RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10300
(1490 letters)
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural plasticity,
functional versatility, immune system; 1.31A {Mus
musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 462 bits (1190), Expect = e-150
Identities = 136/359 (37%), Positives = 204/359 (56%), Gaps = 24/359 (6%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
++++CY+T+WA R G + P +ID LCTH+IY FA + +++ + D +
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTH-----EQDLRD 55
Query: 1203 YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
YE + LK K +K LAIGGW +S +V++ Q R FI V+ F+ ++NFDGL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGP-APFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH-------DLLLSAAVSPSKAV 1313
+LDW+YP + P DK F+ L+KE+R AF LLL++ + V
Sbjct: 115 NLDWQYPGS-----RGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 1314 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTT--PTFNANYSLHYW 1371
I + Y IP +S++LD+I VMTYD H D TG +P+Y P D N + + YW
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1431
HGA +K+I G P YG +F L+D +K G+ + T G+ T G LAYYE+C +
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL 289
Query: 1432 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+G V D + PYA++G++WVG+D+ KA+++K N+LGGA++W LD+DDF
Sbjct: 290 -NEGATEVWDAPQE-VPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDF 346
Score = 350 bits (899), Expect = e-109
Identities = 101/279 (36%), Positives = 151/279 (54%), Gaps = 22/279 (7%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
++++CY+T+WA RP +G + P +I LCTH++Y FA + + + + D R
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITY-----THEQDLRD 55
Query: 810 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
YE + LK K +K LAIGGW +S +V++ RQ FI+ V++FL +Y FDGL
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFG-PAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 920
+LDW+YP P DK F + V+E+ +AF+ LLL++ + V
Sbjct: 115 NLDWQYPGS-----RGSPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDV 169
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYW 978
I + Y + LS+SLD+I VMTYD H D TG +PLY+ P D N + ++YW
Sbjct: 170 IKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKSADLNVDSIISYW 229
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GA S KL++G P YG F L++ + G+ A G
Sbjct: 230 KDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTG 268
Score = 282 bits (724), Expect = 4e-85
Identities = 110/393 (27%), Positives = 178/393 (45%), Gaps = 42/393 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+Q++CY + + R +F N+ P +CTH+IYA+A + E
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQNNEITYTHEQDL-----RD 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++ GLK+ N ELK LA+ + F ++ S ++R FI SV+ Y FDGL+
Sbjct: 56 YEALNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLN 115
Query: 238 LNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLR-------RNNYQLTLTSPG 287
L D P D + FS ++E+ LT T G
Sbjct: 116 L---DWQYPGSRGSPPKD-------KHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAG 165
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSF----NNDHMDDEVVPVKPNTKVNIQVTSTIANFN 343
+ID S I ++ +D I + ++ D E P+ + +
Sbjct: 166 IIDVIKSGYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPY-----DIGKSADL 220
Query: 344 NIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYL 403
N++S + W GA E++I+G P +G ++ L + S+ G+GA G GKYT G L
Sbjct: 221 NVDSIISYWKDHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLL 280
Query: 404 AFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWT 463
A++EVC + + P+ + +EW+ Y+N S + K ++KD +LGGA++W
Sbjct: 281 AYYEVCTFLNEGATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWP 340
Query: 464 LDLDDFRG-FCGQ-KYPLLSAVVSNLQPDMETP 494
LD+DDF G FC Q +PL S + +L +
Sbjct: 341 LDMDDFSGSFCHQRHFPLTSTLKGDLNIHSASC 373
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 460 bits (1185), Expect = e-149
Identities = 140/358 (39%), Positives = 202/358 (56%), Gaps = 26/358 (7%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
K+VCYFTNWA YRQ ++LP D+D LCTH+IY FA + QL + D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN-----DETLY 56
Query: 1204 EKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
++ LKK +K LAIGGWN K++ +V + R F+ + F+ +++FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFG-TQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH-------DLLLSAAVSPSKAVI 1314
LDWEYP + PA DK+ F L+++L AF LLLSAAV + +
Sbjct: 116 LDWEYP-----GSQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYWV 1372
D Y++ +++NLD++++M YD+HG W+K TGH +P+Y ++ + N + ++ W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 1373 SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQ 1432
G K+I GMP YG+SFTLA + + + G G T+ G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCS--- 287
Query: 1433 KDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G R + ++ PY F+ +QWVGFDD K ++K LGGAM+WALDLDDF
Sbjct: 288 WKGATKQRIQDQK-VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDF 344
Score = 353 bits (907), Expect = e-109
Identities = 112/278 (40%), Positives = 167/278 (60%), Gaps = 22/278 (7%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
K+VCYFTNWA YR G+ +++P+D+ LCTH++Y FA + + L W D Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLST---TEWND--ETLY 56
Query: 811 ERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD 868
+ LKK +K LAIGGWN K++ +V +A RQ F+ ++FL KY FDGLD
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFG-TQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLD 115
Query: 869 LDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVI 921
LDWEYP P DKE F V++L AF+ LLLSAAV + +
Sbjct: 116 LDWEYPGS-----QGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYV 170
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYWM 979
+A Y+V ++++LD++++M YD+HG W+K TGH +PLY+ ++ N + + W+
Sbjct: 171 DAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWL 230
Query: 980 KKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
+KG P+ KL++GMP YG++F+LA+S+D + A A G+G
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSG 268
Score = 323 bits (830), Expect = 1e-98
Identities = 121/490 (24%), Positives = 219/490 (44%), Gaps = 68/490 (13%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
++VCY + YR A F K++ P +CTH+IYA+A + + + D + Y
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMTNHQLSTTEWN---D--ETLY 56
Query: 185 KSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDL 238
+ F GLK+ NP+LK LA+ F + + +R F++S + Y FDGLDL
Sbjct: 57 QEFNGLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDL 116
Query: 239 NVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLR-------RNNYQLTLTSPGV 288
D P S A ++ F+T +Q+L++ + + L+ P
Sbjct: 117 ---DWEYPG-------SQGSPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAG 166
Query: 289 IDRKTSLVDISVVAPLVDLILLKSFNN----DHMDDEVVPVKPNTKVNIQVTSTIANFNN 344
+ ++ +A +D + L +++ + + P+ + + A N
Sbjct: 167 QTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEES-----GAAASLN 221
Query: 345 IESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLA 404
+++AV W++KG ++I+G+P +G+S+ L + S+ +GA G GT G +T+ G LA
Sbjct: 222 VDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLA 281
Query: 405 FFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTL 464
++EVC+ + P++ + ++W+ +++ +S + K++Y+K + LGGAM+W L
Sbjct: 282 YYEVCSWKGAT--KQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWAL 339
Query: 465 DLDDFRG-FCGQ-KYPLLSAVVSNLQPDMETPMKSTTESQSQELELVEDELTTIRTQRPT 522
DLDDF G C Q +YPL+ + L L + + P
Sbjct: 340 DLDDFAGFSCNQGRYPLIQTLRQEL------------------------SLPYLPSGTPE 375
Query: 523 RPATSSWWTPITTTESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLW 582
+ + P+P + SF C+ G L +QSC L++
Sbjct: 376 LEVPKPGQPSEPEHGPSPGQDTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVF 435
Query: 583 NAKKKLCDWS 592
+ K C W+
Sbjct: 436 SNSCKCCTWN 445
Score = 53.6 bits (129), Expect = 3e-07
Identities = 10/49 (20%), Positives = 17/49 (34%)
Query: 610 PKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDW 658
+ P + + + C G SC GL +++ K C W
Sbjct: 396 DTFCQGKADGLYPNPRERSSFYSCAAGRLFQQSCPTGLVFSNSCKCCTW 444
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo sapiens}
PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A* 2ybt_A*
2ybu_A*
Length = 395
Score = 453 bits (1168), Expect = e-147
Identities = 139/359 (38%), Positives = 208/359 (57%), Gaps = 24/359 (6%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+++ CYFTNWA YR G+++P DI+ LCTH+IY FA + +++ W D+
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITT---IEWNDVTL-- 55
Query: 1203 YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ LK K +K LAIGGWN ++ +V++ + R FI V+ F+ ++ FDGL
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFG-TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH-------DLLLSAAVSPSKAV 1313
D DWEYP + P DK F L++E+R AF L+++AAV+ +
Sbjct: 115 DFDWEYPGS-----RGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 1314 IDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT--TPTFNANYSLHYW 1371
I + Y+IP +S+ LD+I VMTYD HG W+ TG +P+Y P DT N +Y ++YW
Sbjct: 170 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 229
Query: 1372 VSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKI 1431
+GA +K+I G P YG +F L++ + G+ + T G AG + G AYYEIC +
Sbjct: 230 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFL 289
Query: 1432 QKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
K+G D + PYA++G+ WVG+D+ KA+++K+N GGAM+WA+DLDDF
Sbjct: 290 -KNGATQGWDAPQE-VPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDF 346
Score = 343 bits (883), Expect = e-106
Identities = 113/279 (40%), Positives = 162/279 (58%), Gaps = 22/279 (7%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+++ CYFTNWA YRPG G+++P+DI LCTH++Y FA + + + W D
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITT---IEWNDVTL-- 55
Query: 810 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ LK K +K LAIGGWN ++ +V++ RQ FI V+KFL +Y+FDGL
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFG-TAPFTAMVSTPENRQTFITSVIKFLRQYEFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQV 920
D DWEYP P DK F + V+E+ +AF+ L+++AAV+
Sbjct: 115 DFDWEYP-----GSRGSPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISN 169
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD--DFFYFNANFTMNYW 978
I + Y++ LS+ LD+I VMTYD HG W+ TG +PLY++P D Y N ++ MNYW
Sbjct: 170 IQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYW 229
Query: 979 MKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GAP+ KL++G P YG F L+N ++ G+ A GAG
Sbjct: 230 KDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAG 268
Score = 281 bits (720), Expect = 2e-84
Identities = 106/407 (26%), Positives = 180/407 (44%), Gaps = 42/407 (10%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+Q+ CY + YR F ++ P +CTH+IYA+A + I + DV
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGMQNNEITTIEWN---DV--TL 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++F GLK N +LK LA+ + F ++ S E+R FI+SV++ Y+FDGLD
Sbjct: 56 YQAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLD 115
Query: 238 LNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLR-------RNNYQLTLTSPGVID 290
+ + P D + F+ +QE+ + +T I
Sbjct: 116 FDWEYPGSRGSPPQD-------KHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGIS 168
Query: 291 RKTSLVDISVVAPLVDLILLKSFNN----DHMDDEVVPVKPNTKVNIQVTSTIANFNNIE 346
S +I ++ +D I + +++ + E P+ + + N++
Sbjct: 169 NIQSGYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPT-----DTGSNAYLNVD 223
Query: 347 SAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFF 406
+ W GA E++I+G P +G ++ L N S G+GA G G G Y + G A++
Sbjct: 224 YVMNYWKDNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYY 283
Query: 407 EVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDL 466
E+C K+ + + P+ + + W+ Y+N S K ++K GGAM+W +DL
Sbjct: 284 EICTFLKNGATQGWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDL 343
Query: 467 DDFRG-FCGQ-KYPLLSAVVSNL------QPDMETPMKSTTESQSQE 505
DDF G FC Q K+PL+S + L P++ T +
Sbjct: 344 DDFTGTFCNQGKFPLISTLKKALGLQSASCTAPAQPIEPITAAPGSH 390
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG MAN;
1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB: 2dpe_A*
1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A* 2fdm_A*
2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A* 2b31_A*
1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 451 bits (1163), Expect = e-147
Identities = 141/357 (39%), Positives = 203/357 (56%), Gaps = 29/357 (8%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K++CY+T+W+ YR+ G P ID LCTHVIY FA + +++ DTW D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 1203 YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + LK + +K L++GGWN ++S++ + Q+R FI V F+ H FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN------PHDLLLSAAVSPSKAVI 1314
DL W YP DK+ L+KE++A F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDT-TPTFNANYSLHYWVS 1373
D YDI +S +LD+IS++TYD+HG W + GH +P++ D + NA+Y++ Y +
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 1374 HGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQK 1433
GA K++ G+P +G+SFTLA + + G G T+ +G LAYYEICD +
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSK-TDVGAPVSGPGIPGRFTKEKGILAYYEICDFLHG 283
Query: 1434 DGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
RD++ PYA KG+QWV +DDQ + +KA ++K L GAM+WALDLDDF
Sbjct: 284 ATTHRFRDQQ---VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDF 337
Score = 345 bits (886), Expect = e-107
Identities = 100/277 (36%), Positives = 156/277 (56%), Gaps = 26/277 (9%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K++CY+T+W+ YR G G P+ I LCTH++Y FA + + + D+W D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 810 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + TLK + +K L++GGWN ++S++ + +R+ FI+ V FL + FDGL
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFG-PERFSKIASKTQSRRTFIKSVPPFLRTHGFDGL 114
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF------KPHGLLLSAAVSPSKQVI 921
DL W YP DK V+E+ F LLLSAAVS K I
Sbjct: 115 DLAWLYPG----------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAI 164
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFF-YFNANFTMNYWMK 980
+ YD+ +S LD+IS++TYD+HG W + GH +PL+ +D + NA++ ++Y ++
Sbjct: 165 DRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFSNADYAVSYMLR 224
Query: 981 KGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
GAP+ KLVMG+P +G++F+LA+S + A G G
Sbjct: 225 LGAPANKLVMGIPTFGRSFTLASSK-TDVGAPVSGPG 260
Score = 277 bits (710), Expect = 2e-83
Identities = 108/386 (27%), Positives = 173/386 (44%), Gaps = 50/386 (12%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
++++CY + S YR + + P +CTHVIY +A I D
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANISNNEI-----DTWEWNDVTL 55
Query: 184 YKSFLGLKEANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y + LK NP+LK L+V F I S +SR FI SV + FDGLD
Sbjct: 56 YDTLNTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLD 115
Query: 238 LNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLRRN------NYQLTLTSPGV 288
L P ++ +T ++E+ + R L+
Sbjct: 116 L---AWLYPG------------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAG 160
Query: 289 IDRKTSLVDISVVAPLVDLILLKSFNN----DHMDDEVVPVKPNTKVNIQVTSTIANFNN 344
DI+ ++ +D I L +++ P+ + + F+N
Sbjct: 161 KIAIDRGYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNE------DASSRFSN 214
Query: 345 IESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLA 404
+ AV ++ GA ++++GIP FG+S+ L + S+ +GA V GPG G++T+ G LA
Sbjct: 215 ADYAVSYMLRLGAPANKLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILA 273
Query: 405 FFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTL 464
++E+C+ T F D P+ K ++W+ Y++ +S++ K Y+K+R L GAM+W L
Sbjct: 274 YYEICDFLHGATTHRFRDQQV-PYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWAL 332
Query: 465 DLDDFRGFC---GQKYPLLSAVVSNL 487
DLDDFRG +PL SAV L
Sbjct: 333 DLDDFRGTFCGQNLTFPLTSAVKDVL 358
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin, chitooligosaccharide,
pseudochitinase, HY; HET: NAG; 1.95A {Homo sapiens}
Length = 365
Score = 450 bits (1159), Expect = e-146
Identities = 135/361 (37%), Positives = 211/361 (58%), Gaps = 33/361 (9%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
+K+VCYFTNW+ RQ GK+ P +ID LC+H+IY FA ++ ++++IK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 1203 YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
Y+ + +LK K +K+ L+IGG+ + +V+S +R +FI ++ F+ HNFDGL
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFG-SKGFHPMVDSSTSRLEFINSIILFLRNHNFDGL 115
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAV 1313
D+ W YP + F LI EL AF LLL+A VS + +
Sbjct: 116 DVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQM 165
Query: 1314 IDNAYDIPVMSENLDWISVMTYDYHGQWDKK--TGHVAPMYALPNDTTPT--FNANYSLH 1369
IDN+Y + ++++LD+I+++++D+HG W+K TGH +P+ D P+ +N Y++
Sbjct: 166 IDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVG 225
Query: 1370 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD 1429
YW+ G +KV+ G+P YG SFTLA + + G AG T + GFLAYYEIC
Sbjct: 226 YWIHKGMPSEKVVMGIPTYGHSFTLASAE-TTVGAPASGPGAAGPITESSGFLAYYEICQ 284
Query: 1430 KIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
++ ++D++ PYA KG+QWVG+DD + K +F+K +LGGAMIW++D+DD
Sbjct: 285 FLKGAKITRLQDQQ---VPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
Query: 1490 F 1490
F
Sbjct: 342 F 342
Score = 336 bits (863), Expect = e-104
Identities = 100/281 (35%), Positives = 163/281 (58%), Gaps = 30/281 (10%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
+K+VCYFTNW+ R GK+ PE+I LC+H++Y FA +++ +IIK +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKS-----EVML 56
Query: 810 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
Y+ + +LK K +K+ L+IGG+ + +V+S+T+R FI ++ FL + FDGL
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFG-SKGFHPMVDSSTSRLEFINSIILFLRNHNFDGL 115
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFK-------PHGLLLSAAVSPSKQV 920
D+ W YP + F + + EL +AF+ LLL+A VS +Q+
Sbjct: 116 DVSWIYPD----------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQM 165
Query: 921 INAAYDVKALSESLDWISVMTYDYHGQWDKK--TGHVAPLYEHPDD--DFFYFNANFTMN 976
I+ +Y V+ L++ LD+I+++++D+HG W+K TGH +PL + D Y+N + +
Sbjct: 166 IDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVG 225
Query: 977 YWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
YW+ KG PS K+VMG+P YG +F+LA++ + A A G G
Sbjct: 226 YWIHKGMPSEKVVMGIPTYGHSFTLASAE-TTVGAPASGPG 265
Score = 280 bits (719), Expect = 1e-84
Identities = 105/388 (27%), Positives = 180/388 (46%), Gaps = 51/388 (13%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGG 183
+++VCY S R P F +N+ P +C+H+IY++A+I+ + +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASIENNKVIIKDKSEV-----ML 56
Query: 184 YKSFLGLKEANPELKVYLAV-----KSNFVS-ITSDRESRLNFISSVLEMFDMYKFDGLD 237
Y++ LK NP+LK+ L++ S + SRL FI+S++ + FDGLD
Sbjct: 57 YQTINSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLD 116
Query: 238 LNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLRRN-------NYQLTLTSPG 287
+ P E + F+ I EL+ +++ LT
Sbjct: 117 V---SWIYPD------------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSA 161
Query: 288 VIDRKTSLVDISVVAPLVDLILLKSF------NNDHMDDEVVPVKPNTKVNIQVTSTIAN 341
+ + +A +D I L SF + P+ + ++
Sbjct: 162 GRQMIDNSYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQD-----RGPSS 216
Query: 342 FNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPG 401
+ N+E AV WI KG E++++GIP +G S+ L + +E +GA GPG G T+ G
Sbjct: 217 YYNVEYAVGYWIHKGMPSEKVVMGIPTYGHSFTLAS-AETTVGAPASGPGAAGPITESSG 275
Query: 402 YLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAML 461
+LA++E+C K D P+ VK ++W+ Y++ S+ K+ ++K+ +LGGAM+
Sbjct: 276 FLAYYEICQFLKGAKITRLQDQQV-PYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMI 334
Query: 462 WTLDLDDFRGFC--GQKYPLLSAVVSNL 487
W++D+DDF G YPL+ AV +L
Sbjct: 335 WSIDMDDFTGKSCNQGPYPLVQAVKRSL 362
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA MAN;
1.30A {Drosophila melanogaster} SCOP: c.1.8.5 d.26.3.1
PDB: 1jne_A*
Length = 420
Score = 424 bits (1091), Expect = e-136
Identities = 101/400 (25%), Positives = 180/400 (45%), Gaps = 54/400 (13%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDID--SDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNK 1201
+VCY+ + ++ R+ GK L D++ C+H++YG+A L + L + D+
Sbjct: 3 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 62
Query: 1202 FYEKVTALKKK--GVKVTLAIGGWNDSA---GNKYSRLV-NSQQARSKFIAHVVNFILEH 1255
+ +VT+LK+K +KV L++GG +D NKY L+ + + FI + +
Sbjct: 63 QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 122
Query: 1256 NFDGLDLDWEYPK------------CWQVDCKQ---------GPASDKQGFADLIKELRA 1294
FDGLDL +++PK W+ K A K+ F L+++++
Sbjct: 123 GFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKD 182
Query: 1295 AFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQW--DKKTGHVAPMY 1352
+ LLS V P+ +DIP ++ +D++++ T+D+ ++ + AP+Y
Sbjct: 183 SLRADGFLLSLTVLPNVNSTWY-FDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIY 241
Query: 1353 ALPNDTT--PTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKN---GLNSQTY 1407
NA++ + YW+S G K+ G+ YG ++ L + + +T
Sbjct: 242 HPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETS 301
Query: 1408 GGAEAGENTRARGFLAYYEICDKIQKDGWVV----------VRDRKRRIGPYAFK----- 1452
G A G ++ G L+Y EIC K+ V D +R G A++
Sbjct: 302 GPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQ 361
Query: 1453 --GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
WV +DD +KA + + +LGG ++ L DDF
Sbjct: 362 ITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDF 401
Score = 333 bits (855), Expect = e-102
Identities = 79/303 (26%), Positives = 135/303 (44%), Gaps = 37/303 (12%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDL--CTHIVYGFAVLDSENLIIKAHDSWADFDNR 808
+VCY+ + ++ R G GK + D+ L C+H+VYG+A L ENL + + D
Sbjct: 3 NLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKH 62
Query: 809 FYERVVTLKKK--GVKVSLAIGGWNDS---LGGKYSRLV-NSATARQRFIEHVVKFLLKY 862
+ V +LK+K +KV L++GG +D KY L+ + FI + + Y
Sbjct: 63 QFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTY 122
Query: 863 QFDGLDLDWEYPT---------------------CWQVNCDAGPDSDKESFGLFVRELHQ 901
FDGLDL +++P D KE F VR++
Sbjct: 123 GFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKD 182
Query: 902 AFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQW--DKKTGHVAPLY 959
+ + G LLS V P+ +D+ AL+ +D++++ T+D+ ++ + AP+Y
Sbjct: 183 SLRADGFLLSLTVLPNVNST-WYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIY 241
Query: 960 EHPDD--DFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDH---GLNAAAP 1014
+ NA+F + YW+ +G PS K+ +G+ YG A+ L + +
Sbjct: 242 HPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETS 301
Query: 1015 GAG 1017
G
Sbjct: 302 GPA 304
Score = 273 bits (700), Expect = 2e-81
Identities = 95/425 (22%), Positives = 162/425 (38%), Gaps = 67/425 (15%)
Query: 124 HQVVCYVEAKSAYRHRPATFNVKNVIP--QICTHVIYAYAAIDPVSRALIPEDLEYDVIK 181
+VCY ++ S R ++ Q C+H++Y YA + + + D+ K
Sbjct: 2 SNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYK 61
Query: 182 GGYKSFLGLKEANPELKVYLAV-----------KSNFVSITSDRESRLNFISSVLEMFDM 230
+ LK P LKV L+V + ++ ++ FI S E+
Sbjct: 62 HQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKT 121
Query: 231 YKFDGLDL-------------------NVKDPALNDEDDDDLESIANERSDFSTFIQELS 271
Y FDGLDL L D A + F+ ++++
Sbjct: 122 YGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVK 181
Query: 272 STLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF------NNDHMDDEVVPV 325
+LR + + L+LT ++ T DI + LVD + L +F N D P+
Sbjct: 182 DSLRADGFLLSLTVLPNVN-STWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 326 KPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEY---G 382
+ N + V W+ +G +I +G+ +G +++L S
Sbjct: 241 YHPDG-----SKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVP 295
Query: 383 LGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE---------------- 426
+ GP EG +Q PG L++ E+C K + + +
Sbjct: 296 VVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAY 355
Query: 427 ---PFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQ-KYPLLSA 482
+ + W++Y++ DS K Y + ++LGG L+ L DDFRG C KYP+L A
Sbjct: 356 RPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRA 415
Query: 483 VVSNL 487
+ L
Sbjct: 416 IKYRL 420
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET: FLC;
2.01A {Arabidopsis thaliana}
Length = 356
Score = 420 bits (1081), Expect = e-135
Identities = 93/348 (26%), Positives = 148/348 (42%), Gaps = 32/348 (9%)
Query: 1153 AWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK 1212
A Y ++ +DIDS L TH+ FA L++ + KF ++++
Sbjct: 7 ASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSAN---QPKFSTFTQTVQRR 63
Query: 1213 --GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCW 1270
VK L+IGG Y+ + ++ +R FI + + F GLDLDWEYP
Sbjct: 64 NPSVKTLLSIGGGIAD-KTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP--- 119
Query: 1271 QVDCKQGPASDKQGFADLIKELRAAFN-------PHDLLLSAAVSPSKAVIDNAYDIPVM 1323
A++ F L++E R+A LLL+AAV S Y + +
Sbjct: 120 ------SSATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAV 173
Query: 1324 SENLDWISVMTYDYHGQ-WDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVI 1382
+ +LDW+++M YD++G W + TG A ++ N + + W+ G KK +
Sbjct: 174 ASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAG---PSGDAGTRSWIQAGLPAKKAV 230
Query: 1383 FGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDR 1442
G P YG ++ L + N + Y G G + Y +I I +G V +
Sbjct: 231 LGFPYYGYAWRLTNANSHS-----YYAPTTGAAISPDGSIGYGQIRKFIVDNGATTVYN- 284
Query: 1443 KRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+G Y + G W+G+DD I K + K L G W + DD
Sbjct: 285 STVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDN 332
Score = 324 bits (832), Expect = e-100
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 26/268 (9%)
Query: 760 AWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK 819
A Y ++ DI + L TH+ FA L+S+ + + +F T++++
Sbjct: 7 ASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSAN---QPKFSTFTQTVQRR 63
Query: 820 --GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW 877
VK L+IGG Y+ + ++ T+R+ FI+ ++ Y F GLDLDWEYP
Sbjct: 64 NPSVKTLLSIGGGIAD-KTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP--- 119
Query: 878 QVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVINAAYDVKAL 930
++ +FG +RE A LLL+AAV S + Y V A+
Sbjct: 120 ------SSATEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAV 173
Query: 931 SESLDWISVMTYDYHGQ-WDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLV 989
+ SLDW+++M YD++G W + TG A L++ + + + W++ G P++K V
Sbjct: 174 ASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAGP---SGDAGTRSWIQAGLPAKKAV 230
Query: 990 MGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
+G P YG A+ L N+N H A GA
Sbjct: 231 LGFPYYGYAWRLTNANSHSYYAPTTGAA 258
Score = 248 bits (635), Expect = 2e-73
Identities = 73/379 (19%), Positives = 142/379 (37%), Gaps = 51/379 (13%)
Query: 132 AKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLK 191
K++Y + F V ++ + TH+ A+A ++ + + ++
Sbjct: 5 VKASYWFPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKF---STFTQTVQ 61
Query: 192 EANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKD--- 242
NP +K L++ K+ + S+ S+ SR +FI S + + Y F GLDL D
Sbjct: 62 RRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDL---DWEY 118
Query: 243 PALNDEDDDDLESIANERSDFSTFIQELSSTL-------RRNNYQLTLTSPGVIDRKTSL 295
P+ + + ++F T ++E S + + L + + L
Sbjct: 119 PS-SATE----------MTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVL 167
Query: 296 VDISVVAPLVDLILLKS--FNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWI 353
+S VA +D + L + F T + + ++ +WI
Sbjct: 168 YPVSAVASSLDWVNLMAYDFYGPGWS-------RVTGPPAALFDPSNAGPSGDAGTRSWI 220
Query: 354 KKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFK 413
+ G ++ ++G P++G ++RL N + + A G G + + ++
Sbjct: 221 QAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAAISP-----DGSIGYGQIRKFIV 275
Query: 414 DKTW-RHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGF 472
D + + + WI Y++N SI K+ Y K R L G W + DD G
Sbjct: 276 DNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGL 335
Query: 473 C---GQKYPLLSAVVSNLQ 488
Q + +A +Q
Sbjct: 336 SRAASQAWDATTATTRTIQ 354
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB: 3alg_A*
Length = 353
Score = 416 bits (1072), Expect = e-134
Identities = 94/349 (26%), Positives = 148/349 (42%), Gaps = 31/349 (8%)
Query: 1153 AWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK 1212
Y ++IDS L TH+ FA L+ + D +F + +++K
Sbjct: 6 GGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQF---TSTVQRK 62
Query: 1213 --GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCW 1270
VK L+I G + Y + +R FI + + F GLDLDWEYP
Sbjct: 63 NPSVKTFLSIAGGRAN-STAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP--- 118
Query: 1271 QVDCKQGPASDKQGFADLIKELRAAFNP-------HDLLLSAAVSPSKAVIDNAYDIPVM 1323
A+D L+ E R A N LLL+AAVS S V Y + +
Sbjct: 119 ------LSAADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESL 172
Query: 1324 SENLDWISVMTYDYHGQWD--KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKV 1381
+ NLDWI++M YD++G +T A ++ N + + ++ W+ G KK+
Sbjct: 173 ARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNH----VSGSDGINAWIQAGVPTKKL 228
Query: 1382 IFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRD 1441
+ G+P YG ++ L + N +GL + G + G G + Y I D I + V +
Sbjct: 229 VLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRDYIVESRATTVYN 286
Query: 1442 RKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+G Y + G W+ +DD + +K +VK L G W + D
Sbjct: 287 -ATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQN 334
Score = 316 bits (813), Expect = 2e-97
Identities = 79/269 (29%), Positives = 127/269 (47%), Gaps = 28/269 (10%)
Query: 760 AWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKK 819
Y +I + L TH+ FA L+ + + D F + T+++K
Sbjct: 6 GGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQD---SFRQFTSTVQRK 62
Query: 820 --GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCW 877
VK L+I G + Y + +R+ FI+ ++ + F GLDLDWEYP
Sbjct: 63 NPSVKTFLSIAGGRAN-STAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP--- 118
Query: 878 QVNCDAGPDSDKESFGLFVRELHQAFKPHG-------LLLSAAVSPSKQVINAAYDVKAL 930
+D + G + E A LLL+AAVS S +V Y V++L
Sbjct: 119 ------LSAADMTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESL 172
Query: 931 SESLDWISVMTYDYHGQWD--KKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKL 988
+ +LDWI++M YD++G +T A L++ + + + + +N W++ G P++KL
Sbjct: 173 ARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVN----HVSGSDGINAWIQAGVPTKKL 228
Query: 989 VMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
V+G+P YG A+ L N+N HGL A A G
Sbjct: 229 VLGIPFYGYAWRLVNANIHGLRAPAAGKS 257
Score = 251 bits (644), Expect = 1e-74
Identities = 71/374 (18%), Positives = 141/374 (37%), Gaps = 43/374 (11%)
Query: 133 KSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKE 192
K Y + + + N+ + TH+ A+A ++P LI D + ++
Sbjct: 5 KGGYWFKDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSF---RQFTSTVQR 61
Query: 193 ANPELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKD---P 243
NP +K +L++ + + + SR +FI S + + F GLDL D P
Sbjct: 62 KNPSVKTFLSIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDL---DWEYP 118
Query: 244 ALNDEDDDDLESIANERSDFSTFIQELSSTLR-------RNNYQLTLTSPGVIDRKTSLV 296
+ D ++ T + E + + R LT
Sbjct: 119 L-SAAD----------MTNLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNY 167
Query: 297 DISVVAPLVDLILLKSFNND-HMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKK 355
+ +A +D I L ++ D + + T + Q+ + + + + WI+
Sbjct: 168 PVESLARNLDWINLMAY--DFYGPNWSPSQ---TNSHAQLFDPVNHVS-GSDGINAWIQA 221
Query: 356 GARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDK 415
G +++++GIPF+G ++RL N + +GL A G G G + + + + +
Sbjct: 222 GVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAVD--DGSMTYNRIRDYIVES 279
Query: 416 TW-RHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCG 474
+ + + WI+Y++ ++R K+NY+K R L G W + D G
Sbjct: 280 RATTVYNATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQNWGLSR 339
Query: 475 QKYPLLSAVVSNLQ 488
++
Sbjct: 340 TASQTWGVSFQEMK 353
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 410 bits (1055), Expect = e-130
Identities = 81/390 (20%), Positives = 154/390 (39%), Gaps = 50/390 (12%)
Query: 1142 EFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVI---------KPH 1192
V YF G +D TH+ Y F ++ D+ H
Sbjct: 25 PLMSVGYFNGGGDVTA-GPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHLH 83
Query: 1193 DTWADLDNK-FYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVV 1249
+ W + +K+ AL+K+ +KV L++GGW +S + ++R+ FI
Sbjct: 84 EIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWGAR---GFSGAAATAESRAVFIRSAQ 140
Query: 1250 NFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSP 1309
I ++ DG+DLDWE+P +D+ F L+K LR A L++ AV
Sbjct: 141 KIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVGEQ-KLVTIAVGA 199
Query: 1310 SKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT----FNAN 1365
+ + D+ ++ L++I++MTYD + +Y + T ++A+
Sbjct: 200 NAESPKSWVDVKAVAPVLNYINLMTYDMAYGT---QYFNSNLYDSSHWPTVAAADKYSAD 256
Query: 1366 YSLHYWVSHGADRKKVIFGMPMYG----------QSFTLADKNKNGLNSQTYG------G 1409
+ ++ +++ G ++ G+ YG +T AD N + +G
Sbjct: 257 FVVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALF 316
Query: 1410 AEAGENTRARGFLAYYEICDKIQ---KDGWVVVRDRKRRIGPYAFKGDQ------WVGFD 1460
A G + ++ Y +I K+ + + D + + P+ + ++
Sbjct: 317 ASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAK-VPWLSVQSAEGKPLFALSYE 375
Query: 1461 DQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ + KA+++K L GAM W DD
Sbjct: 376 NPRSVAIKADYIKAKGLAGAMFWEYGADDQ 405
Score = 327 bits (839), Expect = e-100
Identities = 64/296 (21%), Positives = 125/296 (42%), Gaps = 34/296 (11%)
Query: 748 QYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLII---------KA 798
Q V YF G G + + TH+ Y F ++ ++
Sbjct: 24 QPLMSVGYFNGGGDVTAGPGGD-IDKLDVRQITHLNYSFGLIYNDEKDETNAALKDPAHL 82
Query: 799 HDSWADFDNR-FYERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHV 855
H+ W + +++ L+K+ +KV L++GGW +S +A +R FI
Sbjct: 83 HEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWGAR---GFSGAAATAESRAVFIRSA 139
Query: 856 VKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVS 915
K + +Y DG+DLDWE+P A +D+++F ++ L +A L++ AV
Sbjct: 140 QKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVGEQ-KLVTIAVG 198
Query: 916 PSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFF----YFNA 971
+ + + DVKA++ L++I++MTYD + LY+ ++A
Sbjct: 199 ANAESPKSWVDVKAVAPVLNYINLMTYDMAYGT---QYFNSNLYDSSHWPTVAAADKYSA 255
Query: 972 NFTMNYWMKKGAPSRKLVMGMPMYG----------QAFSLANSNDHGLNAAAPGAG 1017
+F +N ++ G ++ +G+ YG ++ A++ ++ + G
Sbjct: 256 DFVVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQ 311
Score = 226 bits (579), Expect = 3e-65
Identities = 81/419 (19%), Positives = 145/419 (34%), Gaps = 71/419 (16%)
Query: 118 QQPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDP-----VSRALIP 172
V Y P ++ + + TH+ Y++ I + AL
Sbjct: 20 ALSAQPLMSVGYFNGGGDVTAGPG-GDIDKLDVRQITHLNYSFGLIYNDEKDETNAALKD 78
Query: 173 EDLEYDV-----IKGGYKSFLGLKEANPELKVYLAV----KSNFVSITSDRESRLNFISS 223
+++ ++ + L++ NP+LKV L+V F + ESR FI S
Sbjct: 79 PAHLHEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRS 138
Query: 224 VLEMFDMYKFDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQ 280
++ Y DG+DL D P S +R +F+ ++ L +
Sbjct: 139 AQKIIQQYGLDGIDL---DWEFPVNGAWGLV--ASQPADRDNFTALLKSLREAVGEQ-KL 192
Query: 281 LTLTSPGVIDRKTSLVDISVVAPLVDLILL------KSFNNDHMDDEVVPVKPNTKVNIQ 334
+T+ + S VD+ VAP+++ I L + +
Sbjct: 193 VTIAVGANAESPKSWVDVKAVAPVLNYINLMTYDMAYGTQYFNS--------NLYDSSHW 244
Query: 335 VTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFG----------KSYRLFNRSEYGLG 384
T A+ + + V N++ G +P Q+ +GI F+G + + +
Sbjct: 245 PTVAAADKYSADFVVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVT 304
Query: 385 ATVKGPGTE------GKYTQMPGYLAFFEVCNKFKDKTW----RHFTDSNGEPFMV---- 430
GP G Y+ + ++ K + H+ D P++
Sbjct: 305 QPYFGPQQIALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSA 364
Query: 431 --KKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNL 487
K ++YEN S+ K +YIK + L GAM W DD L + +L
Sbjct: 365 EGKPLFALSYENPRSVAIKADYIKAKGLAGAMFWEYGADDQNQ-------LARQLAESL 416
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 402 bits (1034), Expect = e-127
Identities = 102/417 (24%), Positives = 172/417 (41%), Gaps = 68/417 (16%)
Query: 1132 KPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV--- 1188
+P + +KIV Y+ +WA Y Y +DID TH+ Y FA + + +
Sbjct: 2 QPATAEAADS-YKIVGYYPSWAAYG---RNYNVADIDPTKVTHINYAFADICWNGIHGNP 57
Query: 1189 --------------------------IKPHDTWADLDNKF------------YEKVTALK 1210
I D W D F ++ LK
Sbjct: 58 DPSGPNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLK 117
Query: 1211 KK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPK 1268
+ +K +++GGW S ++S + + R F V+F+ ++NFDG+DLDWEYP
Sbjct: 118 QTNPNLKTIISVGGWTWSN--RFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPV 175
Query: 1269 CWQVDCKQGPASDKQGFADLIKELRAAFNPH------DLLLSAAVSPSKAVIDNAYDIPV 1322
+D DKQ + L+ ++R + LL+ A + A ++
Sbjct: 176 SGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIAS-GASATYAANTELAK 234
Query: 1323 MSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPT------FNANYSLHYWVSHGA 1376
++ +DWI++MTYD++G W K + H AP+ P + FN + G
Sbjct: 235 IAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGV 294
Query: 1377 DRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDK-IQKDG 1435
K++ G+P YG+ + + NG GG+ G T G +Y++ I K+G
Sbjct: 295 PAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKNG 352
Query: 1436 WVVVRDRKRRIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ + + PY + +++ +DD + +K ++K LGGAM W L D
Sbjct: 353 YTRYWNDTAK-VPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRN 408
Score = 315 bits (810), Expect = 3e-96
Identities = 86/358 (24%), Positives = 140/358 (39%), Gaps = 76/358 (21%)
Query: 743 KSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLI------- 795
+ +KIV Y+ +WA Y Y DI THI Y FA + +
Sbjct: 5 TAEAADSYKIVGYYPSWAAYGR---NYNVADIDPTKVTHINYAFADICWNGIHGNPDPSG 61
Query: 796 ----------------------IKAHDSWADFDNRF------------YERVVTLKKK-- 819
I D W D F ++ LK+
Sbjct: 62 PNPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNP 121
Query: 820 GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV 879
+K +++GGW S ++S + +A R+ F V FL KY FDG+DLDWEYP +
Sbjct: 122 NLKTIISVGGWTWS--NRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGL 179
Query: 880 NCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVINAAYDVKALSES 933
+ ++ DK+++ L + ++ + G LL+ A + A ++ ++
Sbjct: 180 DGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIAS-GASATYAANTELAKIAAI 238
Query: 934 LDWISVMTYDYHGQWDKKTGHVAPLYEHPDD------DFFYFNANFTMNYWMKKGAPSRK 987
+DWI++MTYD++G W K + H APL P D FN + G P+ K
Sbjct: 239 VDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAAK 298
Query: 988 LVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYK 1045
LV+G+P YG+ + +G G G +E+ + ++
Sbjct: 299 LVLGVPFYGRGWDGCAQAGNGQYQTCTGG---------------SSVGTWEAGSFDFY 341
Score = 203 bits (518), Expect = 4e-57
Identities = 79/432 (18%), Positives = 161/432 (37%), Gaps = 82/432 (18%)
Query: 119 QPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI------- 171
+ +++V Y + +AY +NV ++ P TH+ YA+A I
Sbjct: 7 EAADSYKIVGYYPSWAAYGRN---YNVADIDPTKVTHINYAFADICWNGIHGNPDPSGPN 63
Query: 172 ----------------------------------PEDLEYDVIKGGYKSFLGLKEANPEL 197
D I G LK+ NP L
Sbjct: 64 PVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPNL 123
Query: 198 KVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKD---PALNDED 249
K ++V + F + + +R F +S ++ Y FDG+DL D P D
Sbjct: 124 KTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDL---DWEYPVSGGLD 180
Query: 250 DDDLESIANERSDFSTFIQELSSTLRR------NNYQLTLTSPGVIDRKTSLVDISVVAP 303
+ ++ +++ + ++ L Y LT+ S + +++ +A
Sbjct: 181 GN--SKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASAT-YAANTELAKIAA 237
Query: 304 LVDLILLKSF----NNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARP 359
+VD I + ++ + P+ + + F N+ + + G
Sbjct: 238 IVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTF-NVAAGAQGHLDAGVPA 296
Query: 360 EQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKT-WR 418
++++G+PF+G+ + ++ G T G + G T G F+++ + +K +
Sbjct: 297 AKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKNGYT 354
Query: 419 HFTDSNGE-PFMVK--KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQ 475
+ + + P++ +I+Y++ +S+ K YIK + LGGAM W L D +
Sbjct: 355 RYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDRNKT---- 410
Query: 476 KYPLLSAVVSNL 487
L + + ++L
Sbjct: 411 ---LQNKLKADL 419
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 397 bits (1021), Expect = e-125
Identities = 100/401 (24%), Positives = 168/401 (41%), Gaps = 58/401 (14%)
Query: 1118 PTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIY 1177
+ + T+ S + V YF NWA Y + + P D+ + THV+Y
Sbjct: 21 DAAVMWNRDTSSTDLEARASSGY---RSVVYFVNWAIYGR---NHNPQDLPVERLTHVLY 74
Query: 1178 GFAVLDTDQLVIKPHDTWADLDNKF---------------YEKVTALKKK--GVKVTLAI 1220
FA + + + D+WAD++ + +++ LKK+ +KV L+I
Sbjct: 75 AFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSI 134
Query: 1221 GGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPAS 1280
GGW S ++ ++ R F V + + FDGLD+DWEYP+ Q
Sbjct: 135 GGWTYSP--NFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQ--------- 183
Query: 1281 DKQGFADLIKELRAAFNPH--------DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISV 1332
F L+KE+R A + + LL+ A I + M + LD+ ++
Sbjct: 184 QANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKV-LHLKDMDQQLDFWNL 242
Query: 1333 MTYDYHGQWDKKTGHVAPMYALPNDTTPT-FNANYSLHYWVSHGADRKKVIFGMPMYGQS 1391
M YDY G + +GH A +Y ++ T FN +L + + G K++ GMP+YG+S
Sbjct: 243 MAYDYAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRS 302
Query: 1392 FTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAF 1451
F N +G + Y G G+ + G Y + G + Y++
Sbjct: 303 FA----NTDGPG-KPYNG--VGQGSWENGVWDYKALPQA----GATEHVL-PDIMASYSY 350
Query: 1452 KGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ +D+ + + K+ ++K LGGAM W D
Sbjct: 351 DATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSDKT 391
Score = 318 bits (817), Expect = 5e-97
Identities = 83/315 (26%), Positives = 136/315 (43%), Gaps = 45/315 (14%)
Query: 729 PPTEPTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAV 788
S ++ ++ V YF NWA Y + P+D+ + TH++Y FA
Sbjct: 22 AAVMWNRDTSSTDLEARASSGYRSVVYFVNWAIYGR---NHNPQDLPVERLTHVLYAFAN 78
Query: 789 LDSENLIIKAHDSWADFDNRF---------------YERVVTLKKK--GVKVSLAIGGWN 831
+ E + DSWAD + + +++ LKK+ +KV L+IGGW
Sbjct: 79 VRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWT 138
Query: 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKES 891
S ++ ++ R+ F + VK L FDGLD+DWEYP D
Sbjct: 139 YS--PNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYP---------ENDQQAND 187
Query: 892 FGLFVRELHQAFKPHG--------LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYD 943
F L ++E+ A + LL+ A I +K + + LD+ ++M YD
Sbjct: 188 FVLLLKEVRTALDSYSAANAGGQHFLLTVASPAGPDKIKV-LHLKDMDQQLDFWNLMAYD 246
Query: 944 YHGQWDKKTGHVAPLYEHPDDDF-FYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLA 1002
Y G + +GH A +Y + FN ++ + G P+ K+V+GMP+YG++F+
Sbjct: 247 YAGSFSSLSGHQANVYNDTSNPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANT 306
Query: 1003 NSNDHGLNAAAPGAG 1017
+ G G G
Sbjct: 307 D----GPGKPYNGVG 317
Score = 199 bits (509), Expect = 9e-56
Identities = 83/406 (20%), Positives = 151/406 (37%), Gaps = 76/406 (18%)
Query: 119 QPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYD 178
+ + ++ V Y + Y N +++ + THV+YA+A + P + + D D
Sbjct: 38 RASSGYRSVVYFVNWAIYG---RNHNPQDLPVERLTHVLYAFANVRPETGEVYMTDSWAD 94
Query: 179 V---------------IKGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRL 218
+ + G K LK+ N LKV L++ NF S R
Sbjct: 95 IEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRK 154
Query: 219 NFISSVLEMFDMYKFDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTL- 274
NF + +++ FDGLD+ D P ND+ +DF ++E+ + L
Sbjct: 155 NFAKTAVKLLQDLGFDGLDI---DWEYPE-NDQQ----------ANDFVLLLKEVRTALD 200
Query: 275 -------RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF----NNDHMDDEVV 323
++ LT+ SP D K ++ + + +D L ++ + +
Sbjct: 201 SYSAANAGGQHFLLTVASPAGPD-KIKVLHLKDMDQQLDFWNLMAYDYAGSFSSLSGHQA 259
Query: 324 PVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGL 383
V +T + ++ N ++A+ + G +I++G+P +G+S+ + G
Sbjct: 260 NVYNDTS------NPLSTPFNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTD----GP 309
Query: 384 GATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVK--KDEWITYENN 441
G G G + + G + + H + I+Y+N
Sbjct: 310 GKPYNGVG---QGSWENGVWDYKALPQAGAT---EHVLPDIMASYSYDATNKFLISYDNP 363
Query: 442 DSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNL 487
K YIK LGGAM W D L++ VV+ L
Sbjct: 364 QVANLKSGYIKSLGLGGAMWWDSSSDKT-----GSDSLITTVVNAL 404
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 398 bits (1025), Expect = e-124
Identities = 101/467 (21%), Positives = 169/467 (36%), Gaps = 61/467 (13%)
Query: 1075 TTTTTSTTTTTKRPKPPTTTSTTTTR-PKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
+T +S T K K T V + + P + K
Sbjct: 67 PSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIVVADTDGSHLAPLKEPLLEKN 126
Query: 1134 VIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV----- 1188
+ YF W Y G + I + TH++YGF + +
Sbjct: 127 KPYKQNSG-KVVGSYFVEWGVY---GRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLK 182
Query: 1189 --------------------IKPHDTWADLDNKF-------------YEKVTALKKK--G 1213
+ HD +A L + ++ ALK+
Sbjct: 183 EIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPD 242
Query: 1214 VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQV 1272
+K+ +IGGW S + + + R +F+ V F+ FDG+D+DWE+P
Sbjct: 243 LKILPSIGGWTLS-DPFFF--MGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGA 299
Query: 1273 DCKQGPASDKQGFADLIKELRAAFNPH------DLLLSAAVSPSKAVIDNAYDIPVMSEN 1326
+ G D + + L+KELRA + L++A+S K ID V +
Sbjct: 300 NPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKIDK-VAYNVAQNS 358
Query: 1327 LDWISVMTYDYHGQWD-KKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGM 1385
+D I +M+YD++G +D K GH + A + ++ ++ G K++ G
Sbjct: 359 MDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVNGVNALLAQGVKPGKIVVGT 418
Query: 1386 PMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRR 1445
MYG+ +T + +N + T + T G + Y +I + W D
Sbjct: 419 AMYGRGWTGVNGYQNNIP-FTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAE 477
Query: 1446 IGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
PY FK + FDD + K ++V LGG W +D D+
Sbjct: 478 -APYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADNG 523
Score = 304 bits (781), Expect = 9e-91
Identities = 85/432 (19%), Positives = 148/432 (34%), Gaps = 74/432 (17%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
T T+ +V K+ ++ T + + G + TE V
Sbjct: 47 NGDTGTTAKVLLNGKEAWSGPSTGSSGTANFKVNKGGRYQMQVALCNADGCTASDATEIV 106
Query: 727 WHP----PTEPTTTHISVTEKS-PLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTH 781
P + K + + YF W Y + + I TH
Sbjct: 107 VADTDGSHLAPLKEPLLEKNKPYKQNSGKVVGSYFVEWGVYG---RNFTVDKIPAQNLTH 163
Query: 782 IVYGFAVLDSENLI-------------------------IKAHDSWADFDNRF------- 809
++YGF + N I + HD +A
Sbjct: 164 LLYGFIPICGGNGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWD 223
Query: 810 ------YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLK 861
+ +++ LK+ +K+ +IGGW S + R RF+ V +FL
Sbjct: 224 DPYKGNFGQLMALKQAHPDLKILPSIGGWTLS---DPFFFMGDKVKRDRFVGSVKEFLQT 280
Query: 862 Y-QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG------LLLSAAV 914
+ FDG+D+DWE+P N + G D E++ L ++EL L++A+
Sbjct: 281 WKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAI 340
Query: 915 SPSKQVINAAYDVKALSESLDWISVMTYDYHGQWD-KKTGHVAPLYEHPDDDFFYFNANF 973
S K I+ S+D I +M+YD++G +D K GH L +
Sbjct: 341 SAGKDKID-KVAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAYTTVN 399
Query: 974 TMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGP 1033
+N + +G K+V+G MYG+ ++ N + + G
Sbjct: 400 GVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK------------- 446
Query: 1034 GGNYESTTEEYK 1045
G +E+ +Y+
Sbjct: 447 -GTWENGIVDYR 457
Score = 190 bits (484), Expect = 2e-51
Identities = 83/448 (18%), Positives = 157/448 (35%), Gaps = 99/448 (22%)
Query: 107 LHSPKDNYRFMQQPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPV 166
L P + + V Y Y F V + Q TH++Y + I
Sbjct: 118 LKEPLLEKNKPYKQNSGKVVGSYFVEWGVYG---RNFTVDKIPAQNLTHLLYGFIPICGG 174
Query: 167 SRALIPE-----------------------------DLEY---------DVIKGGYKSFL 188
+ L+ D KG + +
Sbjct: 175 NGINDSLKEIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLM 234
Query: 189 GLKEANPELKVYLAV----KSNFVSITSDRESRLNFISSVLEMFDMYK-FDGLDLNVKD- 242
LK+A+P+LK+ ++ S+ D+ R F+ SV E +K FDG+D+ D
Sbjct: 235 ALKQAHPDLKILPSIGGWTLSDPFFFMGDKVKRDRFVGSVKEFLQTWKFFDGVDI---DW 291
Query: 243 --PALNDEDDDDLESIANERSDFSTFIQELSSTLRRN------NYQLTLTSPGVIDRKTS 294
P + + + + ++EL + L + Y+LT D K
Sbjct: 292 EFPGGKGANPN--LGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKD-KID 348
Query: 295 LVDISVVAPLVDLILLKSFNNDHM--------DDEVV----PVKPNTKVNIQVTSTIANF 342
V +V +D I L M D + + +
Sbjct: 349 KVAYNVAQNSMDHIFL-------MSYDFYGAFDLKNLGHQTALNAPA-------WKPDTA 394
Query: 343 NNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGY 402
+ V + +G +P +I++G +G+ + N + + T G K T G
Sbjct: 395 YTTVNGVNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGP-VKGTWENGI 453
Query: 403 LAFFEVCNKFKDKTWRHFTDSNGE-PFMVKKD--EWITYENNDSIRRKMNYIKDRHLGGA 459
+ + ++ +F W++ D+ E P++ K + IT+++ S++ K Y+ D+ LGG
Sbjct: 454 VDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGL 513
Query: 460 MLWTLDLDDFRGFCGQKYPLLSAVVSNL 487
W +D D+ +L+++ ++L
Sbjct: 514 FSWEIDADNG--------DILNSMNASL 533
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 389 bits (1002), Expect = e-123
Identities = 94/396 (23%), Positives = 158/396 (39%), Gaps = 56/396 (14%)
Query: 1123 KPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL 1182
+ P + YFTNW Y + P+D+ + HV+Y F L
Sbjct: 1 RATPRMEDLASTDLSTRATGSINAVYFTNWGIYG---RNFQPADLQASKILHVLYSFMNL 57
Query: 1183 DTDQLVIKPHDTWADLDNKF---------------YEKVTALKKK--GVKVTLAIGGWND 1225
D V DT+ADL+ + +++ LKK +K+ L+IGGW
Sbjct: 58 RVDGTV-YSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTW 116
Query: 1226 SAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGF 1285
S + +++ R+ F V F+ + FDG+D+DWEYP +D
Sbjct: 117 ST--NFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYP---------ASETDANNM 165
Query: 1286 ADLIKELRAAFNPHD--------LLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDY 1337
L++ +R + + LS A + + + + LD I++M YDY
Sbjct: 166 VLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYN-VLKLAQLGSVLDNINLMAYDY 224
Query: 1338 HGQWDKKTGHVAPMYALPNDTTPT-FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLAD 1396
G WD +GH +Y ++ + T F+ ++ +++ G K+I GMP+YG++F
Sbjct: 225 AGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGT- 283
Query: 1397 KNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAF--KGD 1454
+G + Y GE + G Y + G V+ D Y++
Sbjct: 284 ---DGPG-KPYST--IGEGSWESGIWDYKVLPKA----GATVITDSAAG-ATYSYDSSSR 332
Query: 1455 QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ +D M+ K + K LGG+M W D
Sbjct: 333 TMISYDTPDMVRTKVSYAKGLGLGGSMFWEASADKT 368
Score = 308 bits (791), Expect = 8e-94
Identities = 76/315 (24%), Positives = 133/315 (42%), Gaps = 45/315 (14%)
Query: 733 PTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSE 792
P ++ T+ S YFTNW Y + P D++ H++Y F L +
Sbjct: 4 PRMEDLASTDLSTRATGSINAVYFTNWGIYG---RNFQPADLQASKILHVLYSFMNLRVD 60
Query: 793 NLIIKAHDSWADFDNRF---------------YERVVTLKKK--GVKVSLAIGGWNDSLG 835
+ + D++AD + + +++ LKK +K+ L+IGGW S
Sbjct: 61 G-TVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWS-- 117
Query: 836 GKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLF 895
+ ++ R F + V+F+ + FDG+D+DWEYP ++D + L
Sbjct: 118 TNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYP---------ASETDANNMVLL 168
Query: 896 VRELHQAFKPHG--------LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQ 947
++ + Q + LS A N + L LD I++M YDY G
Sbjct: 169 LQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNV-LKLAQLGSVLDNINLMAYDYAGS 227
Query: 948 WDKKTGHVAPLYEHPDDDF-FYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSND 1006
WD +GH LY + F+ ++ ++ G P+ K+++GMP+YG+AF +
Sbjct: 228 WDSVSGHQTNLYPSTSNPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTDGPG 287
Query: 1007 HGLNAAAPG---AGV 1018
+ G +G+
Sbjct: 288 KPYSTIGEGSWESGI 302
Score = 193 bits (493), Expect = 6e-54
Identities = 74/407 (18%), Positives = 148/407 (36%), Gaps = 77/407 (18%)
Query: 118 QQPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI------ 171
T Y Y F ++ HV+Y++ +
Sbjct: 15 STRATGSINAVYFTNWGIYG---RNFQPADLQASKILHVLYSFMNLRVDGTVYSGDTYAD 71
Query: 172 -----PEDLEYDV---IKGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRL 218
+D D+ G K LK+AN LK+ L++ +NF + S +R
Sbjct: 72 LEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWTWSTNFPAAASTEATRA 131
Query: 219 NFISSVLEMFDMYKFDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTL- 274
F + +E + FDG+D+ D PA ++ D ++ +Q + L
Sbjct: 132 TFAKTAVEFMKDWGFDGIDV---DWEYPA-SETD----------ANNMVLLLQRVRQELD 177
Query: 275 -------RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF----NNDHMDDEVV 323
++QL++ +P +++ ++ + ++D I L ++ + D +
Sbjct: 178 SYSATYANGYHFQLSIAAPAGPS-HYNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQT 236
Query: 324 PVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGL 383
+ P+T + + + ++AV +I G +II+G+P +G+++ + G
Sbjct: 237 NLYPSTS------NPSSTPFSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD----GP 286
Query: 384 GATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGE-PFMV--KKDEWITYEN 440
G G + + G + + TDS + I+Y+
Sbjct: 287 GKPYSTIG---EGSWESGIWDYKVLPKAG----ATVITDSAAGATYSYDSSSRTMISYDT 339
Query: 441 NDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNL 487
D +R K++Y K LGG+M W D L+ +S++
Sbjct: 340 PDMVRTKVSYAKGLGLGGSMFWEASADKT-----GSDSLIGTALSSM 381
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 387 bits (997), Expect = e-122
Identities = 92/376 (24%), Positives = 164/376 (43%), Gaps = 56/376 (14%)
Query: 1143 FKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
F+ V YF NWA Y + + P D+ +D TH++Y FA + V DTWAD D +
Sbjct: 3 FRSVVYFVNWAIYGR---GHNPQDLKADQFTHILYAFANIRPSGEV-YLSDTWADTDKHY 58
Query: 1203 ---------------YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFI 1245
+++ LKK +K L+IGGW S + ++++ R KF
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSP--NFKTPASTEEGRKKFA 116
Query: 1246 AHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH------ 1299
+ + + FDG+D+DW+YP F L+K R A + +
Sbjct: 117 DTSLKLMKDLGFDGIDIDWQYP---------EDEKQANDFVLLLKACREALDAYSAKHPN 167
Query: 1300 --DLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPND 1357
LL+ A + + M + LD+ ++M YD+ G WDK +GH++ ++
Sbjct: 168 GKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTK 226
Query: 1358 TTPT-FNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENT 1416
T F+++ ++ ++ G K++ GMP+YG++F + +G+ ++ G G +
Sbjct: 227 PESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFA----STDGIG-TSFNG--VGGGS 279
Query: 1417 RARGFLAYYEICDKIQKDGWVVVRDRKRRIGPYAFKGDQ--WVGFDDQAMIHHKAEFVKY 1474
G Y ++ + G V Y++ ++ + +D + KAE++
Sbjct: 280 WENGVWDYKDMPQQ----GAQVTELEDIA-ASYSYDKNKRYLISYDTVKIAGKKAEYITK 334
Query: 1475 NDLGGAMIWALDLDDF 1490
N +GG M W D
Sbjct: 335 NGMGGGMWWESSSDKT 350
Score = 308 bits (791), Expect = 4e-94
Identities = 79/294 (26%), Positives = 139/294 (47%), Gaps = 46/294 (15%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRF 809
F+ V YF NWA Y G + P+D++ D THI+Y FA + + D+WAD D +
Sbjct: 3 FRSVVYFVNWAIYGRG---HNPQDLKADQFTHILYAFANIRPSG-EVYLSDTWADTDKHY 58
Query: 810 ---------------YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFI 852
+++ LKK +K L+IGGW S + ++ R++F
Sbjct: 59 PGDKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYS--PNFKTPASTEEGRKKFA 116
Query: 853 EHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG----- 907
+ +K + FDG+D+DW+YP + F L ++ +A +
Sbjct: 117 DTSLKLMKDLGFDGIDIDWQYP---------EDEKQANDFVLLLKACREALDAYSAKHPN 167
Query: 908 ---LLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDD 964
LL+ A Q N + + + LD+ ++M YD+ G WDK +GH++ ++
Sbjct: 168 GKKFLLTIASPAGPQNYNK-LKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTK 226
Query: 965 -DFFYFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
+ F+++ + ++K G P+ K+V+GMP+YG+AF ++ G+ + G G
Sbjct: 227 PESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAF----ASTDGIGTSFNGVG 276
Score = 193 bits (492), Expect = 6e-54
Identities = 75/399 (18%), Positives = 145/399 (36%), Gaps = 75/399 (18%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI------------- 171
+ V Y + Y N +++ TH++YA+A I P +
Sbjct: 4 RSVVYFVNWAIYG---RGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPG 60
Query: 172 -PEDLEYDVIKGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVL 225
D + + G K LK+ N LK L++ NF + S E R F + L
Sbjct: 61 DKWDEPGNNVYGCIKQMYLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSL 120
Query: 226 EMFDMYKFDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTL-------- 274
++ FDG+D+ D P +++ +DF ++ L
Sbjct: 121 KLMKDLGFDGIDI---DWQYPE-DEKQ----------ANDFVLLLKACREALDAYSAKHP 166
Query: 275 RRNNYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSF----NNDHMDDEVVPVKPNTK 330
+ LT+ SP + + ++ + +D L ++ + D + + V P+T
Sbjct: 167 NGKKFLLTIASPAGPQ-NYNKLKLAEMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTT 225
Query: 331 VNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGP 390
+ + + AV ++IK G +I++G+P +G+++ + G+G + G
Sbjct: 226 ------KPESTPFSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTD----GIGTSFNGV 275
Query: 391 GTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKD--EWITYENNDSIRRKM 448
G + G + ++ + + + K+ I+Y+ +K
Sbjct: 276 G---GGSWENGVWDYKDMPQQ---GAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKA 329
Query: 449 NYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNL 487
YI +GG M W D L+ VV+ L
Sbjct: 330 EYITKNGMGGGMWWESSSDKTGN-----ESLVGTVVNGL 363
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 374 bits (961), Expect = e-117
Identities = 96/421 (22%), Positives = 161/421 (38%), Gaps = 80/421 (19%)
Query: 1137 PSTKDEFKIVCYFTNWAWY-RQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV------- 1188
ST + ++ V YF W Y R K L + TH+ Y F ++ L
Sbjct: 3 TSTVNGYRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKA 62
Query: 1189 --------IKPHDTWADLDNKF--------------------YEKVTALKKK--GVKVTL 1218
D WAD + + ++ LK K +KV +
Sbjct: 63 QGTGPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMI 122
Query: 1219 AIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHN----------------FDGLDL 1262
++GGW S +S+ ++ +R K ++ ++ ++ N FDG+D+
Sbjct: 123 SLGGWTWS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDI 180
Query: 1263 DWEYPKCWQVDCKQG--PASDKQGFADLIKELRAAFNPH------DLLLSAAVSPSKAVI 1314
DWE+P G +D+ F L+ E R + + +LSA + + A I
Sbjct: 181 DWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240
Query: 1315 DNA-YDIPVMSENLDWISVMTYDYHGQWDKK-TGHVAPMYALPNDTTPT---FNANYSLH 1369
D +D P ++LD+ S+ YD HG W+ TGH A +Y P D F+A+ ++
Sbjct: 241 DAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVK 300
Query: 1370 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICD 1429
+++ G D K++ G+ YG+ +T A G T Y ++
Sbjct: 301 KYLAAGIDPKQLGLGLAAYGRGWTGAKNVSPW---GPATDGAPG--TYETANEDYDKLK- 354
Query: 1430 KIQKDGWVVVRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDD 1489
D + + G QW +D+ A K +++ LGG M W L D
Sbjct: 355 ----TLGTDHYDAATG-SAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGDR 409
Query: 1490 F 1490
Sbjct: 410 N 410
Score = 296 bits (759), Expect = 4e-89
Identities = 80/335 (23%), Positives = 137/335 (40%), Gaps = 69/335 (20%)
Query: 750 FKIVCYFTNWAWY-RPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLI------------- 795
++ V YF W Y R + K + THI Y F ++++ L
Sbjct: 9 YRNVGYFAQWGVYGRAFQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMANKAQGTGPN 68
Query: 796 --IKAHDSWADFDNRF--------------------YERVVTLKKK--GVKVSLAIGGWN 831
A D+WADF + + ++ LK K +KV +++GGW
Sbjct: 69 GSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKVMISLGGWT 128
Query: 832 DSLGGKYSRLVNSATARQRFIEHVVKFLLKY----------------QFDGLDLDWEYPT 875
S +S+ + +RQ+ + + +K FDG+D+DWE+P
Sbjct: 129 WS--KNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPG 186
Query: 876 CWQVNCDAGPDS--DKESFGLFVRELHQAFKPHG------LLLSAAVSPSKQVINAA-YD 926
G D+ D+ +F + E + +G +LSA + + I+A +D
Sbjct: 187 TNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADIDAGGWD 246
Query: 927 VKALSESLDWISVMTYDYHGQWDKK-TGHVAPLYEHPDD---DFFYFNANFTMNYWMKKG 982
A +SLD+ S+ YD HG W+ TGH A LY+ P D F+A+ + ++ G
Sbjct: 247 DPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAG 306
Query: 983 APSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAG 1017
++L +G+ YG+ ++ A + A G
Sbjct: 307 IDPKQLGLGLAAYGRGWTGAKNVSPWGPATDGAPG 341
Score = 185 bits (471), Expect = 9e-51
Identities = 72/453 (15%), Positives = 138/453 (30%), Gaps = 98/453 (21%)
Query: 119 QPGTKHQVVCYVEAKSAYRHRPATFNVKNVI----PQICTHVIYAYAAIDPVSRALIP-- 172
++ V Y Y R F K + + TH+ Y++ I+ +
Sbjct: 4 STVNGYRNVGYFAQWGVYG-RA--FQAKQLDVSGTAKNLTHINYSFGNINNQTLTCFMAN 60
Query: 173 ---------------------------------EDLEYDVIKGGYKSFLGLKEANPELKV 199
D + G + LK NP+LKV
Sbjct: 61 KAQGTGPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKV 120
Query: 200 YLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYK----------------FDGLDL 238
+++ NF + SR +SS ++++ FDG+D+
Sbjct: 121 MISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDI 180
Query: 239 NVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTL----RRNNYQLTLTS-----P 286
D P N + N+R++F + E L NN + L++ P
Sbjct: 181 ---DWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANP 237
Query: 287 GVIDRKTSLVDISVVAPLVDLILLKSFN-----NDHMDDEVVPVKPNTKVNIQVTSTIAN 341
ID D +D ++ ++ N + + + +
Sbjct: 238 ADID-AGGW-DDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPAD----PRAPSK 291
Query: 342 FNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPG 401
+ + AV ++ G P+Q+ +G+ +G+ + T
Sbjct: 292 KFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWT--GAKNVSPWGPATDGA---PGTYETA 346
Query: 402 YLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAML 461
+ ++ H+ + G + +W +Y+N + ++K +YI + LGG M
Sbjct: 347 NEDYDKLKTLG----TDHYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMW 402
Query: 462 WTLDLDDFRGFCGQKYPLLSAVVSNLQPDMETP 494
W L D G A + P
Sbjct: 403 WELSGDRNGELVGAMSDKFRAAAPGPVTEAAPP 435
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 374 bits (963), Expect = e-116
Identities = 84/419 (20%), Positives = 157/419 (37%), Gaps = 80/419 (19%)
Query: 1141 DEFKIVCYF-------TNWAWYRQSGGKYLPSDIDS---DLCTHVIYGFAVLDTDQLVIK 1190
++ Y+ N+ S + S+I TH+ + F ++++
Sbjct: 3 TRKAVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAW 62
Query: 1191 PHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDS-----AGNKYSRLVNSQQARSK 1243
T ++TALK +++ +IGGW S + Y V + +R+K
Sbjct: 63 DPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAK 122
Query: 1244 FIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPH---- 1299
F V + ++ FDG+++DWEYP+ A++ GF ++E+R N
Sbjct: 123 FAQSCVRIMKDYGFDGVNIDWEYPQ----------AAEVDGFIAALQEIRTLLNQQTITD 172
Query: 1300 -----DLLLSAAVSPSKAVIDNAY-DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYA 1353
L+ A + + Y + + LD+I++MTYD G W+K T H A ++
Sbjct: 173 GRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFG 232
Query: 1354 LPNDTTPT------------------------FNANYSL-HYWVSHGADRKKVIFGMPMY 1388
T + ++ + + G K++ G+P Y
Sbjct: 233 DAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFY 292
Query: 1389 GQSFTLADKNKNGLNSQTYGGAEA--------------GENTRARGFLAYYEICDKIQKD 1434
G++F G S E + +Y ++ +Q +
Sbjct: 293 GRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGN 352
Query: 1435 -GWVVVRDRKRRIGPYAFKGD--QWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
G+ + + K + PY + +V +DD +KA+++K LGG M W L D+
Sbjct: 353 YGYQRLWNDKTK-TPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNR 410
Score = 300 bits (769), Expect = 1e-89
Identities = 70/348 (20%), Positives = 128/348 (36%), Gaps = 63/348 (18%)
Query: 751 KIVCYF-------TNWAWYRPGKGKYVPEDIRT---DLCTHIVYGFAVLDSENLIIKAHD 800
++ Y+ N+ + +I THI + F ++S
Sbjct: 6 AVIGYYFIPTNQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPA 65
Query: 801 SWADFDNRFYERVVTLKKK--GVKVSLAIGGWNDS-----LGGKYSRLVNSATARQRFIE 853
+ R+ LK +++ +IGGW S Y V + +R +F +
Sbjct: 66 TNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQ 125
Query: 854 HVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGL----- 908
V+ + Y FDG+++DWEYP ++ + F ++E+ +
Sbjct: 126 SCVRIMKDYGFDGVNIDWEYPQ----------AAEVDGFIAALQEIRTLLNQQTITDGRQ 175
Query: 909 ----LLSAAVSPSKQVINAAY-DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPD 963
L+ A + ++ Y + + LD+I++MTYD G W+K T H A L+
Sbjct: 176 ALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAA 235
Query: 964 D------------------------DFFYFNANFTMN-YWMKKGAPSRKLVMGMPMYGQA 998
F + + + M +G PS K+VMG+P YG+A
Sbjct: 236 GPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRA 295
Query: 999 FSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPG-GNYESTTEEYK 1045
F + + G ++ G P ST ++G + + Y+
Sbjct: 296 FKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYR 343
Score = 208 bits (531), Expect = 5e-58
Identities = 73/497 (14%), Positives = 156/497 (31%), Gaps = 104/497 (20%)
Query: 128 CYVEAKSAYRHRPATFNVKNVIP---QICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
+ + F V N+ P + TH+ +++ I+ +
Sbjct: 16 NQINNYTETDTSVVPFPVSNITPAKAKQLTHINFSFLDINSNLECAWDPATNDAKARDVV 75
Query: 185 KSFLGLKEANPELKVYLAV------------KSNFVSITSDRESRLNFISSVLEMFDMYK 232
LK NP L++ ++ +N+V+ SR F S + + Y
Sbjct: 76 NRLTALKAHNPSLRIMFSIGGWYYSNDLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYG 135
Query: 233 FDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTL---------RRNNYQ 280
FDG+++ D P A E F +QE+ + L + YQ
Sbjct: 136 FDGVNI---DWEYPQ------------AAEVDGFIAALQEIRTLLNQQTITDGRQALPYQ 180
Query: 281 LTLTSPGVIDR-KTSLVDISVVAPLVDLILL---------------------KSFNNDHM 318
LT+ G ++ + +D I L +
Sbjct: 181 LTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFY 240
Query: 319 DDEVVPVKPNTKVNIQVTSTIANFNNIESAV-YNWIKKGARPEQIIIGIPFFGKSYRLFN 377
+ + + +++AV + + +G +I++G+PF+G++++ +
Sbjct: 241 NALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVS 300
Query: 378 RSEYGLGATVKGPGT--------------EGKYTQMPGYLAFFEVCNKFK-DKTWRHFTD 422
G ++ PG E + P ++ ++ + + ++ +
Sbjct: 301 GGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWN 360
Query: 423 SNGE-PFMVK--KDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPL 479
+ P++ ++TY++ +S + K YIK + LGG M W L D+ G L
Sbjct: 361 DKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDNRNG------DL 414
Query: 480 LSAVVSNLQPDMETPMKSTTESQSQELELVEDELTTIRTQRPTRPA-------------- 525
L+A+ + + + + L +
Sbjct: 415 LAALDRYFNAADYDDSQLDMGTGLRYTGVGPGNLPIMTAPAYVPGTTYAQGALVSYQGYV 474
Query: 526 -TSSWWTPITTTESTQE 541
+ W + S
Sbjct: 475 WQTKWGYITSAPGSDSA 491
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 370 bits (952), Expect = e-114
Identities = 98/514 (19%), Positives = 161/514 (31%), Gaps = 61/514 (11%)
Query: 1027 EVLGHGPGGNYESTTEE---YKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTT 1083
E L G E + Y E EP + T T
Sbjct: 23 ENLYFQGSGAMEKEEKSNLIYDKDPGYVWDNKNECEGAAEETYQELNYEPSISADKLTWT 82
Query: 1084 TTKRPKPPTTTSTTTTRPK------------PITTIKPKPTTVKPKPTTTVKPKPTTVK- 1130
T+ K T P K T P
Sbjct: 83 PTRLAKTVFNTYEDDDDFNVLCYFTDWSQYDPRIINKEIRDTGGRSADILRLNTPDGRPF 142
Query: 1131 -------------PKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIY 1177
K + ++ GK +P D D + +
Sbjct: 143 KRLIYSFGGLIGDKKYSADGNASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINC 202
Query: 1178 GFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLV 1235
GF + + L + ++ +L+IGGW+ S +S +
Sbjct: 203 GFTKWEAGDANE---RYNQEKAKGLLGGFRLLHEADKELEFSLSIGGWSMS--GLFSEIA 257
Query: 1236 NSQQARSKFIAHVVNFILEHN-FDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRA 1294
+ R+ F+ + +F F LD+DWEYP P D FA LI+++
Sbjct: 258 KDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPD-DGANFAILIQQITD 316
Query: 1295 AFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYAL 1354
A + +S A S A ID A +M + I++MTYD+ D K H +Y
Sbjct: 317 AKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDFFTLGDGKLSHHTNIYRD 376
Query: 1355 PNDTTPTFNANYSLHYWV-SHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAG 1413
P+D ++ + ++ + + D K + G Y ++ A + A G
Sbjct: 377 PSDVYSKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSI----PSEEALKG 432
Query: 1414 ENTRARGFLAYYE---------ICDKIQ------KDGWVVVRDRKRRIGPYAF--KGDQW 1456
T A L +E IC + ++G+ +V D+ + Y + +
Sbjct: 433 TYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAK-ADYLYSEATKVF 491
Query: 1457 VGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ D + K +VK LGG IW+ D D+
Sbjct: 492 ISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDNG 525
Score = 299 bits (768), Expect = 1e-88
Identities = 74/417 (17%), Positives = 141/417 (33%), Gaps = 44/417 (10%)
Query: 658 WPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTT--TEYNPPEATTKPSTTT------ 709
W + +C+ + T E +P+ K T PT T +N E +
Sbjct: 51 WDNKNECEGAAEETYQELNYEPSISADKLTWTPTRLAKTVFNTYEDDDDFNVLCYFTDWS 110
Query: 710 -----STTTDSGAWTPNPTEWVWHPPTEPTT-THI-----------SVTEKSPLDQYFKI 752
+ + + + + + ++
Sbjct: 111 QYDPRIINKEIRDTGGRSADILRLNTPDGRPFKRLIYSFGGLIGDKKYSADGNASIAVRL 170
Query: 753 VCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYER 812
KGK +P D + I GF ++ + +
Sbjct: 171 GVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGDANE---RYNQEKAKGLLGG 227
Query: 813 VVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY-QFDGLDL 869
L + ++ SL+IGGW+ S G +S + R F+E + F ++ F LD+
Sbjct: 228 FRLLHEADKELEFSLSIGGWSMS--GLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDI 285
Query: 870 DWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKA 929
DWEYP PD D +F + ++++ A + +S A S I+AA
Sbjct: 286 DWEYPGSIGAGNPNSPD-DGANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPAL 344
Query: 930 LSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMK-KGAPSRKL 988
+ + I++MTYD+ D K H +Y P D + ++ + + + + K + +
Sbjct: 345 MDAGVTGINLMTYDFFTLGDGKLSHHTNIYRDPSDVYSKYSIDDAVTHLIDEKKVDPKAI 404
Query: 989 VMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYK 1045
+G Y + A + A T T+ + G++E + E+
Sbjct: 405 FIGYAGYTRNAKNATITTSIPSEEALKG-------TYTD--ANQTLGSFEYSVLEWT 452
Score = 196 bits (500), Expect = 2e-53
Identities = 67/429 (15%), Positives = 145/429 (33%), Gaps = 62/429 (14%)
Query: 119 QPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYD 178
++ + A + + + + + + E +
Sbjct: 163 NASIAVRLGVATDPDDAIANHKGKTIPVDPDGAVLASINCGFTKWEAGD---ANERYNQE 219
Query: 179 VIKGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYK- 232
KG F L EA+ EL+ L++ F I D R NF+ + + F +
Sbjct: 220 KAKGLLGGFRLLHEADKELEFSLSIGGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPM 279
Query: 233 FDGLDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVI 289
F LD+ D P + + ++ ++F+ IQ+++ N +++ S
Sbjct: 280 FSHLDI---DWEYPGSIGAGNP---NSPDDGANFAILIQQITDAKISNLKGISIASSADP 333
Query: 290 DRKTSLVDISVVAPLVDLILL------KSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFN 343
+ + +++ V I L + + +T + + + ++
Sbjct: 334 AKIDAANIPALMDAGVTGINLMTYDFFTLGDG--------KLSHHTNIYRDPSDVYSKYS 385
Query: 344 NIESAVYNWIK-KGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGY 402
I+ AV + I K P+ I IG + ++ + + +G YT
Sbjct: 386 -IDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKNATITTSIPS----EEALKGTYTDANQT 440
Query: 403 LAFFE---------VCNKFKDKT------WRHFTDSNGE-PFMV--KKDEWITYENNDSI 444
L FE +C+ + ++ D + ++ +I+ + S+
Sbjct: 441 LGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSV 500
Query: 445 RRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNLQP------DMETPMKST 498
R K Y+KD+ LGG +W+ D D+ L + + + D + + +
Sbjct: 501 RDKGRYVKDKGLGGLFIWSGDQDNGILTNAAHEGLKRRIKNKVIDMTPFYLDSDEELPTY 560
Query: 499 TESQSQELE 507
TE + E
Sbjct: 561 TEPAEPQCE 569
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 366 bits (941), Expect = e-112
Identities = 99/496 (19%), Positives = 168/496 (33%), Gaps = 90/496 (18%)
Query: 1076 TTTTSTTTTTKRPKPPTTTSTTT--TRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
T S TT + + P T+ + +KP V P
Sbjct: 70 AITGSQTTASFEYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLKPLTMNVDPNN 129
Query: 1134 VIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKP-- 1191
+ + YF W Y G Y ++ D TH++YGF + +K
Sbjct: 130 KSYNTDPS-IVMGTYFVEWGIY---GRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVG 185
Query: 1192 ---------------------HDTWADLDNKF--------------YEKVTALKKK--GV 1214
HD WA F Y + ALK++ +
Sbjct: 186 GNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDL 245
Query: 1215 KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNF-DGLDLDWEYPKCWQVD 1273
K+ +IGGW S Y ++ R F+A V F+ F DG+D+DWE+P
Sbjct: 246 KIIPSIGGWTLS-DPFYD--FVDKKNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAA 302
Query: 1274 CKQG-PASDKQGFADLIKELRAAFNPH------DLLLSAAVSPSKAVIDNAYDIPVMSEN 1326
+G P +D + L++ELR + L++A+ I++ D +
Sbjct: 303 ADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGYDKIED-VDYADAVQY 361
Query: 1327 LDWISVMTYDYHGQWDKKTGHVAPMYALPND-----------------TTPTFNANYSLH 1369
+D+I MTYD++G W+ GH +Y P + A+ +
Sbjct: 362 MDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQ 421
Query: 1370 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGA-------EAGENTRARGFL 1422
++ G K++ G MYG+ + + + G + G +
Sbjct: 422 LLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVI 481
Query: 1423 AYYEICDKIQ------KDGWVVVRDRKRRIGPYAFKGD--QWVGFDDQAMIHHKAEFVKY 1474
Y I + +G+ D + P+ + + + FDD + K + K
Sbjct: 482 DYKGIKSFMLGANNTGINGFEYGYDAQAE-APWVWNRSTGELITFDDHRSVLAKGNYAKS 540
Query: 1475 NDLGGAMIWALDLDDF 1490
L G W +D D+
Sbjct: 541 LGLAGLFSWEIDADNG 556
Score = 286 bits (734), Expect = 6e-84
Identities = 93/445 (20%), Positives = 148/445 (33%), Gaps = 89/445 (20%)
Query: 666 QTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEW 725
AT E +K + T D+ P
Sbjct: 64 VKVATGAITGSQTTASFEYGQGGLYQMEIEACDATGCSKSAPVEITIADTDGSHLKPLTM 123
Query: 726 VWHPPTEPTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYG 785
P + T D + YF W Y Y +++ D THI+YG
Sbjct: 124 NVDPNNKSYNT----------DPSIVMGTYFVEWGIYGR---DYTVDNMPVDNLTHILYG 170
Query: 786 FAVLDSENLIIKA-----------------------HDSWADFDNRF------------- 809
F + N +K+ HD WA + F
Sbjct: 171 FIPICGPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIKG 230
Query: 810 -YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQF-D 865
Y ++ LK++ +K+ +IGGW S + V+ R F+ V KFL ++F D
Sbjct: 231 NYAMLMALKQRNPDLKIIPSIGGWTLS--DPFYDFVDKK-NRDTFVASVKKFLKTWKFYD 287
Query: 866 GLDLDWEYPTCWQVNCDAG-PDSDKESFGLFVRELHQAFKPHG------LLLSAAVSPSK 918
G+D+DWE+P D G P +D ++ +REL L++A+
Sbjct: 288 GVDIDWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIGVGY 347
Query: 919 QVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFF----------- 967
I D + +D+I MTYD++G W+ GH LY
Sbjct: 348 DKIED-VDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENG 406
Query: 968 ------YFNANFTMNYWMKKGAPSRKLVMGMPMYGQAFSLANSND-HGLNAAAPGAGVHP 1020
+ A+ + + +G P+ KLV+G MYG+ + + N G
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGK 466
Query: 1021 LLSTITEVLGHGPGGNYESTTEEYK 1045
L + + G +E +YK
Sbjct: 467 LKGSTAQ-------GVWEDGVIDYK 484
Score = 169 bits (430), Expect = 3e-44
Identities = 76/481 (15%), Positives = 150/481 (31%), Gaps = 106/481 (22%)
Query: 99 DAVERRPILHSPKDNYRFMQQPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIY 158
D +P+ + N + + Y Y + V N+ TH++Y
Sbjct: 114 DGSHLKPLTMNVDPNNKSYN-TDPSIVMGTYFVEWGIYG---RDYTVDNMPVDNLTHILY 169
Query: 159 AYAAIDPVSRALIPE---------------------------DLEYDV----------IK 181
+ I + ++ + IK
Sbjct: 170 GFIPICGPNESVKSVGGNSFNALQTACRGVNDYEVVIHDPWAAYQKSFPQAGHEYSTPIK 229
Query: 182 GGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKF-DG 235
G Y + LK+ NP+LK+ ++ F ++R F++SV + +KF DG
Sbjct: 230 GNYAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDK-KNRDTFVASVKKFLKTWKFYDG 288
Query: 236 LDLNVKD---PALNDEDDDDLESIANERSDFSTFIQELSSTLRR------NNYQLTLTSP 286
+D+ D P D N+ + ++EL L Y+LT
Sbjct: 289 VDI---DWEFPG-GGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAIG 344
Query: 287 GVIDRKTSLVDISVVAPLVDLILLKS-----------------FNNDHMDDEVVPVKPNT 329
D K VD + +D I + + M
Sbjct: 345 VGYD-KIEDVDYADAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVD 403
Query: 330 KVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLG----- 384
+ ++ + + +G ++++G +G+ +
Sbjct: 404 ENGEPYKGP---AYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMT 460
Query: 385 --ATVKGPGTEGKYTQMPGYLAFFEVCNKFKDK------TWRHFTDSNGE-PFMVKKD-- 433
AT K G+ + G + + + + + + D+ E P++ +
Sbjct: 461 GTATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTG 520
Query: 434 EWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLLSAVVSNLQPDMET 493
E IT++++ S+ K NY K L G W +D D+ +L+A+ + + T
Sbjct: 521 ELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADNG--------DILNAMHEGMAGGVVT 572
Query: 494 P 494
P
Sbjct: 573 P 573
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 318 bits (816), Expect = 1e-98
Identities = 62/350 (17%), Positives = 120/350 (34%), Gaps = 71/350 (20%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
++ Y W + L I+ TH+ FA + D + + +
Sbjct: 5 VVIGYLALDDWEF----ESLFPTIEWKYLTHINASFARVKADGTL-----NINPVRKRIE 55
Query: 1204 EKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD 1263
K VK+ +++ + +++ +N +AR + I ++ F E+ DG D+D
Sbjct: 56 SVRETAHKHNVKILISLAKNSPG---EFTTAINDPKARKELIQQIIAFTKEYKLDGFDID 112
Query: 1264 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN--PHDLLLSAAVSPSKAVIDNAYDIP 1321
+E + F L+ R + ++L++ AV+ ++
Sbjct: 113 YEEYDN-----------WDKNFPSLLVFARGLYLAKEKNMLMTCAVNSRWLNYGTEWE-- 159
Query: 1322 VMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSH-GADRKK 1380
+ D+I++M+YD DK H + L YW A + K
Sbjct: 160 ---QYFDYINLMSYDRGAFTDKPVQH-----------ASYDDFVKDLKYWNEQCRASKSK 205
Query: 1381 VIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVR 1440
++ G+P YG S+ + + G + + Y I + +
Sbjct: 206 IVGGLPFYGYSWEESLQ----------GAVDDV------RGIRYSGILKHLGNEAAD--- 246
Query: 1441 DRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
++ + I +K +F+K ND G MIW L D
Sbjct: 247 ----------KDNIGKTYYNGRPTIANKCKFIKENDYAGVMIWQLFQDAH 286
Score = 262 bits (671), Expect = 6e-79
Identities = 51/271 (18%), Positives = 102/271 (37%), Gaps = 47/271 (17%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
++ Y W + I THI FA + ++ + + R
Sbjct: 5 VVIGYLALDDWEFE----SLFPTIEWKYLTHINASFARVKADGTL-----NINPVRKRIE 55
Query: 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLD 870
T K VK+ +++ + G+++ +N AR+ I+ ++ F +Y+ DG D+D
Sbjct: 56 SVRETAHKHNVKILISLAKNS---PGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDID 112
Query: 871 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAF--KPHGLLLSAAVSPSKQVINAAYDVK 928
+E D+ ++F + + K +L++ AV+ ++
Sbjct: 113 YEE-----------YDNWDKNFPSLLVFARGLYLAKEKNMLMTCAVNSRWLNYGTEWE-- 159
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWM-KKGAPSRK 987
+ D+I++M+YD DK H + Y + + YW + A K
Sbjct: 160 ---QYFDYINLMSYDRGAFTDKPVQHAS-----------YDDFVKDLKYWNEQCRASKSK 205
Query: 988 LVMGMPMYGQAFSLANSNDHGLNAAAPGAGV 1018
+V G+P YG ++ + A G+
Sbjct: 206 IVGGLPFYGYSWEESLQ-----GAVDDVRGI 231
Score = 181 bits (462), Expect = 7e-51
Identities = 51/367 (13%), Positives = 106/367 (28%), Gaps = 75/367 (20%)
Query: 126 VVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYK 185
V+ Y+ + + TH+ ++A + L + +
Sbjct: 6 VIGYLALDDWEFESL----FPTIEWKYLTHINASFARVKA-DGTLNINPVRKRI------ 54
Query: 186 SFLGLKEANPELKVYLAV----KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
+ +K+ +++ F + +D ++R I ++ YK DG D+
Sbjct: 55 ESVRETAHKHNVKILISLAKNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDI--- 111
Query: 242 DPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVV 301
D E N +F + + + +T +
Sbjct: 112 ----------DYEEYDNWDKNFPSLLVFARGLYLAKEKNMLMTCAVNSRWLNYGTEW--- 158
Query: 302 APLVDLILLKSFNND-HMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPE 360
D I L S+ D + + + + ++ Y + A
Sbjct: 159 EQYFDYINLMSY--DRGAFTD--KPVQHA----------SYDDFVKDLKYWNEQCRASKS 204
Query: 361 QIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHF 420
+I+ G+PF+G S+ +++G + + + G L KD
Sbjct: 205 KIVGGLPFYGYSWEE----------SLQGAVDDVRGIRYSGILKHLGNEAADKDNIG--- 251
Query: 421 TDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFCGQKYPLL 480
Y +I K +IK+ G M+W L D L+
Sbjct: 252 --------------KTYYNGRPTIANKCKFIKENDYAGVMIWQLFQDAHNDNY--DLKLI 295
Query: 481 SAVVSNL 487
+ V +
Sbjct: 296 NVVGREM 302
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural genomics,
uncharacterized protein, protein struct initiative,
PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 281 bits (721), Expect = 1e-85
Identities = 54/354 (15%), Positives = 122/354 (34%), Gaps = 56/354 (15%)
Query: 1151 NWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLV----IKPHDTWADLDNKFYEKV 1206
+ + Y + + DL +I +A + + I P+ A+ N
Sbjct: 2 SLSNYIAGTLSFYVLR-NPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIE 60
Query: 1207 TALKK--KGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDW 1264
T ++ + + S +++N+ AR+ + ++ + + + G+ +D+
Sbjct: 61 TTWQRRVTPLATITNLTSGGFS-TEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDF 119
Query: 1265 EYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSP---SKAVIDNAYDIP 1321
E A+D+ F +++LR +L+ AV YD
Sbjct: 120 EQV----------SAADRDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYG 169
Query: 1322 VMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKV 1381
+ ++++ +M YD+H + G VAP+ ++ + ++ +K+
Sbjct: 170 GIGAVVNYMFIMAYDWHHAGS-EPGPVAPIT----------EIRRTIEFTIA-QVPSRKI 217
Query: 1382 IFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVVVRD 1441
I G+P+YG + + + T A ++ + +
Sbjct: 218 IIGVPLYGYDWIIPYQP----------------GTVASAIS-NQNAIERAMRYQAPIQYS 260
Query: 1442 RKRRIGPYAFKGDQ-----WVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ + P+ DQ V F+ + K + V+ L W L L +
Sbjct: 261 AEYQS-PFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTLAEG 313
Score = 224 bits (573), Expect = 1e-65
Identities = 50/267 (18%), Positives = 102/267 (38%), Gaps = 35/267 (13%)
Query: 758 NWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLI----IKAHDSWADFDNRFYERV 813
+ + Y G + DL ++ +A S I I + A+ N
Sbjct: 2 SLSNYIAGTLSFYVLR-NPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIE 60
Query: 814 VTLKK--KGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDW 871
T ++ + + S +++N+ TAR + ++ + + G+ +D+
Sbjct: 61 TTWQRRVTPLATITNLTSGGFS-TEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDF 119
Query: 872 EYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSP---SKQVINAAYDVK 928
E +D++ F F+R+L + G +L+ AV YD
Sbjct: 120 EQV----------SAADRDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYG 169
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKL 988
+ ++++ +M YD+H + G VAP+ T+ + + PSRK+
Sbjct: 170 GIGAVVNYMFIMAYDWHHAGS-EPGPVAPIT----------EIRRTIEFTI-AQVPSRKI 217
Query: 989 VMGMPMYGQAFSLANSNDHGLNAAAPG 1015
++G+P+YG + + G A+A
Sbjct: 218 IIGVPLYGYDWIIPYQP--GTVASAIS 242
Score = 159 bits (405), Expect = 3e-43
Identities = 46/354 (12%), Positives = 106/354 (29%), Gaps = 69/354 (19%)
Query: 136 YRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANP 195
+ + P + I+ Y + P + + +
Sbjct: 17 RNPDLDRELINDYAPYSSSISIFEYH--------IAPNGDIANQLNDAAAIETTWQRRVT 68
Query: 196 ELKVYLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDED 249
L + + ++ +R N ++++ ++ + G+ +
Sbjct: 69 PLATITNLTSGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTI----------- 117
Query: 250 DDDLESIANE-RSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLV---DISVVAPLV 305
D E ++ R F+ F+++L L+ Y LT+ P + D + +V
Sbjct: 118 --DFEQVSAADRDLFTGFLRQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVV 175
Query: 306 DLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIG 365
+ + + +++ H E +A I + + +IIIG
Sbjct: 176 NYMFIMAYDWHHAGSE--------------PGPVAPITEIRRTI-EFTIAQVPSRKIIIG 220
Query: 366 IPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTW-RHFTDSN 424
+P +G + + PGT ++ + ++
Sbjct: 221 VPLYGYDWII-----------PYQPGTVAS------AISNQNAIERAMRYQAPIQYSAEY 263
Query: 425 GEPFMVKKDE-----WITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDDFRGFC 473
PF D+ + +E S+ RKM +++ L W L L +
Sbjct: 264 QSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTLAEGHHHH 317
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM barrel,
chitin binding, glyco hydrolase, hydrolase; 2.10A {Crocus
vernus}
Length = 275
Score = 269 bits (689), Expect = 7e-82
Identities = 53/287 (18%), Positives = 110/287 (38%), Gaps = 27/287 (9%)
Query: 1149 FTNWAWYRQ-SGGKYLPSDIDSDLCT-HVIYGFAVLDTDQLVIKP----HDTWADLDNKF 1202
F + Y SG K+ I+ + + FAV T + + D
Sbjct: 3 FVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILG 62
Query: 1203 YEKVTALKKK--GVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGL 1260
++++A+K V+V +++GG + + + + S + + I +N DG+
Sbjct: 63 PDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGI 122
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDI 1320
D+D+E+ +DK FA+ I L + ++ A++SP +V Y +
Sbjct: 123 DIDYEHF----------QNTDKNTFAECIGRLITTLKKNGVISFASISPFPSVD--EYYL 170
Query: 1321 PVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKK 1380
+ +E + I+ + Y + +D T + N + N + S G
Sbjct: 171 ALFNEYKNAINHINYQFKA-YDSSTSVDKFLGYYNNAASKYKGGN--VLISFSTGPHPGG 227
Query: 1381 VIFGMPMYGQSFTLADKNK-NGLNSQTYGGAEAG---ENTRARGFLA 1423
+ + + +L +K K +G+ T +++ A+ FL
Sbjct: 228 LPVDKGFFDAATSLKNKGKLHGIAVWTADTSKSSDFRYEEEAQAFLV 274
Score = 263 bits (673), Expect = 1e-79
Identities = 48/263 (18%), Positives = 99/263 (37%), Gaps = 24/263 (9%)
Query: 756 FTNWAWYRPGKG-KYVPEDIRTDLCT-HIVYGFAVLDSENLIIKA----HDSWADFDNRF 809
F + Y G K+ I + V FAV + + + + + D
Sbjct: 3 FVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILG 62
Query: 810 YERVVTLKKK--GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGL 867
+++ +K V+V++++GG + + + + + + + + +Y DG+
Sbjct: 63 PDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGI 122
Query: 868 DLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDV 927
D+D+E+ ++DK +F + L K +G++ A++SP V Y +
Sbjct: 123 DIDYEHF----------QNTDKNTFAECIGRLITTLKKNGVISFASISPFPSVDE--YYL 170
Query: 928 KALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRK 987
+E + I+ + Y + +D T L + + Y N G
Sbjct: 171 ALFNEYKNAINHINYQFKA-YDSSTSVDKFLGYYNNAASKYKGGNV--LISFSTGPHPGG 227
Query: 988 LVMGMPMYGQAFSLANSND-HGL 1009
L + + A SL N HG+
Sbjct: 228 LPVDKGFFDAATSLKNKGKLHGI 250
Score = 121 bits (305), Expect = 2e-30
Identities = 36/272 (13%), Positives = 83/272 (30%), Gaps = 33/272 (12%)
Query: 139 RPATFNVKNVIPQICT-HVIYAYAAIDPVSRALIPED----LEYDVIKGGYKSFLGLKEA 193
F+ + P I + ++A S + + +D G +K +
Sbjct: 13 SGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSILGPDQISAIKSS 72
Query: 194 NPELKVYLAV-------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALN 246
+P ++V +++ + S N ++S+ + Y DG+D++ +
Sbjct: 73 HPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDGIDIDYEHF--- 129
Query: 247 DEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLVDISVVAPLVD 306
+++ F+ I L +TL++N + +++ +
Sbjct: 130 ---------QNTDKNTFAECIGRLITTLKKNGVISFASISP--FPSVDEYYLALFNEYKN 178
Query: 307 LILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGI 366
I ++ D V S N V G P + +
Sbjct: 179 AINHINYQF-KAYDSSTSVDKFLGYYNNAASKYKGGN-----VLISFSTGPHPGGLPVDK 232
Query: 367 PFFGKSYRLFNRSE-YGLGATVKGPGTEGKYT 397
FF + L N+ + +G+ +
Sbjct: 233 GFFDAATSLKNKGKLHGIAVWTADTSKSSDFR 264
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 216 bits (551), Expect = 1e-62
Identities = 63/352 (17%), Positives = 108/352 (30%), Gaps = 51/352 (14%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFY 1203
+V Y W + G D+ + F D+ ++ D F
Sbjct: 8 LLVGY---WHNFDNGTGIIKLKDVSPKW-DVINVSFGETGGDRSTVE-FSPVYGTDADFK 62
Query: 1204 EKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLD 1263
++ LK KG KV L+IGG N + A+ +FI + + I ++ FDG+D+D
Sbjct: 63 SDISYLKSKGKKVVLSIGGQNGVVL------LPDNAAKDRFINSIQSLIDKYGFDGIDID 116
Query: 1264 WEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN--PHDLLLSAAVSPSKAVIDNAYDIP 1321
E + +LI +R + D LLS A P A + Y
Sbjct: 117 LESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGPDFLLSMA--PETAYVQGGYSAY 174
Query: 1322 VMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKV 1381
+G DK T ++ + NY+ A +
Sbjct: 175 -----GSIWGAYLPIIYGVKDKLT-YIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADML 228
Query: 1382 IFGMPMYGQS---FTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEICDKIQKDGWVV 1438
+ G P+ G + F ++ + G A + G+++ E+
Sbjct: 229 LHGFPVGGNANNIFPALRSDQVMI-----GLPAAPAAAPSGGYISPTEMK-----KALNY 278
Query: 1439 VRDRKRRIGPYAFKGDQWVGFDDQAMIHHKAEFVKYNDLGGAMIWALDLDDF 1490
+ G Y Y G M W+++ D
Sbjct: 279 IIKGVPFGGKYKLSNQSG-----------------YPAFRGLMSWSINWDAK 313
Score = 180 bits (459), Expect = 3e-50
Identities = 58/274 (21%), Positives = 90/274 (32%), Gaps = 26/274 (9%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFY 810
+V Y W + G G +D+ I F + + D F
Sbjct: 8 LLVGY---WHNFDNGTGIIKLKDVSPKW-DVINVSFGETGGDRSTV-EFSPVYGTDADFK 62
Query: 811 ERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLD 870
+ LK KG KV L+IGG N + + A+ RFI + + KY FDG+D+D
Sbjct: 63 SDISYLKSKGKKVVLSIGGQNGVVL------LPDNAAKDRFINSIQSLIDKYGFDGIDID 116
Query: 871 WEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG--LLLSAAVSPSKQVINAAYDVK 928
E N + + + +G LLS A AY
Sbjct: 117 LESGIYLNGNDTNFKNPTTPQIVNLISAIRTISDHYGPDFLLSMAPE-------TAYVQG 169
Query: 929 ALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKL 988
S +G DK T ++ + + N+ + A + L
Sbjct: 170 GYSAYGSIWGAYLPIIYGVKDKLT-YIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADML 228
Query: 989 VMGMPMYGQAFSLANSNDH-----GLNAAAPGAG 1017
+ G P+ G A ++ + GL AA A
Sbjct: 229 LHGFPVGGNANNIFPALRSDQVMIGLPAAPAAAP 262
Score = 100 bits (251), Expect = 7e-23
Identities = 52/376 (13%), Positives = 105/376 (27%), Gaps = 69/376 (18%)
Query: 123 KHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKG 182
+V Y + + +K+V P+ + ++ R+ + Y
Sbjct: 6 SKLLVGYWHN---FDNGTGIIKLKDVSPKW-DVINVSFGETGG-DRSTVEFSPVYGTDAD 60
Query: 183 GYKSFLGLKEANPELKVYLAVK-SNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVK 241
LK KV L++ N V + D ++ FI+S+ + D Y FDG+D++++
Sbjct: 61 FKSDISYLKSKG--KKVVLSIGGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLE 118
Query: 242 DPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLT------------SPGVI 289
+ +D + ++ I + + L+ S
Sbjct: 119 SGIYLNGNDTNFKN--PTTPQIVNLISAIRTISDHYGPDFLLSMAPETAYVQGGYSAYGS 176
Query: 290 DRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIES-A 348
L I V + I ++ +N + +V +
Sbjct: 177 IWGAYLPIIYGVKDKLTYIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGG 236
Query: 349 VYNWIKKGARPEQIIIGIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEV 408
N I R +Q++IG+P A G GY++ E+
Sbjct: 237 NANNIFPALRSDQVMIGLPAAP-------------AAAPSG-----------GYISPTEM 272
Query: 409 CNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLGGAMLWTLDLDD 468
+ + + + Y G M W+++ D
Sbjct: 273 KKALNYIIK-----------------GVPFGGKYKLSNQSGYPA---FRGLMSWSINWDA 312
Query: 469 FRG--FCGQKYPLLSA 482
F
Sbjct: 313 KNNFEFSNNYRTYFDG 328
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase (glucosidase);
1.90A {Streptomyces plicatus} SCOP: c.1.8.5 PDB: 1c90_A
1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A 1c93_A
Length = 271
Score = 207 bits (528), Expect = 3e-60
Identities = 51/280 (18%), Positives = 100/280 (35%), Gaps = 23/280 (8%)
Query: 1136 PPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPH--- 1192
P K V Y + GKY +D + + A ++ D +
Sbjct: 2 PAPVKQGPTSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHF 61
Query: 1193 --DTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVN 1250
+ LDN ++ L+++G+KV L++ G + AG ++ SQQA S F + +
Sbjct: 62 NENVQRVLDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG--FANFP-SQQAASAFAKQLSD 117
Query: 1251 FILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPS 1310
+ ++ DG+D D EY + + F L+ LRA P ++ + P+
Sbjct: 118 AVAKYGLDGVDFDDEYAEYGNNGT---AQPNDSSFVHLVTALRANM-PDKIISLYNIGPA 173
Query: 1311 KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPN----DTTPTFNANY 1366
+ + +Y +S+ D+ Y+G W + P T
Sbjct: 174 ASRL--SYGGVDVSDKFDY---AWNPYYGTWQVPGIALPKAQLSPAAVEIGRTSRSTVAD 228
Query: 1367 SLHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQT 1406
V G + + + ++ ++ + S+
Sbjct: 229 LARRTVDEGY-GVYLTYNLDGGDRTADVSAFTRELYGSEA 267
Score = 188 bits (478), Expect = 1e-53
Identities = 45/268 (16%), Positives = 89/268 (33%), Gaps = 21/268 (7%)
Query: 744 SPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAH---- 799
+P+ Q V Y GKY D + V A ++ + A+
Sbjct: 3 APVKQGPTSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFN 62
Query: 800 -DSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKF 858
+ DN ++ L+++G+KV L++ G + G ++ S A F + +
Sbjct: 63 ENVQRVLDNAV-TQIRPLQQQGIKVLLSVLGNHQGAG--FANFP-SQQAASAFAKQLSDA 118
Query: 859 LLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSK 918
+ KY DG+D D EY + + SF V L P ++ + P+
Sbjct: 119 VAKYGLDGVDFDDEYAEY---GNNGTAQPNDSSFVHLVTALRANM-PDKIISLYNIGPAA 174
Query: 919 QVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHP-DDDFFYFNANFTMNY 977
+ +Y +S+ D+ Y+G W + P + + + +
Sbjct: 175 SRL--SYGGVDVSDKFDY---AWNPYYGTWQVPGIALPKAQLSPAAVEIGRTSRSTVADL 229
Query: 978 --WMKKGAPSRKLVMGMPMYGQAFSLAN 1003
L + + ++
Sbjct: 230 ARRTVDEGYGVYLTYNLDGGDRTADVSA 257
Score = 86.2 bits (213), Expect = 2e-18
Identities = 32/244 (13%), Positives = 69/244 (28%), Gaps = 28/244 (11%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIP----EDLEYDVI 180
V YVE + + + + + A I+ + + V+
Sbjct: 10 TSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFNENVQRVL 69
Query: 181 KGGYKSFLGLKEANPELKVYLAV-----KSNFVSITSDRESRLNFISSVLEMFDMYKFDG 235
L+ +KV L+V + F + S ++ F + + Y DG
Sbjct: 70 DNAVTQIRPLQ--QQGIKVLLSVLGNHQGAGFANFPSQ-QAASAFAKQLSDAVAKYGLDG 126
Query: 236 LDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSL 295
+D + + + S F + L + + + ++L + G
Sbjct: 127 VDFDDEYAEYGNNGTA-----QPNDSSFVHLVTALRANM--PDKIISLYNIG-PAASRLS 178
Query: 296 VDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQ---VTSTIANFNNIESAVYNW 352
V+ D N + VP K + V + + +
Sbjct: 179 YGGVDVSDKFDYA-----WNPYYGTWQVPGIALPKAQLSPAAVEIGRTSRSTVADLARRT 233
Query: 353 IKKG 356
+ +G
Sbjct: 234 VDEG 237
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 208 bits (531), Expect = 3e-59
Identities = 63/429 (14%), Positives = 128/429 (29%), Gaps = 66/429 (15%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
TT + + K+ T + KP+ T +K + + K +
Sbjct: 15 SPVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLKAESVVLEHRSYCSAKARD 74
Query: 1134 VIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHD 1193
++ Y T W + Y + + T + + L +
Sbjct: 75 RHFAG-----DVLGYVTPW-----NSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVT 124
Query: 1194 TWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFIL 1253
D+D + V KG+ + + + + + + +++S+ + VV
Sbjct: 125 GLHDVDQGWMRAVRK-HAKGLHIVPRLLFEDWT-YDDFRNVLDSEDEIEELSKTVVQVAK 182
Query: 1254 EHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAV 1313
+FDG ++ + + G ++ L A + LL + P+
Sbjct: 183 NQHFDGFVVEVWNQ---------LLSQKRVGLIHMLTHLAEALHQARLLALLVIPPAITP 233
Query: 1314 IDN------AYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYS 1367
+ + ++ LD S+MTYDY G AP+
Sbjct: 234 GTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQ--PGPNAPLS----------WVRAC 281
Query: 1368 LHYWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYGGAEAGENTRARGFLAYYEI 1427
+ R K++ G+ YG + + AR +
Sbjct: 282 VQVLDPKSKWRSKILLGLNFYGMDYAT--------------------SKDAREPVVGARY 321
Query: 1428 CDKIQKDGWVVVRDRKRRIGPYAFK----GDQWVGFDDQAMIHHKAEFVKYNDLGGAMIW 1483
++ +V D + + +K G V + + + E + +G IW
Sbjct: 322 IQTLKDHRPRMVWDSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGV-SIW 380
Query: 1484 AL--DLDDF 1490
L LD F
Sbjct: 381 ELGQGLDYF 389
Score = 176 bits (447), Expect = 5e-48
Identities = 51/331 (15%), Positives = 90/331 (27%), Gaps = 44/331 (13%)
Query: 683 PTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTE 742
P T + + K + D G + H S
Sbjct: 16 PVHTTLSKSDAKKAASKTLLEKSQFSDKPVQDRGLVVTDLK------AESVVLEHRSYCS 69
Query: 743 KSPLDQYF--KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHD 800
D++F ++ Y T W Y + T I + L +
Sbjct: 70 AKARDRHFAGDVLGYVTPW-----NSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVT 124
Query: 801 SWADFDNRFYERVVTLKKK-GVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFL 859
D D + V K + L W + +++S + + VV+
Sbjct: 125 GLHDVDQGWMRAVRKHAKGLHIVPRLLFEDWTYDD---FRNVLDSEDEIEELSKTVVQVA 181
Query: 860 LKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQ 919
FDG ++ + + L +A LL + P+
Sbjct: 182 KNQHFDGFVVEVWNQL---------LSQKRVGLIHMLTHLAEALHQARLLALLVIPPAIT 232
Query: 920 VIN------AAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANF 973
+ + L+ LD S+MTYDY G APL
Sbjct: 233 PGTDQLGMFTHKEFEQLAPVLDGFSLMTYDYSTAHQ--PGPNAPLS----------WVRA 280
Query: 974 TMNYWMKKGAPSRKLVMGMPMYGQAFSLANS 1004
+ K K+++G+ YG ++ +
Sbjct: 281 CVQVLDPKSKWRSKILLGLNFYGMDYATSKD 311
Score = 118 bits (297), Expect = 2e-28
Identities = 49/349 (14%), Positives = 108/349 (30%), Gaps = 68/349 (19%)
Query: 140 PATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKV 199
++V V T + + + R + +DV +G ++ +++ L +
Sbjct: 90 SHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRA---VRKHAKGLHI 146
Query: 200 YLAV------KSNFVSITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDL 253
+ +F ++ + +V+++ FDG + V + L
Sbjct: 147 VPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQLL-------- 198
Query: 254 ESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTSLV------DISVVAPLVDL 307
+ +R + L+ L + L P I T + + +AP++D
Sbjct: 199 ---SQKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAPVLDG 255
Query: 308 ILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIP 367
L ++ D +P A + + + V K +I++G+
Sbjct: 256 FSLMTY------DYSTAHQPGP---------NAPLSWVRACVQVLDPKSKWRSKILLGLN 300
Query: 368 FFGKSYRLFNRSEYGLGATVKGPGTEGKYTQMPGYLAFFEVCNKFKDKTWRHFTDSNGEP 427
F+G Y K + L + + E
Sbjct: 301 FYGMDYAT-----------SKDAREPVVGARYIQTLK--------DHRPRMVWDSQASEH 341
Query: 428 FMVKKDE-----WITYENNDSIRRKMNYIKDRHLGGAMLWTL--DLDDF 469
F K + Y S++ ++ ++ +G ++ W L LD F
Sbjct: 342 FFEYKKSRSGRHVVFYPTLKSLQVRLELARELGVGVSI-WELGQGLDYF 389
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 186 bits (472), Expect = 1e-52
Identities = 51/279 (18%), Positives = 89/279 (31%), Gaps = 20/279 (7%)
Query: 1135 IPPSTKDEFKIVCYF-TNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPH- 1192
+ +TK K+ + N + + L V+ A ++ D K
Sbjct: 2 VTGTTKANIKLFSFTEVNDTNPLN-NLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFV 60
Query: 1193 ---DTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVV 1249
L + + L+ KG+KV L+I G +D +G + L S F +
Sbjct: 61 SNNPNVQHLLTNRAKYLKPLQDKGIKVILSILGNHDRSG--IANL--STARAKAFAQELK 116
Query: 1250 NFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSP 1309
N +N DG+ D EY A L E + A + L++ V
Sbjct: 117 NTCDLYNLDGVFFDDEYSAYQTPPPSGFVTPSNNAAARLAYETKQAMP--NKLVTVYVYS 174
Query: 1310 SKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLH 1369
+ A D ++ +DY G +D T + L + ++
Sbjct: 175 RTSSFPTAVDGVNAG---SYVDYAIHDYGGSYDLATNYP----GLAKSGMVMSSQEFNQG 227
Query: 1370 YWVSHGADRKKVIFGMPMYGQSFTLADKNKNGLNSQTYG 1408
+ + A R V G + F + N + Q
Sbjct: 228 RYATAQALRNIVTKGYGGHM-IFAMDPNRSNFTSGQLPA 265
Score = 174 bits (441), Expect = 1e-48
Identities = 43/276 (15%), Positives = 77/276 (27%), Gaps = 23/276 (8%)
Query: 750 FKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAH----DSWADF 805
K+ + + ++ L +V A ++ + K +
Sbjct: 10 IKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFVSNNPNVQHL 69
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
+ + L+ KG+KV L+I G +D G + L S + F + + Y D
Sbjct: 70 LTNRAKYLKPLQDKGIKVILSILGNHDRSG--IANL--STARAKAFAQELKNTCDLYNLD 125
Query: 866 GLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAY 925
G+ D EY + E QA L++ V A
Sbjct: 126 GVFFDDEYSAYQTPPPSGFVTPSNNAAARLAYETKQAMPNK--LVTVYVYSRTSSFPTAV 183
Query: 926 DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPS 985
D +D+ +DY G +D T + + F + A
Sbjct: 184 DGVNAGSYVDY---AIHDYGGSYDLATNYPGL----AKSGMVMSSQEFNQGRYATAQALR 236
Query: 986 RKL------VMGMPMYGQAFSLANSNDHGLNAAAPG 1015
+ M M + + L A
Sbjct: 237 NIVTKGYGGHMIFAMDPNRSNFTSGQLPALKLIAKE 272
Score = 70.1 bits (171), Expect = 7e-13
Identities = 26/193 (13%), Positives = 60/193 (31%), Gaps = 19/193 (9%)
Query: 125 QVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIP-----EDLEYDV 179
++ + E F +KN + V+ A I+ + ++++ +
Sbjct: 11 KLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFVSNNPNVQH-L 69
Query: 180 IKGGYKSFLGLKEANPELKVYLAVK-----SNFVSITSDRESRLNFISSVLEMFDMYKFD 234
+ K L++ +KV L++ S ++++ F + D+Y D
Sbjct: 70 LTNRAKYLKPLQDKG--IKVILSILGNHDRSGIANLST--ARAKAFAQELKNTCDLYNLD 125
Query: 235 GLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVIDRKTS 294
G+ + + A + + E + N +T+ +
Sbjct: 126 GVFFDDEYSAYQTPPPSGFV--TPSNNAAARLAYETKQAM--PNKLVTVYVYSRTSSFPT 181
Query: 295 LVDISVVAPLVDL 307
VD VD
Sbjct: 182 AVDGVNAGSYVDY 194
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 173 bits (441), Expect = 2e-48
Identities = 55/264 (20%), Positives = 95/264 (35%), Gaps = 45/264 (17%)
Query: 1131 PKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIK 1190
P P +P + +++CY R LP ++ TH+I L+ D I
Sbjct: 2 PMPPVPGRPEH-RRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHIT 60
Query: 1191 PHDTWADLD--NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHV 1248
+D D + N + +V LK+ GVKV +GG A Y L Q+ ++ +
Sbjct: 61 LNDDPPDHEMYNPLWAEVPVLKRSGVKVMGMLGGA---AQGSYRCLDGDQEKFERYYQPL 117
Query: 1249 VNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVS 1308
+ + H DGLDLD E G LI L+ ++ A V+
Sbjct: 118 LAMVRRHQLDGLDLDVEEE------------MSLPGIIRLIDRLKLDLGDDFIITLAPVA 165
Query: 1309 PSKAVIDN--AYDIPVMSEN----LDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTF 1362
+ I N +D + + + W + Y+ G + +
Sbjct: 166 AALLGIGNLSGFDYRQLEQQRGSKISWYNAQFYNGWGLA---------------EDPRMY 210
Query: 1363 NANYSLHYWVSHGADRKKVIFGMP 1386
A V+ G ++V++G+
Sbjct: 211 AA------IVAQGWSPQRVVYGLL 228
Score = 167 bits (425), Expect = 3e-46
Identities = 45/258 (17%), Positives = 85/258 (32%), Gaps = 44/258 (17%)
Query: 744 SPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWA 803
++ +++CY R +P THI+ L+ + I +D
Sbjct: 7 PGRPEHRRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPP 66
Query: 804 DFD--NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLK 861
D + N + V LK+ GVKV +GG G Y L +R+ + ++ + +
Sbjct: 67 DHEMYNPLWAEVPVLKRSGVKVMGMLGGAA---QGSYRCLDGDQEKFERYYQPLLAMVRR 123
Query: 862 YQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLL----LSAAVSPS 917
+Q DGLDLD E + L ++ ++AA+
Sbjct: 124 HQLDGLDLDVEEEM------------SLPGIIRLIDRLKLDLGDDFIITLAPVAAALLGI 171
Query: 918 KQVINAAY--DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTM 975
+ Y + + W + Y+ G +D Y
Sbjct: 172 GNLSGFDYRQLEQQRGSKISWYNAQFYNGWGLA--------------EDPRMY------- 210
Query: 976 NYWMKKGAPSRKLVMGMP 993
+ +G +++V G+
Sbjct: 211 AAIVAQGWSPQRVVYGLL 228
Score = 68.0 bits (166), Expect = 3e-12
Identities = 38/257 (14%), Positives = 77/257 (29%), Gaps = 46/257 (17%)
Query: 120 PGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALI-----PED 174
+V+CY + R + TH+I A ++ + P+
Sbjct: 9 RPEHRRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDH 68
Query: 175 LEYDVIKGGYKSFLGLKEANPELKVYL----AVKSNFVSITSDRESRLNFISSVLEMFDM 230
Y+ + LK + +KV A + ++ + D+E + +L M
Sbjct: 69 EMYNPLWAEVPV---LKRSG--VKVMGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVRR 123
Query: 231 YKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLTSPGVID 290
++ DGLDL D+E + I L L + +TL
Sbjct: 124 HQLDGLDL-------------DVEEEMS-LPGIIRLIDRLKLDLGDDFI-ITLAPV---- 164
Query: 291 RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVY 350
+ + D L+ + N Q + +
Sbjct: 165 --AAALLGIGNLSGFDYRQLEQQRGSKISW----------YNAQFYNGWGLAED-PRMYA 211
Query: 351 NWIKKGARPEQIIIGIP 367
+ +G P++++ G+
Sbjct: 212 AIVAQGWSPQRVVYGLL 228
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 139 bits (351), Expect = 4e-36
Identities = 37/261 (14%), Positives = 81/261 (31%), Gaps = 28/261 (10%)
Query: 1144 KIVCYFTNWA-----WYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADL 1198
+V Y+ NW Y+ + + F Q + +
Sbjct: 6 VLVGYWHNWKSTGKDGYKGGSSADFNLSSTQEGYNVINVSFMKTPEGQ-TLPTFKPYNKT 64
Query: 1199 DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFD 1258
D +F +++ L +G V +A+GG + + S F+ ++ + + FD
Sbjct: 65 DTEFRAEISKLNAEGKSVLIALGGADAH----IEL---KKSQESDFVNEIIRLVDTYGFD 117
Query: 1259 GLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN--PHDLLLSAAVSPSKAVIDN 1316
GLD+D E D ++ +K+++ + + +++ A
Sbjct: 118 GLDIDLEQAAIEAAD-------NQTVIPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSG 170
Query: 1317 AY--DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNA----NYSLHY 1370
Y I + D+I+ Y+ G + + ++ F
Sbjct: 171 KYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGT 230
Query: 1371 WVSHGADRKKVIFGMPMYGQS 1391
K + G+P +
Sbjct: 231 DGFIKIPASKFVIGLPSNNDA 251
Score = 136 bits (343), Expect = 4e-35
Identities = 42/261 (16%), Positives = 83/261 (31%), Gaps = 28/261 (10%)
Query: 751 KIVCYFTNWA-----WYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADF 805
+V Y+ NW Y+ G + I F + +
Sbjct: 6 VLVGYWHNWKSTGKDGYKGGSSADFNLSSTQEGYNVINVSFMKTPE-GQTLPTFKPYNKT 64
Query: 806 DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFD 865
D F + L +G V +A+GG + + + F+ +++ + Y FD
Sbjct: 65 DTEFRAEISKLNAEGKSVLIALGGADAHIEL-------KKSQESDFVNEIIRLVDTYGFD 117
Query: 866 GLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHG--LLLSAAVSPSKQVINA 923
GLD+D E + ++++ ++ G +++ A +
Sbjct: 118 GLDIDLEQAAIEAADNQTV-------IPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSG 170
Query: 924 AY--DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMN----Y 977
Y + L D+I+ Y+ G + + + D+ F T
Sbjct: 171 KYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGT 230
Query: 978 WMKKGAPSRKLVMGMPMYGQA 998
P+ K V+G+P A
Sbjct: 231 DGFIKIPASKFVIGLPSNNDA 251
Score = 53.5 bits (128), Expect = 3e-07
Identities = 31/257 (12%), Positives = 81/257 (31%), Gaps = 24/257 (9%)
Query: 122 TKHQVVCYVE-----AKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLE 176
+V Y K Y+ + + + + ++ +P
Sbjct: 3 LDKVLVGYWHNWKSTGKDGYKGGSSADFNLSSTQEGYNVINVSFMKTPEGQT--LPTFKP 60
Query: 177 YDVIKGGYKSFLG-LKEANPELKVYLAVKSNFVSITSDRESRLNFISSVLEMFDMYKFDG 235
Y+ +++ + L V +A+ I + +F++ ++ + D Y FDG
Sbjct: 61 YNKTDTEFRAEISKLNAEG--KSVLIALGGADAHIELKKSQESDFVNEIIRLVDTYGFDG 118
Query: 236 LDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQLTLT----SPGVIDR 291
LD++++ A+ D+ + + ++++ R++ +T P +
Sbjct: 119 LDIDLEQAAIEAADNQTV---------IPSALKKVKDHYRKDGKNFMITMAPEFPYLTSS 169
Query: 292 KTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYN 351
I+ + D I + +N + + + + V
Sbjct: 170 GKYAPYINNLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTG 229
Query: 352 WIK-KGARPEQIIIGIP 367
+ +IG+P
Sbjct: 230 TDGFIKIPASKFVIGLP 246
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP: c.1.8.5
Length = 290
Score = 125 bits (315), Expect = 9e-32
Identities = 44/270 (16%), Positives = 95/270 (35%), Gaps = 37/270 (13%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSD-LCTHVIYGFAVLDTDQLVI---KPHDTWADLD 1199
I + + + I+++ L H I GFA+ + ++W D++
Sbjct: 3 PIFREYIGVKPNSTTLHDFPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESW-DVE 61
Query: 1200 NKFYEKVTALKKK--GVKVTLAIGGWNDSAG---NKYSRLVNSQQARSKFIAHVVNFILE 1254
EKV LK++ VKV ++IGG + + + V++ + K I +
Sbjct: 62 LFGPEKVKNLKRRHPEVKVVISIGGRGVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSG 121
Query: 1255 HNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVI 1314
+ DG+D+ +E+ + + FA L+ +L D L VS + +
Sbjct: 122 NLIDGIDIHYEHIR------------SDEPFATLMGQLITELKKDDDLNINVVSIAPSEN 169
Query: 1315 DNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSH 1374
++++ + + D+I+ + Y + Q + +A + +
Sbjct: 170 NSSHYQKLYNAKKDYINWVDYQFSNQQKPVSTD---------------DAFVEIFKSLEK 214
Query: 1375 GADRKKVIFGMPMYGQSFTLADKNKNGLNS 1404
KV+ G ++
Sbjct: 215 DYHPHKVLPGFSTDPLDTKHNKITRDIFIG 244
Score = 125 bits (315), Expect = 1e-31
Identities = 46/257 (17%), Positives = 79/257 (30%), Gaps = 44/257 (17%)
Query: 770 VPEDIRTD--LCTHIVYGFAVLDSENLII---KAHDSWADFDNRFYERVVTLKKK--GVK 822
P +I L H + GFA+ +SW D + E+V LK++ VK
Sbjct: 21 FPTEIINTETLEFHYILGFAIESYYESGKGTGTFEESW-DVELFGPEKVKNLKRRHPEVK 79
Query: 823 VSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKY------QFDGLDLDWEYPTC 876
V ++IGG + E + + KY DG+D+ +E+
Sbjct: 80 VVISIGGRGVN---TPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHI-- 134
Query: 877 WQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDW 936
E F + +L K L VS + N+++ K + D+
Sbjct: 135 ----------RSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLYNAKKDY 184
Query: 937 ISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMYG 996
I+ + Y + Q + DD F + +Y K++ G
Sbjct: 185 INWVDYQFSNQQKPVS---------TDDAFVEIFKSLEKDY------HPHKVLPGFSTDP 229
Query: 997 QAFSLANSNDHGLNAAA 1013
Sbjct: 230 LDTKHNKITRDIFIGGC 246
Score = 57.0 bits (137), Expect = 1e-08
Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 50/233 (21%)
Query: 150 PQICTHVIYAYA--AIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAV---- 203
+ H I +A + + + +DV G + LK +PE+KV +++
Sbjct: 29 ETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISIGGRG 88
Query: 204 KSNFVSITSDRESRLNFISSVLEMFDMYK------FDGLDLNVKDPALNDEDDDDLESIA 257
+ + N S+ + Y DG+D++ +
Sbjct: 89 VNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHI-------------- 134
Query: 258 NERSDFSTFIQELSSTLRRN---NYQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFN 314
F+T + +L + L+++ N + +P + + ++ + + N
Sbjct: 135 RSDEPFATLMGQLITELKKDDDLNINVVSIAPSENNSSHYQKLYNAKKDYINWVDYQFSN 194
Query: 315 NDHMDDEVVPVKPNTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIP 367
ST F I + ++K P +++ G
Sbjct: 195 QQKP-----------------VSTDDAFVEI----FKSLEKDYHPHKVLPGFS 226
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 119 bits (299), Expect = 2e-28
Identities = 42/339 (12%), Positives = 84/339 (24%), Gaps = 20/339 (5%)
Query: 1068 EQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPT 1127
T + + T P+
Sbjct: 93 ANEGILTVNANTKSAEVEMTIRAGEGLQEDKTYAIPVAISDQSSDITIKDEDAKHCIYLV 152
Query: 1128 TVKPKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTD-- 1185
+ + +F + + + V+ A ++ D
Sbjct: 153 KDMRNAGDAYKGEGVMQGYLFFEVNDVNPLNTLSFQLENGKLLW-DVVVLFAANINYDAE 211
Query: 1186 --QLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSK 1243
+ ++ + L + + L+++GVKV L + G +D G ++L S+Q
Sbjct: 212 AGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGNHDITG--LAQL--SEQGAKD 267
Query: 1244 FIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLL 1303
F V + +N DG++ D EY + A L E + A P L+
Sbjct: 268 FAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAM-PDKLVT 326
Query: 1304 SAAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTG----HVAPMYALPNDTT 1359
V D E +D + +Y + + N
Sbjct: 327 VFDWGQMYGV--ATVDGVDAKEWIDI---VVANYGSAAYPIGQMTKKQCSGISMEFNLGG 381
Query: 1360 PTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKN 1398
+ + G + F +
Sbjct: 382 GGSLSASKAQSMIDGGY-GWFMGFAPSPAKYGSVFSRLQ 419
Score = 107 bits (267), Expect = 2e-24
Identities = 38/284 (13%), Positives = 81/284 (28%), Gaps = 22/284 (7%)
Query: 676 VPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTT 735
K + + P + ++D + ++
Sbjct: 99 TVNANTKSAEVEMTIRAGEGLQEDKTYAIPVAISDQSSDITIKDEDAKHCIYLVKDMRNA 158
Query: 736 THISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVL-----D 790
+ + +F + E+ L +V FA +
Sbjct: 159 GDAY-----KGEGVMQGYLFFEVNDVNPLNTLSFQLEN--GKLLWDVVVLFAANINYDAE 211
Query: 791 SENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQR 850
+ ++ + + + + L+++GVKV L + G +D G ++L S +
Sbjct: 212 AGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGNHDITG--LAQL--SEQGAKD 267
Query: 851 FIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLL 910
F V ++ Y DG++ D EY ++ + + + E QA P L+
Sbjct: 268 FAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTNPSTAAAARLCYETKQAM-PDKLVT 326
Query: 911 SAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGH 954
V D E +D + +Y
Sbjct: 327 VFDWGQMYGVA--TVDGVDAKEWIDI---VVANYGSAAYPIGQM 365
Score = 41.1 bits (95), Expect = 0.003
Identities = 26/207 (12%), Positives = 58/207 (28%), Gaps = 13/207 (6%)
Query: 106 ILHSPKDNYRFMQQPGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIY-AYAAID 164
L N + Q + E +F ++N V++ A D
Sbjct: 150 YLVKDMRNAGDAYKGEGVMQGYLFFEVNDVNPLNTLSFQLENGKLLWDVVVLFAANINYD 209
Query: 165 PVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVK-----SNFVSITSDRESRLN 219
+ + L +KV L + + ++ + +
Sbjct: 210 AEAGRPRVQCNPNVQYLLDNNETLLQPLRRRGVKVLLGLLGNHDITGLAQLSE--QGAKD 267
Query: 220 FISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNY 279
F V + Y DG++ + + D + L + + + E + +
Sbjct: 268 FAREVAQYCKAYNLDGVNYDDEYSNSPDLSNPSLTN--PSTAAAARLCYETKQAMP--DK 323
Query: 280 QLTLTSPGVIDRKTSLVDISVVAPLVD 306
+T+ G + + VD +D
Sbjct: 324 LVTVFDWGQMYGVAT-VDGVDAKEWID 349
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 107 bits (269), Expect = 2e-25
Identities = 45/248 (18%), Positives = 80/248 (32%), Gaps = 34/248 (13%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLD---- 1199
+ Y+ N+ +G + FA T + + A L
Sbjct: 6 AVTGYWQNFN----NGATVQKISDVPSAYDIIAVAFADATTTPGAVTFNLDSAGLGGYTV 61
Query: 1200 NKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDG 1259
++F V A + G KV +++GG + VNS + + F V + + E+ FDG
Sbjct: 62 DQFKADVRAKQAAGKKVIISVGGEKGTVS------VNSSASATNFANSVYSVMREYGFDG 115
Query: 1260 LDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVS-PSKAVIDNAY 1318
+D+D E + ++ L A P D++L+ A Y
Sbjct: 116 VDIDLENG------------LNPTYMTQALRALSAKAGP-DMILTMAPQTIDMQSTQGGY 162
Query: 1319 DIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADR 1378
D ++V+ Y+ G +YA + G
Sbjct: 163 -FQTALNVKDILTVVNMQYYNSGT-MLGCDGKVYA----QGTVDFLTALACIQLEGGLAP 216
Query: 1379 KKVIFGMP 1386
+V G+P
Sbjct: 217 SQVGLGLP 224
Score = 101 bits (252), Expect = 3e-23
Identities = 44/255 (17%), Positives = 83/255 (32%), Gaps = 38/255 (14%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFD---- 806
+ Y+ N+ G D+ + I FA + + + A
Sbjct: 6 AVTGYWQNFNN---GATVQKISDVPSAY-DIIAVAFADATTTPGAVTFNLDSAGLGGYTV 61
Query: 807 NRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDG 866
++F V + G KV +++GG G S VNS+ + F V + +Y FDG
Sbjct: 62 DQFKADVRAKQAAGKKVIISVGGE----KGTVS--VNSSASATNFANSVYSVMREYGFDG 115
Query: 867 LDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVS---PSKQVINA 923
+D+D E + +R L ++L+ A
Sbjct: 116 VDIDLENG------------LNPTYMTQALRALSAKA-GPDMILTMAPQTIDMQSTQGGY 162
Query: 924 AYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGA 983
+ + L +++ Y+ G +Y DF A ++ G
Sbjct: 163 FQTALNVKDILTVVNMQYYNSGTML----GCDGKVYAQGTVDFLTALA----CIQLEGGL 214
Query: 984 PSRKLVMGMPMYGQA 998
++ +G+P +A
Sbjct: 215 APSQVGLGLPASTRA 229
Score = 41.0 bits (96), Expect = 0.002
Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 31/160 (19%)
Query: 212 SDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELS 271
+ S NF +SV + Y FDG+D+ DLE+ N + + ++ LS
Sbjct: 92 NSSASATNFANSVYSVMREYGFDGVDI-------------DLENGLNP-TYMTQALRALS 137
Query: 272 STLRRNNYQLTLTSPGVID----RKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKP 327
+ + LT+ P ID + V ++ ++ ++ +N+ M
Sbjct: 138 AKAGP-DMILTMA-PQTIDMQSTQGGYFQTALNVKDILTVVNMQYYNSGTMLG------C 189
Query: 328 NTKVNIQVTSTIANFNNIESAVYNWIKKGARPEQIIIGIP 367
+ KV Q + + + ++ G P Q+ +G+P
Sbjct: 190 DGKVYAQ-----GTVDFLTALACIQLEGGLAPSQVGLGLP 224
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT barrel,
hydrolase; 1.50A {Pyrococcus furiosus} PDB: 3a4w_A*
3a4x_A* 3afb_A
Length = 311
Score = 92.4 bits (229), Expect = 3e-20
Identities = 37/235 (15%), Positives = 65/235 (27%), Gaps = 36/235 (15%)
Query: 1173 THVIYGFAVLDTDQLVIKPHDTWADL--DNKFYEKVTALKKKGVKVTLAIGGWNDSAGNK 1230
+ F + + WA KF ++V L++ G +V +A GG
Sbjct: 36 KYFTLAFILYSSV----YNGPAWAGSIPLEKFVDEVRELREIGGEVIIAFGGAVGPY--- 88
Query: 1231 YSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIK 1290
L + + I +N LD D E D AD +
Sbjct: 89 ---LCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAG------------IDADKLADALL 133
Query: 1291 ELRAAFNPHDLLLSAAVSPS------KAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKK 1344
++ + P +I+ V +D ++ MT DY+
Sbjct: 134 IVQRERPWVKFSFTLPSDPGIGLAGGYGIIETMAKKGV---RVDRVNPMTMDYYWTPSNA 190
Query: 1345 TGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKVIFGMPMYGQSFTLADKNK 1399
+ + + W G + G+ FTL D +
Sbjct: 191 ENAIKVAENVFRQLKQIYPEKSDEEIWKMIGLT---PMIGVNDDKSVFTLEDAQQ 242
Score = 82.8 bits (204), Expect = 5e-17
Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 33/178 (18%)
Query: 780 THIVYGFAVLDSENLIIKAHDSWADF--DNRFYERVVTLKKKGVKVSLAIGGWNDSLGGK 837
+ F + S +WA +F + V L++ G +V +A GG
Sbjct: 36 KYFTLAFILYSSVY----NGPAWAGSIPLEKFVDEVRELREIGGEVIIAFGGAVGP---- 87
Query: 838 YSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVR 897
L A+ ++ E +K + Y LD D E DA +
Sbjct: 88 --YLCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGIDADKLADA------------LL 133
Query: 898 ELHQAFKPHGLLLSAAVSPS------KQVINAAYDVKALSESLDWISVMTYDYHGQWD 949
+ + + P +I +D ++ MT DY+
Sbjct: 134 IVQRERPWVKFSFTLPSDPGIGLAGGYGIIETMAKKGV---RVDRVNPMTMDYYWTPS 188
Score = 32.3 bits (73), Expect = 0.97
Identities = 9/58 (15%), Positives = 19/58 (32%)
Query: 210 ITSDRESRLNFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFI 267
+ + +++ D Y LD +++ D+ D L + ER
Sbjct: 89 LCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGIDADKLADALLIVQRERPWVKFSF 146
>1dqc_A Tachycitin; disulfide-rich, antimicrobial protein; NMR {Tachypleus
tridentatus} SCOP: g.31.1.1
Length = 74
Score = 77.5 bits (191), Expect = 2e-17
Identities = 14/52 (26%), Positives = 22/52 (42%)
Query: 547 TCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCS 598
C++ + C SF C ++C L +NA K+CDW C+
Sbjct: 11 PCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCT 62
Score = 75.6 bits (186), Expect = 8e-17
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 610 PKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKC----K 665
+ C + C + C ++ +C GL++N +K CDWP + C K
Sbjct: 7 GRYSPCLDDGPNVNLYSCCSFYNCHKCLARLENCPKGLHYNAYLKVCDWPSKAGCTSVNK 66
Query: 666 QTSATTT 672
+ T
Sbjct: 67 ECHLWKT 73
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.0 bits (165), Expect = 2e-11
Identities = 104/691 (15%), Positives = 196/691 (28%), Gaps = 216/691 (31%)
Query: 20 DVQRRQRSF-YRDSVEGNQRDKAFRRD----SVEALPLH--SKLEFNQAVE--NDEEGMF 70
D + + + Y+D + + AF + V+ +P SK E + + + G
Sbjct: 8 DFETGEHQYQYKDILSVFE--DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 71 GTKWIPLRSAIEKTLLPKERAEEHIPLRDAVERRPILHSPKDNYRFM--------QQPGT 122
W L +E ++ VE + NY+F+ +QP
Sbjct: 66 RLFWTLLSK-------QEEMVQK------FVE-----EVLRINYKFLMSPIKTEQRQPSM 107
Query: 123 KHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKG 182
++ Y+E R R +N V + VSR + Y ++
Sbjct: 108 MTRM--YIE----QRDR--LYNDNQVFAK------------YNVSR---LQ--PYLKLR- 141
Query: 183 GYKSFLGLKEANPELKVYL-----AVKSNFVSIT---SDRESRLNF------------IS 222
L E P V + + K+ + +++F
Sbjct: 142 -----QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 223 SVLEMFDMYKFDGLDLNVK-DPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNNYQL 281
+VLEM L + DP D +N + + EL L+ Y+
Sbjct: 197 TVLEML-------QKLLYQIDPNWTSRSD----HSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 282 TLTSPGVIDRKTSLV-DISVVAPLVDL---ILLKSFNNDHMDDEVVPVKPNTKVNIQVTS 337
L V+ V + +L ILL + D + T +I +
Sbjct: 246 CLL---VLLN----VQNAKAWNAF-NLSCKILLTTRFKQVTDF----LSAATTTHISLDH 293
Query: 338 TIANFNNIES----AVYNWIKKGARPEQIIIGIPF----FGKSYRLF-NRSEY------- 381
E Y + P +++ P +S R +
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 382 GLGATVKG------PGTEGKYTQMPGYLAFFEVCNKFKDKT----WRHFTDSNGEPFMVK 431
L ++ P K L+ F W S+ + K
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 432 -----------KDEWITY-----------ENNDSIRRKM--NYIKDRHLGGAMLWTLDLD 467
K+ I+ EN ++ R + +Y + L LD
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 468 D-FRGFCGQKYPLLSAVVSNLQPDMETPMKSTTESQSQELELVEDELTTIR-TQRPTRPA 525
F G + L + + + L R ++ R
Sbjct: 471 QYFYSHIG--HHLKNI------------------EHPERMTLFRMVFLDFRFLEQKIRHD 510
Query: 526 TSSWWTPITTTESTQ--EEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWN 583
+++W + + Q + Y Y+ D D L+ + + L + +L+
Sbjct: 511 STAWNASGSILNTLQQLKFY-------KPYICDNDPKYERLVNAILDFLPK-IEENLI-- 560
Query: 584 AKKKLCDWSYNVQCSFQSNIVRFSLKPKDES 614
CS ++++R +L +DE+
Sbjct: 561 -------------CSKYTDLLRIALMAEDEA 578
Score = 64.1 bits (155), Expect = 3e-10
Identities = 100/704 (14%), Positives = 200/704 (28%), Gaps = 256/704 (36%)
Query: 237 DLNVKD------PALNDEDDDDL--ESIANERSD--FSTFIQELSSTLRR-------NNY 279
+ + KD L+ E+ D + A + F T + + +++ NY
Sbjct: 32 NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY 91
Query: 280 QLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEVVPVKPNTKVNIQVTSTI 339
+ ++ R+ S++ + + + D++V K N+ S +
Sbjct: 92 KFLMSPIKTEQRQPSMMTRMYIEQR---------DRLYNDNQVFA-----KYNV---SRL 134
Query: 340 ANFNNIESAVYNWIKKGARPEQIII--GIPFFGKSYRLFNRSEYGLGATVKGPGTEGKYT 397
+ + A+ RP + ++ G+ GK++
Sbjct: 135 QPYLKLRQALLE-----LRPAKNVLIDGVLGSGKTW------------------------ 165
Query: 398 QMPGYLAFFEVCNKFKDKTWRHFTDSNGEPFMVKKDEWITYENNDSIRRKMNYIKDRHLG 457
+A +VC +K + F + W+ +N +S +
Sbjct: 166 -----VAL-DVCLSYKVQ--CKM------DFKI---FWLNLKNCNSPETVLE-------- 200
Query: 458 GAMLWTLDLDDFRGFCGQKYPLLSAVVSNLQPDMETPMKSTTESQSQELELVEDELTTIR 517
ML L Q P ++ + D + +K S ++ EL +
Sbjct: 201 --MLQKL--------LYQIDPNWTS-----RSDHSSNIKLRIHS-------IQAELRRLL 238
Query: 518 TQRPTRPA------TSSWW----------TPITT-----TESTQEEYIPETCVNGDYLP- 555
+P + +TT T+ ++ +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 556 DPDD----CRSFLICSHGNLLKQSCG--P---SLLWNAKKK-LCDWSY--NVQCSFQSNI 603
PD+ +L C +L ++ P S++ + + L W +V C + I
Sbjct: 299 TPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 604 VRFS---LKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPY 660
+ S L+P + + +P + I + S L W D +K+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAH-----I--PTILLS----LIWFDVIKSDVMVV 407
Query: 661 RTKCKQTSATTTSEQVPKP-------------TKKPTKPTKKPTTTTEYNPPEATTKPST 707
K + S E+ PK K + + YN P+
Sbjct: 408 VNKLHKYSLV---EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF----- 459
Query: 708 TTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKG 767
DS P LDQYF Y
Sbjct: 460 ------DSDDLIPPY-----------------------LDQYF----YS----------- 475
Query: 768 KYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADF-----DNRFYERVVTLKKKGVK 822
HI + ++ + F D RF E+ ++
Sbjct: 476 -------------HIGHHLKNIE-------HPERMTLFRMVFLDFRFLEQ--KIRHDSTA 513
Query: 823 VSLAIGGWNDSLG--GKYSR-LVNSATARQRFIEHVVKFLLKYQ 863
+ A G ++L Y + ++ +R + ++ FL K +
Sbjct: 514 WN-ASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIE 556
Score = 49.5 bits (117), Expect = 1e-05
Identities = 65/508 (12%), Positives = 131/508 (25%), Gaps = 134/508 (26%)
Query: 1040 TTEEYK-----PTSEE----------SKPTTVSTSTVVTTEEPEQT-------EEPITTT 1077
+ EE + SK + V E +
Sbjct: 47 SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 1078 TTSTTTTTKRPK----PPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
+ +R + +R +P ++ ++P + + K
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS--GKT 164
Query: 1134 VIPPSTKDEFKIVCYFTN---WAWYRQSGGKYLPSDIDSDLCTHVIYGFAVL-DTDQLVI 1189
+ +K+ C W + ++ L + + D +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 1190 KPHDTWADLDNKFYEKVTALKKKGVKVTLAI--GGWNDSAGNKY---SR-LVNSQQARSK 1243
+ + LK K + L + N A N + + L+ + R K
Sbjct: 225 LRIHSIQAELRRL------LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT---RFK 275
Query: 1244 FIAHVVN------FILEHNFDGLDLDWE----YPKCWQVDCKQGPASDKQG-------FA 1286
+ ++ L+H+ L D E K + P A
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334
Query: 1287 DLIKELRAAFNPHDLL----LSAAVSPSKAVIDNA-----Y----------DIP--VMS- 1324
+ I++ A ++ + L+ + S V++ A + IP ++S
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 1325 --ENLDWISVM-------------------TYDYHGQWDKKTGHVAPMYAL--------- 1354
++ VM T + + + YAL
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 1355 ------PNDTTPTFNANYSLHYWVSH--GADRKKVIFGMPMYGQSFT-LADK-NKNGLNS 1404
+D P + Y + H + + + M F L K +
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 1405 QTYGGAEAGENTRARGFLAYYE--ICDK 1430
G NT + L +Y+ ICD
Sbjct: 515 NASGSI---LNTLQQ--LKFYKPYICDN 537
Score = 47.9 bits (113), Expect = 3e-05
Identities = 65/405 (16%), Positives = 136/405 (33%), Gaps = 128/405 (31%)
Query: 9 YIAALIAVSSSDVQRRQRSF--YRDSVEGNQRDKAFRRDSVEALPLHSKLEFNQAVENDE 66
++ + I R + RD + + + F + +V L + KL QA+
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFAKYNVSRLQPYLKLR--QALLELR 148
Query: 67 -------EGMFGT-K----------------------WI----------------PLRSA 80
+G+ G+ K W+ L
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Query: 81 IEKTLLPKERAEEHIPLRDAVERRPILHSPKDNYR-FMQQPGTKHQV-----VCYVEAKS 134
I+ + +I LR +HS + R ++ ++ + V +A +
Sbjct: 209 IDPNWTSRSDHSSNIKLR--------IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 135 AYRHRPATFNV----------KNVIPQICTHVIYAYAAIDPVSRALIPEDLEYDVIKGGY 184
A FN+ K V + + + ++D S L P++++ ++K
Sbjct: 261 A-------FNLSCKILLTTRFKQVTDFL-SAATTTHISLDHHSMTLTPDEVKSLLLK--- 309
Query: 185 KSFLGLK------EA---NP--------ELKVYLAVKSNFVSITSDRESRLNFIS-SVLE 226
+L + E NP ++ LA N+ + D+ + + S +VLE
Sbjct: 310 --YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Query: 227 MFDMYK-FDGL-----DLNVKDPAL----NDEDDDDLESIANERSDFSTFIQELSSTLRR 276
+ K FD L ++ L D D+ + N+ S + +
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK--------YSLVEK 419
Query: 277 NNYQLTLTSPGV-IDRKTSLVDISVV-APLVD-LILLKSFNNDHM 318
+ T++ P + ++ K L + + +VD + K+F++D +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase;
1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5 PDB:
1eom_A*
Length = 290
Score = 61.5 bits (148), Expect = 5e-10
Identities = 35/242 (14%), Positives = 74/242 (30%), Gaps = 53/242 (21%)
Query: 1153 AWYRQSGGKY------LPSDID----SDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKF 1202
A+Y G +P +D L + L ++ ++ DLD
Sbjct: 13 AYYITDGRNPTFKLKDIPDKVDMVILFGLKYWSLQDTTKLPGGTGMMGSFKSYKDLD--- 69
Query: 1203 YEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILE-HNFDGLD 1261
++ +L+ +G+KV I +K + + + + + +++ DG+
Sbjct: 70 -TQIRSLQSRGIKVLQNIDDDVSWQSSK----PGGFASAAAYGDAIKSIVIDKWKLDGIS 124
Query: 1262 LDWE--------------YPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAV 1307
LD E Y G + F ++I EL F A
Sbjct: 125 LDIEHSGAKPNPIPTFPGYAATGYNGWYSGSMAATPAFLNVISELTKYFGTT------AP 178
Query: 1308 SPSKAVIDNAYD-------IPVMSENLDWISVMTYDYH-------GQWDKKTGHVAPMYA 1353
+ + I + D + N ++I + +Y + + T +
Sbjct: 179 NNKQLQIASGIDVYAWNKIMENFRNNFNYIQLQSYGANVSRTQLMMNYATGTNKIPASKM 238
Query: 1354 LP 1355
+
Sbjct: 239 VF 240
Score = 57.6 bits (138), Expect = 9e-09
Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 42/235 (17%)
Query: 789 LDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATAR 848
L ++ + S+ D D ++ +L+ +G+KV I + S+ A+A
Sbjct: 52 LPGGTGMMGSFKSYKDLD----TQIRSLQSRGIKVLQNIDDDV---SWQSSKPGGFASAA 104
Query: 849 QRFIEHVVKFLLKYQFDGLDLDWE--------------YPTCWQVNCDAGPDSDKESFGL 894
+ K++ DG+ LD E Y +G + +F
Sbjct: 105 AYGDAIKSIVIDKWKLDGISLDIEHSGAKPNPIPTFPGYAATGYNGWYSGSMAATPAFLN 164
Query: 895 FVRELHQAFKPHGLLLSAAVSPSKQVINAAYD-------VKALSESLDWISVMTYDYH-- 945
+ EL + F A + + I + D ++ + ++I + +Y +
Sbjct: 165 VISELTKYFGTT------APNNKQLQIASGIDVYAWNKIMENFRNNFNYIQLQSYGANVS 218
Query: 946 -----GQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMPMY 995
+ T + + N + + K P++ GM +Y
Sbjct: 219 RTQLMMNYATGTNKIPASKMVF-GAYAEGGTNQANDVEVAKWTPTQGAKGGMMIY 272
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell,
amylase/xylanase inhibitory protein, hydrolase I; 1.29A
{Scadoxus multiflorus} PDB: 3o9n_A 3oih_A* 3hu7_A 3m7s_A*
3d5h_A*
Length = 273
Score = 60.4 bits (146), Expect = 1e-09
Identities = 35/186 (18%), Positives = 60/186 (32%), Gaps = 14/186 (7%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG 1213
W + + L + DS +VI GF + ++ + K
Sbjct: 9 WGQSFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHS-PKGLEPQIKHCQSKN 67
Query: 1214 VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLD---LDWEYPKCW 1270
VKV L+IGG YS ++S+ + ++ L +
Sbjct: 68 VKVLLSIGG----PAGPYS--LDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVLDGI 121
Query: 1271 QVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWI 1330
+ G S Q A+++ R + + L+AA P D + S D I
Sbjct: 122 DFHIEHGGPSQYQLLANILSSFRLS--GSEFALTAA--PQCVYPDPNLGTVINSATFDAI 177
Query: 1331 SVMTYD 1336
V Y+
Sbjct: 178 WVQFYN 183
Score = 54.3 bits (130), Expect = 8e-08
Identities = 38/223 (17%), Positives = 66/223 (29%), Gaps = 33/223 (14%)
Query: 776 TDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLG 835
+ +++ GF S ++ + K VKV L+IGG
Sbjct: 24 SGNYAYVIIGFLNTFGGGQTPALDISGHS-PKGLEPQIKHCQSKNVKVLLSIGGP----A 78
Query: 836 GKYSRLVNSATARQRFIEHVVKFLLKYQFDGLD---LDWEYPTCWQVNCDAGPDSDKESF 892
G YS ++S ++ K L + + + G S +
Sbjct: 79 GPYS--LDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVLDGIDFHIEHGGPSQYQLL 136
Query: 893 GLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKT 952
+ + L+AA P + S + D I V Y+
Sbjct: 137 ANILSSFRLSGS--EFALTAA--PQCVYPDPNLGTVINSATFDAIWVQFYNN-------- 184
Query: 953 GHVAPLYEHPDDDFFYFNANFTMNYWMK--KGAPSRKLVMGMP 993
P + NA+ MN W + A + K+ +G P
Sbjct: 185 ---------PQCSYSASNASALMNAWKEWSMKARTDKVFLGFP 218
>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation,
glycopr chitin-binding, chitin degradation, CAZY,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A*
2uy4_A* 2uy5_A*
Length = 294
Score = 60.1 bits (145), Expect = 2e-09
Identities = 29/216 (13%), Positives = 63/216 (29%), Gaps = 39/216 (18%)
Query: 1144 KIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDN--- 1200
I Y+ + Q + L + +S + F + + +
Sbjct: 7 NIAVYWGQNSAGTQ---ESLATYCESSDADIFLLSFLNQFPTLGLNFANACSDTFSDGLL 63
Query: 1201 ---KFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFIL---- 1253
+ E + + G KV L++GG + S + F + +
Sbjct: 64 HCTQIAEDIETCQSLGKKVLLSLGGASGSYL------FSDDSQAETFAQTLWDTFGEGTG 117
Query: 1254 -------EHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAA 1306
DG D D E ++ G++ L +LR F +
Sbjct: 118 ASERPFDSAVVDGFDFDIENN-------------NEVGYSALATKLRTLFAEGTKQYYLS 164
Query: 1307 VSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWD 1342
+P D + + + ++D+ + Y+ +
Sbjct: 165 AAPQCPYPDASVGDLLENADIDFAFIQFYNNYCSVS 200
Score = 51.6 bits (123), Expect = 8e-07
Identities = 34/265 (12%), Positives = 69/265 (26%), Gaps = 55/265 (20%)
Query: 751 KIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDN--- 807
I Y+ + E + + F + A+ F +
Sbjct: 7 NIAVYWGQNSAGTQESLATYCE---SSDADIFLLSFLNQFPTLGLNFANACSDTFSDGLL 63
Query: 808 ---RFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHV--------- 855
+ E + T + G KV L++GG G Y + + + F + +
Sbjct: 64 HCTQIAEDIETCQSLGKKVLLSLGGA----SGSYL--FSDDSQAETFAQTLWDTFGEGTG 117
Query: 856 --VKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAA 913
+ DG D D E + + +L F +
Sbjct: 118 ASERPFDSAVVDGFDFDIENNN-------------EVGYSALATKLRTLFAEGTKQYYLS 164
Query: 914 VSPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANF 973
+P +A+ + +D+ + Y+ + F +
Sbjct: 165 AAPQCPYPDASVGDLLENADIDFAFIQFYNNYCSV--------------SGQFNWDTWLT 210
Query: 974 TMNYWMKKGAPSRKLVMGMPMYGQA 998
+ KL +G+P A
Sbjct: 211 YAQTVS--PNKNIKLFLGLPGSASA 233
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A* 1kqy_A*
1kqz_A*
Length = 273
Score = 59.0 bits (142), Expect = 3e-09
Identities = 39/228 (17%), Positives = 75/228 (32%), Gaps = 38/228 (16%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTD----QLVIKPHDTWADLD-NKFYEKVTA 1208
W + L + ++V F + Q+ + H A + +
Sbjct: 7 WGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRS 66
Query: 1209 LKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFIL----------EHNFD 1258
+ +G+KV L++GG Y+ + SQ ++ N L + D
Sbjct: 67 CQIQGIKVMLSLGG----GIGSYT--LASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 1259 GLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAY 1318
G+D D E+ + DL + L A + A +P D
Sbjct: 121 GIDFDIEHG-------------STLYWDDLARYLSAYSKQGKKVYLTA-APQCPFPDRYL 166
Query: 1319 DIPVMSENLDWISVMTY-DYHGQWDKKTGHVAPMYALPNDTTPTFNAN 1365
+ + D++ V Y + Q+ +G++ + N T + NA
Sbjct: 167 GTALNTGLFDYVWVQFYNNPPCQYS--SGNINNIINSWNRWTTSINAG 212
Score = 55.1 bits (132), Expect = 5e-08
Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 54/255 (21%)
Query: 761 WYRPGKGKYVPEDIRTDLCTHIVYGFAVLDSEN----LIIKAHDSWADFD-NRFYERVVT 815
W + G + + T +++ F + + H + A + +
Sbjct: 7 WGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRS 66
Query: 816 LKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLL----------KYQFD 865
+ +G+KV L++GG G Y+ + S + +++ L D
Sbjct: 67 CQIQGIKVMLSLGGG----IGSYT--LASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 866 GLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAY 925
G+D D E+ + + R L A+ G + +P +
Sbjct: 121 GIDFDIEHGS-------------TLYWDDLARYL-SAYSKQGKKVYLTAAPQCPFPDRYL 166
Query: 926 DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMK--KGA 983
+ D++ V Y+ P + N N +N W +
Sbjct: 167 GTALNTGLFDYVWVQFYNN-----------------PPCQYSSGNINNIINSWNRWTTSI 209
Query: 984 PSRKLVMGMPMYGQA 998
+ K+ +G+P +A
Sbjct: 210 NAGKIFLGLPAAPEA 224
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I), beta
alpha barrel (xylanase), HYD inhibitor-hydrolase complex;
HET: NAG; 1.70A {Triticum aestivum} SCOP: c.1.8.5 PDB:
1om0_A* 1te1_A*
Length = 274
Score = 55.4 bits (133), Expect = 4e-08
Identities = 38/250 (15%), Positives = 66/250 (26%), Gaps = 56/250 (22%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKG 1213
W R L DS + T V F + + D + + + KG
Sbjct: 12 WGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGHD-LSSVGADIKHCQSKG 70
Query: 1214 VKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILE------------HNFDGLD 1261
V V+L+IGG+ + S ++ H+ N DG+D
Sbjct: 71 VPVSLSIGGYGTGYS------LPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVD 124
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD----LLLSAAVSPSKAVIDNA 1317
L E+ + + L EL L L+A A
Sbjct: 125 LFLEHG------------TPADRYDVLALELAKHNIRGGPGKPLHLTAT--VRCGYPPAA 170
Query: 1318 YDIPVMSENL-DWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGA 1376
+ ++ + + + V TY+ S W +
Sbjct: 171 HVGRALATGIFERVHVRTYES-----------------DKWCNQNLGWEGSWDKWTA-AY 212
Query: 1377 DRKKVIFGMP 1386
+ G+
Sbjct: 213 PATRFYVGLT 222
Score = 50.8 bits (121), Expect = 1e-06
Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 56/231 (24%)
Query: 780 THIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGKYS 839
T + F + N S D + + + KGV VSL+IGG+ G YS
Sbjct: 31 TMVTMSFLDVFGANGKYHLDLSGHDLSS-VGADIKHCQSKGVPVSLSIGGY----GTGYS 85
Query: 840 RLVNSATARQRFIEHVVKFLL------------KYQFDGLDLDWEYPTCWQVNCDAGPDS 887
+ S + +H+ DG+DL E+ +
Sbjct: 86 --LPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAWLDGVDLFLEHG------------T 131
Query: 888 DKESFGLFVREL----HQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESL-DWISVMTY 942
+ + + EL + L L+A AA+ +AL+ + + + V TY
Sbjct: 132 PADRYDVLALELAKHNIRGGPGKPLHLTAT--VRCGYPPAAHVGRALATGIFERVHVRTY 189
Query: 943 DYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKGAPSRKLVMGMP 993
+ + + + W P+ + +G+
Sbjct: 190 ESDKWCN-----------------QNLGWEGSWDKWT-AAYPATRFYVGLT 222
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 7e-07
Identities = 55/344 (15%), Positives = 102/344 (29%), Gaps = 108/344 (31%)
Query: 8 IYIAALIAVSSSDVQRRQRSFYRDSVE--------GNQRDKAFRRDSVEALPLHSKLEFN 59
+ A IA + S SF+ + G + +A+ S+ L
Sbjct: 277 LVTAVAIAETDSW-----ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE------ 325
Query: 60 QAVENDEEG---MFGTKWIPLRSAIEKTLLPKERAEEHIPLRDAVERRPI-LH------- 108
++EN+E M + + ++ + + H+P VE I L
Sbjct: 326 DSLENNEGVPSPMLSISNLT-QEQVQDYV---NKTNSHLPAGKQVE---ISLVNGAKNLV 378
Query: 109 ---SPKDNYRFMQQ------PGTKHQVVCYVEAKSAYRHRPATFNVKNVIPQICTHVIYA 159
P+ Y P Q ++ + R F+ +
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQ------SRIPFSERKLKFSNR------------- 419
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANPELKVYLAVKSNFVSITSDRESRLN 219
PV+ P + S L L A+ + L + VS + +
Sbjct: 420 ---FLPVA---SP-----------FHSHL-LVPASDLINKDLVKNN--VSFNA---KDIQ 456
Query: 220 FISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDL-ESIANERSDFSTFIQELSSTLRRNN 278
V +D FDG DL L+ + + + I + T + +T
Sbjct: 457 I--PV---YDT--FDGSDLR----VLSGSISERIVDCIIRLPVKWET-TTQFKAT----- 499
Query: 279 YQLTLTSPGVIDRKTSLVDISVVAPLVDLILLKSFNNDHMDDEV 322
+ L PG L + V +I+ + + + DD+
Sbjct: 500 HILDF-GPGGASGLGVLTHRNKDGTGVRVIVAGTLDIN-PDDDY 541
Score = 52.7 bits (126), Expect = 1e-06
Identities = 49/317 (15%), Positives = 86/317 (27%), Gaps = 117/317 (36%)
Query: 724 EWVWHPPTEPTTTHISVTEKS-PLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHI 782
EW+ +P P ++ S PL ++ Y G + P ++R+ L
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV--TAKLLG---FTPGELRSYLKGAT 271
Query: 783 VYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIGGWNDSLGGK--YSR 840
+ ++ + + I DSW F+ V +K + V IG + Y
Sbjct: 272 GHSQGLVTA--VAIAETDSWES----FFVSV----RKAITVLFFIG-----VRCYEAYPN 316
Query: 841 LVNSATARQRFIEH---------VVKFLLKYQFDGLDLDWEYPTCWQVNCD--------- 882
+ + +E+ + L + + N
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSIS--------NLTQEQVQDYVNKTNSHLPAGKQVEI 368
Query: 883 -----------AGPDSDKESFGLFVRELH------QA---F---KP-------------H 906
+GP L +R+ Q+ F K H
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFH 428
Query: 907 GLLLSAAVSPSKQ-------VINAA------Y------DVKALSESL-----DWISVMTY 942
LL A + NA Y D++ LS S+ D I +
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488
Query: 943 DYHGQWDKKTG----HV 955
W+ T H+
Sbjct: 489 K----WETTTQFKATHI 501
Score = 50.0 bits (119), Expect = 7e-06
Identities = 99/695 (14%), Positives = 168/695 (24%), Gaps = 284/695 (40%)
Query: 812 RVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDW 871
R +TL ++ L + + S+L +++F + L +G D
Sbjct: 7 RPLTLSHGSLEHVLLV---PTASFFIASQL------QEQFNKI-----LPEPTEGFAADD 52
Query: 872 EYPTCWQVNCDAGPDSDKESFGLFV----RELHQA-FKPHGLLLSAAVSPSKQVINAAY- 925
E P + E G F+ + + +L+ + Y
Sbjct: 53 E------------PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCL----TEFENCYL 96
Query: 926 ---DVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKG 982
D+ AL+ L + T + K Y A K
Sbjct: 97 EGNDIHALAAKLLQENDTTLVKTKELIKN----------------YITARIMAKRPFDKK 140
Query: 983 APSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPG-GNYESTT 1041
+ S A A G + + + G G GN +
Sbjct: 141 SNS------------AL---------FRAVGEGN------AQLVAIFG---GQGNTDDYF 170
Query: 1042 EE----YKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
EE Y+ T + + T TT
Sbjct: 171 EELRDLYQ------------------------TYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 1098 TTRPKPITTIK--PKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWY 1155
+ + ++ P+ P + P+ S ++ A Y
Sbjct: 207 KVFTQGLNILEWLENPSN---------TPDKDYLLSIPI---S----CPLIG-VIQLAHY 249
Query: 1156 ----RQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKK 1211
+ G + P ++ S L + ++ + I D+W + +T L
Sbjct: 250 VVTAKLLG--FTPGELRSYLKGATGHSQGLVTA--VAIAETDSWESFFVSVRKAITVLFF 305
Query: 1212 KGVKVT---------------------------LAIGGWNDSAGNKYSRLVNSQQARSK- 1243
GV+ L+I Y NS K
Sbjct: 306 IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQ 365
Query: 1244 -FIAHVVN----FILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAA--- 1295
I+ +VN ++ GP G +++ +A
Sbjct: 366 VEIS-LVNGAKNLVV----------------------SGPPQSLYGLNLTLRKAKAPSGL 402
Query: 1296 -----------------FNP-----HDLLLSAAVS------PSKAVIDNAYD--IPV--- 1322
F P H LL A V NA D IPV
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT 462
Query: 1323 --------MSENL-----DWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLH 1369
+S ++ D I + W+ T T H
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLPVK----WETTT-----------QFKAT-------H 500
Query: 1370 YWVSHGADRKKVIFGMPMYGQSF---TLADKNKNG 1401
+ FG P G + L +NK+G
Sbjct: 501 I----------LDFG-P--GGASGLGVLTHRNKDG 522
Score = 43.9 bits (103), Expect = 5e-04
Identities = 37/262 (14%), Positives = 71/262 (27%), Gaps = 97/262 (37%)
Query: 160 YAAIDPVSRALIPEDLEYDVIKGGYKSFLGLKEANP-ELKVYLAVKSNFVSITSDRESRL 218
Y ++ + + G+ S L + NP L ++ F + R
Sbjct: 1636 YKT-SKAAQDVWNRADNHFKDTYGF-SILDIVINNPVNLTIH------FGGEKG-KRIRE 1686
Query: 219 NFISSVLEMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTLRRNN 278
N+ + + E +D +K + E ++ S F + LS+T
Sbjct: 1687 NYSAMIFETI-------VDGKLKTEKIFKEINEHSTSY-----TFRSEKGLLSAT---QF 1731
Query: 279 YQ--LTLTS---------PGVIDRK-----------TSLVDISVVAPLVDLILL------ 310
Q LTL G+I +L ++ V + L+ +
Sbjct: 1732 TQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGM 1791
Query: 311 ---------------------------KSFNNDHMDDEVVPVKPNTKVNIQVTSTIANFN 343
SF+ + + V V T ++ I N+N
Sbjct: 1792 TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVE----IVNYN 1847
Query: 344 NIESAVYNWIKKGARPEQIIIG 365
+Q +
Sbjct: 1848 -------------VENQQYVAA 1856
Score = 42.0 bits (98), Expect = 0.002
Identities = 83/547 (15%), Positives = 149/547 (27%), Gaps = 163/547 (29%)
Query: 216 SRLNFISSVL-EMFDMYKFDGLDLNVKDPALNDEDDDDLESIANERSDFSTFIQELSSTL 274
+ FI+S L E F+ + +P DD+ + A F ++ L
Sbjct: 24 TASFFIASQLQEQFNK--------ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPS 75
Query: 275 RRNNYQLTLTSPGVIDRKTSLV----------DI-SVVAPL---VDLILLKS-------F 313
+ + L L DI ++ A L D L+K+
Sbjct: 76 KVGQFDQVL--------NLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI 127
Query: 314 NNDHMDDEVVPVKPN----TKVNIQVTSTIANFN---NIES---------AVYN-----W 352
M K N V +A F N + Y+
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 353 IKKGAR-----PEQIIIGIPFFGKSYR----LFNRS-----EYGLGATVKGPGTEGKYTQ 398
IK A + F + L N S +Y L + P Q
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG--VIQ 245
Query: 399 MPGYLAFFEVCNKFKDKTWRHFTDSNGEP-------FMVKKDEWITYENNDSIRRKMNYI 451
+ Y+ ++ + + + G + + D W ++ + I
Sbjct: 246 LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR-----KAI 300
Query: 452 KDRHLGGAMLWTLDLDDFRGFCGQK-YPLLSAVVSNLQPDME------TPMKSTT-ESQS 503
+ + G + YP S S L+ +E +PM S + +Q
Sbjct: 301 T------VLFFI-------GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE 347
Query: 504 QELELVEDELTTIRTQRPTRPATSSWWTPITTTESTQEEYIPETCVNGDYLPDPDDCRSF 563
Q V+D + + P I + VNG ++
Sbjct: 348 Q----VQDYVNKTNSHLPAGKQV----------------EI--SLVNGA--------KNL 377
Query: 564 LICSH--------GNLLKQSCGPSL-----LWNAKKKLCDWSY-NVQCSFQSNIVRFSLK 609
++ L K L ++ +K + V F S+++ +
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD 437
Query: 610 PKDESCQEGEFAAYPSDCNKYQYCIW-GS-YQV--ASCSPGLYWNDKM--KTCDWPYRTK 663
++ + + D Y + GS +V S S + D + W
Sbjct: 438 LINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLPVKWE---T 492
Query: 664 CKQTSAT 670
Q AT
Sbjct: 493 TTQFKAT 499
Score = 41.2 bits (96), Expect = 0.003
Identities = 55/345 (15%), Positives = 88/345 (25%), Gaps = 134/345 (38%)
Query: 717 AWTPNPTEWVWHPPTEPTTT---------HIS-VTEKSPLDQYFKIV----CYFTNWAWY 762
P PTE EPTT ++S + E S + Q+ +++ F N
Sbjct: 39 KILPEPTEGFAAD-DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFEN---- 93
Query: 763 RPGKGKYVP-EDIRTDLCTHIVYGFAVLDSENLIIKAHDSWADFDNRFYERVVTLKKKGV 821
Y+ DI + L +IK + + K+
Sbjct: 94 -----CYLEGNDIHALAAKLLQENDTTLVKTKELIKN----------YITARIMAKRPFD 138
Query: 822 KVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNC 881
K S S L + + + F G Q
Sbjct: 139 KKS-------------NSALFRAVGEGN------AQLVA--IFGG-----------Q--- 163
Query: 882 DAGPDSD--KESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISV 939
G D +E L R+L+Q + V L I
Sbjct: 164 --GNTDDYFEE---L--RDLYQTYHVL--------------------VGDL------IKF 190
Query: 940 MTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKK--GAPSRKLVMG----MP 993
++ L D F + W++ P + ++ P
Sbjct: 191 SA-----------ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 994 MYGQAFSLAN----SNDHGLNAAAPGAGVHPLLSTITEVLGHGPG 1034
+ G LA+ + G PG + L T GH G
Sbjct: 240 LIG-VIQLAHYVVTAKLLGFT---PGE-LRSYLKGAT---GHSQG 276
Score = 31.6 bits (71), Expect = 3.0
Identities = 55/368 (14%), Positives = 92/368 (25%), Gaps = 163/368 (44%)
Query: 1131 PKPVIPPSTKDEFKIVCYFTNWAWYRQSGGKYLPSDIDSDLCTHVIYG----FAVL---- 1182
+ K + I Y T A R + +S L V G A+
Sbjct: 109 LQENDTTLVKTKELIKNYIT--A--RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 1183 DTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARS 1242
+TD D + +L Y+ L +G + S L+ +
Sbjct: 165 NTD-------DYFEEL-RDLYQTYHVL----------VGDLIKFSAETLSELIRTTLDAE 206
Query: 1243 KFIAHVVNFILEHNFDGLDL-DW-EYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHD 1300
K GL++ +W E P P D
Sbjct: 207 KVFTQ-----------GLNILEWLENPS-------NTP-------------------DKD 229
Query: 1301 LLLSAAVS-P----------------------------------SKAVI----------- 1314
LLS +S P S+ ++
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 1315 DNAYDIPVMS-ENLDWISVMTYDYHGQWDKKTGHVAPMYALP----------NDTTPT-- 1361
++ + + L +I V P +LP N+ P+
Sbjct: 290 ESFFVSVRKAITVLFFIGV-----RCY------EAYPNTSLPPSILEDSLENNEGVPSPM 338
Query: 1362 -----------------FNANYSLHYWVS---HGADRKKVIFGMP--MYGQSFTLAD-KN 1398
N++ V + V+ G P +YG + TL K
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 1399 KNGLNSQT 1406
+GL+ Q+
Sbjct: 399 PSGLD-QS 405
Score = 30.8 bits (69), Expect = 5.3
Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 41/119 (34%)
Query: 990 MGMPMYGQAFSLANS-----NDHGLNAAAPGAGVHPLLSTITEVLGHGP-------GG-- 1035
MGM +Y + A ++H + +I +++ + P GG
Sbjct: 1631 MGMDLY-KTSKAAQDVWNRADNHFKDT---------YGFSILDIVINNPVNLTIHFGGEK 1680
Query: 1036 ------NYES----TTEEYKPTSEESKPTTVSTSTVVTTEEPE----QTE--EP-ITTT 1077
NY + T + K +E+ ST T + T+ +P +T
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM 1739
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 50.9 bits (121), Expect = 1e-06
Identities = 36/204 (17%), Positives = 66/204 (32%), Gaps = 39/204 (19%)
Query: 1157 QSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVI-------KPHDTWADLDNKFYEKVTAL 1209
Q L ++ V F ++ + + + ++
Sbjct: 13 QREDGLLRDTCKTNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNPCSFLESQIKEC 72
Query: 1210 KKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFIL---------EHNFDGL 1260
++ GVKV LA+GG + S ++ + L + DG+
Sbjct: 73 QRMGVKVFLALGGPKGTYS------ACSADYAKDLAEYLHTYFLSERREGPLGKVALDGI 126
Query: 1261 DLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFN--PHDLLLSAAVSPSKAVIDNAY 1318
D + P D+ + +L++EL + LLSAA P D
Sbjct: 127 HFDIQKP------------VDELNWDNLLEELYQIKDVYQSTFLLSAA--PGCLSPDEYL 172
Query: 1319 DIPVMSENLDWISVMTY-DYHGQW 1341
D + + + D+I V Y D Q+
Sbjct: 173 DNAIQTRHFDYIFVRFYNDRSCQY 196
Score = 47.1 bits (111), Expect = 3e-05
Identities = 39/235 (16%), Positives = 70/235 (29%), Gaps = 49/235 (20%)
Query: 776 TDLCTHIVYGFAVLD-------SENLIIKAHDSWADFDNRFYERVVTLKKKGVKVSLAIG 828
T+ + F L S + + ++ ++ GVKV LA+G
Sbjct: 25 TNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNPCSFLESQIKECQRMGVKVFLALG 84
Query: 829 GWNDSLGGKYSRLVNSATARQRFIEHVVKFLL---------KYQFDGLDLDWEYPTCWQV 879
G G YS SA + E++ + L K DG+ D + P
Sbjct: 85 GP----KGTYS--ACSADYAKDLAEYLHTYFLSERREGPLGKVALDGIHFDIQKP----- 133
Query: 880 NCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAVSPSKQVINAAYDVKALSESLDWISV 939
D+ ++ + EL+Q + + +P + D + D+I V
Sbjct: 134 -------VDELNWDNLLEELYQIKDVYQSTFLLSAAPGCLSPDEYLDNAIQTRHFDYIFV 186
Query: 940 MTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKKG-APSRKLVMGMP 993
Y+ Y + W K + L + +P
Sbjct: 187 RFYNDRSC----------QYSTGNIQRIR----NAWLSWTKSVYPRDKNLFLELP 227
>2grx_C Protein TONB; beta barrel, outer membrane, heterocomplex,
inter-protein beta sheet, protein-protein, metal
transport; HET: GCN KDO GMH FTT DAO MYR FCI; 3.30A
{Escherichia coli} SCOP: d.212.1.2 PDB: 1xx3_A
Length = 229
Score = 48.9 bits (116), Expect = 3e-06
Identities = 21/101 (20%), Positives = 29/101 (28%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTT 1098
S + + + + +S V+ P Q T PP
Sbjct: 3 SHHHHHHSSGLVPRGSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPE 62
Query: 1099 TRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
P+PI + V KP KPKP VK P
Sbjct: 63 PEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRD 103
Score = 44.3 bits (104), Expect = 1e-04
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 2/108 (1%)
Query: 1033 PGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPT 1092
P G++ S + + ++P +V+ T E P+ + P P+PP
Sbjct: 15 PRGSHMSVHQVIEL-PAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPK 73
Query: 1093 TTSTTTTRPKPITTIKPKPTT-VKPKPTTTVKPKPTTVKPKPVIPPST 1139
+PKP KPKP V+ +P VKP +
Sbjct: 74 EAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFENTAPA 121
Score = 40.5 bits (94), Expect = 0.002
Identities = 12/65 (18%), Positives = 19/65 (29%)
Query: 1076 TTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVI 1135
+ S + P P S T P + + +P +P+P PK
Sbjct: 17 GSHMSVHQVIELPAPAQPISVTMVTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAP 76
Query: 1136 PPSTK 1140
K
Sbjct: 77 VVIEK 81
Score = 36.6 bits (84), Expect = 0.041
Identities = 11/94 (11%), Positives = 19/94 (20%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
E + VV E + K P + +P
Sbjct: 43 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKR 102
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+KP + T + T+
Sbjct: 103 DVKPVESRPASPFENTAPARLTSSTATAATSKPV 136
Score = 36.2 bits (83), Expect = 0.051
Identities = 13/96 (13%), Positives = 23/96 (23%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
T + +P EPE EPI ++PKP +
Sbjct: 40 VTPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQ 99
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKD 1141
+ + P + ++K
Sbjct: 100 PKRDVKPVESRPASPFENTAPARLTSSTATAATSKP 135
Score = 36.2 bits (83), Expect = 0.056
Identities = 14/95 (14%), Positives = 20/95 (21%), Gaps = 5/95 (5%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPI 1104
V EPE EP +PKP K
Sbjct: 43 ADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK-----PKPVKKVQ 97
Query: 1105 TTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
K V+ +P + + +T
Sbjct: 98 EQPKRDVKPVESRPASPFENTAPARLTSSTATAAT 132
Score = 34.7 bits (79), Expect = 0.14
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTR 1100
E +P E V+ +P+ +P + ++
Sbjct: 58 VVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDVKPVESRPASPFEN 117
Query: 1101 PKPITTIKPKPTTVKPKPTTTVKPKPT-TVKPKPVIPP 1137
P T KP T+V P + +P P
Sbjct: 118 TAPARLTSSTATAATSKPVTSVASGPRALSRNQPQYPA 155
Score = 32.8 bits (74), Expect = 0.64
Identities = 10/96 (10%), Positives = 18/96 (18%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
++ E E P K P +PK
Sbjct: 45 LEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKPKPVKKVQEQPKRDV 104
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKD 1141
+ T + +T P ++
Sbjct: 105 KPVESRPASPFENTAPARLTSSTATAATSKPVTSVA 140
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels,
cell WALL, peptidoglycan-anchor, secreted, hydrolase;
HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A
Length = 937
Score = 49.6 bits (117), Expect = 8e-06
Identities = 13/105 (12%), Positives = 26/105 (24%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
+ E T+E K + E+ E T + ++ ++
Sbjct: 36 LVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAK 95
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
+ KPK + KP P+ +
Sbjct: 96 PEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEAN 140
Score = 46.5 bits (109), Expect = 7e-05
Identities = 29/309 (9%), Positives = 68/309 (22%), Gaps = 47/309 (15%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
++ E + E + S + E ++ K + T +
Sbjct: 51 QNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA 110
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWYRQ 1157
+PK + KP + + + + E + + + +
Sbjct: 111 EAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170
Query: 1158 SGGKYLPSDIDSDLCTHVI----YGFAVLDTDQLVIKPHDTWADLDNKFYEK-------- 1205
+ D + + L ++ + N +
Sbjct: 171 LLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSNTNSKAKDHASVGGEE 230
Query: 1206 ---------------------------VTALKKKGVKVTLAIGGWNDSAGNKYSRLVN-- 1236
+ A + GV V + ++ R
Sbjct: 231 FKAYAFDYWQYLDSMVFWEGLVPTPDVIDAGHRNGVPVYGTLFFNWSNSIADQERFAEAL 290
Query: 1237 --SQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRA 1294
+V+ + +DG ++ E D + + F KE A
Sbjct: 291 KQDADGSFPIARKLVDMAKYYGYDGYFINQETT----GDLVKPLGEKMRQFMLYSKEYAA 346
Query: 1295 AFNPHDLLL 1303
N
Sbjct: 347 KVNHPIKYS 355
Score = 41.1 bits (95), Expect = 0.003
Identities = 13/112 (11%), Positives = 21/112 (18%), Gaps = 5/112 (4%)
Query: 1031 HGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP 1090
H Y E P + + VS + E E
Sbjct: 12 HQLENLYFQGEETAVPENSGANTELVSGES-----EHSTNEADKQNEGEHARENKLEKAE 66
Query: 1091 PTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDE 1142
T++ T P + K + D+
Sbjct: 67 GVATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSAEAKPKSDK 118
Score = 36.5 bits (83), Expect = 0.081
Identities = 28/271 (10%), Positives = 50/271 (18%), Gaps = 33/271 (12%)
Query: 667 TSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWV 726
SA E+ + + KP + E T + ++ V
Sbjct: 91 ASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDV 150
Query: 727 WHPPTEPTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCTHIVYGF 786
+ ++ G +
Sbjct: 151 PKNTEKTLKPKEIKFNSWEELLKWEPGARED--DAINRGSVVLASRRTGHLVNEKASKEA 208
Query: 787 AVLDSENLIIKAHDSWADFDNRFYERVVTL-----------------------KKKGVKV 823
V N KA D + F + GV V
Sbjct: 209 KVQALSNTNSKAKDHASVGGEEFKAYAFDYWQYLDSMVFWEGLVPTPDVIDAGHRNGVPV 268
Query: 824 SLAIGGWNDSLGGKYSRLVN----SATARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQV 879
+ + R A +V Y +DG ++ E
Sbjct: 269 YGTLFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGYDGYFINQETT----G 324
Query: 880 NCDAGPDSDKESFGLFVRELHQAFKPHGLLL 910
+ F L+ +E
Sbjct: 325 DLVKPLGEKMRQFMLYSKEYAAKVNHPIKYS 355
Score = 29.9 bits (66), Expect = 8.6
Identities = 6/72 (8%), Positives = 16/72 (22%)
Query: 665 KQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTE 724
+ E + + + + T EA T + ++
Sbjct: 46 NEADKQNEGEHARENKLEKAEGVATASETASPASNEAATTETAEAASAAKPEEKASEVVA 105
Query: 725 WVWHPPTEPTTT 736
+P +
Sbjct: 106 ETPSAEAKPKSD 117
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A
{Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*
Length = 310
Score = 47.5 bits (112), Expect = 2e-05
Identities = 36/245 (14%), Positives = 67/245 (27%), Gaps = 47/245 (19%)
Query: 1155 YRQSGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGV 1214
+ + P + C +Y +L+ H D + + G
Sbjct: 37 FPDMSPGHWPGSNFGNQCDGSVYVTNDGVVTKLLSGCHQIMED--------IPICQAAGK 88
Query: 1215 KVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILE-------------HNFDGLD 1261
KV L+IGG S + S+ + F + DG D
Sbjct: 89 KVLLSIGGA---YPPDQS--ILSEDSAVAFATFLWGAFGPVAEGWEGPRPFGDVVVDGFD 143
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIP 1321
D E + ++ LSAA P + D
Sbjct: 144 FDIE----------HNGGFGYATMVNTFRQYFNQVPERKFYLSAA--PQCIIPDAQLSDA 191
Query: 1322 VMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKV 1381
+ + D+I + Y+ + + + TFN + + + + K+
Sbjct: 192 IFNAAFDFIWIQYYNTAACSA---------KSFIDTSLGTFNFDAWVTVLKASASKDAKL 242
Query: 1382 IFGMP 1386
G+P
Sbjct: 243 YVGLP 247
Score = 44.4 bits (104), Expect = 2e-04
Identities = 34/204 (16%), Positives = 57/204 (27%), Gaps = 39/204 (19%)
Query: 808 RFYERVVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHV------------ 855
+ E + + G KV L+IGG S + S + F +
Sbjct: 75 QIMEDIPICQAAGKKVLLSIGGAY---PPDQS--ILSEDSAVAFATFLWGAFGPVAEGWE 129
Query: 856 -VKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPHGLLLSAAV 914
+ DG D D E+ + R+ LSAA
Sbjct: 130 GPRPFGDVVVDGFDFDIEHNG----------GFGYATMVNTFRQYFNQVPERKFYLSAA- 178
Query: 915 SPSKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFT 974
P + +A + + D+I + Y+ D FN +
Sbjct: 179 -PQCIIPDAQLSDAIFNAAFDFIWIQYYNTAACS---------AKSFIDTSLGTFNFDAW 228
Query: 975 MNYWMKKGAPSRKLVMGMPMYGQA 998
+ + KL +G+P A
Sbjct: 229 VTVLKASASKDAKLYVGLPASETA 252
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl
hydrolase family 18, equilibrium sedimentation, X-RAY;
1.73A {Parkia platycephala}
Length = 271
Score = 45.8 bits (108), Expect = 5e-05
Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 18/192 (9%)
Query: 1154 WYRQSGGKYLPSDIDSDLCTHVIYGFAVL----DTDQLVIKPHDTWADLDNKFYEK-VTA 1208
W + G L S +S L V F Q+ + H A+ + + A
Sbjct: 7 WGQNGGEGTLTSTCESGLYQIVNIAFLSQFGGGRRPQINLAGHCDPANNGCRTVSDGIRA 66
Query: 1209 LKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPK 1268
+++G+KV L+IGG YS +S Q ++ N L L
Sbjct: 67 CQRRGIKVMLSIGG----GAGSYSL--SSVQDARSVADYIWNNFLGGRSSSRPLGDAVLD 120
Query: 1269 CWQVDCKQGPASDKQGFADLIKELRAAFNP-HDLLLSAAVSPSKAVIDNAYDIPVMSENL 1327
D + G + L + L + LSAA P D + + + +
Sbjct: 121 GVDFDIEHGG----AYYDALARRLSEHNRGGKKVFLSAA--PQCPFPDQSLNKALSTGLF 174
Query: 1328 DWISVMTYDYHG 1339
D++ V Y+
Sbjct: 175 DYVWVQFYNNPQ 186
Score = 43.1 bits (101), Expect = 3e-04
Identities = 34/197 (17%), Positives = 65/197 (32%), Gaps = 49/197 (24%)
Query: 813 VVTLKKKGVKVSLAIGGWNDSLGGKYSRLVNSATARQRFIEHVVKFLL----------KY 862
+ +++G+KV L+IGG G YS +S + +++ L
Sbjct: 64 IRACQRRGIKVMLSIGGG----AGSYSL--SSVQDARSVADYIWNNFLGGRSSSRPLGDA 117
Query: 863 QFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKP-HGLLLSAAVSPSKQVI 921
DG+D D E+ + R L + + + LSAA P
Sbjct: 118 VLDGVDFDIEHGGAYYDA--------------LARRLSEHNRGGKKVFLSAA--PQCPFP 161
Query: 922 NAAYDVKALSESLDWISVMTYDYHGQWDKKTGHVAPLYEHPDDDFFYFNANFTMNYWMKK 981
+ + + + D++ V Y+ + N + N W
Sbjct: 162 DQSLNKALSTGLFDYVWVQFYNNPQC--------------EFNSGNPSNFRNSWNKWTS- 206
Query: 982 GAPSRKLVMGMPMYGQA 998
+ + K +G+P +A
Sbjct: 207 -SFNAKFYVGLPASPEA 222
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface
adhesin WALL, peptidoglycan-anchor, cell adhesion; HET:
PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Length = 497
Score = 46.0 bits (107), Expect = 9e-05
Identities = 14/103 (13%), Positives = 20/103 (19%)
Query: 1034 GGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTT 1093
+ + + V + + + P T
Sbjct: 388 AIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVT 447
Query: 1094 TSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIP 1136
T KP KP T KP V P P
Sbjct: 448 KEKPTPPVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRL 490
Score = 41.8 bits (96), Expect = 0.002
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 2/84 (2%)
Query: 1063 TTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPK--PITTIKPKPTTVKPKPTT 1120
T+ + T K+P + + +T KP P PT
Sbjct: 403 TSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTK 462
Query: 1121 TVKPKPTTVKPKPVIPPSTKDEFK 1144
+KP PV P K+
Sbjct: 463 PTYETEKPLKPAPVAPNYEKEPTP 486
Score = 39.5 bits (90), Expect = 0.008
Identities = 15/102 (14%), Positives = 23/102 (22%)
Query: 1037 YESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST 1096
+ + TV T T + +
Sbjct: 376 SSDAPNSWYGAGAIKMSGPNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLN 435
Query: 1097 TTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPS 1138
R + + + T KPT KP T KP P +
Sbjct: 436 GKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVA 477
Score = 35.3 bits (79), Expect = 0.18
Identities = 12/101 (11%), Positives = 23/101 (22%), Gaps = 1/101 (0%)
Query: 1023 STITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTST- 1081
+G N ++ +++ + P T T
Sbjct: 394 PNNYVTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTP 453
Query: 1082 TTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTV 1122
P PT + +P P+ K T +
Sbjct: 454 PVKPTAPTKPTYETEKPLKPAPVAPNYEKEPTPPTRLEHHH 494
Score = 33.3 bits (74), Expect = 0.74
Identities = 12/81 (14%), Positives = 19/81 (23%), Gaps = 4/81 (4%)
Query: 657 DWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSG 716
T K+ + + + P +KPT + P T +
Sbjct: 418 PGKDNTDGKKPNIWYSLNGKIRAVNVPKVTKEKPTPPVKPTAPTKPTYETEKPLKPAPVA 477
Query: 717 AWTPNPTEWVWHPPTEPTTTH 737
PPT H
Sbjct: 478 PNYEKEPT----PPTRLEHHH 494
Score = 30.6 bits (67), Expect = 4.8
Identities = 15/69 (21%), Positives = 19/69 (27%), Gaps = 4/69 (5%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP 1133
+T TS T P T K K PK T KP P
Sbjct: 398 VTVGATSATNVMPVSDMPVVPGKDNTDGKKPNIWYSLNG----KIRAVNVPKVTKEKPTP 453
Query: 1134 VIPPSTKDE 1142
+ P+ +
Sbjct: 454 PVKPTAPTK 462
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 40.7 bits (94), Expect = 0.002
Identities = 23/211 (10%), Positives = 45/211 (21%), Gaps = 50/211 (23%)
Query: 546 ETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSNIVR 605
+C G + + CS + C+ ++
Sbjct: 48 SSCPVGTFTRHENGIEKCHDCSQPC-----------------PWPMIEKLPCAALTDREC 90
Query: 606 FSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQV-----------ASCSPGLYWNDKMK 654
C G F + + C + C G C+ G + +
Sbjct: 91 T--------CPPGMFQSNAT-CAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSS 141
Query: 655 TCDWPYRTKCK------QTSATTTSEQV--PKPTKKPTKPTKKPTTTTEYNPPEATTKPS 706
T C T ++ V P+ + T T +
Sbjct: 142 VMKCKAYTDCLSQNLVVIKPGTKETDNVCGTLPSFSSSTSPSPGTAIFPRPEHMETHEVP 201
Query: 707 TTTSTTTDSGAWTPNPTEWVWHPPTEPTTTH 737
++T + N + P
Sbjct: 202 SSTYVPKGMNSTESNSS-----ASVRPKVLS 227
>2vtf_A Endo-beta-N-acetylglucosaminidase; hydrolase, family 85,
glycosidase, carbohydrat binding; HET: B3P PGE; 1.79A
{Arthrobacter protophormiae} PDB: 3fhq_A* 3fha_A*
Length = 626
Score = 40.9 bits (95), Expect = 0.003
Identities = 13/124 (10%), Positives = 33/124 (26%), Gaps = 21/124 (16%)
Query: 800 DSWADFDNRFYERVVTL---------KKKGVKVSLAI----GGWNDSLGGKYSRLVNSAT 846
D + E ++ + GV + + + L L
Sbjct: 93 DLMVYWAGSAGEGIIVPPSADVIDASHRNGVPILGNVFFPPTVYGGQLEWLEQMLEQEED 152
Query: 847 ARQRFIEHVVKFLLKYQFDGLDLDWEYPTCWQVNCDAGPDSDKESFGLFVRELHQAFKPH 906
+ +++ Y FDG ++ + + E+ F+ L +
Sbjct: 153 GSFPLADKLLEVADYYGFDGWFINQQTEG--------ADEGTAEAMQAFLVYLQEQKPEG 204
Query: 907 GLLL 910
++
Sbjct: 205 MHIM 208
Score = 34.0 bits (77), Expect = 0.40
Identities = 11/125 (8%), Positives = 32/125 (25%), Gaps = 22/125 (17%)
Query: 1179 FAVLDTDQLVIKPHDTWADLDNKFYEKVTALKKKGVKV--TLAIGGWNDSAGNKYSR--L 1234
+A + +++ P D A + GV + + ++ L
Sbjct: 98 WAGSAGEGIIVPPSADVID----------ASHRNGVPILGNVFFPPTVYGGQLEWLEQML 147
Query: 1235 VNSQQARSKFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRA 1294
+ ++ + FDG ++ + + + + L+
Sbjct: 148 EQEEDGSFPLADKLLEVADYYGFDGWFINQQ--------TEGADEGTAEAMQAFLVYLQE 199
Query: 1295 AFNPH 1299
Sbjct: 200 QKPEG 204
>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion,
viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A
{Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A*
Length = 703
Score = 40.7 bits (95), Expect = 0.004
Identities = 15/99 (15%), Positives = 24/99 (24%), Gaps = 3/99 (3%)
Query: 1049 EESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTST---TTTRPKPIT 1105
+ + PT+ T V + T PKP T RP
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDN 60
Query: 1106 TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFK 1144
+ +K + T PP+ +
Sbjct: 61 ATVAAGHATLREHLRDIKAENTDANFYVCPPPTGATVVQ 99
Score = 33.4 bits (76), Expect = 0.63
Identities = 10/91 (10%), Positives = 19/91 (20%), Gaps = 3/91 (3%)
Query: 1032 GPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP 1091
PG + P + + + ++ ++ + P T
Sbjct: 10 TPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNAT---VAAG 66
Query: 1092 TTTSTTTTRPKPITTIKPKPTTVKPKPTTTV 1122
T R P TV
Sbjct: 67 HATLREHLRDIKAENTDANFYVCPPPTGATV 97
Score = 30.7 bits (69), Expect = 4.3
Identities = 13/64 (20%), Positives = 17/64 (26%), Gaps = 1/64 (1%)
Query: 682 KPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVT 741
P PT T A P+T A T +P P PT +
Sbjct: 1 DPAAPTSPGTPGVAAATQAANGGPATPAPPAL-GAAPTGDPKPKKNKKPKNPTPPRPAGD 59
Query: 742 EKSP 745
+
Sbjct: 60 NATV 63
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 39.6 bits (91), Expect = 0.009
Identities = 21/126 (16%), Positives = 33/126 (26%), Gaps = 23/126 (18%)
Query: 544 IPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSNI 603
C G P DC K +C P +L+N D + + SF +
Sbjct: 208 CHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGATC 267
Query: 604 VRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLY--WNDKMKTCDWPYR 661
V C + V +C Y D ++ C
Sbjct: 268 V--------------------KKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCK-KCE 306
Query: 662 TKCKQT 667
C++
Sbjct: 307 GPCRKV 312
Score = 38.1 bits (87), Expect = 0.026
Identities = 19/145 (13%), Positives = 31/145 (21%), Gaps = 14/145 (9%)
Query: 530 WTPITTTESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLC 589
W I +++ + G C + G Q + C
Sbjct: 140 WRDIVSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRC 199
Query: 590 DWSYNVQCSFQSNIVRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYW 649
C C G SDC + + +C P + +
Sbjct: 200 RGKSPSDCCHNQ-------------CAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLY 246
Query: 650 NDKMKTCDWPYRTKCKQTSATTTSE 674
N D AT +
Sbjct: 247 NPTTYQMD-VNPEGKYSFGATCVKK 270
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 37.9 bits (87), Expect = 0.020
Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 3/81 (3%)
Query: 1064 TEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVK 1123
Q ++ T + RP+ P + + K P KPKP K
Sbjct: 36 NGLASQIQQLTTAVSALVIGQATRPQNPRPRPPPRQKKQAP---KQPPKPKKPKPQEKKK 92
Query: 1124 PKPTTVKPKPVIPPSTKDEFK 1144
+P KP + K E
Sbjct: 93 KQPAKTKPGKRQRMALKLEAD 113
Score = 30.2 bits (67), Expect = 4.6
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 1086 KRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPV 1134
++ K +PKP K +P KP + K + V
Sbjct: 70 RQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRLFDV 118
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 37.9 bits (87), Expect = 0.023
Identities = 16/108 (14%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Query: 1033 PGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPT 1092
T+ T + + T P +P T++ + + P
Sbjct: 233 KALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSG 292
Query: 1093 TTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTK 1140
T + P T P P+P + P P+P +
Sbjct: 293 TWNPGRPEPGSAGTWNPGR----PEPGSAGTWNPGR--PEPGSAGTWN 334
Score = 34.8 bits (79), Expect = 0.19
Identities = 15/111 (13%), Positives = 28/111 (25%), Gaps = 1/111 (0%)
Query: 1030 GHGPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPK 1089
G + + P + ++ T RP+
Sbjct: 254 ARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPE 313
Query: 1090 PPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKP-KPTTVKPKPVIPPST 1139
P + + RP+P + P +P T P +P S+
Sbjct: 314 PGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNTGSS 364
Score = 33.3 bits (75), Expect = 0.65
Identities = 22/143 (15%), Positives = 41/143 (28%), Gaps = 5/143 (3%)
Query: 1000 SLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTS 1059
+L + G H ++++ G PG + T + S S +
Sbjct: 234 ALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSSIGNVNPGSYGPGSSGT 293
Query: 1060 TVVTTEEPEQTEEPITTTTTSTTTTTKRP---KPPTTTSTTTTRPKPITTIKPKPTTVKP 1116
EP + T P +P + + RP+P + P P
Sbjct: 294 WNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGR--P 351
Query: 1117 KPTTTVKPKPTTVKPKPVIPPST 1139
+P + + P S+
Sbjct: 352 EPGSAGTWNTGSSGSSSFRPDSS 374
Score = 32.9 bits (74), Expect = 0.89
Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 6/100 (6%)
Query: 1046 PTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPIT 1105
P +S+ E + T + + +P +
Sbjct: 218 PREFKSQLQEAPLEWKALLEMQQTKMVLETFGGDGHARGDSVSQGTGLAPGSPRKPGTSS 277
Query: 1106 TIKPKPTTVKPKPTTTVKP------KPTTVKPKPVIPPST 1139
P + P + T P T P P S
Sbjct: 278 IGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSA 317
Score = 31.8 bits (71), Expect = 1.9
Identities = 15/108 (13%), Positives = 29/108 (26%), Gaps = 5/108 (4%)
Query: 1032 GPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP 1091
PG ++ + P E ++ T RP+P
Sbjct: 282 NPGSYGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPG 341
Query: 1092 TTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+ + RP+P T + + +P + + P S
Sbjct: 342 SAGTWNPGRPEP-----GSAGTWNTGSSGSSSFRPDSSGHGNIRPSSP 384
Score = 31.4 bits (70), Expect = 2.3
Identities = 15/99 (15%), Positives = 25/99 (25%), Gaps = 3/99 (3%)
Query: 1032 GPGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPP 1091
PG + + P E P + + + EP + T P P
Sbjct: 295 NPGRPEPGSAGTWNPGRPE--PGS-AGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRP 351
Query: 1092 TTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
S T + +P + P T +
Sbjct: 352 EPGSAGTWNTGSSGSSSFRPDSSGHGNIRPSSPDWGTFR 390
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 37.6 bits (86), Expect = 0.030
Identities = 20/133 (15%), Positives = 35/133 (26%), Gaps = 8/133 (6%)
Query: 544 IPETCVNGDYLPDPDDCRSFLIC--SHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQS 601
+ ++ + + S C S N G K +C + +C +S
Sbjct: 144 VSSDFLSNMSMDFQNHLGSCQKCDPSCPNGSCWGAGEENCQKLTKIICAQQCSGRCRGKS 203
Query: 602 NIVRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYR 661
C G SDC + + +C P + +N D
Sbjct: 204 PS-----DCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMD-VNP 257
Query: 662 TKCKQTSATTTSE 674
AT +
Sbjct: 258 EGKYSFGATCVKK 270
>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune
system; NMR {Homo sapiens}
Length = 512
Score = 36.1 bits (83), Expect = 0.099
Identities = 17/166 (10%), Positives = 47/166 (28%), Gaps = 28/166 (16%)
Query: 1033 PGGNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTE-EPITTTTTSTTTTTKRPKPP 1091
Y ++++ P + + ++ ++ P + +++ T +P+
Sbjct: 189 RDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQPQAE 248
Query: 1092 TTTSTTTTRP---KPITTIKPKPTTVKPKPTTTVKPKPTTVKPKP-------VIPPSTKD 1141
+ + TT P + + K K + T P ++ P+ +D
Sbjct: 249 GSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQD 308
Query: 1142 EF-----KIVCYFTNWA-------WYRQSGG-----KYLPSDIDSD 1170
+ C+ W + + S+
Sbjct: 309 LWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSN 354
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 35.4 bits (80), Expect = 0.16
Identities = 18/161 (11%), Positives = 36/161 (22%), Gaps = 14/161 (8%)
Query: 546 ETCVNGDYLPDPDDCRSFLICSH---GNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSN 602
C G P DC C + C + ++N + ++N + ++ +
Sbjct: 208 RECAGGCSGPKDTDC---FACMNFNDSGACVTQCPQTFVYNPTTFQLEHNFNAKYTYGAF 264
Query: 603 IV-------RFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKT 655
V +C + + + C A G +T
Sbjct: 265 CVKKCPHNFVVDSSSCVRACPSSKMEVEENGIKMCKPCT-DICPKACDGIGTGSLMSAQT 323
Query: 656 CDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEY 696
D K + + E
Sbjct: 324 VDSSNIDKFINCTKINGNLIFLVTGIHGDPYNAIEAIDPEK 364
Score = 31.6 bits (70), Expect = 2.3
Identities = 19/143 (13%), Positives = 37/143 (25%), Gaps = 6/143 (4%)
Query: 530 WTPITTT---ESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKK 586
WT + +T + + + C S G SC
Sbjct: 450 WTTLFSTINQRIVIRDNRKAENCTAEGMVCNHLCSSDGCWGPGPDQCLSCRRFSRGRICI 509
Query: 587 KLCDWSYNVQCSFQSNIVRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQ---VASC 643
+ C+ F+++ + P+ E ++G + + C V C
Sbjct: 510 ESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCSHFKDGPNCVEKC 569
Query: 644 SPGLYWNDKMKTCDWPYRTKCKQ 666
GL + +C
Sbjct: 570 PDGLQGANSFIFKYADPDRECHP 592
Score = 31.2 bits (69), Expect = 2.8
Identities = 19/124 (15%), Positives = 33/124 (26%), Gaps = 10/124 (8%)
Query: 544 IPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSNI 603
+ + L + C H + + GP+ N + L QC +
Sbjct: 143 VRNPWPSNLTLVSTNGSSGCGRC-HKSCTGRCWGPTE--NHCQTLTRTVCAEQCDGRCYG 199
Query: 604 VRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQ---VASCSPGLYWNDKMKTCDWPY 660
S C G +DC C+ + V C +N + +
Sbjct: 200 PYVS-DCCHRECAGGCSGPKDTDC---FACMNFNDSGACVTQCPQTFVYNPTTFQLEHNF 255
Query: 661 RTKC 664
K
Sbjct: 256 NAKY 259
Score = 30.8 bits (68), Expect = 4.1
Identities = 14/87 (16%), Positives = 20/87 (22%), Gaps = 10/87 (11%)
Query: 590 DWSYNVQCSFQSNIVRFSLKPK------DESCQEGEFAAYPSDCNKYQYCIWGSYQVASC 643
W V+ + SN+ S +SC + N Q + C
Sbjct: 138 HWQDIVRNPWPSNLTLVSTNGSSGCGRCHKSCTGRC---WGPTENHCQTL-TRTVCAEQC 193
Query: 644 SPGLYWNDKMKTCDWPYRTKCKQTSAT 670
Y C C T
Sbjct: 194 DGRCYGPYVSDCCHRECAGGCSGPKDT 220
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 35.0 bits (79), Expect = 0.22
Identities = 29/254 (11%), Positives = 56/254 (22%), Gaps = 51/254 (20%)
Query: 547 TCVNGDYLPDPDDCRSFLICSHGNLLKQ---SCGPSLLWNAKKKLCDWSYNVQCSFQSNI 603
C G P DC + C H N C L++N +
Sbjct: 211 ECAGGCSGPQDTDCFA---CRHFNDSGACVPRCPQPLVYNKLTFQLE------------- 254
Query: 604 VRFSLKPKDESCQEGEFAAYPSDCNK---YQYCIWGSYQVASCSPGLYWNDKMKTCDWPY 660
P + + Y C + + + + V +C P DK
Sbjct: 255 ------PNPHTKYQ-----YGGVCVASCPHNFVVDQTSCVRACPPDKMEVDKNGLK--MC 301
Query: 661 RTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTP 720
T + + T + W
Sbjct: 302 EPCGGLCPKACEGTGSGS-----RFQTVDSSNIDGFVNCTKILGNLDFLITGLNGDPWH- 355
Query: 721 NPTEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYFTNWAWYRPGKGKYVPEDIRTDLCT 780
P +P ++ T + + Y I + + I
Sbjct: 356 ------KIPALDPEKLNVFRTVRE-ITGYLNIQSWPPHM---HNFSVFSNLTTIGGRSLY 405
Query: 781 HIVYGFAVLDSENL 794
+ + ++ + N+
Sbjct: 406 NRGFSLLIMKNLNV 419
Score = 34.3 bits (77), Expect = 0.34
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 14/161 (8%)
Query: 516 IRTQRPTRPATSSWWTPITTTESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQS 575
I R S WT + + + I D + + C +CS G
Sbjct: 437 ISANRQLCYHHSLNWTKVLRGPTEERLDIKHNRPRRDCVAEGKVCDP--LCSSGGC--WG 492
Query: 576 CGPSLLWNAKKKLCDWSYNVQCSFQSNIVRFSLKPK-----DESCQEGEFAA-----YPS 625
GP + + C+F + R CQ E A
Sbjct: 493 PGPGQCLSCRNYSRGGVCVTHCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSD 552
Query: 626 DCNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCKQ 666
C + + G + V+SC G+ + +C+
Sbjct: 553 TCAQCAHFRDGPHCVSSCPHGVLGAKGPIYKYPDVQNECRP 593
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl,
rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP
signaling protein; 2.01A {Mus musculus} PDB: 3me2_R
3qbq_B 3nzy_B
Length = 216
Score = 33.3 bits (75), Expect = 0.39
Identities = 20/128 (15%), Positives = 32/128 (25%), Gaps = 45/128 (35%)
Query: 544 IPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSNI 603
+ C + R C G L C P+ + C
Sbjct: 29 VTPPCTQERH--YEHLGRCCSRCEPGKYLSSKCTPTS-------------DSVC------ 67
Query: 604 VRFSLKPKDESCQEGEFAAYPSD---CNKYQYCIWGSYQVAS------------CSPGLY 648
C E+ ++ C ++ C G VA C+ G +
Sbjct: 68 ---------LPCGPDEYLDTWNEEDKCLLHKVCDAGKALVAVDPGNHTAPRRCACTAGYH 118
Query: 649 WNDKMKTC 656
WN + C
Sbjct: 119 WNSDCECC 126
>2w91_A Endo-beta-N-acetylglucosaminidase D; hydrolase, N-glycan, secreted,
oxazoline, NAG-thiazoline, substrate-participation;
1.40A {Streptococcus pneumoniae} PDB: 2w92_A*
Length = 653
Score = 34.0 bits (77), Expect = 0.41
Identities = 12/88 (13%), Positives = 21/88 (23%), Gaps = 11/88 (12%)
Query: 818 KKGVKVSLAIGGWNDSLGGKYSRLVN----SATARQRFIEHVVKFLLKYQFDGLDLDWEY 873
+ GV V + + R A +V Y +DG ++ E
Sbjct: 112 RNGVPVYGTLFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGYDGYFINQET 171
Query: 874 PTCWQVNCDAGPDSDKESFGLFVRELHQ 901
E F+ +
Sbjct: 172 TG-------DLVKPLGEKMRQFMLYSKE 192
Score = 32.9 bits (74), Expect = 0.93
Identities = 25/198 (12%), Positives = 48/198 (24%), Gaps = 26/198 (13%)
Query: 1206 VTALKKKGVKVT-LAIGGWNDSAGNKY---SRLVNSQQARSKFIAHVVNFILEHNFDGLD 1261
+ A + GV V W++S ++ L +V+ + +DG
Sbjct: 107 IDAGHRNGVPVYGTLFFNWSNSIADQERFAEALKQDADGSFPIARKLVDMAKYYGYDGYF 166
Query: 1262 LDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIP 1321
++ E D + + F KE A N YD
Sbjct: 167 INQETT----GDLVKPLGEKMRQFMLYSKEYAAKVNHPIKYSW-------------YDAM 209
Query: 1322 VMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTPTFNANYSLHYWVSHGADRKKV 1381
+ + + + V N +Y++ G + V
Sbjct: 210 TYNYGRYHQDGLGEYNYQFMQPEGDKVPADNFFANFNWDKAKNDYTIATANWIGRNPYDV 269
Query: 1382 -----IFGMPMYGQSFTL 1394
+ Y
Sbjct: 270 FAGLELQQGGSYKTKVKW 287
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for
structural genomics, JCSG, prote structure initiative,
PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP:
b.30.5.11 c.1.8.13
Length = 564
Score = 33.9 bits (77), Expect = 0.44
Identities = 13/135 (9%), Positives = 39/135 (28%), Gaps = 24/135 (17%)
Query: 1243 KFIAHVVNFILEHNFDGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRAAFNPHDLL 1302
++ + + + + + +D+ + + ++ + Q F I+ +R A +
Sbjct: 319 NWLFDLFSSLRKMGYRYFKIDFLFAGAVPGE-RKKNITPIQAFRKGIETIRKAVGEDSFI 377
Query: 1303 LS--AAVSPSKAVIDNAYDIPVMSENLDWISVMTYDYHGQWDKKTGHVAPMYALPNDTTP 1360
L + + P+ +D I D W +
Sbjct: 378 LGCGSPLLPAVGCVD-----------GMRIG---PDTAPFWGEHIED-------NGAPAA 416
Query: 1361 TFNANYSLHYWVSHG 1375
+ ++ + H
Sbjct: 417 RWALRNAITRYFMHD 431
>3tiq_A Surface protein G; single-layer beta sheet, biofilm formation,
structu protein; 1.87A {Staphylococcus aureus subsp}
Length = 214
Score = 33.0 bits (74), Expect = 0.50
Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 2/123 (1%)
Query: 981 KGAPSRKLVMGMPMYGQAFSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYEST 1040
+ P G+ G V P + ++T+ G G +
Sbjct: 85 ETIAPGHRDEFDPKLPTGEKEEVPGKPGIKNPETGDVVRPPVDSVTKY-GPVKGDSIVEK 143
Query: 1041 TEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTR 1100
E + P + VT E ++ E+ ITT T T + + T
Sbjct: 144 EEIPFEKERKFNPDLAPGTEKVT-REGQKGEKTITTPTLKNPLTGEIISKGESKEEITKD 202
Query: 1101 PKP 1103
P
Sbjct: 203 PIN 205
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.74
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 14/39 (35%)
Query: 1281 DKQGFADLIKELRAAFNPH--DLLLSAAVSPSKAVIDNA 1317
+KQ +K+L+A+ + D SA P+ A+ A
Sbjct: 18 EKQA----LKKLQASLKLYADD---SA---PALAI--KA 44
Score = 28.8 bits (63), Expect = 8.0
Identities = 4/24 (16%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTV 1061
+++ + Y +S P +T+
Sbjct: 26 QASLKLYAD---DSAPALAIKATM 46
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
b.42.2.1 PDB: 2f2f_A
Length = 206
Score = 32.6 bits (73), Expect = 0.76
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 650 NDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTT 709
N +M P ++T Q K + +++ N ++PS
Sbjct: 2 NQRMNDYSQPESQSDLAPKSSTIQPQPQPLLSKTPSMSLNLLSSSGPNRQVLPSEPSNFM 61
Query: 710 STTTDSGA----WTPNPTEWVW 727
+ +GA W W+W
Sbjct: 62 TLMGQNGALLTVWALAKRNWLW 83
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 32.2 bits (72), Expect = 1.0
Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 7/89 (7%)
Query: 1057 STSTVVTTEEPEQTEEPITTTT------TSTTTTTKRPKPPTTTSTTTTRPKPITTIKPK 1110
+T V E+ E IT TT + +P S P T
Sbjct: 130 KKATTVVFEDSETMPNGITGTTLFNWYGNRIQSGYFVIQPGEINSAPIATATPTTKPTAF 189
Query: 1111 PTTVKPKPTTTVKPKPTTVKPKPVIPPST 1139
+T+ P T T P TT P P+T
Sbjct: 190 ASTM-PTVTLTPTPTATTTTTIPTAVPTT 217
Score = 29.8 bits (66), Expect = 5.1
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 1075 TTTTTSTTTTTKRPKP-PTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVK 1130
+ PTT T P T+ P PT T P +++
Sbjct: 165 FVIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTTTIPTAVPTTESLE 221
Score = 29.1 bits (64), Expect = 9.7
Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 5/103 (4%)
Query: 1042 EEYKPT--SEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTT--KRPKPPTTTSTT 1097
E Y+ + EE+ V V+ + E T T TT +
Sbjct: 106 EVYRASESPEETGTLAVVGFKVLQKKATTVVFEDSETMPNGITGTTLFNWYGNRIQSGYF 165
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPT-TVKPKPVIPPST 1139
+P I + T KPT PT T+ P P +T
Sbjct: 166 VIQPGEINSAPIATATPTTKPTAFASTMPTVTLTPTPTATTTT 208
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 32.7 bits (73), Expect = 1.1
Identities = 18/119 (15%), Positives = 29/119 (24%), Gaps = 29/119 (24%)
Query: 546 ETCVNGDYLPDPDDCRSFLICSH---GNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSN 602
E C G P DC + C H + + C + +N +N + +
Sbjct: 217 EQCAAGCTGPKHSDCLA---CLHFNHSGICELHCPALVTYNTDTFESM--HNPEGRYTFG 271
Query: 603 IVRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLY---WNDKMKTCDW 658
SC + C C P D + C+
Sbjct: 272 ----------ASCV--------TTCPYNYLSTEVGSCTLVCPPNNQEVTAEDGTQRCEK 312
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL, AG
I/II protei surface adhesin, peptidoglycan-anchor; 2.30A
{Streptococcus gordonii}
Length = 349
Score = 32.1 bits (72), Expect = 1.4
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 1081 TTTTTKRPKPPTTTSTTTTRPKPIT--TIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPS 1138
++K ++ T PT + ++P P + P
Sbjct: 286 NMASSKSGNIWFAFNSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPP 345
Query: 1139 TK 1140
K
Sbjct: 346 VK 347
Score = 29.8 bits (66), Expect = 6.7
Identities = 9/52 (17%), Positives = 13/52 (25%)
Query: 669 ATTTSEQVPKPTKKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTP 720
A ++ KP PT E P + + TP
Sbjct: 298 AFNSNINAIGVPTKPVAPTAPTQPMYETEKPLEPAPVAPSYENEPTPPVKTP 349
>2q7z_A Complement receptor type 1; SCR domain, blood group antigen,
complement pathway, glycoprotein, immune response, innate
immunity, membrane; NMR {Homo sapiens}
Length = 1931
Score = 32.5 bits (73), Expect = 1.5
Identities = 33/253 (13%), Positives = 67/253 (26%), Gaps = 35/253 (13%)
Query: 530 WTPITTTESTQEEYIPETCVNGDYLPDPDDCRS----FLICSHGNLLK-------QSCGP 578
W+P + + + + P + + +C G LK G
Sbjct: 1205 WSPEAPRCAVKSCDDFLGQLPHGRVLFPLNLQLGAKVSFVCDEGFRLKGSSVSHCVLVGM 1264
Query: 579 SLLWNAKKKLCDWSYNVQCSFQSNIV--RFSLKPKDESCQEGEFAAY---PSDCNKYQYC 633
LWN +C ++ C I+ R + P + G+ +Y P +
Sbjct: 1265 RSLWNNSVPVC---EHIFCPNPPAILNGRHTGTPSGD-IPYGKEISYTCDPHPDRGMTFN 1320
Query: 634 IWGSYQVASCSPGLYWNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTT 693
+ G + C+ + N P + + P + P P
Sbjct: 1321 LIGESTI-RCTSDPHGN---GVWSSPAPRCE----LSVRAGHCKTPEQFPFASPTIPIND 1372
Query: 694 TEYNPPEATT-------KPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTEKSPL 746
E+ + + + ++ W+ P + +
Sbjct: 1373 FEFPVGTSLNYECRPGYFGKMFSISCLENLVWSSVEDNCRRKSCGPPPEPFNGMVHINTD 1432
Query: 747 DQYFKIVCYFTNW 759
Q+ V Y N
Sbjct: 1433 TQFGSTVNYSCNE 1445
Score = 30.9 bits (69), Expect = 3.9
Identities = 29/252 (11%), Positives = 63/252 (25%), Gaps = 36/252 (14%)
Query: 526 TSSWWTPITTTESTQEEYIPETCVNGDYLPDPDDCRSF-----LICSHGNLLKQ------ 574
++ W+ +P T NGD++ + + C+ G+ ++
Sbjct: 1009 NTAHWSTKPPICQRIPCGLPPTIANGDFISTNRENFHYGSVVTYRCNLGSRGRKVFELVG 1068
Query: 575 --------SCGPSLLWNAKKKLCDWSYNVQCSFQSNIVRFSLKPKDESCQEGEFAAYPSD 626
+ +W+ C +C+ + + E +
Sbjct: 1069 EPSIYCTSNDDQVGIWSGPAPQC--IIPNKCTPPNVENGILVSDNRSLFSLNEVVEF--R 1124
Query: 627 CNKYQYCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKP 686
C + + G +V C W ++ +C R ++ P+
Sbjct: 1125 CQPG-FVMKGPRRV-KCQALNKWEPELPSCS---RVCQ-------PPPEILHGEHTPSHQ 1172
Query: 687 TK-KPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTEKSP 745
P Y+ + T G W+P + P
Sbjct: 1173 DNFSPGQEVFYSCEPGYDLRGAASLHCTPQGDWSPEAPRCAVKSCDDFLGQLPHGRVLFP 1232
Query: 746 LDQYFKIVCYFT 757
L+ F
Sbjct: 1233 LNLQLGAKVSFV 1244
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 32.0 bits (73), Expect = 1.6
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 3/103 (2%)
Query: 1036 NYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTK---RPKPPT 1092
+ EST E K T ++ K + + Q I+ + +
Sbjct: 66 DLESTLAELKKTLKKKKTPKKPIAAANGSANVTQKLANISISQQRPNDRLPDWLDEEESE 125
Query: 1093 TTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVI 1135
T + TTV KP P +
Sbjct: 126 GERNGEEANDEKTVQRYYKTTVPTKPKKPHDISAFVKSALPHL 168
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A
{Rattus norvegicus} PDB: 3uel_A*
Length = 588
Score = 32.1 bits (72), Expect = 1.6
Identities = 17/131 (12%), Positives = 36/131 (27%), Gaps = 15/131 (11%)
Query: 1036 NYESTTEEYKPTSEESKP-TTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT 1094
N S + + + + K + ++ V + ++ +E + PP
Sbjct: 1 NSSSLNVDGRSSKQHGKRDSKITDHFVRIPKSEDKRKEQCEVRHQRAERKIPKYVPPNLP 60
Query: 1095 STTTTRPKPITTIKPKPT------TVKPKPTTTV--------KPKPTTVKPKPVIPPSTK 1140
PI ++ P ++P + TV + P
Sbjct: 61 PDKKWLGTPIEEMRKMPRCGVRLPLLRPSASHTVTVRVDLLRAGEVPKPFPTHYKDLWDN 120
Query: 1141 DEFKIVCYFTN 1151
K+ C N
Sbjct: 121 KHVKMPCSEQN 131
>3t3w_A Probable enoyl-COA hydratase; ssgcid, structural genomics, seattle
ST genomics center for infectious disease, lyase; 1.80A
{Mycobacterium thermoresistibile} PDB: 3ome_A
Length = 279
Score = 31.5 bits (72), Expect = 1.8
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 912 AAVSP-----SKQVINAAYDVKALSESLDWISVMTYDYHGQWDKKTG 953
A + P +K+ +N DV+ ++ + + HG +G
Sbjct: 218 AKMPPFALRQAKRAVNQTLDVQGFYAAIQSVFDIHQTGHGNAMSVSG 264
>1t1j_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, MIDW center for structural genomics, MCSG;
1.70A {Pseudomonas aeruginosa} SCOP: c.23.14.2
Length = 125
Score = 30.2 bits (67), Expect = 2.2
Identities = 11/37 (29%), Positives = 17/37 (45%), Gaps = 6/37 (16%)
Query: 1192 HDTWADLDNKFYEKVTALKKKGVKVTLAIGGWNDSAG 1228
WA +D + + + L + L + GW DSAG
Sbjct: 69 GRLWAPVDAFYMDHLEEL------IVLDLPGWRDSAG 99
>3vbh_B EV71, genome polyprotein, capsid protein VP2; hand-foot-and-mouth
disease, enterovirus uncoating, P factor,
adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71}
PDB: 3vbf_B* 3vbs_B* 4aed_B* 3vbo_B 3vbr_B 3vbu_B 4agy_B
4agx_B
Length = 245
Score = 31.0 bits (70), Expect = 2.3
Identities = 14/66 (21%), Positives = 17/66 (25%), Gaps = 4/66 (6%)
Query: 667 TSATTTSEQVPKPTKKPTKPT--KKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTE 724
S TT E P+ T P S T D+ W +
Sbjct: 11 NSTITTQEAANIIVGYGEWPSYCSDSDATAVDKPTRPD--VSVNRFYTLDTKLWEKSSKG 68
Query: 725 WVWHPP 730
W W P
Sbjct: 69 WYWKFP 74
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 31.4 bits (70), Expect = 2.6
Identities = 18/113 (15%), Positives = 30/113 (26%), Gaps = 29/113 (25%)
Query: 547 TCVNGDYLPDPDDCRSFLICSHGNLLKQ---SCGPSLLWNAKKKLCDWSYNVQCSFQSNI 603
C D DP C + C + L + +C P + ++S+
Sbjct: 215 NCSQPD---DPTKCVA---CRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLH----- 263
Query: 604 VRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQVASCSPGLYWNDKMKTC 656
C+ +QY I + + C G N C
Sbjct: 264 ---------HKCK------NSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLC 301
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen,
blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP:
h.1.8.1 PDB: 1ei3_A
Length = 491
Score = 31.5 bits (70), Expect = 2.6
Identities = 16/152 (10%), Positives = 39/152 (25%), Gaps = 7/152 (4%)
Query: 1003 NSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVSTSTVV 1062
+ ++ + + VH T+T+ + GP G E E+ +
Sbjct: 274 RESPSLVDKTSSASSVHRCTRTVTKKVISGPDGPREEIVEKMVSSDGSDCSHLQGGREGS 333
Query: 1063 TTEEPEQTE-------EPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVK 1115
T + P + + + + + +ST++ ++ K
Sbjct: 334 TYHFSGTGDFHKLDRLLPDLESFFTHDSVSTSSRHSIGSSTSSHVTGAGSSHLGTGGKDK 393
Query: 1116 PKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVC 1147
+ + K V
Sbjct: 394 FTDLGEEEEDDFGGLQPSGFAAGSASHSKTVL 425
>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
b.1.1.2
Length = 444
Score = 31.4 bits (71), Expect = 2.8
Identities = 23/131 (17%), Positives = 35/131 (26%), Gaps = 21/131 (16%)
Query: 1035 GNYESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTT 1094
G+ S + + T S+ TV ++ P Q+ T P ++T
Sbjct: 162 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI------------TCNVAHPASST 209
Query: 1095 STTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFT---- 1150
TIKP P P P P PK + C
Sbjct: 210 KVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSE 269
Query: 1151 -----NWAWYR 1156
+W+
Sbjct: 270 DDPDVQISWFV 280
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 30.9 bits (69), Expect = 3.2
Identities = 5/76 (6%), Positives = 10/76 (13%), Gaps = 2/76 (2%)
Query: 1067 PEQTEEPITTTTTSTTTTTKRPKPPTTTST--TTTRPKPITTIKPKPTTVKPKPTTTVKP 1124
+ + S P P P
Sbjct: 5 HHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDT 64
Query: 1125 KPTTVKPKPVIPPSTK 1140
+ ++ T
Sbjct: 65 VTGDSVLQRILRGPTG 80
Score = 29.7 bits (66), Expect = 9.1
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 4/62 (6%)
Query: 1082 TTTTKRPKPPTTTSTTTTRPKPITTIKPKPTT----VKPKPTTTVKPKPTTVKPKPVIPP 1137
++ + P ++ + + P T P P PP
Sbjct: 3 SSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPP 62
Query: 1138 ST 1139
T
Sbjct: 63 DT 64
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP:
g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R
1d4v_A
Length = 130
Score = 29.7 bits (66), Expect = 3.3
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 14/67 (20%)
Query: 613 ESCQEG-EFAAYPSD---CNKYQYCIWGSYQVASCS----------PGLYWNDKMKTCDW 658
SC+ G +++ + +D C + C G +++ C+ G + +
Sbjct: 42 ISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCR 101
Query: 659 PYRTKCK 665
RT C
Sbjct: 102 KCRTGCP 108
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted
(beta/alpha)8 (TIM) barrel glycoside hydrolase DOM WALL;
2.90A {Streptococcus pneumoniae}
Length = 1531
Score = 31.1 bits (69), Expect = 3.6
Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Query: 1055 TVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKP------PTTTSTTTTRPKPITTIK 1108
++S + T P + T + + PK P T T + + K
Sbjct: 2 SMSVQSGSTANLPADLATALATAKENDGHDFEAPKVGEDQGSPEVTDGPKTEEELLALEK 61
Query: 1109 PKPTTVKPKPTTTVKPKPTTVK 1130
KP KPK KP T K
Sbjct: 62 EKPAEEKPKEDKPAAAKPETPK 83
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for structural
GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP:
c.108.1.20
Length = 236
Score = 30.5 bits (69), Expect = 3.6
Identities = 14/97 (14%), Positives = 26/97 (26%), Gaps = 13/97 (13%)
Query: 1198 LDNKFYEKVTALKKKGVKVTLAIGGWNDSAGNKYSRLVNSQQARSKFIAHVVNFILEHNF 1257
+ F E V + + + + GG V + +
Sbjct: 78 IREGFREFVAFINEHEIPFYVISGGM--------DFFVYPLLEGIVEKDRIYCNHASFDN 129
Query: 1258 DGLDLDWEYPKCWQVDCKQGPASDKQGFADLIKELRA 1294
D + +DW + + C K +I EL
Sbjct: 130 DYIHIDWPHS--CKGTCSNQCGCCK---PSVIHELSE 161
>1haq_A Complement factor H; immunology, glycoprotein, complement alternate
pathway, SCR, CCP; NMR {Homo sapiens} PDB: 3gau_A 3gav_A
3gaw_A 2qfh_A 2qfg_A 1hfh_A 2kms_A 1hfi_A 1hcc_A
Length = 1213
Score = 30.9 bits (69), Expect = 4.6
Identities = 33/247 (13%), Positives = 64/247 (25%), Gaps = 37/247 (14%)
Query: 526 TSSWWTPITTTESTQEEYIPETCVNGDYLPDPDDCRSFLICSHGNLLKQSC--GPSLLWN 583
T S W P+ + E E + Y+P+ D + G+ + C G
Sbjct: 234 TESGWRPLPSCE--------EKSCDNPYIPNGDYSPLRIKHRTGDEITYQCRNGFYPATR 285
Query: 584 AKKKLCD---WSYNVQCSFQS---------NIVRFSLKPKDESCQEGEFAAYPSDCNKYQ 631
C W +C+ + + +++ G++ +Y C+++
Sbjct: 286 GNTAKCTSTGWIPAPRCTLKPCDYPDIKHGGLYHENMRRPYFPVAVGKYYSYY--CDEHF 343
Query: 632 YCIWGSYQVASCSPGLYWNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPT 691
GSY W+ + KC + +
Sbjct: 344 ETPSGSYWDHIHCTQDGWSPAVPCLR-----KCYFPY-------LENGYNQNHGRKFVQG 391
Query: 692 TTTEYNPPEATTKPSTTTSTTTDSGAWTPNPT-EWVWHPPTEPTTTHISVTEKSPLDQYF 750
+ + P T+ T W+P P V +S
Sbjct: 392 KSIDVACHPGYALPKAQTTVTCMENGWSPTPRCIRVKTCSKSSIDIENGFISESQYTYAL 451
Query: 751 KIVCYFT 757
K +
Sbjct: 452 KEKAKYQ 458
>1uyj_A Epsilon-toxin; beta pore forming toxin; 2.6A {Clostridium
perfringens} SCOP: f.8.1.2
Length = 296
Score = 30.4 bits (67), Expect = 5.0
Identities = 29/202 (14%), Positives = 57/202 (28%), Gaps = 17/202 (8%)
Query: 1038 ESTTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTT 1097
+ ++ + + ++ T + + + + + P T S TT+ T T++
Sbjct: 99 KLKSQSFTCKNTDTVTATTTHTVGTSIQATAKFTVPFNETGVSLTTSYSFANTNTNTNSK 158
Query: 1098 TTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPKPVIPPSTKDEFKIVCYFTNWAWYRQ 1157
+ + V T V V K K+V + W
Sbjct: 159 EIT----HNVPSQDILVPANTTVEVIAYLKKVN--------VKGNVKLVGQVSGSEWGEI 206
Query: 1158 SGGKYLPSDIDSDLCTHVIYGFAVLDTDQLVIKPHDTW-----ADLDNKFYEKVTALKKK 1212
P D + + + + + I + +L K T ++
Sbjct: 207 PSYLAFPRDGYKFSLSDTVNKSDLNEDGTININGKGNYSAVMGDELIVKVRNLNTNNVQE 266
Query: 1213 GVKVTLAIGGWNDSAGNKYSRL 1234
V NDS KY L
Sbjct: 267 YVIPVDKKEKSNDSNIVKYRSL 288
>2b6b_D CD209 antigen; cryo EM dengue CRD DC-SIGN, icosahedral virus,
virus-recepto; 25.00A {Homo sapiens} SCOP: d.169.1.1
Length = 175
Score = 29.4 bits (66), Expect = 5.3
Identities = 10/42 (23%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 649 WNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKP 690
WND C+ CK+++A+ + ++ + P P P
Sbjct: 135 WNDD--KCNLAKFWICKKSAASCSRDEEQFLSPAPATPNPPP 174
>1eys_C Photosynthetic reaction center; membrane protein complex, electron
transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A
{Thermochromatium tepidum} SCOP: a.138.1.2
Length = 382
Score = 30.2 bits (67), Expect = 6.0
Identities = 10/71 (14%), Positives = 21/71 (29%)
Query: 1045 KPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTTRPKPI 1104
++E+ P + S E E + +P + + P P+
Sbjct: 311 TAVTQEALPGSAPASEAAPAAATEAAPEAPAQEVPAAEAVPAAAEPGAAEAAGSVEPAPV 370
Query: 1105 TTIKPKPTTVK 1115
+ P P +
Sbjct: 371 EEVAPAPAAQR 381
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 30.4 bits (66), Expect = 6.1
Identities = 11/101 (10%), Positives = 27/101 (26%)
Query: 999 FSLANSNDHGLNAAAPGAGVHPLLSTITEVLGHGPGGNYESTTEEYKPTSEESKPTTVST 1058
L N+N + A ++ + I ++ G Y + + + P
Sbjct: 72 IVLTNANGVPVTGLEQYAQINAIGLGIAKLTPESGKGYKTPQWVSYINSVKAADPARSLA 131
Query: 1059 STVVTTEEPEQTEEPITTTTTSTTTTTKRPKPPTTTSTTTT 1099
+ T + + + + +T T
Sbjct: 132 NYSYTDGKDSAGNPITKEVKFTPGDAIQANIESSCKTTCLT 172
>2aam_A Hypothetical protein TM1410; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; HET: MSE UNL; 2.20A {Thermotoga
maritima} SCOP: c.1.8.15
Length = 309
Score = 29.8 bits (66), Expect = 6.2
Identities = 20/172 (11%), Positives = 52/172 (30%), Gaps = 26/172 (15%)
Query: 1185 DQLVIKPHDTWADLDNKFYEKVTALKKKGVKVT--LAIG-------GWNDSAGNKY---- 1231
+ VI ++ E++ + GV + IG W +S
Sbjct: 41 EIAVIDYSKDGSESGEYSPEEIKIMVDAGVVPVAYVNIGQAEDYRFYWKESWYTNTPEWL 100
Query: 1232 ---------SRLVN-SQQARSKFIAHVVNFILEHNFDGLDLDW-EYPKCWQVDCKQGPAS 1280
+ V + + ++ +++ F G+ LD + + W + S
Sbjct: 101 GEEDPAWPGNYFVKYWYNEWKEIVFSYLDRVIDQGFKGIYLDRIDSFEYWAQEGVISRRS 160
Query: 1281 DKQGFADLIKELRAAFNPHDLLLSAAVSPSKAVIDNAYDIPVMSENLDWISV 1332
+ + + E+ + + ++D D ++ + +V
Sbjct: 161 AARKMINFVLEIAEYVRERKPDMLIIPQNGENILDF--DDGQLASTVSGWAV 210
>2h6o_A Major outer envelope glycoprotein GP350; viral protein; HET: NAG MAN
BMA NDG GAL FUC; 3.50A {Human herpesvirus 4}
Length = 470
Score = 29.9 bits (66), Expect = 6.7
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 1074 ITTTTTSTTTTTKRPKPPTTTSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTT 1128
IT T T+ TTTT + +TTT P TT P T P++T P T
Sbjct: 405 ITRTATNATTTTHKVIFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLT 459
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 28.9 bits (64), Expect = 7.5
Identities = 17/99 (17%), Positives = 23/99 (23%), Gaps = 19/99 (19%)
Query: 613 ESCQEGEFAAYPSD--CNKYQYCIWGSYQV------------ASCSPGLYWNDKMKTCDW 658
C G + S C +C S C G D K
Sbjct: 41 RPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDSYKPGVD 100
Query: 659 PYRTKCKQTSATTTSEQVPKP---TKKPTKPTKKPTTTT 694
C + Q KP K T +P + +
Sbjct: 101 --CAPCPPGHFSPGDNQACKPWTNCTLAGKHTLQPASNS 137
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 29.0 bits (64), Expect = 7.5
Identities = 26/193 (13%), Positives = 44/193 (22%), Gaps = 61/193 (31%)
Query: 546 ETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLCDWSYNVQCSFQSNIVR 605
ET YL ++ L+C C P K+ C + C
Sbjct: 1 ETF-PPKYLHYDEETSHQLLCD-------KCPPG---TYLKQHCTAKWKTVC-------- 41
Query: 606 FSLKPKDESCQEGEFAAYPSDCNK----YQYCIWGSYQVASCS----------PGLYWND 651
C + + ++ C Y C+ G Y
Sbjct: 42 -------APCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEI 94
Query: 652 K--------------MKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKPTTTTEYN 697
+ ++ T CK+ S P +K T + +
Sbjct: 95 EFCLKHRSCPPGFGVVQAGTPERNTVCKRCPDGFFS-----NETSSKAPCRKHTNCSVFG 149
Query: 698 PPEATTKPSTTTS 710
T+ T
Sbjct: 150 LLL--TQKGNATH 160
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine,
signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1
g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Length = 162
Score = 28.9 bits (64), Expect = 7.8
Identities = 21/158 (13%), Positives = 44/158 (27%), Gaps = 33/158 (20%)
Query: 547 TCVNGDYLPDPDDCRSFLICSHGNLLKQSCGPSLLWNAKKKLC-------DWSYNVQC-S 598
C G Y+ ++ C G L C P + + C ++ C S
Sbjct: 4 VCPQGKYIHPQNNSICCTKCHKGTYLYNDC-PGPGQDTDCRECESGSFTASENHLRHCLS 62
Query: 599 FQSNIVRFSLKPKDE---------SCQEGEFAAYPSD----CNKYQYCIWGSYQVA---- 641
C++ ++ Y S+ C C+ G+ ++
Sbjct: 63 CSKCRKEMGQVEISSCTVDRDTVCGCRKNQYRHYWSENLFQCFNCSLCLNGTVHLSCQEK 122
Query: 642 -----SCSPGLYWN-DKMKTCDW-PYRTKCKQTSATTT 672
+C G + ++ +C +C +
Sbjct: 123 QNTVCTCHAGFFLRENECVSCSNCKKSLECTKLCLPQI 160
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 29.5 bits (66), Expect = 8.4
Identities = 18/111 (16%), Positives = 28/111 (25%), Gaps = 16/111 (14%)
Query: 1039 STTEEYKPTSEESKPTTVSTSTVVTTEEPEQTEEPITTTTTSTTTTTKRP-----KPPTT 1093
E E++ +S + + Q +E + P PP
Sbjct: 340 DDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAYPPQGYAPPPQG 399
Query: 1094 TSTTTTRPKPITTIKPKPTTVKPKPTTTVKPKPTTVKPK---PVIPPSTKD 1141
P P+ + P P P P+ P PP D
Sbjct: 400 Y--------PPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGVD 442
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 29.8 bits (67), Expect = 9.0
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 6/66 (9%)
Query: 681 KKPTKPTKKPTTTTEYNPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISV 740
K + T TT+T T PS ++TT + T PT PT+ + +
Sbjct: 361 KDSSSHTSYTTTST------VTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGL 414
Query: 741 TEKSPL 746
T S L
Sbjct: 415 TPYSAL 420
>2xr6_A CD209 antigen; sugar binding protein, carbohydrate binding,
mannose; HET: MAN 07B; 1.35A {Homo sapiens} PDB: 1sl4_A*
2it6_A* 1k9i_A* 2xr5_A* 1sl5_A* 2it5_A* 1xph_A 1k9j_A*
Length = 170
Score = 28.6 bits (64), Expect = 9.3
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 649 WNDKMKTCDWPYRTKCKQTSATTTSEQVPKPTKKPTKPTKKP 690
WND C+ CK+++A+++ ++ + P P P
Sbjct: 130 WNDD--KCNLAKFWICKKSAASSSRDEEQFLSPAPATPNPPP 169
>1itk_A Catalase-peroxidase; heme protein, oxidoreductase; HET: HEM; 2.00A
{Haloarcula marismortui} SCOP: a.93.1.3 a.93.1.3
Length = 731
Score = 29.6 bits (67), Expect = 9.7
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 716 GAWTPNPTEW 725
G WT +PTEW
Sbjct: 309 GPWTQSPTEW 318
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 29.6 bits (65), Expect = 9.9
Identities = 27/281 (9%), Positives = 50/281 (17%), Gaps = 36/281 (12%)
Query: 544 IPETCVNGDYLPDPDDCRSFLICSHGNLLKQSCGP-SLLWNAKKKLCDWSYNVQCSFQSN 602
I + Y D H + G KL QC+
Sbjct: 145 IVSNGTDAYYNYDFTAPERECPKCHESCTHGCWGEGPKNCQKFSKLTCSP---QCAGGRC 201
Query: 603 IVRFSLKPKDESCQEGEFAAYPSDCNKYQYCIWGSYQ---VASCSPGLYWNDKMKTCD-- 657
+ C G DC C + C P +N +
Sbjct: 202 YGPKPRECCHLFCAGGCTGPTQKDCIA---CKNFFDEGVCKEECPPMRKYNPTTYVLETN 258
Query: 658 -------------------WPYRTKCKQT--SATTTSEQVPKPTKKPTKPTKKPTTTTEY 696
C ++ P P T T
Sbjct: 259 PEGKYAYGATCVKECPGHLLRDNGACVRSCPQDKMDKGGECVPCNGPCPKTCPGVTVLHA 318
Query: 697 NPPEATTKPSTTTSTTTDSGAWTPNPTEWVWHPPTEPTTTHISVTEKSPLDQYFKIVCYF 756
++ + + + P + +I Y
Sbjct: 319 GNIDSFRNCTVIDGNIRILDQTFSGFQDVYANYTMGPRYIPLDPERLEVFSTVKEITGYL 378
Query: 757 TNWAWYRPGKGKYVPED---IRTDLCTHIVYGFAVLDSENL 794
+ + + I ++ + +L
Sbjct: 379 NIEGTHPQFRNLSYFRNLETIHGRQLMESMFAALAIVKSSL 419
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.413
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 23,154,627
Number of extensions: 1426330
Number of successful extensions: 4374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3696
Number of HSP's successfully gapped: 262
Length of query: 1490
Length of database: 6,701,793
Length adjustment: 106
Effective length of query: 1384
Effective length of database: 3,742,167
Effective search space: 5179159128
Effective search space used: 5179159128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 64 (28.4 bits)