RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10301
(1119 letters)
>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
plasma membrane of eukaryotes , out of the cell. In some
organisms, this type of pump may also be found in
vacuolar membranes. In humans and mice, at least, there
are multiple isoforms of the PMCA pump with overlapping
but not redundant functions. Accordingly, there are no
human diseases linked to PMCA defects, although
alterations of PMCA function do elicit physiological
effects. The calcium P-type ATPases have been
characterized as Type IIB based on a phylogenetic
analysis which distinguishes this group from the Type IIA
SERCA calcium pump. A separate analysis divides Type IIA
into sub-types (SERCA and PMR1) which are modelled by
TIGR01116 and TIGR01522. This model is well separated
from those.
Length = 944
Score = 1171 bits (3031), Expect = 0.0
Identities = 492/987 (49%), Positives = 630/987 (63%), Gaps = 86/987 (8%)
Query: 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTL 94
+ GG I KL T NEG+ S + LE R +V+G N +P KP K+FLQ+VW AL D TL
Sbjct: 41 KLGGAEGIATKLKTDLNEGVRLSSSTLERREKVYGKNELPEKPPKSFLQIVWAALSDQTL 100
Query: 95 IILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQ 154
I+L +AA+VSL L PG +T+ WIEG AILVSVI+VVLVTA NDY KE Q
Sbjct: 101 ILLSVAAVVSLVLGLPEPG----EGKADTETGWIEGVAILVSVILVVLVTAVNDYKKELQ 156
Query: 155 FRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDE 214
FR L N+ + K AVIR + +QI + DIVVGDI + GD++PADG+ I L+IDE
Sbjct: 157 FRQL-NREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDE 215
Query: 215 SSLTGESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVK 274
SS+TGESD +KKG + DP +LSGT V EGSG+M+VTAVGVNS G + L
Sbjct: 216 SSITGESDPIKKGPVQDPFLLSGTVVNEGSGRMLVTAVGVNSFGGKLMMELRQAG----- 270
Query: 275 QEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILT 334
E + LQ KL++LA IG G A+L
Sbjct: 271 --------------------------------EDSTPLQEKLSELAGLIGKFGMGSAVLL 298
Query: 335 VVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVK 394
++L +Y + D + F+ F++ VT++VVAVPEGLPLAVT++LAYS+K
Sbjct: 299 FLVLSLRYVFRIIR-GDGRDTEEDAQTFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMK 357
Query: 395 KMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPE 454
KMMKDNNLVRHL ACETMG+ATAICSDKTGTLT N M+ VQ Y+ E ++ ++P+
Sbjct: 358 KMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGEQRFNVRDVLRNVPK 417
Query: 455 DIASKIVEGISVNSGYTSKIMAPENANE--LPKQVGNKTECALLGFVVAIGKNYQTVRDD 512
+ + +VEGIS+NS + E + +G+KTECALL F + + ++YQ VR
Sbjct: 418 HVRNILVEGISLNSS------SEEVVDRGGKRAFIGSKTECALLDFGLLLLRDYQEVR-- 469
Query: 513 LPEEVFTRVYTFNSVRKSMSTVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTK 571
EE ++Y FNS RK MS V+ G YR + KGASEI+LK C NG +
Sbjct: 470 -AEEKVVKIYPFNSERKFMSVVVKHSGGKYREFRKGASEIVLKPCRKRLDSNGEATPISD 528
Query: 572 DMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCL 631
D + R +VIEP+A D LRTI +AY+DF ++ P D + LT +
Sbjct: 529 DDKDR-CADVIEPLASDALRTICLAYRDFAPEEF----------PRKDYPNK---GLTLI 574
Query: 632 CVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 691
V+GI+DP+RP V EA+++CQRAGIT+RMVTGDNI+TA++IA CGI+ G L +EGK
Sbjct: 575 GVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGG--LAMEGK 632
Query: 692 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 751
EF V +D + P+LRVLARSSP DK LV + D EVVAVTGD
Sbjct: 633 EFRSLV--------YEEMDPILPKLRVLARSSPLDKQLLVLMLKDM-----GEVVAVTGD 679
Query: 752 GTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQ 811
GTND PALK ADVGF+MGI+GT+VAKEASDIIL DDNF+SIV+AV WGRNVYD+I KFLQ
Sbjct: 680 GTNDAPALKLADVGFSMGISGTEVAKEASDIILLDDNFASIVRAVKWGRNVYDNIRKFLQ 739
Query: 812 FQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPY 871
FQLTVNVVAVI+ F+G+C SPL AVQ+LWVNLIMDTLA+LALATE PT LL RKP
Sbjct: 740 FQLTVNVVAVILTFVGSCISSTSPLTAVQLLWVNLIMDTLAALALATEPPTEALLDRKPI 799
Query: 872 GRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFN 931
GR LIS++M KNI+GQA YQLV+ F +LF G + D+ + TI+FN
Sbjct: 800 GRNAPLISRSMWKNILGQAGYQLVVTFILLFAGGSIFDVSGPDEITSHQ-QGELNTIVFN 858
Query: 932 TFVLMTLFNEINARKIHGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGIAFATHSLT 991
TFVL+ LFNEINARK++ +RNVFEGLF N IF +I T QVIIV++GG F+T SL+
Sbjct: 859 TFVLLQLFNEINARKLY-ERNVFEGLFKNRIFVTIMGFTFGFQVIIVEFGGSFFSTVSLS 917
Query: 992 LEQWGWCLFFGVGTLVWQQIVTTVPTK 1018
+EQW C+ G+ +L++ ++ +P +
Sbjct: 918 IEQWIGCVLLGMLSLIFGVLLRLIPVE 944
>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 917
Score = 605 bits (1561), Expect = 0.0
Identities = 296/1014 (29%), Positives = 459/1014 (45%), Gaps = 137/1014 (13%)
Query: 16 RQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPP 75
E+ +L+TSP GL S+ +++ R + +G N +P
Sbjct: 7 NFSVNKSSSTPVTSETWHPLSVERNELLLELFTSPTTGL--SEEEVKRRLKKYGPNELPE 64
Query: 76 KPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILV 135
+ ++ L+ +D +I+L +AAL+S + + G + IL+
Sbjct: 65 EKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVDAGV-------------DAIVILL 111
Query: 136 SVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYG 195
V++ L+ +Y EK L+ K V+R + +I ++V GDI ++ G
Sbjct: 112 VVVINALLGFVQEYRAEKALEALKKM--SSPKAKVLRDGKFVEIPASELVPGDIVLLEAG 169
Query: 196 DLLPADGILIQSNDLKIDESSLTGESDHVKKGELF------------DPMVLSGTHVMEG 243
D++PAD L++S+DL++DES+LTGES V+K L D M+ SGT V+ G
Sbjct: 170 DVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNMLFSGTTVVSG 229
Query: 244 SGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAE 303
K +V A G ++ G I LL
Sbjct: 230 RAKGIVVATGFETEFGKIARLLPTKK---------------------------------- 255
Query: 304 KHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFV 363
E K+ LQ KL KL + + L V+ + +
Sbjct: 256 ---EVKTPLQRKLNKLGKFLLVLALVLGALVFVVGL-----------------FRGGNGL 295
Query: 364 R-FFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDK 422
F+ + + V AVPEGLP VT++LA ++M KDN +VR L+A ET+G+ ICSDK
Sbjct: 296 LESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDK 355
Query: 423 TGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANE 482
TGTLT N+MT + Y+ K+I + + + ++ + T +
Sbjct: 356 TGTLTQNKMTVKKIYINGGG-KDIDDKDLKDSPALLRFLLAAALCNSVTPE-------KN 407
Query: 483 LPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVI-PKKN 539
Q G+ TE AL+ F A + L E + + F+S RK MS ++ +
Sbjct: 408 GWYQAGDPTEGALVEF--AEKLGFSLDLSGLEVE-YPILAEIPFDSERKRMSVIVKTDEG 464
Query: 540 GYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKD 599
Y ++ KGA E+IL++C I G LE T++ L V E +A +GLR +++AYK
Sbjct: 465 KYILFVKGAPEVILERCKSI----GELEPLTEEGLRTLEEAVKE-LASEGLRVLAVAYKK 519
Query: 600 FVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIR 659
+ + IE D L L + GIEDP R +V EAI++ + AGI +
Sbjct: 520 LDRAEKDDEVDEIESD------------LVFLGLTGIEDPPREDVKEAIEELREAGIKVW 567
Query: 660 MVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVL 719
M+TGD++ TA +IA +CGI E L+++G E + + L ++ L V
Sbjct: 568 MITGDHVETAIAIAKECGIEAEAESALVIDGAELD--------ALSDEELAELVEELSVF 619
Query: 720 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 779
AR SP K +V+ + S VVA+TGDG ND PALK ADVG AMG GTD AKEA
Sbjct: 620 ARVSPEQKARIVEALQKSG-----HVVAMTGDGVNDAPALKAADVGIAMGGEGTDAAKEA 674
Query: 780 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACA-VQDSPLKA 838
+DI+L DDNF++IV AV+ GR VY +I KF+ + L+ NV V+ I + + PL
Sbjct: 675 ADIVLLDDNFATIVLAVVEGRRVYVNIKKFILYLLSKNVGEVLTLLIYSLFNLFFLPLTP 734
Query: 839 VQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIF 898
+Q+LW+NL+ D+L +LAL E P D++ R P G + L ++ + I I+F
Sbjct: 735 LQLLWINLLTDSLPALALGVEDPESDVMKRPPRGPEEGLFNRKIFWRFILIIGLLSAILF 794
Query: 899 GILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQRNVFE-GL 957
+ F L T F VL+ L + R R L
Sbjct: 795 ILTFLL--YLLGFIANTLGLDLFQALLQTTAFTVLVLIQLLLTLAVRSRG--RPFLSSLL 850
Query: 958 FTNPIFYSIWVITMVSQVIIVQYG---GIAFATHSLTLEQWGWCLFFGVGTLVW 1008
F+N + ++ ++ Q++I+ F L+L +W + + L
Sbjct: 851 FSNKYLWLALLVIIILQLLIIFLPPLNLKIFQPTPLSLFEWLIAIAVALLLLYI 904
>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD
superfamily, subfamily IC. The P-type ATPases are a
large family of trans-membrane transporters acting on
charged substances. The distinguishing feature of the
family is the formation of a phosphorylated intermediate
(aspartyl-phosphate) during the course of the reaction.
Another common name for these enzymes is the E1-E2
ATPases based on the two isolable conformations: E1
(unphosphorylated) and E2 (phosphorylated). Generally,
P-type ATPases consist of only a single subunit
encompassing the ATPase and ion translocation pathway,
however, in the case of the potassium (TIGR01497) and
sodium/potassium (TIGR01106) varieties, these functions
are split between two subunits. Additional small
regulatory or stabilizing subunits may also exist in
some forms. P-type ATPases are nearly ubiquitous in life
and are found in numerous copies in higher organisms (at
least 45 in Arabidopsis thaliana, for instance ).
Phylogenetic analyses have revealed that the P-type
ATPase subfamily is divided up into groups based on
substrate specificities and this is represented in the
various subfamily and equivalog models that have been
made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525,
IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++)
TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+,
H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and
K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++)
TIGR01524, IV (phospholipid, flippase) TIGR01652 and V
(unknown specificity) TIGR01657. The crystal structure
of one calcium-pumping ATPase and an analysis of the
fold of the catalytic domain of the P-type ATPases have
been published. These reveal that the catalytic core of
these enzymes is a haloacid dehalogenase(HAD)-type
aspartate-nucleophile hydrolase. The location of the
ATP-binding loop in between the first and second HAD
conserved catalytic motifs defines these enzymes as
members of subfamily I of the HAD superfamily (see also
TIGR01493, TIGR01509, TIGR01549, TIGR01544 and
TIGR01545). Based on these classifications, the P-type
ATPase _superfamily_ corresponds to the IC subfamily of
the HAD superfamily.
Length = 543
Score = 392 bits (1009), Expect = e-124
Identities = 194/734 (26%), Positives = 301/734 (41%), Gaps = 202/734 (27%)
Query: 133 ILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQI 192
IL V+V VL+ E R L +++ V+R K+I D+V GD+ +
Sbjct: 2 ILFLVLVFVLLVVKQKLKAEDILRSLSDRLVNTRPATVLRNGW-KEIPAKDLVPGDVVLV 60
Query: 193 KYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDP--------MVLSGTHVMEGS 244
K G+ +PADG+L+ +DES+LTGES+ V K L + +V +GT+V G+
Sbjct: 61 KSGETVPADGVLLSG-SCFVDESNLTGESNPVLKTALKETQSGTITGDLVFAGTYVFGGT 119
Query: 245 GKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEK 304
+VVT G+ + G I V +
Sbjct: 120 LIVVVTPTGILTTVGRI-------------------------------------AVVVKT 142
Query: 305 HDEKKSVLQAKLTKLAIQIG-YAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFV 363
E ++ LQ+K +L I +A+ + L + W + +
Sbjct: 143 GFETRTPLQSKRDRLENFIFILFLLLLALAVFLYLFIRG-----------WDPNSIFKAL 191
Query: 364 RFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKT 423
+ VLV+ VP LP AVT++LA ++ K LVR+L+A E +G +CSDKT
Sbjct: 192 LRA---LIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEELGKVDYLCSDKT 248
Query: 424 GTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANEL 483
GTLT N+MT Y+ + N +
Sbjct: 249 GTLTKNKMTLQGVYIDGGKEDNSSSLVAC-----------------------------DN 279
Query: 484 PKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG-YR 542
G+ E ALL + + + ++ V+ F+SV K MS ++ +G
Sbjct: 280 NYLSGDPMEKALLKSA---ELVGKADKGNKEYKIL-DVFPFSSVLKRMSVIVETPDGSDL 335
Query: 543 VYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVT 602
++ KGA E IL++C+ + E +A GLR ++ A K+
Sbjct: 336 LFVKGAPEFILERCN-------NYE------------EKYLELARQGLRVLAFASKELED 376
Query: 603 DKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVT 662
D L L +I EDP+RP+ E I++ + AGI + M+T
Sbjct: 377 D------------------------LEFLGLITFEDPLRPDAKETIEELKAAGIKVVMIT 412
Query: 663 GDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARS 722
GDN+ TA++IA + GI V AR
Sbjct: 413 GDNVLTAKAIAKELGID--------------------------------------VFARV 434
Query: 723 SPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDI 782
SP K +V+ + +VA+TGDG ND PALKKADVG AMG AK A+DI
Sbjct: 435 SPEQKLQIVEALQKKG-----HIVAMTGDGVNDAPALKKADVGIAMG------AKAAADI 483
Query: 783 ILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQML 842
+L DD+ S+IVKAV GR ++ +I + + + N++ + +A +
Sbjct: 484 VLLDDDLSAIVKAVKEGRKIFSNIKSNIFWAIAYNLILIPLALLLIV------------- 530
Query: 843 WVNLIMDTLASLAL 856
+ L++ LA+LAL
Sbjct: 531 -IILLLPMLAALAL 543
>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating
P-type ATPase. This model describes the P-type ATPase
responsible for translocating calcium ions across the
golgi membrane of fungi and animals , and is of
particular importance in the sarcoplasmic reticulum of
skeletal and cardiac muscle in vertebrates. The calcium
P-type ATPases have been characterized as Type IIA based
on a phylogenetic analysis which distinguishes this
group from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the former of which is
modelled by TIGR01116.
Length = 884
Score = 402 bits (1035), Expect = e-124
Identities = 276/968 (28%), Positives = 446/968 (46%), Gaps = 164/968 (16%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
V E C KL T GL SQ + HRR G N + ++ + LI+L
Sbjct: 9 VEETCSKLQTDLQNGLNSSQ-EASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLL 67
Query: 99 IA-ALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRG 157
IA A++S+ + D + +I +++++VV V +Y EK
Sbjct: 68 IASAVISVFMG--------NID---------DAVSITLAILIVVTVGFVQEYRSEKSLEA 110
Query: 158 LQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSL 217
L + + +IR+ +L+ + +V GD+ + GD +PAD ++++ DL IDES+L
Sbjct: 111 LNKLVP--PECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNL 168
Query: 218 TGESDHVKK------GELFDPM------VLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLL 265
TGE+ V K + GT V G GK +V G N++ G +F ++
Sbjct: 169 TGETTPVSKVTAPIPAATNGDLAERSNIAFMGTLVRCGHGKGIVVGTGSNTEFGAVFKMM 228
Query: 266 GATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGY 325
A + KP K+ LQ + L Q+
Sbjct: 229 QAIE---------------------------KP----------KTPLQKSMDLLGKQLSL 251
Query: 326 AGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAV 385
+ ++ V+ L+ + ++W + F + V++ V A+PEGLP+ V
Sbjct: 252 V--SFGVIGVICLVG-------WFQGKDW--------LEMFTISVSLAVAAIPEGLPIIV 294
Query: 386 TLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYK- 444
T++LA V +M K +VR L + ET+G+ ICSDKTGTLT N MT + + + +
Sbjct: 295 TVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKIWTSDGLHTM 354
Query: 445 -NIPKYEDIPEDIASKIVEGISVNSGYTSKIMAP---ENA---NELPKQVGNKTECALLG 497
N E I V + + A NA NE +GN T+ AL+
Sbjct: 355 LNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNAKFRNEADTLLGNPTDVALIE 414
Query: 498 FVVAIGKNYQTVRDDLPEEVFTRV--YTFNSVRKSMSTVI--PKKNGYRVYTKGASEIIL 553
++ G D E + RV F+S RK M+ + + KGA E +L
Sbjct: 415 LLMKFGL-------DDLRETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVL 467
Query: 554 KKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIE 613
K C+Y ++G T+ + + E MA GLR I+ A
Sbjct: 468 KYCTYYQKKDGKTLTLTQQQRDVIQEEAAE-MASAGLRVIAFASG--------------- 511
Query: 614 GDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIA 673
P LT L ++GI DP RP V EA+ G+ I M+TGD+ TA SIA
Sbjct: 512 --PEKGQ-------LTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIA 562
Query: 674 TKCGI-VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVK 732
+ G+ K + + G++ + + L ++ P++ V AR+SP K +VK
Sbjct: 563 RRLGMPSKTSQS---VSGEKLD--------AMDDQQLSQIVPKVAVFARASPEHKMKIVK 611
Query: 733 GMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
+ +VVA+TGDG ND PALK AD+G AMG TGTDVAKEA+D+ILTDD+F++I
Sbjct: 612 AL-----QKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDVAKEAADMILTDDDFATI 666
Query: 793 VKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLA 852
+ A+ G+ ++++I F+ FQL+ +V A+ + + +PL A+Q+LW+N++MD
Sbjct: 667 LSAIEEGKGIFNNIKNFITFQLSTSVAALSLIALATLMGFPNPLNAMQILWINILMDGPP 726
Query: 853 SLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILF-FGDKLLDIP 911
+ +L E D++ + P R +++K ++K I+ AI +I+ G LF F ++ D
Sbjct: 727 AQSLGVEPVDKDVMRKPPRPRNDKILTKDLIKKILVSAI---IIVVGTLFVFVREMQD-- 781
Query: 912 TGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQRNVFE-GLFTNPIFYSIWVIT 970
G + + T+ F FV +FN + R ++VFE G F+N +F +
Sbjct: 782 -------GVITARDTTMTFTCFVFFDMFNALACR--SQTKSVFEIGFFSNRMFNYAVGGS 832
Query: 971 MVSQVIIV 978
++ Q++++
Sbjct: 833 IIGQLLVI 840
>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum
calcium-translocating P-type ATPase. This model
describes the P-type ATPase responsible for
translocating calcium ions across the endoplasmic
reticulum membrane of eukaryotes , and is of particular
importance in the sarcoplasmic reticulum of skeletal and
cardiac muscle in vertebrates. These pumps transfer Ca2+
from the cytoplasm to the lumen of the endoplasmic
reticulum. In humans and mice, at least, there are
multiple isoforms of the SERCA pump with overlapping but
not redundant functions. Defects in SERCA isoforms are
associated with diseases in humans. The calcium P-type
ATPases have been characterized as Type IIA based on a
phylogenetic analysis which distinguishes this group
from the Type IIB PMCA calcium pump modelled by
TIGR01517. A separate analysis divides Type IIA into
sub-types, SERCA and PMR1 the latter of which is
modelled by TIGR01522 [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 917
Score = 397 bits (1022), Expect = e-122
Identities = 288/977 (29%), Positives = 443/977 (45%), Gaps = 148/977 (15%)
Query: 85 VWEALQDVTLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVT 144
V E +D+ + IL +AA VS L+++ G EET ++E IL+ ++ +V
Sbjct: 1 VLEQFEDLLVRILLLAACVSFVLAWFEEG-------EETVTAFVEPFVILLILVANAIVG 53
Query: 145 AFNDYSKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGIL 204
+ + + EK L+ + E EH V+R I D+V GDI ++ GD +PAD +
Sbjct: 54 VWQERNAEKAIEALK-EYESEHA-KVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRV 111
Query: 205 IQSNDLKIDESSLTGESDHVKKGELFDP-----------MVLSGTHVMEGSGKMVVTAVG 253
+ L++D+S LTGES V K P M+ SGT V+ G + VV G
Sbjct: 112 LSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNMLFSGTLVVAGKARGVVVRTG 171
Query: 254 VNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQ 313
++++ G I + A + E +KK DE
Sbjct: 172 MSTEIGKIRDEMRAAEQE------DTPLQKKLDE------------------------FG 201
Query: 314 AKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVL 373
L+K+ IG I IL VI I + D + + + +F + V +
Sbjct: 202 ELLSKV---IGL----ICILVWVINIGHF-------NDPALGGGWIQGAIYYFKIAVALA 247
Query: 374 VVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT- 432
V A+PEGLP +T LA +KM K N +VR L + ET+G T ICSDKTGTLTTN+M+
Sbjct: 248 VAAIPEGLPAVITTCLALGTRKMAKKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSV 307
Query: 433 ----AVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYT------SKIMAPENANE 482
A+ + + PE I + V G + I A N +
Sbjct: 308 CKVVALDPSSSSLNEFCVTGTTYAPEG--GVIKDDGPVAGGQDAGLEELATIAALCNDSS 365
Query: 483 LP--------KQVGNKTECALLGFVVAIGKNYQTVRDDLP------------EEVFTRVY 522
L ++VG TE AL V +G T + F ++
Sbjct: 366 LDFNERKGVYEKVGEATEAALKVLVEKMG-LPATKNGVSSKRRPALGCNSVWNDKFKKLA 424
Query: 523 T--FNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRN 580
T F+ RKSMS + G +++ KGA E +L++C++I +G T M+ ++
Sbjct: 425 TLEFSRDRKSMSVLCKPSTGNKLFVKGAPEGVLERCTHILNGDGRAVPLTDKMKNTILSV 484
Query: 581 VIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPV 640
+ E LR +++A+KD + E DP + I S LT + V+G+ DP
Sbjct: 485 IKEMGTTKALRCLALAFKDIPDPREEDLLS----DPA--NFEAIESDLTFIGVVGMLDPP 538
Query: 641 RPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI--LEGKEFNRRVR 698
RPEV +AI+KC+ AGI + M+TGDN TA +I + GI P ED G+EF
Sbjct: 539 RPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREF----- 593
Query: 699 DNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPA 758
D G +Q + +R PS K LV+ + E+VA+TGDG ND PA
Sbjct: 594 DEMGPAKQR---AACRSAVLFSRVEPSHKSELVE-----LLQEQGEIVAMTGDGVNDAPA 645
Query: 759 LKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNV 818
LKKAD+G AMG +GT+VAKEASD++L DDNF++IV AV GR +Y+++ +F+++ ++ N+
Sbjct: 646 LKKADIGIAMG-SGTEVAKEASDMVLADDNFATIVAAVEEGRAIYNNMKQFIRYMISSNI 704
Query: 819 VAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALI 878
V+ F+ A L VQ+LWVNL+ D L + AL P D++ + P + LI
Sbjct: 705 GEVVCIFLTAALGIPEGLIPVQLLWVNLVTDGLPATALGFNPPDKDIMWKPPRRPDEPLI 764
Query: 879 SKTMMKNIIGQAIY-QLVIIFGILFF----------GDKLLDIPTGRG--AEYGSLPTQH 925
+ + + +Y L + G +++ D P
Sbjct: 765 TGWLFFRYLVVGVYVGLATVGGFVWWYLLTHFTGCDEDSFTTCPDFEDPDCYVFEGKQPA 824
Query: 926 FTIIFNTFVLMTLFNEINARKIHGQRNVFEGLFTNPIFYSIWVI-----TMVSQVIIVQY 980
TI + V++ +FN +NA L P + + W+I +M +I+
Sbjct: 825 RTISLSVLVVIEMFNALNALSEDQS------LLRMPPWVNKWLIGAICLSMALHFLILYV 878
Query: 981 GGIA--FATHSLTLEQW 995
++ F L+L W
Sbjct: 879 PFLSRIFGVTPLSLTDW 895
>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium
uptake antiporter, P-type ATPase, alpha subunit. This
model describes the P-type ATPases responsible for the
exchange of either protons or sodium ions for potassium
ions across the plasma membranes of eukaryotes. Unlike
most other P-type ATPases, members of this subfamily
require a beta subunit for activity. This model
encompasses eukaryotes and consists of two functional
types, a Na/K antiporter found widely distributed in
eukaryotes and a H/K antiporter found only in
vertebrates. The Na+ or H+/K+ antiporter P-type ATPases
have been characterized as Type IIC based on a published
phylogenetic analysis. Sequences from Blastocladiella
emersonii (GP|6636502, GP|6636502 and PIR|T43025), C.
elegans (GP|2315419, GP|6671808 and PIR|T31763) and
Drosophila melanogaster (GP|7291424) score below trusted
cutoff, apparently due to long branch length (excessive
divergence from the last common ancestor) as evidenced
by a phylogenetic tree. Experimental evidence is needed
to determine whether these sequences represent ATPases
with conserved function. Aside from fragments, other
sequences between trusted and noise appear to be
bacterial ATPases of unclear lineage, but most likely
calcium pumps [Energy metabolism, ATP-proton motive
force interconversion].
Length = 997
Score = 280 bits (718), Expect = 4e-79
Identities = 246/881 (27%), Positives = 405/881 (45%), Gaps = 141/881 (16%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSN-IIPPKPSKTFLQLVWEALQDVTLIIL 97
+ E+ +K T ++GL ++ R+ G N + PP + +++ + + ++L
Sbjct: 22 LDELERKYGTDLSKGLSAARAAEILARD--GPNALTPPPTTPEWVKFCRQLFGGFS-MLL 78
Query: 98 EIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKE----K 153
I A++ L++ E + Y + V + VV++T Y +E K
Sbjct: 79 WIGAILCF-LAYGIQASTEEEPQNDNLY-------LGVVLSAVVIITGCFSYYQEAKSSK 130
Query: 154 QFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKID 213
+N + + VIR E I +VVGD+ ++K GD +PAD +I + K+D
Sbjct: 131 IMESFKNMVPQQA--LVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVD 188
Query: 214 ESSLTGESDHVKKGELF---DPM-----VLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLL 265
SSLTGES+ + F +P+ T+ +EG+ + +V G + G I +L
Sbjct: 189 NSSLTGESEPQTRSPEFTHENPLETRNIAFFSTNCVEGTARGIVVNTGDRTVMGRIASL- 247
Query: 266 GATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGY 325
S L+ T +AI+I +
Sbjct: 248 -------------------------------------------ASGLENGKTPIAIEIEH 264
Query: 326 AGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAV 385
I + V + +S + + ++ +A+ F++G+ +V VPEGL V
Sbjct: 265 FIHIITGVAVFLGVS-FFILSLILGYTWLEAV-------IFLIGI--IVANVPEGLLATV 314
Query: 386 TLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKN 445
T+ L + K+M + N LV++L+A ET+G+ + ICSDKTGTLT NRMT V + + N
Sbjct: 315 TVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMT-----VAHMWFDN 369
Query: 446 IPKYEDIPEDIASKIVEGISVNSGYTSKIMA----------PENANELPKQV-GNKTECA 494
D ED + + S S+I EN L + V G+ +E A
Sbjct: 370 QIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASESA 429
Query: 495 LLGFVVAIGKNYQTVRDDLPE--EVFTRVYTFNSVRKSMSTV----IPKKNGYRVYTKGA 548
LL + + +R+ P+ E+ FNS K ++ P+ + + KGA
Sbjct: 430 LLKCIELCLGSVMEMRERNPKVVEI-----PFNSTNKYQLSIHENEDPRDPRHLLVMKGA 484
Query: 549 SEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEIN 608
E IL++CS I +G + ++++ +N + G R + + ++
Sbjct: 485 PERILERCSSIL-IHGKEQPLDEELK-EAFQNAYLELGGLGERVLGFCHLYLPDEQ---- 538
Query: 609 QVHIEGDPNWDDESNI-VSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNIN 667
EG D+ N +L + +I + DP R VP+A+ KC+ AGI + MVTGD+
Sbjct: 539 --FPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPI 596
Query: 668 TARSIATKCGIVKPG----EDY---LILEGKEFNRR-----------VRDNNGEVQQNLL 709
TA++IA GI+ G ED L + + N R ++D E +L
Sbjct: 597 TAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDEIL 656
Query: 710 DKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
K + V AR+SP K +V+G + A +VAVTGDG ND PALKKAD+G AMG
Sbjct: 657 -KYHTEI-VFARTSPQQKLIIVEGC--QRQGA---IVAVTGDGVNDSPALKKADIGVAMG 709
Query: 770 ITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGAC 829
I G+DV+K+A+D+IL DDNF+SIV V GR ++D++ K + + LT N+ + I
Sbjct: 710 IAGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLIFII 769
Query: 830 AVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 870
A PL + +L ++L D + +++LA E D++ R+P
Sbjct: 770 ANIPLPLGTITILCIDLGTDMVPAISLAYEKAESDIMKRQP 810
>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type
ATPase, fungal-type. Initially described as a calcium
efflux ATPase , more recent work has shown that the S.
pombe CTA3 gene is in fact a potassium ion efflux pump.
This model describes the clade of fungal P-type ATPases
responsible for potassium and sodium efflux. The degree
to which these pumps show preference for sodium or
potassium varies. This group of ATPases has been
classified by phylogentic analysis as type IID. The
Leishmania sequence (GP|3192903), which falls between
trusted and noise in this model, may very well turn out
to be an active potassium pump.
Length = 1053
Score = 231 bits (589), Expect = 3e-62
Identities = 130/391 (33%), Positives = 199/391 (50%), Gaps = 39/391 (9%)
Query: 518 FTRVYTFNSVRKSMSTVIPKKNG--YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQG 575
F + F+S K M+++ +G Y +Y KGA E I++ CS G++G +D
Sbjct: 527 FIAEFPFDSEIKRMASIYEDNHGETYNIYAKGAFERIIECCSSSNGKDGVKISPLEDCDR 586
Query: 576 RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIG 635
L+ +E +A +GLR ++ A K F +Q+ E ES++ L +IG
Sbjct: 587 ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEF----LGLIG 642
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPG--------EDYLI 687
I DP R E A++KC +AGI + M+TGD TA++IA + GI+ P D ++
Sbjct: 643 IYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMV 702
Query: 688 LEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVA 747
+ G +F+ + +D + V+AR +P K +++ + K A
Sbjct: 703 MTGSQFD--------ALSDEEVDDLKALCLVIARCAPQTKVKMIEALHRRK-----AFCA 749
Query: 748 VTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSIS 807
+TGDG ND P+LK A+VG AMGI G+DVAK+ASDI+L+DDNF+SI+ A+ GR ++D+I
Sbjct: 750 MTGDGVNDSPSLKMANVGIAMGINGSDVAKDASDIVLSDDNFASILNAIEEGRRMFDNIM 809
Query: 808 KFLQFQLTVNVVAVIVAFIGACAVQDS------PLKAVQMLWVNLIMDTLASLALATEMP 861
KF+ L NV I+ IG A +D PL V++LW +I ++ L E
Sbjct: 810 KFVLHLLAENVAEAILLIIG-LAFRDENGKSVFPLSPVEILWCIMITSCFPAMGLGLEKA 868
Query: 862 TPDLLLRKPYGR-----TKALISKTMMKNII 887
PDL+ R P+ K LI
Sbjct: 869 APDLMDRLPHDNEVGIFQKELIIDMFAYGFF 899
Score = 134 bits (339), Expect = 6e-32
Identities = 122/439 (27%), Positives = 193/439 (43%), Gaps = 58/439 (13%)
Query: 46 LYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSL 105
+ TS EGL + + +HR + G N + ++ + + ++L IAA +S
Sbjct: 19 IGTSIPEGL--THDEAQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISF 76
Query: 106 GLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGE 165
+ HD WIEG I + + +L+ +Y EK L+N
Sbjct: 77 AM----------HD-------WIEGGVISAIIALNILIGFIQEYKAEKTMDSLKNL--AS 117
Query: 166 HKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVK 225
VIR + I D+V GDIC +K GD +PAD LI++ + DE+ LTGES V
Sbjct: 118 PMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVI 177
Query: 226 K--------------GELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDE 271
K G+ + + S + V +G K + A +NS+ G I L D
Sbjct: 178 KDAHATFGKEEDTPIGDRIN-LAFSSSAVTKGRAKGICIATALNSEIGAIAAGL-QGDGG 235
Query: 272 EVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIA 331
++ +KD K+R I + K A + L KL+KLA+ + IA
Sbjct: 236 LFQRPEKDDPNKRRKLNKWILKVTKKVTG-AFLGLNVGTPLHRKLSKLAVILFC----IA 290
Query: 332 ILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAY 391
I+ +I+++ + KF ++ E AIY + + + +PE L +++++A
Sbjct: 291 IIFAIIVMAAH---KFDVDKE--VAIY----------AICLAISIIPESLIAVLSITMAM 335
Query: 392 SVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYED 451
M K N +VR LDA E +G ICSDKTGT+T +M A Q ++ +I +D
Sbjct: 336 GAANMSKRNVIVRKLDALEALGAVNDICSDKTGTITQGKMIARQIWIPRFGTISIDNSDD 395
Query: 452 IPEDIASKIVEGISVNSGY 470
+ V GI S Y
Sbjct: 396 -AFNPNEGNVSGIPRFSPY 413
>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type
ATPase. This model describes the plasma membrane proton
efflux P-type ATPase found in plants, fungi, protozoa,
slime molds and archaea. The best studied representative
is from yeast.
Length = 754
Score = 224 bits (573), Expect = 2e-61
Identities = 178/795 (22%), Positives = 319/795 (40%), Gaps = 195/795 (24%)
Query: 55 GGSQTDLEHRREVFGSNIIPPK---PSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111
G + + + R +G N +P K P FL W L ++E AA++++ L
Sbjct: 1 GLTSAEAKKRLAKYGPNELPEKKVSPLLKFLGFFWNPLS----WVMEAAAIIAIALE--- 53
Query: 112 PGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVI 171
W++ IL +++ + + L+ + + + V+
Sbjct: 54 --------------NWVDFVIILGLLLLNATIGFIEENKAGNAVEALKQSLAPKAR--VL 97
Query: 172 RQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFD 231
R + ++I ++V GD+ ++K GD++PAD L + + +++D+++LTGES V K
Sbjct: 98 RDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKK--TG 155
Query: 232 PMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAI 291
+ SG+ V +G + VVTA G+N+ G L+ +T+
Sbjct: 156 DIAYSGSTVKQGEAEAVVTATGMNTFFGKAAALVQSTETG-------------------- 195
Query: 292 EAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIG-YAGSTIAILTVVILISQYCVKKFVIE 350
L K+ +IG + I +L ++ L+ F
Sbjct: 196 ---------------------SGHLQKILSKIGLFLIVLIGVLVLIELVVL-----FFGR 229
Query: 351 DEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACE 410
E FRE ++F +V +LV +P +P +++++A ++ K +V L A E
Sbjct: 230 GE-----SFREGLQFALV---LLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIE 281
Query: 411 TMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGY 470
+ +CSDKTGTLT N+++ + +D+ + +
Sbjct: 282 ELAGMDILCSDKTGTLTLNKLS--------IDEILPFFNGFDKDDVL--------LYAAL 325
Query: 471 TSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRK- 529
S+ E+ + + V K+ + RD F F+ V K
Sbjct: 326 ASRE---EDQDAIDTAVLGSA------------KDLKEARDGYKVLEFV---PFDPVDKR 367
Query: 530 SMSTVIPKKNG--YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMAC 587
+ +TV + G ++V TKGA ++IL C K V ++ +A
Sbjct: 368 TEATVEDPETGKRFKV-TKGAPQVILDLC------------DNKKEIEEKVEEKVDELAS 414
Query: 588 DGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEA 647
G R + +A D E + H G ++ + DP R + E
Sbjct: 415 RGYRALGVARTD------EEGRWHFLG------------------LLPLFDPPRHDTKET 450
Query: 648 IKKCQRAGITIRMVTGDNINTARSIATKCGI-----------VKPGEDYLILEGKEFNRR 696
I++ + G+ ++MVTGD++ A+ A + G+ D L E
Sbjct: 451 IERARHLGVEVKMVTGDHLAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGLGEM--- 507
Query: 697 VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 756
V D +G + V+P KY +V+ + +V +TGDG ND
Sbjct: 508 VEDADGFAE------VFPE----------HKYEIVEILQKRG-----HLVGMTGDGVNDA 546
Query: 757 PALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV 816
PALKKADVG A+ TD A+ A+DI+LT+ S IV A++ R ++ + ++ +++
Sbjct: 547 PALKKADVGIAVA-GATDAARSAADIVLTEPGLSVIVDAILESRKIFQRMKSYVIYRIAE 605
Query: 817 NVVAVIVAFIGACAV 831
+ IV F G +
Sbjct: 606 TI--RIVFFFGLLIL 618
>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase.
Length = 222
Score = 181 bits (463), Expect = 5e-52
Identities = 83/280 (29%), Positives = 126/280 (45%), Gaps = 58/280 (20%)
Query: 132 AILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQ 191
IL+ V++ L+ A+ +Y K + L+ + VIR + ++I ++VVGDI
Sbjct: 1 IILLLVLINALLEAYQEYRARKALKALKKLLP-PTAATVIRDGKEEEIPADELVVGDIVL 59
Query: 192 IKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDPMVLSGTHVMEGSGKMVVTA 251
+K GD +PADG +I L++DES+LTGES V+K V +GT V+ G K++VTA
Sbjct: 60 LKPGDRVPADGRII-EGSLEVDESALTGESLPVEKSR--GDTVFAGTVVLSGELKVIVTA 116
Query: 252 VGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSV 311
G +++ G I L+ E+ K+
Sbjct: 117 TGEDTELGKIARLV-------------------------------------EEAKSAKTP 139
Query: 312 LQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVT 371
LQ L KLA + +AIL +I +F+ + +
Sbjct: 140 LQRLLDKLAKILVPIVLALAILVFLIWF-----------------FRGGDFLEALLRALA 182
Query: 372 VLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACET 411
VLV A PE LPLAV L+LA ++ K LV++L A ET
Sbjct: 183 VLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSALET 222
>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase.
This model describes the magnesium translocating P-type
ATPase found in a limited number of bacterial species
and best described in Salmonella typhimurium, which
contains two isoforms. These transporters are active in
low external Mg2+ concentrations and pump the ion into
the cytoplasm. The magnesium ATPases have been
classified as type IIIB by a phylogenetic analysis
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 867
Score = 197 bits (502), Expect = 6e-52
Identities = 189/837 (22%), Positives = 335/837 (40%), Gaps = 167/837 (19%)
Query: 41 EICKKLYTSPNEGL---------GGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQD 91
K E L G + ++ R FG N + L+L+ A +
Sbjct: 10 NNLLKESQMGKETLLRKLGVHETGLTNVEVTERLAEFGPNQTVEEKKVPNLRLLIRAFNN 69
Query: 92 VTLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAF-NDYS 150
+ IL + VS + +E I+ +++ + F +
Sbjct: 70 PFIYILAMLMGVSYLT------------------DDLEATVIIALMVLASGLLGFIQESR 111
Query: 151 KEKQFRGLQNQIEGEHKFAVIR------QNELKQIFVGDIVVGDICQIKYGDLLPADGIL 204
E+ L+N ++ + V+R + ++ + +V GD+ ++ GD++PAD +
Sbjct: 112 AERAAYALKNMVK--NTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARV 169
Query: 205 IQSNDLKIDESSLTGESDHVKK---------GELFD--PMVLSGTHVMEGSGKMVVTAVG 253
I + DL I++S+LTGES V+K E+ + + GT+V+ G + VV A G
Sbjct: 170 ISARDLFINQSALTGESLPVEKFVEDKRARDPEILERENLCFMGTNVLSGHAQAVVLATG 229
Query: 254 VNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQ 313
+ F L E Q DK K
Sbjct: 230 ----SSTWFGSLAIAATERRGQTAFDKGVKS----------------------------- 256
Query: 314 AKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVL 373
++KL I+ + ++ VV++I+ ++ + +A F+ + V
Sbjct: 257 --VSKLLIRF-----MLVMVPVVLMINGL------MKGDWLEA---------FLFALAVA 294
Query: 374 VVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTA 433
V PE LP+ V+ +LA M K +V+ L A + G +C+DKTGTLT +++
Sbjct: 295 VGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIE- 353
Query: 434 VQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGNKTEC 493
+ K+ D + + ++++ +NS + + N L V K +
Sbjct: 354 ------------LEKHIDSSGETSERVLKMAWLNSYFQTGW-----KNVLDHAVLAKLD- 395
Query: 494 ALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIP-KKNGYRVYTKGASEII 552
+ D++P F+ R+ +S V+ + R+ KGA E +
Sbjct: 396 ---ESAARQTASRWKKVDEIP---------FDFDRRRLSVVVENRAEVTRLICKGAVEEM 443
Query: 553 LKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHI 612
L C++ G + ++ + ++++ M G+R I++A K T K
Sbjct: 444 LTVCTHKR-FGGAVVTLSESEK-SELQDMTAEMNRQGIRVIAVATK---TLKVG------ 492
Query: 613 EGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSI 672
E D DE L +G DP + EAI + GI ++++TGDN I
Sbjct: 493 EADFTKTDEEQ----LIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDNEIVTARI 548
Query: 673 ATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVK 732
+ GI D+L+ E E+ L + + + AR +P + K
Sbjct: 549 CQEVGI--DANDFLLGADIE----------ELSDEELARELRKYHIFARLTP-----MQK 591
Query: 733 GMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
I + V GDG ND PAL+KADVG ++ T D+AKEASDIIL + + +
Sbjct: 592 SRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVD-TAADIAKEASDIILLEKSLMVL 650
Query: 793 VKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMD 849
+ V+ GRN + +I K+L+ + N V + + + P+ ++ +L NL+ D
Sbjct: 651 EEGVIEGRNTFGNILKYLKMTASSNFGNVFSVLVASAFIPFLPMLSLHLLIQNLLYD 707
>gnl|CDD|216063 pfam00689, Cation_ATPase_C, Cation transporting ATPase, C-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport. This family represents 5
transmembrane helices.
Length = 175
Score = 168 bits (427), Expect = 6e-48
Identities = 55/181 (30%), Positives = 90/181 (49%), Gaps = 12/181 (6%)
Query: 834 SPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQ 893
PL +Q+LW+NL+ D L +LAL E P PDL+ R P + L S+ +++ I+ Q +
Sbjct: 2 LPLTPIQILWINLVTDGLPALALGFEPPEPDLMKRPPRKPKEPLFSRKLLRRILLQGLLI 61
Query: 894 LVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQRNV 953
++ + F G I S T+ FNT VL LFN +NAR +
Sbjct: 62 AIVTLLVFFLGLLGFGI---------SESGLAQTMAFNTLVLSQLFNALNARSLRRSLFK 112
Query: 954 FEGLFTNPIFYSIWVITMVSQVIIVQYGGIA--FATHSLTLEQWGWCLFFGVGTLVWQQI 1011
GLF+N + +++++ Q++I+ G+ F T L+LEQW L + L+ ++
Sbjct: 113 I-GLFSNKLLLLAVLLSLLLQLLIIYVPGLQAVFGTTPLSLEQWLIVLGLALVVLLVVEL 171
Query: 1012 V 1012
Sbjct: 172 R 172
>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA;
Provisional.
Length = 902
Score = 139 bits (352), Expect = 2e-33
Identities = 119/470 (25%), Positives = 201/470 (42%), Gaps = 93/470 (19%)
Query: 373 LVVAV---PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 429
L VAV PE LP+ VT +LA K+ K +V+ LDA + G +C+DKTGTLT +
Sbjct: 326 LSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQD 385
Query: 430 RM-----TAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELP 484
++ T + E +++ +NS Y + + N L
Sbjct: 386 KIVLENHTDISGKTSE------------------RVLHSAWLNSHYQTGL-----KNLLD 422
Query: 485 KQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKN-GYRV 543
V E ++ +Q + D++P F+ R+ MS V+ + +++
Sbjct: 423 TAV---LEGVDEESARSLASRWQKI-DEIP---------FDFERRRMSVVVAENTEHHQL 469
Query: 544 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 603
KGA E IL CS + NG + M R ++ V + + GLR +++A K
Sbjct: 470 ICKGALEEILNVCSQVR-HNGEIVPLDDIMLRR-IKRVTDTLNRQGLRVVAVATKYLPAR 527
Query: 604 KAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTG 663
+ + + DES+ L I DP + A+K + +G+T++++TG
Sbjct: 528 EGDYQRA---------DESD----LILEGYIAFLDPPKETTAPALKALKASGVTVKILTG 574
Query: 664 DNINTARSIATKCGI----VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVL 719
D+ A + + G+ V G D L E +
Sbjct: 575 DSELVAAKVCHEVGLDAGEVLIGSDIETLSDDELANLAERTT----------------LF 618
Query: 720 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 779
AR +P K +V + VV GDG ND PAL+ AD+G ++ D+A+EA
Sbjct: 619 ARLTPMHKERIVT-----LLKREGHVVGFMGDGINDAPALRAADIGISVD-GAVDIAREA 672
Query: 780 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV-----NVVAVIVA 824
+DIIL + + + + V+ GR + ++ K++ ++T NV +V+VA
Sbjct: 673 ADIILLEKSLMVLEEGVIEGRRTFANMLKYI--KMTASSNFGNVFSVLVA 720
Score = 56.2 bits (136), Expect = 9e-08
Identities = 64/253 (25%), Positives = 113/253 (44%), Gaps = 45/253 (17%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIP-PKPSKTFLQLVWEALQDVTLIIL 97
E+ K T P EGL ++ + RE G N +P KP ++ L W ++ I+L
Sbjct: 54 EEELWKTFDTHP-EGLNEAEVES--AREQHGENELPAQKPLPWWVHL-WVCYRNPFNILL 109
Query: 98 EIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRG 157
I +S E+ AA +++++V + T N + +E +
Sbjct: 110 TILGAISYA-------------TEDLF------AAGVIALMVA-ISTLLN-FIQEARSTK 148
Query: 158 LQNQIEG--EHKFAVIRQNELK------QIFVGDIVVGDICQIKYGDLLPADGILIQSND 209
+ ++ + V+R K +I + +V GDI ++ GD++PAD ++Q+ D
Sbjct: 149 AADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARD 208
Query: 210 LKIDESSLTGESDHVKK----GELF-------DPMVLSGTHVMEGSGKMVVTAVGVNSQA 258
L + ++SLTGES V+K + D + GT+V+ G+ + VV A G N+
Sbjct: 209 LFVAQASLTGESLPVEKFATTRQPEHSNPLECDTLCFMGTNVVSGTAQAVVIATGANTWF 268
Query: 259 GIIFTLLGATDDE 271
G + + D E
Sbjct: 269 GQLAGRVSEQDSE 281
>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and
metabolism].
Length = 713
Score = 135 bits (341), Expect = 2e-32
Identities = 64/197 (32%), Positives = 92/197 (46%), Gaps = 43/197 (21%)
Query: 631 LCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEG 690
+ VI + D +RP+ EAI + GI + M+TGDN TA +IA + GI
Sbjct: 529 VGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGI------------ 576
Query: 691 KEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTG 750
V A P DK +V+ ++ A VA+ G
Sbjct: 577 -------------------------DEVRAELLPEDKAEIVR-----ELQAEGRKVAMVG 606
Query: 751 DGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFL 810
DG ND PAL ADVG AMG +GTDVA EA+D++L D+ S++ +A+ R I + L
Sbjct: 607 DGINDAPALAAADVGIAMG-SGTDVAIEAADVVLMRDDLSAVPEAIDLSRATRRIIKQNL 665
Query: 811 QFQLTVNVVAVIVAFIG 827
+ N +A+ +A G
Sbjct: 666 FWAFGYNAIAIPLAAGG 682
Score = 100 bits (252), Expect = 1e-21
Identities = 67/347 (19%), Positives = 132/347 (38%), Gaps = 82/347 (23%)
Query: 93 TLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVT---AFNDY 149
TL+ +A + + S Y + + +++ L
Sbjct: 151 TLVA--LATIGAYAYSLY---------------ATLFPVYFEEAAMLIFLFLLGRYLEAR 193
Query: 150 SKEKQFRGLQNQIEGEHKFAVIRQN--ELKQIFVGDIVVGDICQIKYGDLLPADGILIQS 207
+K + R ++ ++ K A + + E +++ V ++ VGDI ++ G+ +P DG+++
Sbjct: 194 AKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSG 253
Query: 208 NDLKIDESSLTGESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGA 267
+ +DES LTGES V+K V +GT ++GS + VT VG
Sbjct: 254 SSS-VDESMLTGESLPVEKKP--GDEVFAGTVNLDGSLTIRVTRVG-------------- 296
Query: 268 TDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQI--GY 325
++ + I ++ VE A+ K A + +LA ++ +
Sbjct: 297 -------------------ADTTLARI-IRLVEEAQ---SSK----APIQRLADRVASYF 329
Query: 326 AGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAV 385
+ I + + W ++ + VLV+A P L LA
Sbjct: 330 VPVVLVIAALTFAL--------------WPLFGGGDWETALYRALAVLVIACPCALGLAT 375
Query: 386 TLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 432
++ + + + L++ +A E + + DKTGTLT +
Sbjct: 376 PTAILVGIGRAARRGILIKGGEALERLAKVDTVVFDKTGTLTEGKPE 422
>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase.
This model encompasses two equivalog models for the
copper and cadmium-type heavy metal transporting P-type
ATPases (TIGR01511 and TIGR01512) as well as those
species which score ambiguously between both models. For
more comments and references, see the files on TIGR01511
and 01512.
Length = 556
Score = 126 bits (319), Expect = 3e-30
Identities = 77/246 (31%), Positives = 108/246 (43%), Gaps = 48/246 (19%)
Query: 587 CDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHL----TCLCVIGIEDPVRP 642
DG + I F+ E + + + V + L VI + D +RP
Sbjct: 328 VDGGEEVRIGNPRFLELAIEPISASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRP 387
Query: 643 EVPEAIKKCQRAG-ITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNN 701
E EAI +RAG I + M+TGDN + A ++A + GI D
Sbjct: 388 EAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI--------------------DE- 426
Query: 702 GEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKK 761
V A P DK +VK ++ VVA+ GDG ND PAL
Sbjct: 427 ----------------VHAELLPEDKLAIVK-----ELQEEGGVVAMVGDGINDAPALAA 465
Query: 762 ADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAV 821
ADVG AMG G+DVA EA+DI+L +D+ SS+ A+ R I + L + L N+VA+
Sbjct: 466 ADVGIAMG-AGSDVAIEAADIVLLNDDLSSLPTAIDLSRKTRRIIKQNLAWALGYNLVAI 524
Query: 822 IVAFIG 827
+A G
Sbjct: 525 PLAAGG 530
Score = 94.6 bits (236), Expect = 6e-20
Identities = 80/368 (21%), Positives = 144/368 (39%), Gaps = 86/368 (23%)
Query: 93 TLIILEIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKE 152
L+ +A + + + +EGA +L + +L + +K
Sbjct: 3 LLMA--LATIAAYAMG-----------------LVLEGALLLF---LFLLGETLEERAKG 40
Query: 153 KQFRGLQNQIEGEHKFAVIRQ--NELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDL 210
+ L + A + Q +++ V ++ VGDI ++ G+ +P DG++I
Sbjct: 41 RASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESE 100
Query: 211 KIDESSLTGESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDD 270
+DES+LTGES V+K E + V +GT +GS + VT +G +S I L
Sbjct: 101 -VDESALTGESMPVEKKEGDE--VFAGTINGDGSLTIRVTKLGEDSTLAQIVEL------ 151
Query: 271 EEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTI 330
V++ + K +R +A++ + + + I
Sbjct: 152 --VEEAQSSKAPIQR---------------LADR-------IASYYVPAVL-------AI 180
Query: 331 AILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLA 390
A+LT V+ ++ A+Y + VLVVA P L LA +++
Sbjct: 181 ALLTFVVWLAL----------GALGALY---------RALAVLVVACPCALGLATPVAIL 221
Query: 391 YSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYE 450
++ + L++ DA E + + DKTGTLTT + T V E E
Sbjct: 222 VAIGVAARRGILIKGGDALEKLAKVKTVVFDKTGTLTTGKPTVVD---IEPLDDASISEE 278
Query: 451 DIPEDIAS 458
++ A+
Sbjct: 279 ELLALAAA 286
>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade but
the substrate of their pumping activity has yet to be
determined. This clade has been designated type V in.
Length = 1054
Score = 120 bits (302), Expect = 2e-27
Identities = 145/688 (21%), Positives = 245/688 (35%), Gaps = 149/688 (21%)
Query: 372 VLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRM 431
++ + VP LP +++ + S+ ++ K G C DKTGTLT + +
Sbjct: 405 IITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGL 464
Query: 432 TAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGNKT 491
+ + + S + ++ T K+ +L VG+
Sbjct: 465 DLRGVQGLSGNQEFLKIVTEDSSLKPSITHKALATCHSLT-KL-----EGKL---VGDPL 515
Query: 492 ECALLGFVVAI-----------GKNYQTVRDDLPEEV-FTRVYTFNSVRKSMSTVIPKKN 539
+ + DD P+E+ R + F+S + MS VI N
Sbjct: 516 DKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQELSIIRRFQFSSALQRMS-VIVSTN 574
Query: 540 GYRV---YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIA 596
R + KGA E I C E D Q V++ +G R +++A
Sbjct: 575 DERSPDAFVKGAPETIQSLC--------SPETVPSDYQ-----EVLKSYTREGYRVLALA 621
Query: 597 YKDFVTDKAEINQV-HIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAG 655
YK+ K + + + D ESN LT L I E+P++P+ E IK+ +RA
Sbjct: 622 YKEL--PKLTLQKAQDLSRD---AVESN----LTFLGFIVFENPLKPDTKEVIKELKRAS 672
Query: 656 ITIRMVTGDNINTARSIATKCGIVKPGEDYLIL---------EGKEFNRRVRD-----NN 701
I M+TGDN TA +A +CGIV P + LIL + + V D +
Sbjct: 673 IRTVMITGDNPLTAVHVARECGIVNP-SNTLILAEAEPPESGKPNQIKFEVIDSIPFAST 731
Query: 702 GEVQ---------------------------------QNLLDKVWPRLRVLARSSPSDKY 728
LL ++ V AR +P K
Sbjct: 732 QVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKE 791
Query: 729 TLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAM-----GITGTDVAKEAS--- 780
TLV+ + V + GDG ND ALK+ADVG ++ + +K AS
Sbjct: 792 TLVELLQKLD-----YTVGMCGDGANDCGALKQADVGISLSEAEASVAAPFTSKLASISC 846
Query: 781 --DIILTDDNFSSIVKAVMWGR-NVYDSISKF---LQFQLTVNVVAVIVAFIGACAVQDS 834
++I GR + S F + L I+ IG S
Sbjct: 847 VPNVIRE-------------GRCALVTSFQMFKYMALYSLIQFYSVSILYLIG------S 887
Query: 835 PLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQL 894
L Q L ++L++ +L ++ P L +P L S ++ +++ Q + +
Sbjct: 888 NLGDGQFLTIDLLLIFPVALLMSRNKPLKKLSKERPPSN---LFSVYILTSVLIQFVLHI 944
Query: 895 VIIFGILFFGDKL----LDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQ 950
+ ++F + P E P T++F ++ F + ++ +
Sbjct: 945 LSQVYLVFELHAQPWYKPENPVDLEKEN--FPNLLNTVLF----FVSSFQYLITAIVNSK 998
Query: 951 RNVF-EGLFTN-PIFYSIWVITMVSQVI 976
F E ++ N P Y + + V+
Sbjct: 999 GPPFREPIYKNKPFVYLLITGLGLLLVL 1026
Score = 54.7 bits (132), Expect = 3e-07
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 24/187 (12%)
Query: 48 TSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGL 107
T G + D+ R+ +G N I P +FL+L+ E + + + ++ L
Sbjct: 132 TCAGHSNGLTTGDIAQRKAKYGKNEIE-IPVPSFLELLKEEVLHPFYVFQVFSVILWLLD 190
Query: 108 SFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHK 167
+Y+ Y + +V + + + Y KQ + L++ +
Sbjct: 191 EYYY-------------Y-----SLCIVFMSSTSISLSV--YQIRKQMQRLRDMVHKPQS 230
Query: 168 FAVIRQNELKQIFVGDIVVGDICQIKY--GDLLPADGILIQSNDLKIDESSLTGESDHVK 225
VIR + I ++V GDI I +P D +L+ ++ES LTGES V
Sbjct: 231 VIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSG-SCIVNESMLTGESVPVL 289
Query: 226 KGELFDP 232
K + D
Sbjct: 290 KFPIPDN 296
>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type
ATPase. This model describes the P-type ATPase
primarily responsible for translocating copper ions
accross biological membranes. These transporters are
found in prokaryotes and eukaryotes. This model
encompasses those species which pump copper ions out of
cells or organelles (efflux pumps such as CopA of
Escherichia coli ) as well as those which pump the ion
into cells or organelles either for the purpose of
supporting life in extremely low-copper environments
(for example CopA of Enterococcus hirae ) or for the
specific delivery of copper to a biological complex for
which it is a necessary component (for example FixI of
Bradyrhizobium japonicum, or CtaA and PacS of
Synechocystis). The substrate specificity of these
transporters may, to a varying degree, include silver
ions (for example, CopA from Archaeoglobus fulgidus).
Copper transporters from this family are well known as
the genes which are mutated in two human disorders of
copper metabolism, Wilson's and Menkes' diseases. The
sequences contributing to the seed of this model are all
experimentally characterized. The copper P-type ATPases
have been characterized as Type IB based on a
phylogenetic analysis which combines the
copper-translocating ATPases with the
cadmium-translocating species. This model and that
describing the cadmium-ATPases (TIGR01512) are well
separated, and thus we further type the copper-ATPases
as IB1 (and the cadmium-ATPases as IB2). Several
sequences which have not been characterized
experimentally fall just below the cutoffs for both of
these models. A sequence from Enterococcus faecalis
scores very high against this model, but yet is
annotated as an "H+/K+ exchanging ATPase". BLAST of this
sequence does not hit anything else annotated in this
way. This error may come from the characterization paper
published in 1987. Accession GP|7415611 from
Saccharomyces cerevisiae appears to be mis-annotated as
a cadmium resistance protein. Accession
OMNI|NTL01HS00542 from Halobacterium which scores above
trusted for this model is annotated as
"molybdenum-binding protein" although no evidence can be
found for this classification [Cellular processes,
Detoxification, Transport and binding proteins, Cations
and iron carrying compounds].
Length = 572
Score = 115 bits (289), Expect = 2e-26
Identities = 61/193 (31%), Positives = 91/193 (47%), Gaps = 43/193 (22%)
Query: 632 CVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 691
V+ + D ++PE E I+ +R GI M+TGDN TA+++A + GI
Sbjct: 407 GVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIEN----------- 455
Query: 692 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 751
V A P DK L+K K+ +VVA+ GD
Sbjct: 456 --------------------------VRAEVLPDDKAALIK-----KLQEKGKVVAMVGD 484
Query: 752 GTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQ 811
G ND PAL +ADVG A+G GTDVA EA+D++L ++ + + A+ R I + L
Sbjct: 485 GINDAPALAQADVGIAIG-AGTDVAIEAADVVLLRNDLNDVATAIDLSRKTLRRIKQNLL 543
Query: 812 FQLTVNVVAVIVA 824
+ NV+A+ +A
Sbjct: 544 WAFGYNVIAIPIA 556
Score = 88.9 bits (221), Expect = 5e-18
Identities = 90/373 (24%), Positives = 151/373 (40%), Gaps = 89/373 (23%)
Query: 79 KTFLQLVWEALQ-----DVTLIILEIAA-----LVSLGLSFYHPGGESEHDNEETKYEWI 128
+ F + W+AL+ TLI L LV+L + G H +
Sbjct: 3 RPFYKSAWKALRHKTPNMDTLIALGTTVAYGYSLVALLANQVLTG-LHVHT-------FF 54
Query: 129 EGAAILVSVIVVVLVTAFND-YSKEKQFRGLQNQIEGEHKFA-VIRQN-ELKQIFVGDIV 185
+ +A+L I +L+ + + +K + L + + A ++ + E++++ V +
Sbjct: 55 DASAML---ITFILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTDDGEIEEVPVELLQ 111
Query: 186 VGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDPMVLSGTHVMEGSG 245
GDI ++ G+ +P DG +I+ ++DES +TGES V K ++ DP V++GT GS
Sbjct: 112 PGDIVRVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPK-KVGDP-VIAGTVNGTGSL 168
Query: 246 KMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKH 305
+ TA G ++ I L+ + +Q K
Sbjct: 169 VVRATATGEDTTLAQIVRLV-----RQAQQSK---------------------------- 195
Query: 306 DEKKSVLQAKLTKLAIQIG----YAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFRE 361
A + +LA ++ IA++T VI W I +
Sbjct: 196 --------APIQRLADKVAGYFVPVVIAIALITFVI----------------W-LILGAD 230
Query: 362 FVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSD 421
FV V VTVL++A P L LA +A + K+ L++ DA E N + D
Sbjct: 231 FVFALEVAVTVLIIACPCALGLATPTVIAVATGLAAKNGVLIKDGDALERAANIDTVVFD 290
Query: 422 KTGTLTTNRMTAV 434
KTGTLT + T
Sbjct: 291 KTGTLTQGKPTVT 303
>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional.
Length = 903
Score = 115 bits (290), Expect = 5e-26
Identities = 135/516 (26%), Positives = 234/516 (45%), Gaps = 96/516 (18%)
Query: 373 LVVAV---PEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN 429
L VAV PE LP+ V+ +LA M + +V+ L+A + G +C+DKTGTLT +
Sbjct: 324 LAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQD 383
Query: 430 RMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGN 489
R+ + E + ++ +D ++++ +NS + S + N
Sbjct: 384 RI------ILE-HHLDVSGRKD------ERVLQLAWLNSFHQSG-------------MKN 417
Query: 490 KTECALLGFVVAIGK-----NYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNG-YRV 543
+ A++ F + Y+ V D+LP F+ VR+ +S V+ G + +
Sbjct: 418 LMDQAVVAFAEGNPEIVKPAGYRKV-DELP---------FDFVRRRLSVVVEDAQGQHLL 467
Query: 544 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 603
KGA E +L +++ R+G + + + + + E DG R + +A ++
Sbjct: 468 ICKGAVEEMLAVATHV--RDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGG 525
Query: 604 KAEINQVHIEGDPNWDDESNIV--SHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMV 661
++ Q DE ++V LT L DP + AI + G+ ++++
Sbjct: 526 ESR-AQYST------ADERDLVIRGFLTFL------DPPKESAAPAIAALRENGVAVKVL 572
Query: 662 TGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLAR 721
TGDN I + G+ +PGE L G E + + L + V A+
Sbjct: 573 TGDNPIVTAKICREVGL-EPGE---PLLGTEI-----EAMDDAA---LAREVEERTVFAK 620
Query: 722 SSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASD 781
+P K ++K + A V GDG ND PAL+ ADVG ++ +G D+AKE++D
Sbjct: 621 LTPLQKSRVLKAL-----QANGHTVGFLGDGINDAPALRDADVGISVD-SGADIAKESAD 674
Query: 782 IILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTV-----NVVAVIV--AFIGACAVQDS 834
IIL + + + + V+ GR + +I K+L +T NV +V+V AFI
Sbjct: 675 IILLEKSLMVLEEGVIKGRETFGNIIKYL--NMTASSNFGNVFSVLVASAFIPF-----L 727
Query: 835 PLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKP 870
P+ A+ +L NL+ D ++ L+L + + LRKP
Sbjct: 728 PMLAIHLLLQNLMYD-ISQLSLPWDKMDKE-FLRKP 761
Score = 60.0 bits (146), Expect = 6e-09
Identities = 58/227 (25%), Positives = 101/227 (44%), Gaps = 37/227 (16%)
Query: 55 GGSQTDLEHRREVFGSN-IIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113
G ++ D R + +G N + KP +QL+ +A + + +L + A +S ++ P
Sbjct: 45 GLTEEDAAERLQRYGPNEVAHEKPPHALVQLL-QAFNNPFIYVLMVLAAISFFTDYWLP- 102
Query: 114 GESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIR- 172
EET + IL V++ L+ + ++ K L+ + V+R
Sbjct: 103 ---LRRGEET--DLTGVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVRTTA--TVLRR 155
Query: 173 -----QNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKK- 226
+ ++I + ++V GDI + GD++PAD LI+S DL I ++ LTGE+ V+K
Sbjct: 156 GHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKY 215
Query: 227 ------------------GELFD--PMVLSGTHVMEGSGKMVVTAVG 253
G L D + GT+V+ G+ VV A G
Sbjct: 216 DTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTATAVVVATG 262
>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase,
flippase. This model describes the P-type ATPase
responsible for transporting phospholipids from one
leaflet of bilayer membranes to the other. These ATPases
are found only in eukaryotes.
Length = 1057
Score = 114 bits (286), Expect = 2e-25
Identities = 176/773 (22%), Positives = 298/773 (38%), Gaps = 163/773 (21%)
Query: 354 WKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNL----------- 402
A F F+ F ++ ++ +P + L V+L L SV+ +++L
Sbjct: 292 AAANGFFSFLTFLILFSSL----IP--ISLYVSLELVKSVQAYFINSDLQMYHEKTDTPA 345
Query: 403 -VRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQY-KNIPKYEDI-------- 452
VR + E +G I SDKTGTLT N M + + V Y + +D
Sbjct: 346 SVRTSNLNEELGQVEYIFSDKTGTLTQNIMEFKKCSIAGVSYGDGFTEIKDGIRERLGSY 405
Query: 453 -----PEDIASKIVEGIS---VNSGYTSKIMAP---------------------ENANEL 483
+ SK + V+ T+K A + E+
Sbjct: 406 VENENSMLVESKGFTFVDPRLVDLLKTNKPNAKRINEFFLALALCHTVVPEFNDDGPEEI 465
Query: 484 PKQVGNKTECAL------LGFVVAIGKNYQTVRDDLPEEVFTRVYT------FNSVRKSM 531
Q + E AL +GFV + +++ + T+ Y FNS RK M
Sbjct: 466 TYQAASPDEAALVKAARDVGFVF-FERTPKSISLLIEMHGETKEYEILNVLEFNSDRKRM 524
Query: 532 STVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGL 590
S ++ +G ++ KGA +I K+ S G N E+ + +E A +GL
Sbjct: 525 SVIVRNPDGRIKLLCKGADTVIFKRLSS--GGNQVNEETKEH---------LENYASEGL 573
Query: 591 RTISIAYKDFVTDKAEI-NQVHIEGDPNWDDES--------NIVSHLTCLCVIGIEDPVR 641
RT+ IAY++ ++ E N+ + E D +I L L IED ++
Sbjct: 574 RTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQ 633
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLIL---------EGKE 692
VPE I+ ++AGI I ++TGD + TA +I C ++ + +++ +
Sbjct: 634 EGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSDSLDATRSVEA 693
Query: 693 FNRRVRDNNGEVQQNLLDK---------------VWPRLR------------VLA-RSSP 724
+ + E NL D + L V+ R SP
Sbjct: 694 AIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSP 753
Query: 725 SDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTD--VAKEASDI 782
S K +V+ ++ K S G+ +A+ GDG ND +++ADVG +GI+G + A ASD
Sbjct: 754 SQKADVVR-LV--KKSTGKTTLAI-GDGANDVSMIQEADVG--VGISGKEGMQAVMASDF 807
Query: 783 ILTDDNFSSIVKAVMW-GRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQ- 840
+ F + K ++ GR Y ISK + + N++ I+ F + S +
Sbjct: 808 AIG--QFRFLTKLLLVHGRWSYKRISKMILYFFYKNLIFAIIQFWYSFYNGFSGQTLYEG 865
Query: 841 --MLWVNLIMDTLASLALAT--EMPTPDLLLRKP--YGRT---KALISKTMMKNIIGQAI 891
M+ N+ L ++L + + L LR P Y + +KT ++ I
Sbjct: 866 WYMVLYNVFFTALPVISLGVFDQDVSASLSLRYPQLYREGQKGQGFSTKTFWGWML-DGI 924
Query: 892 YQLVIIFGILFFGDKLLDI-PTGRGAEYGSLPTQHFT---IIFNTFVLMTLFNEINARKI 947
YQ ++IF F L D +G ++ S+ FT +I N + + + N N I
Sbjct: 925 YQSLVIFFFPMFAYILGDFVSSGSVDDFSSVGVIVFTALVVIVNLKIALEI-NRWN--WI 981
Query: 948 HGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGIAFATHSLTLEQWGWCLF 1000
+ + + + I+VI V I A + + L
Sbjct: 982 SL---ITIWG--SILVWLIFVI--VYSSIFPSPAFYKAAPRVMGTFGFWLVLL 1027
Score = 42.0 bits (99), Expect = 0.002
Identities = 25/101 (24%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 134 LVSVIVVVLVT----AFNDYSKEKQFRGLQNQ----IEGEHKFAVIRQNELKQIFVGDIV 185
+V + V++VT A D + ++ + + N+ +EG +F I D+
Sbjct: 54 IVPLAFVLIVTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQFVEIPWK--------DLR 105
Query: 186 VGDICQIKYGDLLPADGILIQSNDLK----IDESSLTGESD 222
VGDI ++K + +PAD +L+ S++ ++ ++L GE++
Sbjct: 106 VGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETN 146
>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy
metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase.
This model describes the P-type ATPase primarily
responsible for translocating cadmium ions (and other
closely-related divalent heavy metals such as cobalt,
mercury, lead and zinc) across biological membranes.
These transporters are found in prokaryotes and plants.
Experimentally characterized members of the seed
alignment include: SP|P37617 from E. coli, SP|Q10866
from Mycobacterium tuberculosis and SP|Q59998 from
Synechocystis PCC6803. The cadmium P-type ATPases have
been characterized as Type IB based on a phylogenetic
analysis which combines the copper-translocating ATPases
with the cadmium-translocating species. This model and
that describing the copper-ATPases (TIGR01511) are well
separated, and thus we further type the copper-ATPases
as IB1 and the cadmium-ATPases as IB2. Several sequences
which have not been characterized experimentally fall
just below trusted cutoff for both of these models
(SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from
Sulfolobus solfataricus, OMNI|NTL01CJ01098 from
Campylobacter jejuni, OMNI|NTL01HS01687 from
Halobacterium sp., GP|6899169 from Ureaplasma
urealyticum and OMNI|HP1503 from Helicobacter pylori)
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 536
Score = 105 bits (263), Expect = 3e-23
Identities = 57/196 (29%), Positives = 88/196 (44%), Gaps = 43/196 (21%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGIT-IRMVTGDNINTARSIATKCGIVKPGEDYLILEGK 691
I + D RP+ EAI + + GI + M+TGD A +A + GI
Sbjct: 356 YILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI------------- 402
Query: 692 EFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 751
EV LL P DK +VK ++ VA+ GD
Sbjct: 403 ----------DEVHAELL--------------PEDKLEIVK-----ELREKYGPVAMVGD 433
Query: 752 GTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQ 811
G ND PAL ADVG AMG +G+DVA E +D++L +D+ S + +A+ R + + +
Sbjct: 434 GINDAPALAAADVGIAMGASGSDVAIETADVVLLNDDLSRLPQAIRLARRTRRIVKQNVV 493
Query: 812 FQLTVNVVAVIVAFIG 827
L + ++ +++A G
Sbjct: 494 IALGIILLLILLALFG 509
Score = 92.0 bits (229), Expect = 4e-19
Identities = 70/317 (22%), Positives = 127/317 (40%), Gaps = 62/317 (19%)
Query: 126 EWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIRQNE-LKQIFVGDI 184
E++EGA +L+ + + +Y+ + R L+ +E A + + L+++ V ++
Sbjct: 17 EYLEGALLLL---LFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEEL 73
Query: 185 VVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDPMVLSGTHVMEGS 244
VGD+ +K G+ +P DG+++ +DES+LTGES V+K V +G ++G
Sbjct: 74 KVGDVVVVKPGERVPVDGVVLSGTST-VDESALTGESVPVEKAP--GDEVFAGAINLDGV 130
Query: 245 GKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEK 304
+VVT + +S I I V + E+
Sbjct: 131 LTIVVTKLP---------------------------------ADSTIAKI----VNLVEE 153
Query: 305 HDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVR 364
+K+ Q + + A T +L + + I + V + W
Sbjct: 154 AQSRKAKTQRFIDRFA-----RYYTPVVLAIALAI--WLVPGLLKRWPFW---------- 196
Query: 365 FFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTG 424
+ +LVVA P L ++ + ++ + L++ A E + + DKTG
Sbjct: 197 -VYRALVLLVVASPCALVISAPAAYLSAISAAARHGILIKGGAALEALAKIKTVAFDKTG 255
Query: 425 TLTTNRMTAVQAYVCEV 441
TLTT R V EV
Sbjct: 256 TLTTGRPKVVDVVPAEV 272
>gnl|CDD|222006 pfam13246, Hydrolase_like2, Putative hydrolase of sodium-potassium
ATPase alpha subunit. This is a putative hydrolase of
the sodium-potassium ATPase alpha subunit.
Length = 91
Score = 85.0 bits (211), Expect = 7e-20
Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 478 ENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVI-- 535
+ +G+ TE ALL F +G + + +R P FNS RK MSTV
Sbjct: 11 NEEKNGGEIIGDPTESALLVFAEKLGIDVEELRARYPRV---AEIPFNSERKRMSTVHKL 67
Query: 536 PKKNGYRVYTKGASEIILKKCSYI 559
+GYR++ KGA E IL++CS I
Sbjct: 68 EDDDGYRLFVKGAPERILERCSTI 91
>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B
[Inorganic ion transport and metabolism].
Length = 681
Score = 86.9 bits (216), Expect = 2e-17
Identities = 53/168 (31%), Positives = 85/168 (50%), Gaps = 43/168 (25%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
VI ++D V+P + E + ++ GI M+TGDN TA +IA + G+ +D++
Sbjct: 441 VIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV----DDFI------ 490
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
A ++P DK L++ + A +VA+TGDG
Sbjct: 491 ---------------------------AEATPEDKLALIR-----QEQAEGRLVAMTGDG 518
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGR 800
TND PAL +ADVG AM +GT AKEA++++ D N + +++ V G+
Sbjct: 519 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSNPTKLIEVVEIGK 565
Score = 38.8 bits (91), Expect = 0.020
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 12/94 (12%)
Query: 160 NQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTG 219
+ + ++ ELK+ GDIV+ ++ G+++P+DG +I+ +DES++TG
Sbjct: 107 RLLRADGSIEMVPATELKK---GDIVL-----VEAGEIIPSDGEVIEGVA-SVDESAITG 157
Query: 220 ESDHVKK--GELFDPMVLSGTHVMEGSGKMVVTA 251
ES V + G F V GT V+ K+ +TA
Sbjct: 158 ESAPVIRESGGDFSS-VTGGTRVLSDWLKIRITA 190
>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B;
Provisional.
Length = 679
Score = 82.5 bits (205), Expect = 6e-16
Identities = 53/158 (33%), Positives = 78/158 (49%), Gaps = 43/158 (27%)
Query: 631 LCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEG 690
L VI ++D V+P + E + ++ GI M+TGDN TA +IA + G+ +D+L
Sbjct: 437 LGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGV----DDFL---- 488
Query: 691 KEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTG 750
A ++P DK L++ + A +VA+TG
Sbjct: 489 -----------------------------AEATPEDKLALIR-----QEQAEGRLVAMTG 514
Query: 751 DGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
DGTND PAL +ADVG AM +GT AKEA +++ D N
Sbjct: 515 DGTNDAPALAQADVGVAMN-SGTQAAKEAGNMVDLDSN 551
Score = 37.1 bits (87), Expect = 0.059
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 15/65 (23%)
Query: 160 NQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQ---SNDLKIDESS 216
++ + EL++ GDIV+ ++ G+++PADG +I+ S +DES+
Sbjct: 107 RKLREPGAAEEVPATELRK---GDIVL-----VEAGEIIPADGEVIEGVAS----VDESA 154
Query: 217 LTGES 221
+TGES
Sbjct: 155 ITGES 159
>gnl|CDD|201397 pfam00690, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
Members of this families are involved in Na+/K+, H+/K+,
Ca++ and Mg++ transport.
Length = 69
Score = 71.8 bits (177), Expect = 2e-15
Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 36 YGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLI 95
V E+ +L T +GL ++ + E R E +G N +P K K+ ++ +D +I
Sbjct: 3 TLSVEEVLARLGTDLEKGL--TEAEAEERLEKYGPNELPEKKPKSLWKIFLRQFKDPLVI 60
Query: 96 ILEIAALVS 104
IL IAA+VS
Sbjct: 61 ILLIAAIVS 69
>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit. This model
describes the P-type ATPase subunit of the complex
responsible for translocating potassium ions across
biological membranes in microbes. In E. coli and other
species, this complex consists of the proteins KdpA,
KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while
KdpA is the potassium-ion translocating subunit. The
function of KdpC is unclear, although cit has been
suggested to couple the ATPase subunit to the
ion-translocating subunit , while KdpF serves to
stabilize the complex. The potassium P-type ATPases have
been characterized as Type IA based on a phylogenetic
analysis which places this clade closest to the
heavy-metal translocating ATPases (Type IB). Others
place this clade closer to the Na+/K+ antiporter type
(Type IIC) based on physical characteristics. This model
is very clear-cut, with a strong break between trusted
hits and noise. All members of the seed alignment, from
Clostridium, Anabaena and E. coli are in the
characterized table. One sequence above trusted,
OMNI|NTL01TA01282, is apparently mis-annotated in the
primary literature, but properly annotated by TIGR
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 675
Score = 78.8 bits (194), Expect = 9e-15
Identities = 58/196 (29%), Positives = 95/196 (48%), Gaps = 44/196 (22%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
VI ++D V+ + E + ++ GI M+TGDN TA +IA + G+ +D++
Sbjct: 440 VIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGV----DDFI------ 489
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
A ++P DK L++ + A ++VA+TGDG
Sbjct: 490 ---------------------------AEATPEDKIALIR-----QEQAEGKLVAMTGDG 517
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQF 812
TND PAL +ADVG AM +GT AKEA++++ D + + +++ V G+ + + F
Sbjct: 518 TNDAPALAQADVGVAMN-SGTQAAKEAANMVDLDSDPTKLIEVVHIGKQLLITRGALTTF 576
Query: 813 QLTVNVVAVIVAFIGA 828
+ N VA A I A
Sbjct: 577 SIA-NDVAKYFAIIPA 591
Score = 36.4 bits (84), Expect = 0.093
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 171 IRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELF 230
+ ++LK+ GDI ++ GD++P DG +I+ +DES++TGES V K
Sbjct: 119 VPADQLKK--------GDIVLVEAGDVIPCDGEVIEGV-ASVDESAITGESAPVIKESGG 169
Query: 231 D-PMVLSGTHVMEGSGKMVVTA 251
D V GT ++ + TA
Sbjct: 170 DFASVTGGTRILSDWLVVECTA 191
>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase;
Provisional.
Length = 741
Score = 75.0 bits (185), Expect = 1e-13
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 45/153 (29%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I ++D +R + +AI + + GI M+TGDN A +IA + GI D+
Sbjct: 562 LIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI-----DF------- 609
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
+ LL P DK V ++++ +A+ GDG
Sbjct: 610 ------------RAGLL--------------PEDKVKAV-----TELNQ-HAPLAMVGDG 637
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILT 785
ND PA+K A +G AMG +GTDVA E +D LT
Sbjct: 638 INDAPAMKAASIGIAMG-SGTDVALETADAALT 669
Score = 57.7 bits (140), Expect = 3e-08
Identities = 92/405 (22%), Positives = 154/405 (38%), Gaps = 131/405 (32%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGEL 229
+R E +++ + D+ GD+ ++ G LPADG L+ S DES+LTGES V++
Sbjct: 247 RLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLL-SPFASFDESALTGESIPVER--- 302
Query: 230 FDPMVLSGTHVMEGSGKMVVTAV---GVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRD 286
+G V G+ V + V S+ G
Sbjct: 303 -----ATGEKVPAGA--TSVDRLVTLEVLSEPG--------------------------- 328
Query: 287 EESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKK 346
SAI+ I + +E AE E+++ ++ + + + +I Y + + + +VIL+
Sbjct: 329 -ASAIDRI-LHLIEEAE---ERRAPIERFIDRFS-RI-YTPAIMLVALLVILVPPLL--- 378
Query: 347 FVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGL----PLAVTLSLAYSVKKMMKDNNL 402
F +EW IY G+T+L++ P L P A+T LA + ++ L
Sbjct: 379 FAAPWQEW--IY---------RGLTLLLIGCPCALVISTPAAITSGLAAAARR----GAL 423
Query: 403 VRHLDACETMGNATAICSDKTGTLT--TNRMTAV-------------------------- 434
++ A E +G T + DKTGTLT ++T +
Sbjct: 424 IKGGAALEQLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLALAAAVEQGSTHPL 483
Query: 435 -QAYVCEVQYKNIPKYEDIPEDIASKIVEGISVN---SGYTSKIMAPENANELPKQV--- 487
QA V E Q + + IPE + + + G + +G I AP L
Sbjct: 484 AQAIVREAQVRGLA----IPEAESQRALAGSGIEGQVNGERVLICAPGKLPPLADAFAGQ 539
Query: 488 ------GNKTECALLGFVVAIGKNYQ---------TVRDDLPEEV 517
KT VV + +N T+R D + +
Sbjct: 540 INELESAGKT-------VVLVLRNDDVLGLIALQDTLRADARQAI 577
>gnl|CDD|152858 pfam12424, ATP_Ca_trans_C, Plasma membrane calcium transporter ATPase
C terminal. This domain family is found in eukaryotes,
and is approximately 60 amino acids in length. The family
is found in association with pfam00689, pfam00122,
pfam00702, pfam00690. There is a conserved QTQ sequence
motif. This family is the C terminal of a calcium
transporting ATPase located in the plasma membrane.
Length = 67
Score = 65.9 bits (161), Expect = 2e-13
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 1047 ILWLRGLTRLQTQLRVIRAFKSNLEDLEERR---SAQSLRSARSQLGNQR---PLSDITY 1100
ILW+RGLTRLQTQ+RV++AF+S L+ E R S S+ S S LS I
Sbjct: 3 ILWIRGLTRLQTQIRVVKAFRSGLDAREGIRKPTSLASIHSFMSPGPEFAIRDELSRIPL 62
Query: 1101 IDE 1103
+DE
Sbjct: 63 LDE 65
>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional.
Length = 834
Score = 73.2 bits (180), Expect = 5e-13
Identities = 51/164 (31%), Positives = 74/164 (45%), Gaps = 43/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
++ I DP+R + A+++ +AG + M+TGDN TA +IA + GI
Sbjct: 644 LLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID------------- 690
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
V+A P K +K + S GR+V A+ GDG
Sbjct: 691 ------------------------EVIAGVLPDGKAEAIKRLQ----SQGRQV-AMVGDG 721
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND PAL +ADVG AMG G+DVA E + I L + + A+
Sbjct: 722 INDAPALAQADVGIAMG-GGSDVAIETAAITLMRHSLMGVADAL 764
Score = 47.4 bits (113), Expect = 4e-05
Identities = 66/257 (25%), Positives = 104/257 (40%), Gaps = 67/257 (26%)
Query: 177 KQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGELFDPMVLS 236
K + + D+ G + ++ GD +P DG + Q + +DE+ LTGE +KGE V +
Sbjct: 334 KSVPLADVQPGMLLRLTTGDRVPVDGEITQG-EAWLDEAMLTGEPIPQQKGE--GDSVHA 390
Query: 237 GTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKK--KKRDEESAIEAI 294
GT V +GS +AVG ++ I + V+Q + K + + D+ SA+
Sbjct: 391 GTVVQDGSVLFRASAVGSHTTLSRIIRM--------VRQAQSSKPEIGQLADKISAV--- 439
Query: 295 DMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVILISQYCVKKFVIEDEEW 354
PV V IA+++ I W
Sbjct: 440 -FVPVVVV---------------------------IALVSAAI----------------W 455
Query: 355 KAIYF----REFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACE 410
YF + V ++ TVL++A P L LA +S+ V + + LVR DA +
Sbjct: 456 ---YFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDADALQ 512
Query: 411 TMGNATAICSDKTGTLT 427
+ DKTGTLT
Sbjct: 513 RASTLDTLVFDKTGTLT 529
>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B;
Provisional.
Length = 673
Score = 67.4 bits (164), Expect = 3e-11
Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 49/215 (22%)
Query: 621 ESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVK 680
E N + L VI ++D ++ + E ++ + GI M TGDN TA +IA + G+
Sbjct: 428 EDNEI-----LGVIYLKDVIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVD- 481
Query: 681 PGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKIS 740
R +A P DK +++ +
Sbjct: 482 ------------------------------------RFVAECKPEDKINVIR-----EEQ 500
Query: 741 AGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGR 800
A +VA+TGDGTND PAL +A+VG AM +GT AKEA+++I D N + +++ V+ G+
Sbjct: 501 AKGHIVAMTGDGTNDAPALAEANVGLAMN-SGTMSAKEAANLIDLDSNPTKLMEVVLIGK 559
Query: 801 NVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSP 835
+ + F + N +A A + A + P
Sbjct: 560 QLLMTRGSLTTFSIA-NDIAKYFAILPAMFMAAMP 593
Score = 38.1 bits (88), Expect = 0.027
Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 75/312 (24%)
Query: 151 KEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDL 210
++ Q +I+ + + +I ++LK+ G I ++ G+ +P DG +I L
Sbjct: 98 RQTQTEMKARRIKQDGSYEMIDASDLKK--------GHIVRVATGEQIPNDGKVI--KGL 147
Query: 211 -KIDESSLTGESDHVKK--GELFDPMVLSGTHVMEGSGKMVVTA-VGVNSQAGIIFTLLG 266
+DES++TGES V K G FD V+ GT V ++ +T+ G + +I + G
Sbjct: 148 ATVDESAITGESAPVIKESGGDFDN-VIGGTSVASDWLEVEITSEPGHSFLDKMIGLVEG 206
Query: 267 ATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYA 326
AT +KK E A+ + M
Sbjct: 207 AT-------------RKKTPNEIALFTLLM------------------------------ 223
Query: 327 GSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVT 386
T+ I+ +V++++ Y + KF + F + + L+ GL A+
Sbjct: 224 --TLTIIFLVVILTMYPLAKF---------LNFNLSIAMLIALAVCLIPTTIGGLLSAIG 272
Query: 387 LSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLT-TNRMTAVQAYVCEVQYKN 445
++ + ++ + N L + + ET G+ + DKTGT+T NRM V ++
Sbjct: 273 IA---GMDRVTQFNILAKSGRSVETCGDVNVLILDKTGTITYGNRMADAFIPVKSSSFER 329
Query: 446 IPK--YEDIPED 455
+ K YE D
Sbjct: 330 LVKAAYESSIAD 341
>gnl|CDD|214842 smart00831, Cation_ATPase_N, Cation transporter/ATPase, N-terminus.
This entry represents the conserved N-terminal region
found in several classes of cation-transporting P-type
ATPases, including those that transport H+, Na+, Ca2+,
Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange
P-ATPases, this domain is found in the catalytic alpha
chain. In gastric H+/K+-ATPases, this domain undergoes
reversible sequential phosphorylation inducing
conformational changes that may be important for
regulating the function of these ATPases.
Length = 75
Score = 59.9 bits (146), Expect = 3e-11
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 41 EICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIA 100
E+ ++L T +GL S + R E +G N +PP + L + + IL A
Sbjct: 11 EVLERLQTDLEKGL--SSEEAARRLERYGPNELPPPKKTSPLLRFLRQFHNPLIYILLAA 68
Query: 101 ALVSLGL 107
A++S L
Sbjct: 69 AVLSALL 75
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle, which
is the least well conserved region of the alignment,
between residues 16 and 96 of Pseudomonas sp.
(S)-2-haloacid dehalogenase 1. The rest of the fold is
composed of the core alpha/beta domain. Those members
with the characteristic DxD triad at the N-terminus are
probably phosphatidylglycerolphosphate (PGP)
phosphatases involved in cardiolipin biosynthesis in the
mitochondria.
Length = 187
Score = 49.2 bits (117), Expect = 2e-06
Identities = 39/145 (26%), Positives = 57/145 (39%), Gaps = 31/145 (21%)
Query: 619 DDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGI 678
V L L +I + DP+ P EA+K+ + AGI + ++TGDN TA +IA G+
Sbjct: 74 GATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIKLAILTGDNRLTANAIARLLGL 133
Query: 679 VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSK 738
D L+ + K P++ LA +
Sbjct: 134 ----FDALVS------------ADLYGLVGVGKPDPKIFELAL---------------EE 162
Query: 739 ISAGREVVAVTGDGTNDGPALKKAD 763
+ E V + GDG ND PA K A
Sbjct: 163 LGVKPEEVLMVGDGVNDIPAAKAAG 187
>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional.
Length = 1178
Score = 51.1 bits (122), Expect = 3e-06
Identities = 45/171 (26%), Positives = 72/171 (42%), Gaps = 38/171 (22%)
Query: 521 VYTFNSVRKSMSTVI--PKKNGYRVYTKGASEIILKKCSYIYGRN------GHLEKFTKD 572
++ F+S RK MS ++ P K +V+ KGA + N HL ++
Sbjct: 608 LHEFDSDRKRMSVILGCPDKT-VKVFVKGADTSMFSVIDRSLNMNVIRATEAHLHTYSSL 666
Query: 573 MQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDD-----------E 621
GLRT+ + ++ + +E Q H +
Sbjct: 667 ----------------GLRTLVVGMREL--NDSEFEQWHFSFEAASTALIGRAALLRKVA 708
Query: 622 SNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSI 672
SN+ ++LT L IED ++ VPEAI+ + AGI + ++TGD TA SI
Sbjct: 709 SNVENNLTILGASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISI 759
Score = 38.3 bits (89), Expect = 0.026
Identities = 31/97 (31%), Positives = 52/97 (53%), Gaps = 6/97 (6%)
Query: 130 GAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVIRQNELKQIFVGDIVVGDI 189
GA+IL + V+LVTA D + E R ++IE V+ ++ ++ DI VG+I
Sbjct: 137 GASIL-PLAFVLLVTAVKD-AYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEI 194
Query: 190 CQIKYGDLLPADGILIQSND----LKIDESSLTGESD 222
+I+ D LP D +L+ ++D + +L GES+
Sbjct: 195 IKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESN 231
Score = 37.6 bits (87), Expect = 0.051
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 10/95 (10%)
Query: 361 EFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNL----------VRHLDACE 410
E F++ V V + +P L +++ L M++D+ + R L+ E
Sbjct: 389 EIFFTFLMSVIVFQIMIPISLYISMELVRVGQAYFMIRDDQMYDEASNSRFQCRALNINE 448
Query: 411 TMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKN 445
+G + SDKTGTLT N+M A + V Y +
Sbjct: 449 DLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSD 483
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 43.9 bits (104), Expect = 2e-04
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 743 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
EV+A GD TND L+ A +G AMG + KE +D + T ++ + +A+
Sbjct: 206 EEVIAF-GDSTNDIEMLEVAGLGVAMG-NADEELKELADYVTTSNDEDGVAEAL 257
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 41.9 bits (99), Expect = 0.001
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 726 DKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILT 785
K + ++ + + + E V GDG ND L+ A G AMG + K +D + T
Sbjct: 188 SKGSALQSLAE-ALGISLEDVIAFGDGMNDIEMLEAAGYGVAMG-NADEELKALADYV-T 244
Query: 786 DDN 788
D N
Sbjct: 245 DSN 247
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many also
possess a small cap domain, the fold and function of
which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 40.0 bits (94), Expect = 0.001
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 26/153 (16%)
Query: 618 WDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCG 677
D E I E + P V EA+K+ + GI + + T + + + G
Sbjct: 11 LDSEPGIAEIE--------ELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELG 62
Query: 678 IVKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPS-DKYTLVKGMID 736
+ D +I +NG + ++ P+ DK ++
Sbjct: 63 LDDY-FDPVI-----------TSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLG 110
Query: 737 SKISAGREVVAVTGDGTNDGPALKKA-DVGFAM 768
EV+ V GD ND K A +G A+
Sbjct: 111 VDPE---EVLMV-GDSLNDIEMAKAAGGLGVAV 139
>gnl|CDD|233437 TIGR01491, HAD-SF-IB-PSPlk, HAD-superfamily, subfamily-IB
PSPase-like hydrolase, archaeal. This hypothetical
equivalog is a member of the IB subfamily (TIGR01488) of
the haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. The sequences modelled
by This model are all from archaeal species. The
phylogenetically closest group of sequences to these are
phosphoserine phosphatases (TIGR00338). There are no
known archaeal phosphoserine phosphatases, and no
archaea fall within TIGR00338. It is likely, then, that
This model represents the archaeal branch of the PSPase
equivalog.
Length = 201
Score = 39.1 bits (91), Expect = 0.006
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 21/136 (15%)
Query: 637 EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRR 696
E +R E ++ + G+ +V+G + A+ +A K DY+ N
Sbjct: 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNP-----DYVYS-----NEL 127
Query: 697 VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 756
V D G +Q +RV + +K V+ + +++ GD ND
Sbjct: 128 VFDEKGFIQP------DGIVRV----TFDNKGEAVERL-KRELNPSLTETVAVGDSKNDL 176
Query: 757 PALKKADVGFAMGITG 772
P + AD+ ++G G
Sbjct: 177 PMFEVADISISLGDEG 192
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 39.1 bits (92), Expect = 0.008
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKA 795
EV+A GDG ND L+ A +G AMG + K A+D + +N + KA
Sbjct: 204 EVIAF-GDGENDIEMLELAGLGVAMG-NASPEVKAAADYVTGSNNEDGVAKA 253
>gnl|CDD|233435 TIGR01488, HAD-SF-IB, Haloacid Dehalogenase superfamily, subfamily
IB, phosphoserine phosphatase-like. This model
represents a subfamily of the Haloacid Dehalogenase
superfamily of aspartate-nucleophile hydrolases.
Subfamily IA, B, C and D are distinguished from the rest
of the superfamily by the presence of a variable domain
between the first and second conserved catalytic motifs.
In subfamilies IA and IB, this domain consists of an
alpha-helical bundle. It was necessary to model these
two subfamilies separately, breaking them at a an
apparent phylogenetic bifurcation, so that the resulting
model(s) are not so broadly defined that members of
subfamily III (which lack the variable domain) are
included. Subfamily IA includes the enzyme phosphoserine
phosphatase (TIGR00338) as well as three hypothetical
equivalogs. Many members of these hypothetical
equivalogs have been annotated as PSPase-like or
PSPase-family proteins. In particular, the hypothetical
equivalog which appears to be most closely related to
PSPase contains only Archaea (while TIGR00338 contains
only eukaryotes and bacteria) of which some are
annotated as PSPases. Although this is a reasonable
conjecture, none of these sequences has sufficient
evidence for this assignment. If such should be found,
this model should be retired while the PSPase model
should be broadened to include these sequences [Unknown
function, Enzymes of unknown specificity].
Length = 177
Score = 36.2 bits (84), Expect = 0.042
Identities = 31/127 (24%), Positives = 43/127 (33%), Gaps = 25/127 (19%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
+RP E I + GI +V+G +A K GI D + LE +
Sbjct: 73 ALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGI-----DDVFANRLEFDDNGL 127
Query: 696 RVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTND 755
G+V K L+ L S +++AV GD ND
Sbjct: 128 LTGPIEGQVNPEGECKG-KVLKELLEESKITLK---------------KIIAV-GDSVND 170
Query: 756 GPALKKA 762
P LK A
Sbjct: 171 LPMLKLA 177
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and
metabolism].
Length = 212
Score = 36.1 bits (84), Expect = 0.058
Identities = 27/136 (19%), Positives = 46/136 (33%), Gaps = 33/136 (24%)
Query: 638 DPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRV 697
+ P E + + AG + +++G IA + GI DY+ +
Sbjct: 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGI-----DYV------VANEL 124
Query: 698 RDNNGEVQQNLLDKVWP------RLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGD 751
++G++ ++ + LR LA E VA GD
Sbjct: 125 EIDDGKLTGRVVGPICDGEGKAKALRELAAELGIPL---------------EETVAY-GD 168
Query: 752 GTNDGPALKKADVGFA 767
ND P L+ A + A
Sbjct: 169 SANDLPMLEAAGLPIA 184
>gnl|CDD|232927 TIGR00338, serB, phosphoserine phosphatase SerB. Phosphoserine
phosphatase catalyzes the reaction 3-phospho-serine +
H2O = L-serine + phosphate. It catalyzes the last of
three steps in the biosynthesis of serine from
D-3-phosphoglycerate. Note that this enzyme acts on free
phosphoserine, not on phosphoserine residues of
phosphoproteins [Amino acid biosynthesis, Serine
family].
Length = 219
Score = 35.4 bits (82), Expect = 0.088
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 25/157 (15%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRVR 698
P+ E +K + G + +++G A + K G+ + L +E +
Sbjct: 85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGKLT---- 140
Query: 699 DNNGEVQQNLLDKVWPRLRVLARSSPSDKY-TLVKGMIDSKISAGREVVAVTGDGTNDGP 757
G V+ ++D S K TL+ + IS VAV GDG ND
Sbjct: 141 ---GLVEGPIVDA-------------SYKGKTLLILLRKEGISP-ENTVAV-GDGANDLS 182
Query: 758 ALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVK 794
+K A +G A ++ +DI + + + I+
Sbjct: 183 MIKAAGLGIAFN--AKPKLQQKADICINKKDLTDILP 217
>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This
family is related to the ABC-2 membrane transporter
family.
Length = 263
Score = 35.4 bits (82), Expect = 0.14
Identities = 33/139 (23%), Positives = 51/139 (36%), Gaps = 17/139 (12%)
Query: 805 SISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEM--PT 862
F + V + AF A + L + LI L S A+A E T
Sbjct: 35 PSLGDDLFSGLKSAVELDSAFEYVSAG----SGIIAFL-IPLIAAVLGSDAIAGEKERGT 89
Query: 863 PDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLP 922
LLL +P R++ L+ K +IG L++ IL LL + A SL
Sbjct: 90 LKLLLSRPVSRSEILLGK-----LIGLLAVGLILAIAILVGV--LLAL-AVTAALGDSLS 141
Query: 923 TQHF--TIIFNTFVLMTLF 939
++ + +L+ L
Sbjct: 142 LGDLLLLVLASVLLLLALL 160
>gnl|CDD|234910 PRK01158, PRK01158, phosphoglycolate phosphatase; Provisional.
Length = 230
Score = 34.9 bits (81), Expect = 0.16
Identities = 43/203 (21%), Positives = 77/203 (37%), Gaps = 52/203 (25%)
Query: 646 EAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKP--GEDY-LILEGKEFNRRVRDNNG 702
EAI+K ++ GI + + TG+ + AR+ A G P E+ +I G + R +
Sbjct: 27 EAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVISVGFDGKRIFLGDIE 86
Query: 703 EVQQ--NLLDKVWPRLR---------------VLARSSPSDKY-TLVKG------MIDSK 738
E ++ + L K +P L R+ P ++ L++ ++DS
Sbjct: 87 ECEKAYSELKKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSG 146
Query: 739 ---------ISAG--------------REVVAVTGDGTNDGPALKKADVGFAMGITGTDV 775
++ G EV A+ GD ND + A G A+ +
Sbjct: 147 FAIHIKSPGVNKGTGLKKLAELMGIDPEEVAAI-GDSENDLEMFEVAGFGVAVA-NADEE 204
Query: 776 AKEASDIILTDDNFSSIVKAVMW 798
KEA+D + + +A+
Sbjct: 205 LKEAADYVTEKSYGEGVAEAIEH 227
>gnl|CDD|213629 TIGR01489, DKMTPPase-SF, 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase. This phosphatase is a member of the IB
subfamily (TIGR01488) of the haloacid dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases. With
the exception of OMNI|NTL01BS01361 from B. subtilis and
GP|15024582 from Clostridium acetabutylicum, the members
of this group are all eukaryotic, spanning metazoa,
plants and fungi. The B. subtilus gene (YkrX, renamed
MtnX) is part of an operon for the conversion of
methylthioribose (MTR) to methionine. It works with the
enolase MtnW, a RuBisCO homolog. The combination of MtnW
and MtnX achieves the same overall reaction as the
enolase-phosphatase MtnC. The function of MtnX was shown
by Ashida, et al. (2003) to be
2,3-diketo-5-methylthio-1-phosphopentane phosphatase,
rather than 2,3-diketo-5-methylthio-1-phosphopentane
phosphatase as proposed earlier. See the Genome Property
for methionine salvage for more details. In eukaryotes,
methionine salvage from methylthioadenosine also occurs.
It seems reasonable that members of this family in
eukaryotes fulfill a similar role as in Bacillus. A more
specific, equivalog-level model is TIGR03333. Note that
a member of this family from S. cerevisiae is annotated
as a "probable membrane protein" due to a predicted
transmembrane helix. The region in question contains the
second of the three conserved HAD superfamily catalytic
motifs and thus, considering the fold of the HAD
catalytic domain, is unlikely to be a transmembrane
region in fact [Central intermediary metabolism, Other].
Length = 188
Score = 33.9 bits (78), Expect = 0.23
Identities = 31/136 (22%), Positives = 45/136 (33%), Gaps = 28/136 (20%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEG---KE 692
P+ P E I + GI +++ G D+ I LEG K+
Sbjct: 72 PIDPGFKEFIAFIKEHGIDFIVISD------------------GNDFFIDPVLEGIGEKD 113
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISA-GREVVAVTGD 751
+ N + VWP S KG + K+S + + GD
Sbjct: 114 VFIEIYSNPASFDNDGRHIVWPHH---CHGCCSCPCGCCKGKVIHKLSEPKYQHIIYIGD 170
Query: 752 GTNDGPALKKADVGFA 767
G D K +DV FA
Sbjct: 171 GVTDVCPAKLSDVVFA 186
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 32.4 bits (74), Expect = 0.83
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
E VA GD ND + A+ D KE +D + ++ +V+ +
Sbjct: 164 EEVAAIGDSENDIDLFRVVGFKVAVA-NADDQLKEIADYVTSNPYGEGVVEVL 215
>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function
prediction only].
Length = 152
Score = 31.8 bits (72), Expect = 1.0
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 699 DNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPA 758
D G + Q P RV A + P K +++ ++ E V + G+G ND A
Sbjct: 54 DRKGSLVQLAEFVGIPVERVFAGADPEMKAKIIR-----ELKKRYEKVVMVGNGANDILA 108
Query: 759 LKKADVGFAMGITGTDV---AKEASDIILTD 786
L++AD+G I V +D++L +
Sbjct: 109 LREADLGI-CTIQQEGVPERLLLTADVVLKE 138
>gnl|CDD|179286 PRK01368, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 454
Score = 32.5 bits (74), Expect = 1.2
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 11/77 (14%)
Query: 535 IPKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR-TI 593
IPK+ G S+I K +Y YG+ K++ +N+++ + CD L
Sbjct: 351 IPKEGGIEEIKPYFSKI---KKAYFYGQ-------AKEIFANTAKNIVDFVICDNLEQAF 400
Query: 594 SIAYKDFVTDKAEINQV 610
+AYKD V D AE+ +
Sbjct: 401 DLAYKDAVGDNAEVKNI 417
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 31.6 bits (72), Expect = 1.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 268 TDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVE---------VAEKHDEKKSVLQAKLTK 318
+ E + ++ KK++E A + +M+ ++ + EK LQ KLT+
Sbjct: 76 DEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSS--LQTKLTE 133
Query: 319 --LAIQI 323
L I I
Sbjct: 134 EGLLITI 140
>gnl|CDD|234132 TIGR03167, tRNA_sel_U_synt, tRNA 2-selenouridine synthase. The
Escherichia coli YbbB protein was shown to encode a
selenophosphate-dependent tRNA 2-selenouridine synthase,
essential for modification of some tRNAs to replace a
sulfur atom with selenium. This enzyme works with SelD,
the selenium donor protein, which also acts in
selenocysteine incorporation. Although the members of
this protein family show a fairly deep split, sequences
from both sides of the split are supported by
co-occurence with, and often proximity to, the selD gene
[Protein synthesis, tRNA and rRNA base modification].
Length = 311
Score = 31.8 bits (73), Expect = 2.0
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 60 DLE----HRREVFGSNIIPPKPS-KTFLQLVWEALQ 90
DLE HR FG+ + P+PS K F + EAL+
Sbjct: 156 DLEGLANHRGSSFGALGLGPQPSQKRFENALAEALR 191
>gnl|CDD|236823 PRK11021, PRK11021, putative transporter; Provisional.
Length = 410
Score = 31.8 bits (73), Expect = 2.5
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Query: 805 SISKFLQFQLTVNVVAVIVAFIGACAVQ--DSPLKAVQMLWVNLIMDTLA 852
S S LQ + + +VA++VA A ++ D P A + + + L
Sbjct: 135 SSSANLQTVIALLIVALVVAIWWAGDIKPADIPFPAPGSIEWSGLFAALG 184
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 31.9 bits (73), Expect = 2.5
Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 19/84 (22%)
Query: 87 EALQDVTLIIL--EIAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVT 144
L TL L I AL++LGL FY Y W + +V + VT
Sbjct: 247 RILSGSTLTTLLSGIFALLNLGLMFY--------------YSWKLALVAVALALVAIAVT 292
Query: 145 AFNDY---SKEKQFRGLQNQIEGE 165
KE++ L +I G
Sbjct: 293 LVLGLLQVRKERRLLELSGKISGL 316
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 31.0 bits (71), Expect = 3.3
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 1033 SEAAMNTRQQRAAH--ILWL-RGLTRLQTQLRVIRAFKSNLE----DLEERRSAQSLRSA 1085
AA N R+A I L R + L+ +L+ ++ K++LE +LEER + L
Sbjct: 202 QAAARNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAELEERYELE-LADY 260
Query: 1086 RSQLGN 1091
+ +
Sbjct: 261 QDTISE 266
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 30.3 bits (69), Expect = 3.6
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 264 LLGA--TDDEEVKQEKKDKKKKKRDE-ESAIEAIDMKPVEVAEKHDEKK 309
LL A D ++ K+ KK+K+K+++ + A + D E EK
Sbjct: 6 LLKAGLVDKKKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKA 54
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 30.2 bits (68), Expect = 3.9
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 269 DDEEVKQEKKDKKKKKR 285
DD+E K++KK+KKKKK+
Sbjct: 151 DDKERKKKKKEKKKKKK 167
>gnl|CDD|224196 COG1277, NosY, ABC-type transport system involved in multi-copper
enzyme maturation, permease component [General function
prediction only].
Length = 278
Score = 30.5 bits (69), Expect = 4.2
Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 15/138 (10%)
Query: 865 LLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGR---GAEYGSL 921
LLL KP R+ ++ K +G + ++II I F L + G + L
Sbjct: 94 LLLSKPISRSNIVLGK-----FLGALLV-ILIIILISFISLLTLLLLFGFPGNVSSISRL 147
Query: 922 PTQHFTIIFNTFVLMTLFNEINARKIHGQRNVFEGLFTNPIFY--SIWVITMVSQVIIVQ 979
+ + VL+++ I++ + L + I I +++ I V
Sbjct: 148 LLFLGSSLLYGLVLLSISLLISSL----FSSSSLALLVSIILLLLFIIAFSLILLFISVL 203
Query: 980 YGGIAFATHSLTLEQWGW 997
GIA ++L+L +
Sbjct: 204 LIGIAPTLNTLSLLLPLY 221
>gnl|CDD|222207 pfam13536, EmrE, Multidrug resistance efflux transporter. This is a
membrane protein family acting as a multidrug resistance
efflux transporter.
Length = 112
Score = 29.1 bits (66), Expect = 4.4
Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 9/94 (9%)
Query: 932 TFVLMTLFNEINARKIHGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGIAFATHSLT 991
++ M L + +VF L T P + I + + Y + A
Sbjct: 4 RYLFMALLLLLIVLIRGRLGDVFRALKTKPWLWLIL----AGLIGFLFYALLCLALQYGP 59
Query: 992 LEQW-GWCLFFGVGTLVWQQIVTTVPTKRLPKIF 1024
L L + + +RLPK
Sbjct: 60 GWVVAITALTPVFAAL----LGRLLFKQRLPKRE 89
>gnl|CDD|182523 PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase;
Provisional.
Length = 272
Score = 30.4 bits (69), Expect = 4.8
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 743 REVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVM 797
+ VVA GD ND L+ A +G AMG D K +D+++ D+ SI + +
Sbjct: 216 KNVVAF-GDNFNDISMLEAAGLGVAMG-NADDAVKARADLVIGDNTTPSIAEFIY 268
>gnl|CDD|227823 COG5536, BET4, Protein prenyltransferase, alpha subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 328
Score = 30.2 bits (68), Expect = 6.3
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 935 LMTLFNEINARKIHGQRNVFEGLFT---NPIFYSIW 967
LM F +K + R + NP FY+IW
Sbjct: 34 LMGRFRAKRRKKEYSVRALKLTQELIDKNPEFYTIW 69
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 29.6 bits (67), Expect = 6.9
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 10/98 (10%)
Query: 227 GELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGA--TDDEEVKQEKKDKKKKK 284
+F P+ LS ++V AV G+ T+L D E++K+ +K K+ +
Sbjct: 34 NVVFGPL-LSPLPPHLV---ILVAAVIT----GLYITILQKLLIDQEKMKELQKMMKEFQ 85
Query: 285 RDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQ 322
++ A E+ DMK ++ ++ + Q +L K+ +
Sbjct: 86 KEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK 123
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 28.7 bits (64), Expect = 7.8
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 3/60 (5%)
Query: 418 ICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAP 477
D GTLT + + + + + A +++E + + SG ++ P
Sbjct: 1 AVFDLDGTLTDSDTALLLLLEALAEDRRLGLL---GLSDAEELLELVVIVSGSPEPLVRP 57
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.3 bits (69), Expect = 8.2
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 233 MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIE 292
VL + + G ++ ++ + S IIF+ E K+ KKD +K+ R
Sbjct: 51 TVL--ISIFQPRGIFIIASIAM-SLVTIIFSTTTYF--REKKKYKKDVEKRNRSYR---L 102
Query: 293 AIDMKPVEVAEKHDEKKSVL 312
+D K E+ ++++ VL
Sbjct: 103 YLDKKRKELQALSEKQRHVL 122
>gnl|CDD|217430 pfam03217, SLAP, Bacterial surface layer protein.
Length = 120
Score = 28.4 bits (64), Expect = 8.3
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 10/69 (14%)
Query: 521 VYTFNSVRKSMSTV-IPKKNGYRVYTKG----ASEI-----ILKKCSYIYGRNGHLEKFT 570
++S+ +TV I K YRV A I LK +Y+Y +G T
Sbjct: 23 YKAYSSITVYGNTVTINGKKYYRVGENDKYIKAGNIDGTSRTLKHNAYVYNTSGKRANKT 82
Query: 571 KDMQGRLVR 579
K +G V
Sbjct: 83 KLKKGSTVT 91
>gnl|CDD|237263 PRK12999, PRK12999, pyruvate carboxylase; Reviewed.
Length = 1146
Score = 30.1 bits (69), Expect = 9.1
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 643 EVPEAIKKCQRAGIT--------IRMVTGDNINTARSIATKCGI-VKPGEDYLI 687
E PE + C AGIT +R+ GD + AR+ A K G+ V PG + I
Sbjct: 91 ENPEFARACAEAGITFIGPTAEVLRL-LGDKV-AARNAAIKAGVPVIPGSEGPI 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0789 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 57,597,421
Number of extensions: 5863103
Number of successful extensions: 6779
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6628
Number of HSP's successfully gapped: 155
Length of query: 1119
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1012
Effective length of database: 6,191,724
Effective search space: 6266024688
Effective search space used: 6266024688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.3 bits)