: 1132 KPVIPPSTKDE 1142
PST
Sbjct: 134 ----SPSTSVP 140
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional.
Length = 991
Score = 32.3 bits (73), Expect = 2.5
Identities = 30/129 (23%), Positives = 46/129 (35%), Gaps = 20/129 (15%)
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTEEPEQTE-EPITTTTTS---------TTTTTKRPKP 1090
TE+ S+E T ++ + +P+T+ TTS T P P
Sbjct: 543 TEDLDIESDEPASTEPVHDQLLPAPGLGPLQIQPLTSPTTSQLASSAPSYAQTPWPVPHP 602
Query: 1091 PTTTSTTTTRPKPITTIKPK--PTTVKPKPTTTVKPKPTT----VKPKPVIPPSTKDEFK 1144
T TT+ T P+ P ++P P ++ +P T V P P PP +
Sbjct: 603 SQTPEPPTTQSHIPETSAPRQWPMPLRPIPMRPLRMQPITFNVLVFPTPHQPPQVEITP- 661
Query: 1145 IVCYFTNWA 1153
Y W
Sbjct: 662 ---YKPTWT 667
Score = 30.4 bits (68), Expect = 8.9
Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 6/72 (8%)
Query: 1067 PEQTEEPITTTTTST-TTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPK 1125
P Q + T T T P P+ T T P I+ P T++P P +
Sbjct: 651 PHQPPQVEITPYKPTWTQIGHIPYQPSPTGANTMLP-----IQWAPGTMQPPPRAPTPMR 705
Query: 1126 PTTVKPKPVIPP 1137
P P P
Sbjct: 706 PPAAPPGRAQRP 717
>gnl|CDD|212074 cd11505, SLC5sbd_SMCT, Na(+)/monocarboxylate cotransporters SMCT1 and
2 and related proteins; solute-binding domain. SMCT1 is
a high-affinity transporter of various monocarboxylates
including lactate and pyruvate, short-chain fatty acids,
ketone bodies, nicotinate and its structural analogs,
pyroglutamate, benzoate and its derivatives, and iodide.
Human SMCT1 (hSMCT1, also called AIT) is encoded by the
tumor suppressor gene SLC5A8. SMCT1 is expressed in the
colon, small intestine, kidney, thyroid gland, retina,
and brain. SMCT1 may contribute to the intestinal/colonic
and oral absorption of monocarboxylate drugs. It also
mediates iodide transport from thyrocyte into the colloid
lumen in thyroid gland and, through transporting
L-lactate and ketone bodies, helps maintain the energy
status and the function of neurons. SMCT2 is a
low-affinity transporter for short-chain fatty acids,
lactate, pyruvate, and nicotinate. hSMCT2 is encoded by
the SLC5A12 gene. SMCT2 is expressed in the kidney, small
intestine, skeletal muscle, and retina. In the kidney,
SMCT2 may initiate lactate absorption in the early parts
of the tubule, SMCT1 in the latter parts of the tubule.
In the retina, SMCT1 and SMCT2 may play a differential
role in monocarboxylate transport in a cell type-specific
manner. This subgroup belongs to the solute carrier 5
(SLC5) transporter family.
Length = 536
Score = 32.0 bits (73), Expect = 2.7
Identities = 30/115 (26%), Positives = 40/115 (34%), Gaps = 30/115 (26%)
Query: 989 VMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTS 1048
++G+ G F ANS + LL+ L G G + Y P
Sbjct: 418 LLGLFSLGILFPFANSK----------GALSGLLTGFAISLWVGIG------AQIYPPPP 461
Query: 1049 EESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKP 1103
E + P +ST E T T S TTTT + PTT T +P
Sbjct: 462 ERTLPLPLST------------EGCNFTNTESNTTTT--TEMPTTIFPTQPSSRP 502
>gnl|CDD|114205 pfam05467, Herpes_U47, Herpesvirus glycoprotein U47.
Length = 627
Score = 32.1 bits (72), Expect = 2.8
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 26/130 (20%)
Query: 1036 NYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTS 1095
N++S ++ S ++++ + +T P P+T T T T + P T T
Sbjct: 232 NFDSILTTTPSSTPSSTSASITSPHIPSTNIPTPEPPPVTKNFTELHTDTIKVTPNTPTI 291
Query: 1096 TTTTR------------PKPI--------------TTIKPKPTTVKPKPTTTVKPKPTTV 1129
T T P+P+ TIK + T P PKPT
Sbjct: 292 TAQTTESIKKIVKRSDFPRPMYTPTDIPTLTIRLNATIKTEQNTENPTENPKSPPKPTNF 351
Query: 1130 KPKPVIPPST 1139
+ + P T
Sbjct: 352 ENTTIRIPET 361
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.9 bits (73), Expect = 3.1
Identities = 18/158 (11%), Positives = 39/158 (24%), Gaps = 8/158 (5%)
Query: 985 SRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEY 1044
+ V+G + +D N + +G + + +
Sbjct: 1190 KKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNN 1249
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPI 1104
S E S+ + +P+ + ++ S +KRP + + + P
Sbjct: 1250 SSKSSEDNDEF-SSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSP--- 1305
Query: 1105 TTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
K K + K K
Sbjct: 1306 ----TKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKT 1339
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 30.7 bits (69), Expect = 3.2
Identities = 16/98 (16%), Positives = 27/98 (27%), Gaps = 4/98 (4%)
Query: 1043 EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP----TTTSTTT 1098
E++P E ++ + V + + +P + +
Sbjct: 53 EHEPNQEVTEVEVIIEKEPVPAVAVAPVPVAVVAPVVAPKPKKSQPVMSQEKTASPQKSV 112
Query: 1099 TRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIP 1136
P P K K V+P P V K PV
Sbjct: 113 PAPSPKEKKKKKVAKVEPAPAKAVAVPVLASKSAPVPA 150
>gnl|CDD|201431 pfam00763, THF_DHG_CYH, Tetrahydrofolate
dehydrogenase/cyclohydrolase, catalytic domain.
Length = 117
Score = 29.8 bits (68), Expect = 3.3
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 1204 EKVTALKKKGVKVTLAI---GGWNDSAGNKYSRLVNSQQARSKFI 1245
E+V LK+KG+ LA+ G +D A Y V S++ ++ +
Sbjct: 18 EEVAKLKEKGITPKLAVILVG--DDPASQVY---VRSKRKAAEEL 57
>gnl|CDD|183673 PRK12676, PRK12676, bifunctional inositol-1
monophosphatase/fructose-1,6-bisphosphatase; Reviewed.
Length = 263
Score = 31.0 bits (71), Expect = 3.8
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 363 IIGIPFFGKSYRLFNRSE--YGLGATVKGPGTEGKYTQMPGYLAFFE 407
I GIPF+ S +F + YG V T Y +PG A+
Sbjct: 96 INGIPFYAISIAVFKGGKPVYGY---VYNLATGDFYEAIPGKGAYLN 139
>gnl|CDD|223061 PHA03369, PHA03369, capsid maturational protease; Provisional.
Length = 663
Score = 31.5 bits (71), Expect = 4.1
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 2/90 (2%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
+ + ++ + T T + Q + I + + + T PP
Sbjct: 355 APSRVLAAAAKVAVIAAPQTHTGPADRQRPQRPDGIPYSVPARSPMT--AYPPVPQFCGD 412
Query: 1099 TRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
+ T+ P+P V P+PT
Sbjct: 413 PGLVSPYNPQSPGTSYGPEPVGPVPPQPTN 442
>gnl|CDD|227326 COG4993, Gcd, Glucose dehydrogenase [Carbohydrate transport and
metabolism].
Length = 773
Score = 31.3 bits (71), Expect = 4.4
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 2/42 (4%)
Query: 957 PLYEHPDDD-FFYFNANF-TMNYWMKKGAPSRKLVMGMPMYG 996
Y P Y N N+ P R++ G P Y
Sbjct: 555 GRYTPPSTQGSLYVPGNHGMFNWGGVSVDPVRQVTFGNPYYL 596
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 31.4 bits (71), Expect = 4.7
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 1089 KPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKD 1141
KP ++ + + KP P KP ++ +PK KP PPS+ D
Sbjct: 201 KPSSSAAPAAPKAKPSPP--PPKEEEVEKPASSPEPK----ASKPSAPPSSGD 247
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 31.3 bits (71), Expect = 4.8
Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 652 KMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTST 711
K K P + + S+ T +KP KP K +T +P K +T S
Sbjct: 52 KPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKS---KAPSTESE 108
Query: 712 TTDSGAWTPNPTEW 725
+ TP+P
Sbjct: 109 EEEEPEETPDPIAS 122
>gnl|CDD|221824 pfam12876, Cellulase-like, Sugar-binding cellulase-like. This is a
putative cellulase family.
Length = 87
Score = 28.9 bits (65), Expect = 4.8
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 479 LLSAVVSNLQPDMETPMKSTTESQSQE---LELVEDELTTIRTQRPTRPATSSWWTP 532
+L + N P S + L L+++ +R P++P T+ W
Sbjct: 10 ILGWDLCNEPPGSPARAYPAEWSAAAVERLLRLLKEIFRWLRAVDPSQPVTAGVWAG 66
>gnl|CDD|130706 TIGR01645, half-pint, poly-U binding splicing factor, half-pint
family. The proteins represented by this model contain
three RNA recognition motifs (rrm: pfam00076) and have
been characterized as poly-pyrimidine tract binding
proteins associated with RNA splicing factors. In the
case of PUF60 (GP|6176532), in complex with p54, and in
the presence of U2AF, facilitates association of U2 snRNP
with pre-mRNA.
Length = 612
Score = 31.2 bits (70), Expect = 5.0
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 13/104 (12%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTE----------EPITTTTTSTTTTTKRPKPPTTTS 1095
P + + P + + T + E + T S++ T S
Sbjct: 291 PATVSAIPAAAAVAAAAATAKIMAAEAVAGAAVLGPRAQSPATPSSSLPTDIGNKAVV-S 349
Query: 1096 TTTTRPKPITTIKPK-PTTVKPKPTTTVKPKPTTVKPKPV-IPP 1137
+ + + + P VKP P P P P + P
Sbjct: 350 SAKKEAEEVPPLPQAAPAVVKPGPMEIPTPVPPPGLAIPSLVAP 393
>gnl|CDD|152349 pfam11914, DUF3432, Domain of unknown function (DUF3432). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 100
amino acids in length. This domain is found associated
with pfam00096. This domain has two conserved sequence
motifs: YPSPV and PSP.
Length = 100
Score = 29.0 bits (64), Expect = 5.2
Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 1070 TEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKP-TTVKPKPTTTVKPKPTT 1128
P++T + + + + P + T+ P P+ T P ++ P P T P P+
Sbjct: 3 KAAPVSTASPNISIYSSSPVSSYPSPIATSYPSPVPTSYSSPVSSCYPSPVHTSFPSPSI 62
Query: 1129 VKPKPVIPPS 1138
P + P+
Sbjct: 63 ATTYPSVSPT 72
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 31.3 bits (71), Expect = 5.3
Identities = 22/149 (14%), Positives = 35/149 (23%), Gaps = 21/149 (14%)
Query: 1009 LNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPE 1068
+ AAA G P S + ++E + T V+ + EP
Sbjct: 11 IEAAAEGGEFFPRPPATPGDAADDL--LSGSQGQLVSDSAELAAVTVVAGAAACDRFEPP 68
Query: 1069 QTEEP-----------ITTTTTSTTTTTKRPKPPT------TTSTTTTRPKPITTIKPKP 1111
P +T T S +T S+ P P P
Sbjct: 69 TGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPASPPP 128
Query: 1112 TTV--KPKPTTTVKPKPTTVKPKPVIPPS 1138
+ + V P +
Sbjct: 129 SPAPDLSEMLRPVGSPGPPPAASPPAAGA 157
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein (parp)
genes of Trypanosoma brucei encode a small family of
abundant surface proteins whose expression is restricted
to the procyclic form of the parasite. They are found at
two unlinked loci, parpA and parpB; transcription of both
loci is developmentally regulated.
Length = 145
Score = 29.9 bits (66), Expect = 5.4
Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 1/73 (1%)
Query: 1065 EEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
+EPE+ EEP + T +P +P+P +P+P +P
Sbjct: 62 DEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEP-EPEPEPEPEP 120
Query: 1125 KPTTVKPKPVIPP 1137
+P K V P
Sbjct: 121 EPGAATLKSVALP 133
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This protein,
which interacts with both microtubules and TRAF3 (tumour
necrosis factor receptor-associated factor 3), is
conserved from worms to humans. The N-terminal region is
the microtubule binding domain and is well-conserved; the
C-terminal 100 residues, also well-conserved, constitute
the coiled-coil region which binds to TRAF3. The central
region of the protein is rich in lysine and glutamic acid
and carries KKE motifs which may also be necessary for
tubulin-binding, but this region is the least
well-conserved.
Length = 506
Score = 31.0 bits (70), Expect = 5.4
Identities = 14/78 (17%), Positives = 22/78 (28%), Gaps = 9/78 (11%)
Query: 1065 EEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
+E + E K +PP + + + K V+
Sbjct: 121 KEKPKEEPK----DRKPKEEAKEKRPPKEKEKEKEKKV-----EEPRDREEEKKRERVRA 171
Query: 1125 KPTTVKPKPVIPPSTKDE 1142
K KP PP+ K E
Sbjct: 172 KSRPKKPPKKKPPNKKKE 189
>gnl|CDD|146962 pfam04574, DUF592, Protein of unknown function (DUF592). This region
is found in some SIR2 family proteins (pfam02146).
Length = 153
Score = 29.7 bits (67), Expect = 5.7
Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 18/139 (12%)
Query: 1112 TTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDL 1171
+ V P + K V PP TKD+ F + R+ KYLP++++S
Sbjct: 1 SLVPQIPKKPIIIGKNPKTGKFVFPPITKDDSLNARMFLKYYGLRKFLDKYLPTELNSLY 60
Query: 1172 CTHVI--YGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGN 1229
++I GF + D +L N Y+ V L+ + D
Sbjct: 61 IYYLIKLLGFELKDQ------------ELLNAIYKNVD--VDANSAEKLSYTDFEDPLEK 106
Query: 1230 KY-SRLV-NSQQARSKFIA 1246
K+ RL+ + Q+A +K ++
Sbjct: 107 KHIVRLIKDLQKAMNKVLS 125
>gnl|CDD|215584 PLN03113, PLN03113, DNA ligase 1; Provisional.
Length = 744
Score = 31.1 bits (70), Expect = 5.8
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 1076 TTTTSTTTTTKRPKPPT-------TTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
T + +++ KR T T + T PK TI+PK + KP+ +T+ + +
Sbjct: 25 QTQSQSSSPKKRKIGETQDANLGKTNVSEGTLPKTEDTIEPKSDSAKPRSSTSSIAEDSK 84
Query: 1129 VKPKPVIPPSTKDEFKI 1145
K S + ++
Sbjct: 85 TGTKKAQTLSKPKKDEM 101
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 31.0 bits (70), Expect = 5.8
Identities = 21/105 (20%), Positives = 40/105 (38%), Gaps = 10/105 (9%)
Query: 1043 EYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPK 1102
+Y+ T + + + + +T ++T+ + + T K+ P + PK
Sbjct: 64 KYRKTCKRCRVSDEDINRFLTKTFEDKTQVKVKVVSAPTK---KKKAMPKSVV---RAPK 117
Query: 1103 PITTIKPK---PTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
P+ P + KP P+ V P P + PS KD +
Sbjct: 118 PLENPVPAQAESSGSKPVPSIPVSTPEVKA-PAPALTPSQKDRLE 161
>gnl|CDD|218573 pfam05387, Chorion_3, Chorion family 3. This family consists of
several Drosophila chorion proteins S36 and S38. The
chorion genes of Drosophila are amplified in response to
developmental signals in the follicle cells of the ovary.
Length = 277
Score = 30.5 bits (68), Expect = 5.9
Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 10/75 (13%)
Query: 1087 RPKPPTTTSTTTTRPK-----PITTIKPKPTTVKPKPTTT-----VKPKPTTVKPKPVIP 1136
+P PP PK P +KP P K KP+ + PT + PV
Sbjct: 151 QPLPPIIVKQPGAPPKVLVNGPPLVVKPAPVIYKIKPSVIYQQEVINKVPTPLSLNPVYV 210
Query: 1137 PSTKDEFKIVCYFTN 1151
K KI
Sbjct: 211 KVYKPGKKIEAPLVP 225
>gnl|CDD|222919 PHA02688, PHA02688, ORF059 IMV protein VP55; Provisional.
Length = 323
Score = 30.4 bits (69), Expect = 6.7
Identities = 7/36 (19%), Positives = 9/36 (25%)
Query: 1091 PTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKP 1126
P S P +K K + K P
Sbjct: 23 PELKSDINPAPIEFDDVKDAEVPPSAKNLSPPKDDP 58
>gnl|CDD|212004 TIGR04281, peripla_PGF_1, putative ABC transporter PGF-CTERM-modified
substrate-binding protein. Members of this archaeal
protein family resemble periplasmic substrate-binding
proteins of ABC transporters and appear in gene
neighborhoods with permease and ATP-binding cassette
proteins. Notably, essentially all members also have the
PGF-CTERM putative protein-sorting domain at the
C-terminus, while more distant homologs (excluded by the
trusted cutoff) instead have what appear to be
lipoprotein signal peptides at the N-terminus.
Length = 330
Score = 30.4 bits (69), Expect = 7.1
Identities = 12/43 (27%), Positives = 17/43 (39%)
Query: 1057 STSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTT 1099
+ T+ PE EE T T + TT +TTT+
Sbjct: 256 AVETLAEAFHPEAYEEAETADTEADTTYDDSTTDAEDGTTTTS 298
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This family
represents the phosphoprotein of Paramyxoviridae, a
putative RNA polymerase alpha subunit that may function
in template binding.
Length = 266
Score = 30.2 bits (68), Expect = 7.2
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 1082 TTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKD 1141
T + K P + TT PK + K K ++ KP T P D
Sbjct: 41 TISEKFELPTISKPTT---PKGPCIKDEIISVNKVKDIESIYEKPVTPTSDGKTPTEKSD 97
Query: 1142 EF 1143
+
Sbjct: 98 DT 99
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional.
Length = 417
Score = 30.4 bits (68), Expect = 7.6
Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)
Query: 1075 TTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
++TT S+ + PTT T T +I T + P PT+ P P
Sbjct: 4 SSTTLSSIILSSSTLSPTTFFTIETSMDESKSIISTFTEIIPTEI------PTSESPSP 56
>gnl|CDD|236797 PRK10927, PRK10927, essential cell division protein FtsN;
Provisional.
Length = 319
Score = 30.4 bits (68), Expect = 7.7
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
E T E+ + T + + ++ TE+ T ++ + +P + +
Sbjct: 143 EQTPEQRQQTLQRQRQAQQLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPAS 202
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTV-------KPKPTTVK 1130
T +P P TT + KP PKPT K
Sbjct: 203 TQQPYQDLLQTPAHTTAQSKPQQAAPVTRAADAPKPTAEK 242
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 30.5 bits (68), Expect = 7.7
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 10/84 (11%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKP------TTVKPK 1117
T EP I+ + + + T K P TT +P P K KP KPK
Sbjct: 155 TVEPGTKVAIISKSEDAASQVTPSQKIPETTDP---KPSPPAEDKQKPKVESAPVAEKPK 211
Query: 1118 PTTTVKPKPTTVKPKPVIPPSTKD 1141
++ P P +P +PP ++
Sbjct: 212 APSS-PPPPKQSAKEPQLPPKERE 234
>gnl|CDD|227434 COG5103, CDC39, Cell division control protein, negative regulator of
transcription [Cell division and chromosome partitioning
/ Transcription].
Length = 2005
Score = 30.7 bits (69), Expect = 8.1
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 535 TTESTQEEYIPETCVNGDYLPDPDDCRSFLICS 567
++ E ++P+ GDY D RSF S
Sbjct: 1513 FNDTVPEMFLPQLMERGDY-SASLDIRSFFKVS 1544
>gnl|CDD|218481 pfam05177, RCSD, RCSD region. Proteins contain this region include
C.elegans UNC-89. This region is found repeated in UNC-89
and shows conservation in prolines, lysines and glutamic
acids. Proteins with RCSD are involved in muscle M-line
assembly, but the function of this region RCSD is not
clear.
Length = 101
Score = 28.7 bits (63), Expect = 8.1
Identities = 20/85 (23%), Positives = 28/85 (32%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
P +E P S S TEE TEE + + KP + T + K T
Sbjct: 5 PGKKEKSPLRRSPSRTEKTEEDRATEEAKSPEKKEKSPEKVDGKPKSPTKKEKSPEKSAT 64
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVK 1130
PT + P + + K
Sbjct: 65 EEVKSPTKKEKSPEKVEEKPASPTK 89
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 30.5 bits (68), Expect = 8.4
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 1046 PTSEESKPTTVSTS-TVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT--TTRPK 1102
P P + S T T + Q + ++ + TT T P +++S +T P
Sbjct: 1201 PIFTYIPPGIIGMSGTNTFTFKAAQLQLSAASSPPAATTPTPPPSSSSSSSAQSISTSPG 1260
Query: 1103 PITTIKPKPTTVK 1115
I + TT+
Sbjct: 1261 QIQIVLNGSTTIH 1273
>gnl|CDD|165461 PHA03191, PHA03191, UL14 tegument protein; Provisional.
Length = 238
Score = 30.0 bits (67), Expect = 8.6
Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 7/81 (8%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVK---PKPTT 1120
EE ++ E + T R T T T PT V+ + T
Sbjct: 137 IEELDEEAEALLTKWILEQKPRPRLPTAKTAPPHTRDGTRTTEKARVPTGVQDTNSQATD 196
Query: 1121 TVKPKPTTVKP----KPVIPP 1137
P PTT P + VI P
Sbjct: 197 QNLPPPTTSTPSISREHVIHP 217
>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106). This
family of proteins are found in large numbers in the
Trichomonas vaginalis proteome. The function of this
protein is unknown.
Length = 422
Score = 30.4 bits (68), Expect = 8.7
Identities = 25/130 (19%), Positives = 44/130 (33%), Gaps = 6/130 (4%)
Query: 1018 VHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEP-ITT 1076
V+ L T ++V + G Y Y P +++ T + P + P +
Sbjct: 131 VNAFLRTKSQVGHYAADGTYVPAGGTYIPAG---GTYILASGTYIPPNPPREAPAPGLPK 187
Query: 1077 TTTSTTTTTKR--PKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPV 1134
T TS+ R PKP + +P + +P+ + T +
Sbjct: 188 TFTSSHGHRHRHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQ 247
Query: 1135 IPPSTKDEFK 1144
PP T+ K
Sbjct: 248 QPPQTEQGHK 257
>gnl|CDD|227600 COG5275, COG5275, BRCT domain type II [General function prediction
only].
Length = 276
Score = 30.1 bits (67), Expect = 8.9
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 1049 EESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIK 1108
+ TT + I+ T+T+ P +T+ ++P T
Sbjct: 10 SDGVSTTPDEYFEQQSTRSRSKPRIISNKETTTSKDVVHPVKTELDTTSDSKPVVHQTRA 69
Query: 1109 -PKPTTVKPKPTTTVKPKPTTVKP 1131
KP K + +TT K K T
Sbjct: 70 TRKPAQPKAEKSTTSKSKSHTTTA 93
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences recognised
by sporozoite-neutralising murine monoclonal antibodies.
Length = 727
Score = 30.4 bits (68), Expect = 9.2
Identities = 30/142 (21%), Positives = 52/142 (36%), Gaps = 18/142 (12%)
Query: 990 MGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSE 1049
+G+P G A +L +PG GV L + V + E T++ +
Sbjct: 197 VGVPGGGGAGALPGVGVGRA-GVSPGVGVGGL-GGVPGVGILASNTSREGQTQDDQERDG 254
Query: 1050 ESKPTT-----------VSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
+ + STS+ TT T TTTT +++ + P +++
Sbjct: 255 DGRVIEPGVGLPGVRVGDSTSSPSTTRPSGST----TTTTPASSGPSAPGGPGSSSRNAV 310
Query: 1099 TRPKPITTIKPKPTTVKPKPTT 1120
TR + P P+ P+ T
Sbjct: 311 TRSTDSIS-GPIPSPGAPRAIT 331
>gnl|CDD|184285 PRK13733, PRK13733, conjugal transfer protein TraV; Provisional.
Length = 171
Score = 29.4 bits (66), Expect = 9.6
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 1073 PITTTTTSTTTTTKRPKPPTTTST---TTTRPKPITTIKPKPTTVKPKPTTT--VKPKP 1126
T + T TT P T+T P+P+ T + TV P + T P+P
Sbjct: 70 FRTMPVQTVTATTPSGSRPAVTATPEQKLLAPRPLFTAAREVKTVVPVSSVTPVTPPRP 128
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 75,709,544
Number of extensions: 7403565
Number of successful extensions: 10380
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8896
Number of HSP's successfully gapped: 443
Length of query: 1490
Length of database: 10,937,602
Length adjustment: 109
Effective length of query: 1381
Effective length of database: 6,103,016
Effective search space: 8428265096
Effective search space used: 8428265096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (29.2 bits)