BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10301
(1119 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 282 bits (722), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 255/890 (28%), Positives = 413/890 (46%), Gaps = 131/890 (14%)
Query: 47 YTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLG 106
Y +E G + ++ E +G N +P + K+ +LV E +D+ + IL +AA +S
Sbjct: 16 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 75
Query: 107 LSFYHPGGESEHDNEETKYEWIEGAAXXXXXXXXXXXTAFNDYSKEKQFRGLQNQIEGEH 166
L+++ G EET ++E + + + E L+
Sbjct: 76 LAWFEEG-------EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 128
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPAD-GIL-IQSNDLKIDESSLTGESDHV 224
K + +++I DIV GDI ++ GD +PAD IL I+S L++D+S LTGES V
Sbjct: 129 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 188
Query: 225 KKG--ELFDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXX 273
K + DP M+ SGT++ G +V GV+++ G I + AT
Sbjct: 189 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAAT----- 243
Query: 274 XXXXXXXXXXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAIL 333
++ K+ LQ KL + Q+ S I +
Sbjct: 244 --------------------------------EQDKTPLQQKLDEFGEQLSKVISLICVA 271
Query: 334 TVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSV 393
+I I + D + R + +F + V + V A+PEGLP +T LA
Sbjct: 272 VWLINIGHF-------NDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGT 324
Query: 394 KKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYV--------CEVQYKN 445
++M K N +VR L + ET+G + ICSDKTGTLTTN+M+ + ++ C + +
Sbjct: 325 RRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFS 384
Query: 446 IPKYEDIPEDIASK------------IVEGISVNSGYTSKIMAPENANELPKQVGNKTEC 493
I PE K +VE ++ + + + ++VG TE
Sbjct: 385 ITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATET 444
Query: 494 ALLGFVVAIGKNYQTVRD-----------DLPEEVFTRVYT--FNSVRKSMSTVI-PKKN 539
AL V + VR+ + ++ + +T F+ RKSMS P K+
Sbjct: 445 ALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKS 504
Query: 540 -----GYRVYTKGASEIILKKCSYIYGRNGHLE-KFTKDMQGRLVRNVIE-PMACDGLRT 592
G +++ KGA E ++ +C+Y+ R G T ++ +++ + E D LR
Sbjct: 505 SRAAVGNKMFVKGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRC 562
Query: 593 ISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSH---LTCLCVIGIEDPVRPEVPEAIK 649
+++A +D + E+ DD S + + LT + V+G+ DP R EV +I+
Sbjct: 563 LALATRDTPPKREEMV---------LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQ 613
Query: 650 KCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLL 709
C+ AGI + M+TGDN TA +I + GI E+ + + + R D+ +Q
Sbjct: 614 LCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE---VADRAYTGREFDDLPLAEQR-- 668
Query: 710 DKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
+ R AR PS K +V+ + + E+ A+TGDG ND PALKKA++G AMG
Sbjct: 669 -EACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIGIAMG 722
Query: 770 ITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGAC 829
+GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F+ A
Sbjct: 723 -SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 781
Query: 830 AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALIS 879
L VQ+LWVNL+ D L + AL P D++ R P + LIS
Sbjct: 782 LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 831
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 282 bits (722), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 255/890 (28%), Positives = 413/890 (46%), Gaps = 131/890 (14%)
Query: 47 YTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLG 106
Y +E G + ++ E +G N +P + K+ +LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYHPGGESEHDNEETKYEWIEGAAXXXXXXXXXXXTAFNDYSKEKQFRGLQNQIEGEH 166
L+++ G EET ++E + + + E L+
Sbjct: 75 LAWFEEG-------EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPAD-GIL-IQSNDLKIDESSLTGESDHV 224
K + +++I DIV GDI ++ GD +PAD IL I+S L++D+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 225 KKG--ELFDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXX 273
K + DP M+ SGT++ G +V GV+++ G I + AT
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAAT----- 242
Query: 274 XXXXXXXXXXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAIL 333
++ K+ LQ KL + Q+ S I +
Sbjct: 243 --------------------------------EQDKTPLQQKLDEFGEQLSKVISLICVA 270
Query: 334 TVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSV 393
+I I + D + R + +F + V + V A+PEGLP +T LA
Sbjct: 271 VWLINIGHF-------NDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGT 323
Query: 394 KKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYV--------CEVQYKN 445
++M K N +VR L + ET+G + ICSDKTGTLTTN+M+ + ++ C + +
Sbjct: 324 RRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFS 383
Query: 446 IPKYEDIPEDIASK------------IVEGISVNSGYTSKIMAPENANELPKQVGNKTEC 493
I PE K +VE ++ + + + ++VG TE
Sbjct: 384 ITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATET 443
Query: 494 ALLGFVVAIGKNYQTVRD-----------DLPEEVFTRVYT--FNSVRKSMSTVI-PKKN 539
AL V + VR+ + ++ + +T F+ RKSMS P K+
Sbjct: 444 ALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKS 503
Query: 540 -----GYRVYTKGASEIILKKCSYIYGRNGHLE-KFTKDMQGRLVRNVIE-PMACDGLRT 592
G +++ KGA E ++ +C+Y+ R G T ++ +++ + E D LR
Sbjct: 504 SRAAVGNKMFVKGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRC 561
Query: 593 ISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSH---LTCLCVIGIEDPVRPEVPEAIK 649
+++A +D + E+ DD S + + LT + V+G+ DP R EV +I+
Sbjct: 562 LALATRDTPPKREEMV---------LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQ 612
Query: 650 KCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLL 709
C+ AGI + M+TGDN TA +I + GI E+ + + + R D+ +Q
Sbjct: 613 LCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE---VADRAYTGREFDDLPLAEQR-- 667
Query: 710 DKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
+ R AR PS K +V+ + + E+ A+TGDG ND PALKKA++G AMG
Sbjct: 668 -EACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIGIAMG 721
Query: 770 ITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGAC 829
+GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F+ A
Sbjct: 722 -SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 780
Query: 830 AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALIS 879
L VQ+LWVNL+ D L + AL P D++ R P + LIS
Sbjct: 781 LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 280 bits (717), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 251/889 (28%), Positives = 411/889 (46%), Gaps = 130/889 (14%)
Query: 47 YTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLG 106
Y +E G + ++ E +G N +P + K+ +LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVLEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYHPGGESEHDNEETKYEWIEGAAXXXXXXXXXXXTAFNDYSKEKQFRGLQNQIEGEH 166
L+++ G EET ++E + + + E L+
Sbjct: 75 LAWFEEG-------EETVTAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADG--ILIQSNDLKIDESSLTGESDHV 224
K + +++I DIV GDI ++ GD +PAD + I+S L++D+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSV 187
Query: 225 KKG--ELFDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXX 273
K + DP M+ SGT++ G +V GV ++ G I + AT
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKAIGIVATTGVGTEIGKIRDQMAAT----- 242
Query: 274 XXXXXXXXXXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAIL 333
++ K+ LQ KL + Q+ S I +
Sbjct: 243 --------------------------------EQDKTPLQQKLDEFGEQLSKVISLICVA 270
Query: 334 TVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSV 393
+I I + D + R + +F + V + V A+PEGLP +T LA
Sbjct: 271 VWLINIGHF-------NDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGT 323
Query: 394 KKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYV--------CEVQYKN 445
++M K N +VR L + ET+G + ICSDKTGTLTTN+M+ + ++ C + +
Sbjct: 324 RRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDRIDGDLCLLNEFS 383
Query: 446 IPKYEDIPEDIASK------------IVEGISVNSGYTSKIMAPENANELPKQVGNKTEC 493
+ PE K +VE ++ + + + ++VG TE
Sbjct: 384 VTGSTYAPEGEVLKNDKPVRSGQYDGLVELATICALCNDSSLDFNETKGIYEKVGEATET 443
Query: 494 ALLGFVVAIGKNYQTVRD-----------DLPEEVFTRVYT--FNSVRKSMSTVI-PKKN 539
AL V + VR+ + ++ + +T F+ RKSMS P K+
Sbjct: 444 ALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKS 503
Query: 540 ----GYRVYTKGASEIILKKCSYIYGRNGHLE-KFTKDMQGRLVRNVIE-PMACDGLRTI 593
G +++ KGA E ++ +C+Y+ R G T ++ +++ + E D LR +
Sbjct: 504 RAAVGNKMFVKGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCL 561
Query: 594 SIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSH---LTCLCVIGIEDPVRPEVPEAIKK 650
++A +D + E+ DD + + + LT + V+G+ DP R EV +I+
Sbjct: 562 ALATRDTPPKREEMV---------LDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQL 612
Query: 651 CQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLD 710
C+ AGI + M+TGDN TA +I + GI ED + + + R D+ +Q
Sbjct: 613 CRDAGIRVIMITGDNKGTAIAICRRIGIFGENED---VADRAYTGREFDDLPLAEQR--- 666
Query: 711 KVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGI 770
+ R AR P+ K +V+ + + E+ A+TGDG ND PALKKA++G AMG
Sbjct: 667 EACRRACCFARVEPTHKSKIVE-----YLQSFDEITAMTGDGVNDAPALKKAEIGIAMG- 720
Query: 771 TGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACA 830
+GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F+ A
Sbjct: 721 SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAAL 780
Query: 831 VQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALIS 879
L VQ+LWVNL+ D L + AL P D++ R P + LIS
Sbjct: 781 GLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRTPKEPLIS 829
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 280 bits (715), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 254/890 (28%), Positives = 412/890 (46%), Gaps = 131/890 (14%)
Query: 47 YTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLG 106
Y +E G + ++ E +G N +P + K+ +LV E +D+ + IL +AA +S
Sbjct: 15 YFGVSETTGLTPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFV 74
Query: 107 LSFYHPGGESEHDNEETKYEWIEGAAXXXXXXXXXXXTAFNDYSKEKQFRGLQNQIEGEH 166
L+++ G EET ++E + + + E L+
Sbjct: 75 LAWFEEG-------EETITAFVEPFVILLILIANAIVGVWQERNAENAIEALKEYEPEMG 127
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPAD-GIL-IQSNDLKIDESSLTGESDHV 224
K + +++I DIV GDI ++ GD +PAD IL I+S L++D+S LTGES V
Sbjct: 128 KVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSV 187
Query: 225 KKG--ELFDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXX 273
K + DP M+ SGT++ G +V GV+++ G I + AT
Sbjct: 188 IKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRDQMAAT----- 242
Query: 274 XXXXXXXXXXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAIL 333
++ K+ LQ KL + Q+ S I +
Sbjct: 243 --------------------------------EQDKTPLQQKLDEFGEQLSKVISLICVA 270
Query: 334 TVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSV 393
+I I + D + R + +F + V + V A+PEGLP +T LA
Sbjct: 271 VWLINIGHF-------NDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGT 323
Query: 394 KKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYV--------CEVQYKN 445
++M K N +VR L + ET+G + ICS KTGTLTTN+M+ + ++ C + +
Sbjct: 324 RRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMFIIDKVDGDFCSLNEFS 383
Query: 446 IPKYEDIPEDIASK------------IVEGISVNSGYTSKIMAPENANELPKQVGNKTEC 493
I PE K +VE ++ + + + ++VG TE
Sbjct: 384 ITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGVYEKVGEATET 443
Query: 494 ALLGFVVAIGKNYQTVRD-----------DLPEEVFTRVYT--FNSVRKSMSTVI-PKKN 539
AL V + VR+ + ++ + +T F+ RKSMS P K+
Sbjct: 444 ALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKSMSVYCSPAKS 503
Query: 540 -----GYRVYTKGASEIILKKCSYIYGRNGHLE-KFTKDMQGRLVRNVIE-PMACDGLRT 592
G +++ KGA E ++ +C+Y+ R G T ++ +++ + E D LR
Sbjct: 504 SRAAVGNKMFVKGAPEGVIDRCNYV--RVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRC 561
Query: 593 ISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSH---LTCLCVIGIEDPVRPEVPEAIK 649
+++A +D + E+ DD S + + LT + V+G+ DP R EV +I+
Sbjct: 562 LALATRDTPPKREEMV---------LDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQ 612
Query: 650 KCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLL 709
C+ AGI + M+TGDN TA +I + GI E+ + + + R D+ +Q
Sbjct: 613 LCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEE---VADRAYTGREFDDLPLAEQR-- 667
Query: 710 DKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
+ R AR PS K +V+ + + E+ A+TGDG ND PALKKA++G AMG
Sbjct: 668 -EACRRACCFARVEPSHKSKIVE-----YLQSYDEITAMTGDGVNDAPALKKAEIGIAMG 721
Query: 770 ITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGAC 829
+GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V+ F+ A
Sbjct: 722 -SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEVVCIFLTAA 780
Query: 830 AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALIS 879
L VQ+LWVNL+ D L + AL P D++ R P + LIS
Sbjct: 781 LGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLIS 830
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 256 bits (653), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 226/760 (29%), Positives = 359/760 (47%), Gaps = 114/760 (15%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGEL 229
VIR E I ++VVGD+ ++K GD +PAD +I +N K+D SSLTGES+ +
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 205
Query: 230 F---DPM-----VLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXXXXXXXXXX 281
F +P+ T+ +EG+ + +V G + G I TL
Sbjct: 206 FTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATL----------------- 248
Query: 282 XXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQ 341
S L+ T +A +I + I + V + +S
Sbjct: 249 ---------------------------ASGLEGGQTPIAAEIEHFIHIITGVAVFLGVS- 280
Query: 342 YCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNN 401
+ + ++E +A+ F++G+ +V VPEGL VT+ L + K+M + N
Sbjct: 281 FFILSLILEYTWLEAV-------IFLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNC 331
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYED---IPEDIAS 458
LV++L+A ET+G+ + ICSDKTGTLT NRMT + + Q E+ + D S
Sbjct: 332 LVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTS 390
Query: 459 KIVEGISVNSGYTSKIMAPENANELP----KQVGNKTECALLGFVVAIGKNYQTVRDDLP 514
+S +G ++ + N LP G+ +E ALL + + + +R
Sbjct: 391 ATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMR---- 446
Query: 515 EEVFTRVY--TFNSVRKSMSTVIPKKNG----YRVYTKGASEIILKKCS--YIYGRNGHL 566
E +T++ FNS K ++ N + + KGA E IL +CS I+G+ L
Sbjct: 447 -ERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPL 505
Query: 567 EKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVS 626
++ KD +N + G R + + F+ D+ + D D + +
Sbjct: 506 DEELKDA----FQNAYLELGGLGERVLGFCHL-FLPDEQFPEGFQFDTD----DVNFPLD 556
Query: 627 HLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYL 686
+L + +I + DP R VP+A+ KC+ AGI + MVTGD+ TA++IA GI+ G + +
Sbjct: 557 NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETV 616
Query: 687 ILEGKEFNRRV-----RDNNGEVQQ--NLLDKVWPRLR---------VLARSSPSDKYTL 730
N V RD V +L D +L V AR+SP K +
Sbjct: 617 EDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLII 676
Query: 731 VKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFS 790
V+G +VAVTGDG ND PA KKAD+G AMGI G+DV+K+A+D+IL DDNF+
Sbjct: 677 VEG-----CQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFA 731
Query: 791 SIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDT 850
SIV V GR ++D++ K + + LT N+ + I A PL V +L ++L D
Sbjct: 732 SIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDM 791
Query: 851 LASLALATEMPTPDLLLRKPYG-RTKALISKTMMKNIIGQ 889
+ +++LA E D++ R+P +T L+++ ++ GQ
Sbjct: 792 VPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQ 831
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 225/760 (29%), Positives = 358/760 (47%), Gaps = 114/760 (15%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGEL 229
VIR E I ++VVGD+ ++K GD +PAD +I +N K+D SSLTGES+ +
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRSPD 199
Query: 230 F---DPM-----VLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXXXXXXXXXX 281
F +P+ T+ +EG+ + +V G + G I TL
Sbjct: 200 FTNENPLETRNIAFFSTNCVEGTARGIVVYTGDRTVMGRIATL----------------- 242
Query: 282 XXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQ 341
S L+ T +A +I + I + V + +S
Sbjct: 243 ---------------------------ASGLEGGQTPIAAEIEHFIHIITGVAVFLGVS- 274
Query: 342 YCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNN 401
+ + ++E +A+ F++G+ +V VPEGL VT+ L + K+M + N
Sbjct: 275 FFILSLILEYTWLEAV-------IFLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNC 325
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYED---IPEDIAS 458
LV++L+A ET+G+ + ICS KTGTLT NRMT + + Q E+ + D S
Sbjct: 326 LVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMW-SDNQIHEADTTENQSGVSFDKTS 384
Query: 459 KIVEGISVNSGYTSKIMAPENANELP----KQVGNKTECALLGFVVAIGKNYQTVRDDLP 514
+S +G ++ + N LP G+ +E ALL + + + +R
Sbjct: 385 ATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDASESALLKCIELCCGSVKEMR---- 440
Query: 515 EEVFTRVY--TFNSVRKSMSTVIPKKNG----YRVYTKGASEIILKKCS--YIYGRNGHL 566
E +T++ FNS K ++ N + + KGA E IL +CS I+G+ L
Sbjct: 441 -ERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPERILDRCSSILIHGKEQPL 499
Query: 567 EKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVS 626
++ KD +N + G R + + F+ D+ + D D + +
Sbjct: 500 DEELKDA----FQNAYLELGGLGERVLGFCHL-FLPDEQFPEGFQFDTD----DVNFPLD 550
Query: 627 HLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYL 686
+L + +I + DP R VP+A+ KC+ AGI + MVTGD+ TA++IA GI+ G + +
Sbjct: 551 NLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETV 610
Query: 687 ILEGKEFNRRV-----RDNNGEVQQ--NLLDKVWPRLR---------VLARSSPSDKYTL 730
N V RD V +L D +L V AR+SP K +
Sbjct: 611 EDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFARTSPQQKLII 670
Query: 731 VKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFS 790
V+G +VAVTGDG ND PA KKAD+G AMGI G+DV+K+A+D+IL DDNF+
Sbjct: 671 VEG-----CQRQGAIVAVTGDGVNDSPASKKADIGVAMGIAGSDVSKQAADMILLDDNFA 725
Query: 791 SIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDT 850
SIV V GR ++D++ K + + LT N+ + I A PL V +L ++L D
Sbjct: 726 SIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFIIANIPLPLGTVTILCIDLGTDM 785
Query: 851 LASLALATEMPTPDLLLRKPYG-RTKALISKTMMKNIIGQ 889
+ +++LA E D++ R+P +T L+++ ++ GQ
Sbjct: 786 VPAISLAYEQAESDIMKRQPRNPKTDKLVNEQLISMAYGQ 825
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 241 bits (616), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 250/892 (28%), Positives = 410/892 (45%), Gaps = 148/892 (16%)
Query: 32 KINEYG-GVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNII-PPKPSKTFLQLVWEAL 89
+IN++ V E+ +K TS +GL S R+ G N + PP+ + +++ + L
Sbjct: 50 EINDHQLSVAELEQKYQTSATKGLSASLAAELLLRD--GPNALRPPRGTPEYVKFARQ-L 106
Query: 90 QDVTLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAXXXXXXXXXXXTAFNDY 149
++ +AA + L ++F E + ++ Y + A F
Sbjct: 107 AGGLQCLMWVAAAICL-IAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGYYQEFKST 165
Query: 150 SKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSND 209
+ F+ L Q + VIR + QI +VVGD+ ++K GD +PAD ++Q+
Sbjct: 166 NIIASFKNLVPQ-----QATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQG 220
Query: 210 LKIDESSLTGESD---------HVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGI 260
K+D SSLTGES+ H E + S T +EG+ + +V G + G
Sbjct: 221 RKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS-TMCLEGTAQGLVVNTGDRTIIGR 279
Query: 261 IFTLLGATXXXXXXXXXXXXXXXXXXXXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLA 320
I +L S +E +EK T +A
Sbjct: 280 IASL-----------------------ASGVE-------------NEK--------TPIA 295
Query: 321 IQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEG 380
I+I + IA L ++ + + V + + R V FFM ++V VPEG
Sbjct: 296 IEIEHFVDIIAGLAILFGATFFIVAMCI------GYTFLRAMV-FFM---AIVVAYVPEG 345
Query: 381 LPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCE 440
L VT+ L+ + K++ N +V++L+A ET+G+ + ICSDKTGTLT NRMT V
Sbjct: 346 LLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMT-----VSH 400
Query: 441 VQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIM---------APENANELPKQV--GN 489
+ + N D ED + + + S +++ + ++A +PK++ G+
Sbjct: 401 LWFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGD 460
Query: 490 KTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTV-IPKKNGYRVYTKGA 548
+E ALL F N R+ P+ + N + S+ T+ P+ + + KGA
Sbjct: 461 ASETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGA 520
Query: 549 SEIILKKCSYIYGRNGHL---EKFTKDMQ------GRLVRNVIEPMACDGLRTISIAYKD 599
E +L++CS I + L E++ + Q G L V+ G + ++ KD
Sbjct: 521 PERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVL------GFCQLYLSEKD 574
Query: 600 FVTDKAEINQVHIEGDPNWDDES-NI-VSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGIT 657
+ A +D E+ N S L+ ++ + DP R VP+A+ KC+ AGI
Sbjct: 575 YPPGYA------------FDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIR 622
Query: 658 IRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKEFNRR-----------VRD 699
+ MVTGD+ TA++IA GI+ G + L + + NR+ ++D
Sbjct: 623 VIMVTGDHPITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKD 682
Query: 700 -NNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPA 758
+ E+ + L + P + V AR+SP K +V+ ++ A +VAVTGDG ND PA
Sbjct: 683 MDPSELVEAL--RTHPEM-VFARTSPQQKLVIVESC--QRLGA---IVAVTGDGVNDSPA 734
Query: 759 LKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNV 818
LKKAD+G AMGI G+D AK A+D+IL DDNF+SIV V GR ++D++ K + + LT N+
Sbjct: 735 LKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNI 794
Query: 819 VAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 870
+ I PL + +L++ L D S++LA E D++ +P
Sbjct: 795 PELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRP 846
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 191/564 (33%), Positives = 289/564 (51%), Gaps = 70/564 (12%)
Query: 366 FMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 425
F++G+ +V VPEGL VT+ L + K+M + N LV++L+A ET+G+ + ICSDKTGT
Sbjct: 328 FLIGI--IVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGT 385
Query: 426 LTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMA--------- 476
LT NRMT V + + N D E+ + + S S+I A
Sbjct: 386 LTQNRMT-----VAHMWFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQA 440
Query: 477 -PENANELPKQV-GNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTV 534
+N L + V G+ +E ALL + + Q +RD P+ V FNS K ++
Sbjct: 441 GQDNVPILKRSVAGDASESALLKCIELCCGSVQGMRDRNPKIV---EIPFNSTNKYQLSI 497
Query: 535 IPKKNG----YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 590
+ Y + KGA E IL +CS I NG E +DM+ +N + G
Sbjct: 498 HENEKSSESRYLLVMKGAPERILDRCSTIL-LNGAEEPLKEDMK-EAFQNAYLELGGLGE 555
Query: 591 RTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIE---DPVRPEVPEA 647
R + + DK + EG P DE N + T LC +G+ DP R VP+A
Sbjct: 556 RVLGFCHFALPEDK------YNEGYPFDADEPNFPT--TDLCFVGLMAMIDPPRAAVPDA 607
Query: 648 IKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGED-------YLILEGKEFNRR---- 696
+ KC+ AGI + MVTGD+ TA++IA GI+ G + L + + N R
Sbjct: 608 VGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKA 667
Query: 697 -------VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVT 749
++D + EV ++L + V AR+SP K +V+G +VAVT
Sbjct: 668 CVVHGSDLKDLSTEVLDDILH--YHTEIVFARTSPQQKLIIVEG-----CQRQGAIVAVT 720
Query: 750 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKF 809
GDG ND PALKKAD+G AMGI+G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K
Sbjct: 721 GDGVNDSPALKKADIGVAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKS 780
Query: 810 LQFQLTVNVVAV---IVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLL 866
+ + LT N+ + +V IG + PL V +L ++L D + +++LA E D++
Sbjct: 781 IAYTLTSNIPEITPFLVFIIGNVPL---PLGTVTILCIDLGTDMVPAISLAYEQAESDIM 837
Query: 867 LRKPYG-RTKALISKTMMKNIIGQ 889
R+P +T L+++ ++ GQ
Sbjct: 838 KRQPRNPKTDKLVNERLISMAYGQ 861
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 145 AFNDYSKEKQFR---GLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPAD 201
F+ Y + K R +N + + VIR E I +V GD+ ++K GD +PAD
Sbjct: 150 CFSYYQEAKSSRIMDSFKNMVP--QQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPAD 207
Query: 202 GILIQSNDLKIDESSLTGESDHVKKGELF---DPM-----VLSGTHVMEGSGKMVVTAVG 253
+I ++ K+D SSLTGES+ + F +P+ T+ +EG+ + VV G
Sbjct: 208 LRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTG 267
Query: 254 VNSQAGIIFTL 264
+ G I TL
Sbjct: 268 DRTVMGRIATL 278
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 166/703 (23%), Positives = 311/703 (44%), Gaps = 136/703 (19%)
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKK 226
K V+R + + +V GDI IK GD++PAD L++ + LK+D+S+LTGES V K
Sbjct: 131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190
Query: 227 GELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATXXXXXXXXXXXXXXXXXX 286
V SG+ +G + VV A GV++ G L+ +T
Sbjct: 191 HP--GQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDST------------------ 230
Query: 287 XXSAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKK 346
+ Q LT + + +IAI V+ +I Y +++
Sbjct: 231 --------------------NQVGHFQKVLTAIG---NFCICSIAIGMVIEIIVMYPIQR 267
Query: 347 FVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHL 406
+R+ + +V +L+ +P +P +++++A ++ + + + +
Sbjct: 268 R----------KYRDGIDNLLV---LLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRM 314
Query: 407 DACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISV 466
A E M +CSDKTGTLT N+++ V + EV K + K + + +
Sbjct: 315 TAIEEMAGMDVLCSDKTGTLTLNKLS-VDKNLVEVFCKGVEK-------------DQVLL 360
Query: 467 NSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNS 526
+ S++ EN + + + A++G + + +R+ FN
Sbjct: 361 FAAMASRV---ENQDAI--------DAAMVGMLADPKEARAGIRE-------VHFLPFNP 402
Query: 527 V--RKSMSTVIPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEP 584
V R +++ + N +RV +KGA E IL+ L K + D+ + V ++I+
Sbjct: 403 VDKRTALTYIDGSGNWHRV-SKGAPEQILE-----------LAKASNDLSKK-VLSIIDK 449
Query: 585 MACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEV 644
A GLR++++A + V +K + G P W+ + ++ + DP R +
Sbjct: 450 YAERGLRSLAVA-RQVVPEKTK----ESPGAP-WE----------FVGLLPLFDPPRHDS 493
Query: 645 PEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEV 704
E I++ G+ ++M+TGD + + + G+ L G +D N +
Sbjct: 494 AETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTH-----KDAN--L 546
Query: 705 QQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADV 764
++++ + A P KY +VK K+ + +V +TGDG ND PALKKAD+
Sbjct: 547 ASIPVEELIEKADGFAGVFPEHKYEIVK-----KLQERKHIVGMTGDGVNDAPALKKADI 601
Query: 765 GFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVA 824
G A+ TD A+ ASDI+LT+ S I+ AV+ R ++ + + + +++ + ++
Sbjct: 602 GIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT-IRIVFG 659
Query: 825 FIGACAVQDSPLKAVQMLWVNLIMD-TLASLA--LATEMPTPD 864
F+ + + A +L + ++ D T+ +++ PTPD
Sbjct: 660 FMLIALIWEFDFSAFMVLIIAILNDGTIMTISKDRVKPSPTPD 702
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 107 bits (268), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 119/526 (22%), Positives = 224/526 (42%), Gaps = 93/526 (17%)
Query: 354 WKAIYFRE--FVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACET 411
W + ++R V+ + + ++ VP GLP VT ++A + K +V+ L A E+
Sbjct: 309 WVSSFYRSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIES 368
Query: 412 MGNATAICSDKTGTLTTNRMTAVQAY-VCEVQYKNIPKYEDIPEDIASKIVEGISVNSGY 470
+ +CSDKTGTLT N+++ Y V V PED+
Sbjct: 369 LAGVEILCSDKTGTLTKNKLSLHDPYTVAGVD----------PEDL-------------- 404
Query: 471 TSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKS 530
++ A K+ + + A L + K Y + L + + + F+ V K
Sbjct: 405 ---MLTACLAASRKKKGIDAIDKAFLKSL----KYYPRAKSVLSKYKVLQFHPFDPVSKK 457
Query: 531 MSTVIPKKNGYRVY-TKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDG 589
+ V+ G R+ KGA +LK + +++ K N + A G
Sbjct: 458 VVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYK--------NKVAEFATRG 509
Query: 590 LRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIK 649
R++ +A K G+ +W+ I+ + C+ DP R + + +
Sbjct: 510 FRSLGVARK--------------RGEGSWE----ILGIMPCM------DPPRHDTYKTVC 545
Query: 650 KCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLL 709
+ + G++I+M+TGD + AR + + G+ G + E + D G + +
Sbjct: 546 EAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAE-RLGLGGGGDMPGSEVYDFV 601
Query: 710 DKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
+ A P KY +V+ + +VA+TGDG ND P+LKKAD G A+
Sbjct: 602 EAA----DGFAEVFPQHKYNVVEILQQRGY-----LVAMTGDGVNDAPSLKKADTGIAVE 652
Query: 770 ITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGA- 828
+D A+ A+DI+ +I+ A+ R ++ + ++ +++ +++ I F+G
Sbjct: 653 -GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRIALSIHLEI--FLGLW 709
Query: 829 CAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRT 874
A+ + L ++++ + D +A+LA+A + PY +T
Sbjct: 710 IAILNRSLNIELVVFIAIFAD-VATLAIAYD--------NAPYSQT 746
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 167 KFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSND-LKIDESSLTGESDHVK 225
K V+R LK+I ++V GDI Q++ G ++PADG ++ + L++D+S+LTGES V
Sbjct: 179 KAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVD 238
Query: 226 KGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGAT 268
K + V + + V G +V+TA G N+ G L+ A
Sbjct: 239 KHK--GDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAA 279
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 89.7 bits (221), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 88/189 (46%), Gaps = 43/189 (22%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNR 695
+EDP++ PE I + Q++GI I M+TGD+ TA ++A GI K
Sbjct: 551 VEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIKK--------------- 595
Query: 696 RVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTND 755
V+A P DK +V + D + +VA+ GDG ND
Sbjct: 596 ----------------------VVAEIMPEDKSRIVSELKDKGL-----IVAMAGDGVND 628
Query: 756 GPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLT 815
PAL KAD+G AMG TGTDVA E++ + L + I KA + +I + L F
Sbjct: 629 APALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKARRLSESTMSNIRQNLFFAFI 687
Query: 816 VNVVAVIVA 824
NV+ V +A
Sbjct: 688 YNVLGVPLA 696
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 34/62 (54%)
Query: 366 FMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGT 425
+ V+VL++A P L LA +S+ V K + L+++ +A E M + DKTGT
Sbjct: 371 LIAAVSVLIIACPCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGT 430
Query: 426 LT 427
LT
Sbjct: 431 LT 432
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 44/189 (23%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 493
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 494 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 527
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 812
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 586
Query: 813 QLTVNVVAV 821
L NV+ +
Sbjct: 587 ALIYNVILI 595
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 354 WKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMG 413
W I + F + VLVVA P LA +L + K + L+++ DA E
Sbjct: 265 WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 324
Query: 414 NATAICSDKTGTLTTNR 430
TA+ DKTGTLT +
Sbjct: 325 KVTAVIFDKTGTLTKGK 341
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 153 KQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKI 212
K+ GLQ + VIR + + V ++ VGDI ++ G+ +P DG++++ +
Sbjct: 125 KKLVGLQAKTA-----VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 178
Query: 213 DESSLTGESDHVKKGE 228
DES ++GE V K +
Sbjct: 179 DESMISGEPVPVLKSK 194
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 90/189 (47%), Gaps = 44/189 (23%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 571
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 572 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 605
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 812
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I + + +
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFW 664
Query: 813 QLTVNVVAV 821
L NV+ +
Sbjct: 665 ALIYNVILI 673
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 36/77 (46%)
Query: 354 WKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMG 413
W I + F + VLVVA P LA +L + K + L+++ DA E
Sbjct: 343 WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAELGILIKNADALEVAE 402
Query: 414 NATAICSDKTGTLTTNR 430
TA+ DKTGTLT +
Sbjct: 403 KVTAVIFDKTGTLTKGK 419
Score = 37.0 bits (84), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 153 KQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKI 212
K+ GLQ + VIR + + V ++ VGDI ++ G+ +P DG++++ +
Sbjct: 203 KKLVGLQAKTA-----VVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 256
Query: 213 DESSLTGESDHVKK 226
DES ++GE V K
Sbjct: 257 DESMISGEPVPVLK 270
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 199
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 200 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 233
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 806
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNR 430
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 82/174 (47%), Gaps = 44/174 (25%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ +E
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAIS-----------------RE 199
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
N LD V+A P K VK K+ A +EVVA GDG
Sbjct: 200 LN--------------LD------LVIAEVLPHQKSEEVK-----KLQA-KEVVAFVGDG 233
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 806
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R I
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKI 286
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNR 430
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGK 47
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 76/177 (42%), Gaps = 47/177 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+ +DY
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL----DDYFA----- 188
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
+V P + KY V A+ GDG
Sbjct: 189 ------------------EVLPHEKAEKVKEVQQKY----------------VTAMVGDG 214
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKF 809
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y SKF
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTY---SKF 267
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 74/174 (42%), Gaps = 44/174 (25%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+ +DY
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL----DDYFA----- 188
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
+V P + KY V A+ GDG
Sbjct: 189 ------------------EVLPHEKAEKVKEVQQKY----------------VTAMVGDG 214
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 806
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y +
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKL 267
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 78/169 (46%), Gaps = 44/169 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + +TGDN +A +I+ +E
Sbjct: 137 IIAVSDTLKESAKPAVQELKRXGIKVGXITGDNWRSAEAIS-----------------RE 179
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
N LD V+A P K VK + +EVVA GDG
Sbjct: 180 LN--------------LD------LVIAEVLPHQKSEEVKKL------QAKEVVAFVGDG 213
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRN 801
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+ R
Sbjct: 214 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAIQLSRK 261
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 64/150 (42%), Gaps = 52/150 (34%)
Query: 647 AIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQ 706
A+++ +R GI + +TGDN +A +I+ +E N
Sbjct: 30 AVQELKRXGIKVGXITGDNWRSAEAIS-----------------RELN------------ 60
Query: 707 NLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGF 766
LD V+A P K VK + +EVVA GDG ND PAL +AD+G
Sbjct: 61 --LD------LVIAEVLPHQKSEEVKKL------QAKEVVAFVGDGINDAPALAQADLGI 106
Query: 767 AMGITGTDVAKEASDIILTDDNFSSIVKAV 796
A+G + DI+L D+ +V A+
Sbjct: 107 AVG---------SGDIVLIRDDLRDVVAAI 127
>pdb|2YJ3|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 85/206 (41%), Gaps = 60/206 (29%)
Query: 604 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 660
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 661 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 720
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 721 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 780
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 781 DIILTDDNFSSIVKAVMWGRNVYDSI 806
DIIL ++ +++ + + + ++I
Sbjct: 235 DIILVSNDIGTLLGLIKNRKRLSNAI 260
>pdb|2YJ4|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ4|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|A Chain A, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ5|B Chain B, Conformational Changes In The Catalytic Domain Of The Cpx-
Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|A Chain A, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
pdb|2YJ6|B Chain B, Conformational Changes In The Catalytic Domain Of The
Cpx-Atpase Copb-B Upon Nucleotide Binding
Length = 263
Score = 37.0 bits (84), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 60/193 (31%)
Query: 604 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 660
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 661 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 720
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 721 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 780
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 781 DIILTDDNFSSIV 793
DIIL ++ +++
Sbjct: 235 DIILVSNDIGTLL 247
>pdb|2IYE|A Chain A, Structure Of Catalytic Cpx-atpase Domain Copb-b
pdb|2IYE|C Chain C, Structure Of Catalytic Cpx-atpase Domain Copb-b
Length = 263
Score = 36.6 bits (83), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 79/193 (40%), Gaps = 60/193 (31%)
Query: 604 KAEINQ---VHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM 660
KAE N V+I G+P + I D RP + + ++K + G+ I +
Sbjct: 112 KAENNNDIAVYINGEP--------------IASFNISDVPRPNLKDYLEKLKNEGLKIII 157
Query: 661 VTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLA 720
++GD + + ++ KE N + E NL
Sbjct: 158 LSGDKEDKVKELS-----------------KELNIQ------EYYSNL------------ 182
Query: 721 RSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEAS 780
SP DK +++ K+ V + GDG ND AL ADV AMG G D++K +
Sbjct: 183 --SPEDKVRIIE-----KLKQNGNKVLMIGDGVNDAAALALADVSVAMG-NGVDISKNVA 234
Query: 781 DIILTDDNFSSIV 793
DIIL ++ +++
Sbjct: 235 DIILVSNDIGTLL 247
>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain
pdb|2VOY|F Chain F, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 113
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 153 KQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKI 212
K+ GLQ + VIR + + V ++ VGDI ++ G+ +P DG++++ +
Sbjct: 4 KKLVGLQAK-----TAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-V 57
Query: 213 DESSLTGESDHVKK 226
DES ++GE V K
Sbjct: 58 DESMISGEPVPVLK 71
>pdb|4DW8|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Na Crystal Form I
pdb|4DWO|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase (Target Efi-900331) From Bacteroides
Thetaiotaomicron With Bound Mg Crystal Form Ii
Length = 279
Score = 35.8 bits (81), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 739 ISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 787
I RE V GDG ND +K A +G AMG V K A I LT+D
Sbjct: 209 IGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTND 257
>pdb|2VOY|H Chain H, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 48
Score = 35.0 bits (79), Expect = 0.26, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 360 REFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHL 406
R + +F + V + V A+PEGLP +T LA ++M K N +VR L
Sbjct: 2 RGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKKNAIVRSL 48
>pdb|3NIW|A Chain A, Crystal Structure Of A Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Thetaiotaomicron
Length = 279
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 23/49 (46%)
Query: 739 ISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 787
I RE V GDG ND +K A G A G V K A I LT+D
Sbjct: 209 IGXTREEVIAIGDGYNDLSXIKFAGXGVAXGNAQEPVKKAADYITLTND 257
>pdb|3A6H|A Chain A, W154a Mutant Creatininase
pdb|3A6H|B Chain B, W154a Mutant Creatininase
pdb|3A6H|C Chain C, W154a Mutant Creatininase
pdb|3A6H|D Chain D, W154a Mutant Creatininase
pdb|3A6H|E Chain E, W154a Mutant Creatininase
pdb|3A6H|F Chain F, W154a Mutant Creatininase
Length = 260
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 563 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 621
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYADFVKDPAVIQQLYPEGFLGWDIE 177
Query: 622 SNIV 625
V
Sbjct: 178 HGGV 181
>pdb|3R4C|A Chain A, Divergence Of Structure And Function Among Phosphatases Of
The Haloalkanoate (Had) Enzyme Superfamily: Analysis Of
Bt1666 From Bacteroides Thetaiotaomicron
Length = 268
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 746 VAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
+ GDG ND P LK A +G AMG V A + T DN S + KA+
Sbjct: 213 IMACGDGGNDIPMLKAAGIGVAMGNASEKVQSVADFVTDTVDN-SGLYKAL 262
>pdb|3A6G|A Chain A, W154f Mutant Creatininase
pdb|3A6G|B Chain B, W154f Mutant Creatininase
pdb|3A6G|C Chain C, W154f Mutant Creatininase
pdb|3A6G|D Chain D, W154f Mutant Creatininase
pdb|3A6G|E Chain E, W154f Mutant Creatininase
pdb|3A6G|F Chain F, W154f Mutant Creatininase
Length = 260
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 563 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 621
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYFDFVKDPAVIQQLYPEGFLGWDIE 177
Query: 622 SNIV 625
V
Sbjct: 178 HGGV 181
>pdb|1J2T|A Chain A, Creatininase Mn
pdb|1J2T|B Chain B, Creatininase Mn
pdb|1J2T|C Chain C, Creatininase Mn
pdb|1J2T|D Chain D, Creatininase Mn
pdb|1J2T|E Chain E, Creatininase Mn
pdb|1J2T|F Chain F, Creatininase Mn
pdb|1J2U|A Chain A, Creatininase Zn
pdb|1J2U|B Chain B, Creatininase Zn
pdb|1J2U|C Chain C, Creatininase Zn
pdb|1J2U|D Chain D, Creatininase Zn
pdb|1J2U|E Chain E, Creatininase Zn
pdb|1J2U|F Chain F, Creatininase Zn
pdb|1V7Z|A Chain A, Creatininase-Product Complex
pdb|1V7Z|B Chain B, Creatininase-Product Complex
pdb|1V7Z|C Chain C, Creatininase-Product Complex
pdb|1V7Z|D Chain D, Creatininase-Product Complex
pdb|1V7Z|E Chain E, Creatininase-Product Complex
pdb|1V7Z|F Chain F, Creatininase-Product Complex
pdb|3A6D|A Chain A, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|B Chain B, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|C Chain C, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|D Chain D, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|E Chain E, Creatininase Complexed With 1-Methylguanidine
pdb|3A6D|F Chain F, Creatininase Complexed With 1-Methylguanidine
Length = 260
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 563 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 621
NGH E ++G L + + + ++Y DFV D A I Q++ EG WD E
Sbjct: 118 NGHYENSMFIVEGIDLALRELRYAGIQDFKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIE 177
Query: 622 SNIV 625
V
Sbjct: 178 HGGV 181
>pdb|3A6J|A Chain A, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|B Chain B, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|C Chain C, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|D Chain D, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|E Chain E, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6J|F Chain F, E122q Mutant Creatininase Complexed With Creatine
pdb|3A6K|A Chain A, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|B Chain B, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|C Chain C, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|D Chain D, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|E Chain E, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6K|F Chain F, The E122q Mutant Creatininase, Mn-Zn Type
pdb|3A6L|A Chain A, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|B Chain B, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|C Chain C, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|D Chain D, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|E Chain E, E122q Mutant Creatininase, Zn-Zn Type
pdb|3A6L|F Chain F, E122q Mutant Creatininase, Zn-Zn Type
Length = 260
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 590 LRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIV 625
+ + ++Y DFV D A I Q++ EG WD E V
Sbjct: 146 FKVVVLSYWDFVKDPAVIQQLYPEGFLGWDIEHGGV 181
>pdb|2KIJ|A Chain A, Solution Structure Of The Actuator Domain Of The Copper-
Transporting Atpase Atp7a
Length = 124
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 187 GDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDPMVLSGTHVMEGSGK 246
GDI ++ G P DG +I+ + + +DES +TGE+ V K V++G+ GS
Sbjct: 45 GDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEAMPVAKKP--GSTVIAGSINQNGSLL 101
Query: 247 MVVTAVGVNSQAGIIFTLL 265
+ T VG ++ I L+
Sbjct: 102 ICATHVGADTTLSQIVKLV 120
>pdb|1Q3K|A Chain A, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|B Chain B, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|C Chain C, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|D Chain D, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|E Chain E, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
pdb|1Q3K|F Chain F, Crystal Structure Of Creatinine Amidohydrolase
(Creatininase)
Length = 259
Score = 30.0 bits (66), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 563 NGHLEKFTKDMQG-RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDE 621
NGH E ++G L + + + ++Y DFV D A I +++ EG WD E
Sbjct: 117 NGHYENSMFIVEGIDLALRELRYAGIHDFKVVVLSYWDFVKDPAVIQRLYPEGFLGWDIE 176
Query: 622 SNIV 625
V
Sbjct: 177 HGGV 180
>pdb|2RAR|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily.
pdb|2RAV|A Chain A, X-Ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-Transfer Superfamily
Length = 261
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 750 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
GDG ND L+ A +G AMG DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
>pdb|1YMQ|A Chain A, Had Superfamily Phosphotransferase Substrate
Diversification: Structure And Function Analysis Of The
Had Subclass Iib Sugar Phosphatase Bt4131
pdb|2RB5|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily.
pdb|2RBK|A Chain A, X-ray Crystallographic Structures Show Conservation Of A
Trigonal- Bipyramidal Intermediate In A
Phosphoryl-transfer Superfamily
Length = 261
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 750 GDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
GDG ND L+ A +G AMG DV K A+D + + I KA+
Sbjct: 210 GDGGNDISMLRHAAIGVAMGQAKEDV-KAAADYVTAPIDEDGISKAM 255
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,069,549
Number of Sequences: 62578
Number of extensions: 1265498
Number of successful extensions: 2877
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2749
Number of HSP's gapped (non-prelim): 88
length of query: 1119
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1010
effective length of database: 8,152,335
effective search space: 8233858350
effective search space used: 8233858350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)