RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10301
(1119 letters)
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type
ATPase, membrane protein, hydrolase, aluminium fluoride,
ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A
Length = 1034
Score = 636 bits (1642), Expect = 0.0
Identities = 228/1046 (21%), Positives = 394/1046 (37%), Gaps = 163/1046 (15%)
Query: 41 EICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIA 100
E+ +K TS +GL S + G N + P L ++ +A
Sbjct: 60 ELEQKYQTSATKGL--SASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVA 117
Query: 101 ALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQN 160
A + L ++ A++ V+V + ++ +N
Sbjct: 118 AAICLIAFAIQASEGDLTTDDN----LYLALALIAVVVVTGCFGYYQEFKSTNIIASFKN 173
Query: 161 QIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGE 220
+ + VIR + QI +VVGD+ ++K GD +PAD ++Q+ K+D SSLTGE
Sbjct: 174 LVPQQAT--VIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGE 231
Query: 221 SDHVKKGELFDP--------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEE 272
S+ + + T +EG+ + +V G + G I +L ++E
Sbjct: 232 SEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVNTGDRTIIGRIASLASGVENE- 290
Query: 273 VKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAI 332
K+ + ++ I
Sbjct: 291 ------------------------------------KTPIAIEIEHFVDIIAGLAILFGA 314
Query: 333 LTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYS 392
++ + F+R + + ++V VPEGL VT+ L+ +
Sbjct: 315 TFFIVAM-----------------CIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLT 357
Query: 393 VKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDI 452
K++ N +V++L+A ET+G+ + ICSDKTGTLT NRMT + + + ED
Sbjct: 358 AKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIH-SADTTEDQ 416
Query: 453 PEDIASKIVEGISVNSGYTSKIMA--------PENANELPKQ---VGNKTECALLGFVVA 501
+ E +++ + +G+ +E ALL F
Sbjct: 417 SGQTFDQSSETWR----ALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSEL 472
Query: 502 IGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVI----PKKNGYRVYTKGASEIILKK 555
N R+ P +V FNS K ++ P+ + + KGA E +L++
Sbjct: 473 TLGNAMGYRERFP-----KVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLER 527
Query: 556 CSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGD 615
CS I G + + + + G R +
Sbjct: 528 CSSIL-IKGQELPLDEQWREA-FQTAYLSLGGLGERVLGFCQLYLSEKDYPPGY-----A 580
Query: 616 PNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATK 675
+ + + S L+ ++ + DP R VP+A+ KC+ AGI + MVTGD+ TA++IA
Sbjct: 581 FDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAAS 640
Query: 676 CGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNL--------------LDKVWPRLR--VL 719
GI+ G + + V N + + L + V
Sbjct: 641 VGIISEGSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVF 700
Query: 720 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 779
AR+SP K +V+ +VAVTGDG ND PALKKAD+G AMGI G+D AK A
Sbjct: 701 ARTSPQQKLVIVESC-----QRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNA 755
Query: 780 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVN---VVAVIVAFIGACAVQDSPL 836
+D+IL DDNF+SIV V GR ++D++ K + + LT N + ++ + + PL
Sbjct: 756 ADMILLDDNFASIVTGVEQGRLIFDNLKKSIAYTLTKNIPELTPYLIYITVSVPL---PL 812
Query: 837 KAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMM--KNIIGQAIYQL 894
+ +L++ L D S++LA E D++ +P + + + + Q
Sbjct: 813 GCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNPKRDRLVNEPLAAYSYFQIGAIQS 872
Query: 895 VIIFGILFFG----------------------DKLLDIPTGRGAEYGSLPTQH---FTII 929
F F + L G+ +G Q +T+
Sbjct: 873 FAGFTDYFTAMAQEGWFPLLCVGLRPQWENHHLQDLQDSYGQEWTFGQRLYQQYTCYTVF 932
Query: 930 FNTFVLMTLFNEINARKIHGQRNVFE-GLFTNPIFYSIWVITMVSQVIIVQYGGI--AFA 986
F + + + + + + + F+ G F N I V + + G+ F
Sbjct: 933 FISIEMCQIADVLIRKTRR--LSAFQQGFFRNRILVIAIVFQVCIGCFLCYCPGMPNIFN 990
Query: 987 THSLTLEQWGWCLFFGVGTLVWQQIV 1012
+ + W + FG+ V+ +I
Sbjct: 991 FMPIRFQWWLVPMPFGLLIFVYDEIR 1016
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 635 bits (1639), Expect = 0.0
Identities = 242/1042 (23%), Positives = 412/1042 (39%), Gaps = 152/1042 (14%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
+ E+ K T GL + + G N + P P+ L I+L
Sbjct: 53 LDELHNKYGTDLTRGL--TNARAKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLW 110
Query: 99 IAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGL 158
I A+ L F G ++ ++E G + VIV + + + +
Sbjct: 111 IGAI----LCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSYYQEAKSSRIMDSF 166
Query: 159 QNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLT 218
+N + + VIR E I +V GD+ ++K GD +PAD +I ++ K+D SSLT
Sbjct: 167 KNMVPQQAL--VIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLT 224
Query: 219 GESDHVKKGELFDP--------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDD 270
GES+ + F + T+ +EG+ + VV G + G I TL +
Sbjct: 225 GESEPQTRSPEFSSENPLETRNIAFFSTNCVEGTARGVVVYTGDRTVMGRIATLASGLEV 284
Query: 271 EEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTI 330
++ + ++ I T
Sbjct: 285 G-------------------------------------RTPIAIEIEHFIHII-----TG 302
Query: 331 AILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLA 390
+ + + F++ I ++ + + ++V VPEGL VT+ L
Sbjct: 303 VAVFLGVSF-------FILS-----LILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLT 350
Query: 391 YSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQY-----KN 445
+ K+M + N LV++L+A ET+G+ + ICSDKTGTLT NRMT + + +N
Sbjct: 351 LTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMWFDNQIHEADTTEN 410
Query: 446 IPKYEDIPEDIASKIVEGISV--NSGYTSKIMAPENANELPKQ--VGNKTECALLGFVVA 501
+ I+ N + A ++ + K+ G+ +E ALL +
Sbjct: 411 QSGAAFDKTSATWSALSRIAALCNR---AVFQAGQDNVPILKRSVAGDASESALLKCIEL 467
Query: 502 IGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVIPKKNG----YRVYTKGASEIILKK 555
+ Q +RD P ++ FNS K ++ + Y + KGA E IL +
Sbjct: 468 CCGSVQGMRDRNP-----KIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDR 522
Query: 556 CSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGD 615
CS I NG E +DM+ +N + G R + + DK +
Sbjct: 523 CSTIL-LNGAEEPLKEDMKEA-FQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADE 580
Query: 616 PNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATK 675
PN + L + ++ + DP R VP+A+ KC+ AGI + MVTGD+ TA++IA
Sbjct: 581 PN-----FPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKG 635
Query: 676 CGIVKPGEDYLILEGKEFNRRVRDNNGEVQQ----------NLLDKVWPRL------RVL 719
GI+ G + + N + N + +L +V + V
Sbjct: 636 VGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVLDDILHYHTEIVF 695
Query: 720 ARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEA 779
AR+SP K +V+G +VAVTGDG ND PALKKAD+G AMGI+G+DV+K+A
Sbjct: 696 ARTSPQQKLIIVEGC-----QRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSDVSKQA 750
Query: 780 SDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAV 839
+D+IL DDNF+SIV V GR ++D++ K + + LT N+ + + PL V
Sbjct: 751 ADMILLDDNFASIVTGVEEGRLIFDNLKKSIAYTLTSNIPEITPFLVFIIGNVPLPLGTV 810
Query: 840 QMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFG 899
+L ++L D + +++LA E D++ R+P + + ++ I + + G
Sbjct: 811 TILCIDLGTDMVPAISLAYEQAESDIMKRQPRNPKTDKLVNERLISMAYGQIGMIQALGG 870
Query: 900 ILFF------------------------GDKLLDIPTGRGAEYGSLPTQH---FTIIFNT 932
+ ++ G+ Y T F +
Sbjct: 871 FFSYFVILAENGFLPMDLIGKRVRWDDRWISDVEDSFGQQWTYEQRKIVEFTCHTSFFIS 930
Query: 933 FVLMTLFNEINARKIHGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGI--AFATHSL 990
V++ + I + ++F+ N I + G A + L
Sbjct: 931 IVVVQWADLIICKTRR--NSIFQQGMKNKILIFGLFEETALAAFLSYCPGTDVALRMYPL 988
Query: 991 TLEQWGWCLFFGVGTLVWQQIV 1012
W + + ++ ++
Sbjct: 989 KPSWWFCAFPYSLIIFLYDEMR 1010
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 628 bits (1621), Expect = 0.0
Identities = 272/1057 (25%), Positives = 453/1057 (42%), Gaps = 164/1057 (15%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
E S GL + ++ E +G N +P + K+ +LV E +D+ + IL
Sbjct: 10 TEECLAYFGVSETTGL--TPDQVKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILL 67
Query: 99 IAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGL 158
+AA +S L+++ + EET ++E IL+ +I +V + + + E L
Sbjct: 68 LAACISFVLAWFE-------EGEETITAFVEPFVILLILIANAIVGVWQERNAENAIEAL 120
Query: 159 QNQIEGEHKFAVIR--QNELKQIFVGDIVVGDICQIKYGDLLPADG--ILIQSNDLKIDE 214
+ K V R + +++I DIV GDI ++ GD +PAD + I+S L++D+
Sbjct: 121 KEYEPEMGK--VYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQ 178
Query: 215 SSLTGESDHVKK--GELFDP---------MVLSGTHVMEGSGKMVVTAVGVNSQAGIIFT 263
S LTGES V K + DP M+ SGT++ G +V GV+++ G I
Sbjct: 179 SILTGESVSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKALGIVATTGVSTEIGKIRD 238
Query: 264 LLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQI 323
+ AT+ + K+ LQ KL + Q+
Sbjct: 239 QMAATEQD-------------------------------------KTPLQQKLDEFGEQL 261
Query: 324 GYAGSTIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPL 383
S I + +I I D + R + +F + V + V A+PEGLP
Sbjct: 262 SKVISLICVAVWLINI-------GHFNDPVHGGSWIRGAIYYFKIAVALAVAAIPEGLPA 314
Query: 384 AVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQY 443
+T LA ++M K N +VR L + ET+G + ICSDKTGTLTTN+M+ + ++ +
Sbjct: 315 VITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMFIIDKVD 374
Query: 444 KNIPKYEDIPEDIASKIVEGISVNSGYTSKIMAPENANEL-------------------- 483
+ + ++ EG + + + + EL
Sbjct: 375 GDFCSLNEFSITGSTYAPEGEVLKNDKPIRSGQFDGLVELATICALCNDSSLDFNETKGV 434
Query: 484 PKQVGNKTECALLGFVVAIGKNYQTVRDDLP-----------EEVFTRVYT--FNSVRKS 530
++VG TE AL V + VR+ ++ + +T F+ RKS
Sbjct: 435 YEKVGEATETALTTLVEKMNVFNTEVRNLSKVERANACNSVIRQLMKKEFTLEFSRDRKS 494
Query: 531 MSTVI------PKKNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGR-LVRNVIE 583
MS G +++ KGA E ++ +C+Y+ T ++ + L
Sbjct: 495 MSVYCSPAKSSRAAVGNKMFVKGAPEGVIDRCNYVR-VGTTRVPMTGPVKEKILSVIKEW 553
Query: 584 PMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPE 643
D LR +++A +D + E+ + + LT + V+G+ DP R E
Sbjct: 554 GTGRDTLRCLALATRDTPPKREEMVL------DDSSRFMEYETDLTFVGVVGMLDPPRKE 607
Query: 644 VPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDY--LILEGKEFNRRVRDNN 701
V +I+ C+ AGI + M+TGDN TA +I + GI E+ G+EF D+
Sbjct: 608 VMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADRAYTGREF-----DDL 662
Query: 702 GEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGPALKK 761
+ + R AR PS K +V+ + + E+ A+TGDG ND PALKK
Sbjct: 663 PLAE---QREACRRACCFARVEPSHKSKIVEYL-----QSYDEITAMTGDGVNDAPALKK 714
Query: 762 ADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAV 821
A++G AMG +GT VAK AS+++L DDNFS+IV AV GR +Y+++ +F+++ ++ NV V
Sbjct: 715 AEIGIAMG-SGTAVAKTASEMVLADDNFSTIVAAVEEGRAIYNNMKQFIRYLISSNVGEV 773
Query: 822 IVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKALISKT 881
+ F+ A L VQ+LWVNL+ D L + AL P D++ R P + LIS
Sbjct: 774 VCIFLTAALGLPEALIPVQLLWVNLVTDGLPATALGFNPPDLDIMDRPPRSPKEPLISGW 833
Query: 882 MMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHF--------------- 926
+ + Y G + + G G Y L
Sbjct: 834 LFFRYMAIGGYVGAATVGAAAWW--FMYAEDGPGVTYHQLTHFMQCTEDHPHFEGLDCEI 891
Query: 927 -------TIIFNTFVLMTLFNEINARKIHGQRNVFE-GLFTNP-IFYSIWVITMVSQVII 977
T+ + V + + N +N+ + +++ + N + SI ++M +I
Sbjct: 892 FEAPEPMTMALSVLVTIEMCNALNSLSEN--QSLMRMPPWVNIWLLGSI-CLSMSLHFLI 948
Query: 978 VQYGGIA--FATHSLTLEQWGWCLFFGVGTLVWQQIV 1012
+ + F +L L QW L + + +I+
Sbjct: 949 LYVDPLPMIFKLKALDLTQWLMVLKISLPVIGLDEIL 985
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 508 bits (1310), Expect = e-164
Identities = 187/1024 (18%), Positives = 380/1024 (37%), Gaps = 162/1024 (15%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
+ E+ ++L S EGL + + E R ++FG N + K L+ + + ++E
Sbjct: 19 IEEVFQQLKCSR-EGL--TTQEGEDRIQIFGPNKLEEKKESKLLKF-LGFMWNPLSWVME 74
Query: 99 IAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGL 158
+AA++++ L+ +W + I+ +++ ++ + + L
Sbjct: 75 MAAIMAIALANGDGRPP----------DWQDFVGIICLLVINSTISFIEENNAGNAAAAL 124
Query: 159 QNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLT 218
+ + K V+R + + +V GDI IK GD++PAD L++ + LK+D+S+LT
Sbjct: 125 MAGLAPKTK--VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALT 182
Query: 219 GESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKK 278
GES V K V SG+ +G + VV A GV++ G L+ +T+
Sbjct: 183 GESLPVTKHP--GQEVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDSTNQV------- 233
Query: 279 DKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVIL 338
Q LT IG + +VI
Sbjct: 234 -------------------------------GHFQKVLT----AIGNFCICSIAIGMVIE 258
Query: 339 ISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMK 398
I V+ I R++ + +L+ +P +P +++++A ++ +
Sbjct: 259 I-------IVMY-----PIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQ 306
Query: 399 DNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIAS 458
+ + + A E M +CSDKTGTLT N+++ V + EV K + + +
Sbjct: 307 QGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLS-VDKNLVEVFCKGVE-----KDQVL- 359
Query: 459 KIVEGISVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVF 518
+ A + + + + A++G + + R + E F
Sbjct: 360 ---------------LFAAMASRV---ENQDAIDAAMVGM----LADPKEARAGIREVHF 397
Query: 519 TRVYTFNSVRKSMSTVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRL 577
FN V K + +G + +KGA E IL+ K + D+ +
Sbjct: 398 L---PFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELA-----------KASNDLSKK- 442
Query: 578 VRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIE 637
V ++I+ A GLR++++A + E + + ++ +
Sbjct: 443 VLSIIDKYAERGLRSLAVARQVVPEKTKE------------SPGAP----WEFVGLLPLF 486
Query: 638 DPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFNRRV 697
DP R + E I++ G+ ++M+TGD + + + G+ L G + +
Sbjct: 487 DPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANL 546
Query: 698 RDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDGP 757
++++ + A P KY +VK + + K +V +TGDG ND P
Sbjct: 547 ASIP-------VEELIEKADGFAGVFPEHKYEIVKKLQERK-----HIVGMTGDGVNDAP 594
Query: 758 ALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVN 817
ALKKAD+G A+ TD A+ ASDI+LT+ S I+ AV+ R ++ + + + +++
Sbjct: 595 ALKKADIGIAVA-DATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSIT 653
Query: 818 VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRTKAL 877
+ ++ F+ + + A +L + ++ D + ++ + P
Sbjct: 654 -IRIVFGFMLIALIWEFDFSAFMVLIIAILND-GTIMTISKDRVKPSPTPDSW------- 704
Query: 878 ISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPTQH-FTIIFNTFVLM 936
K + + YQ ++ + K G ++ ++
Sbjct: 705 KLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSII 764
Query: 937 TLFNEINARKIHGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGIAFATHSLTLEQWG 996
+ R + F + + + +++ +I V + G
Sbjct: 765 SQALIFVTRS---RSWSFVERPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAG 821
Query: 997 WCLFFGVGTLVWQQIVTTVPTKRLPKIFSWGRGQPESEAAMNTRQQRAAHILWLRGLTRL 1056
+ + T + + + +W E++ A ++ R
Sbjct: 822 VIWLYSIVTYFPLDVFKFA-IRYILSGKAWLN-LFENKTAFTMKKDYGKEER-EAQWMRG 878
Query: 1057 QTQL 1060
Sbjct: 879 SHHH 882
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein,
P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 478 bits (1232), Expect = e-152
Identities = 185/1027 (18%), Positives = 366/1027 (35%), Gaps = 192/1027 (18%)
Query: 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILE 98
VPE L T GL + ++ RR +G N + + FL+ ++E
Sbjct: 75 VPE--DMLQTDTRVGL--TSEEVVQRRRKYGLNQMKEEKENHFLKF-LGFFVGPIQFVME 129
Query: 99 IAALVSLGLSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGL 158
AA+++ GL +W++ I +++ +V ++ L
Sbjct: 130 GAAVLAAGLE-----------------DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDEL 172
Query: 159 QNQIEGEHKFAVIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSND-LKIDESSL 217
+ + K V+R LK+I ++V GDI Q++ G ++PADG ++ + L++D+S+L
Sbjct: 173 KKTLA--LKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSAL 230
Query: 218 TGESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEK 277
TGES V K + V + + V G +V+TA G N+ G L+ A
Sbjct: 231 TGESLAVDKHK--GDQVFASSAVKRGEAFVVITATGDNTFVGRAAALVNAASGG------ 282
Query: 278 KDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILTVVI 337
L + + + +++
Sbjct: 283 -------------------------------SGHFTEVLNGIGTILLIL---VIFTLLIV 308
Query: 338 LISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMM 397
+S + V+ + + ++ VP GLP VT ++A +
Sbjct: 309 WVSSFYRS--------------NPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLA 354
Query: 398 KDNNLVRHLDACETMGNATAICSDKTGTLTTNRMTAVQAYVCEVQYKNIPKYEDIPEDIA 457
K +V+ L A E++ +CSDKTGTLT N+++ Y PED+
Sbjct: 355 KKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPYTVA---------GVDPEDLM 405
Query: 458 SKIVEGISVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEV 517
A K+ + + A L + K Y + L +
Sbjct: 406 ---------------LTAC--LAASRKKKGIDAIDKAFLKSL----KYYPRAKSVLSK-- 442
Query: 518 FTRVYT--FNSVRKSMSTVIPKKNG-YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQ 574
+ + F+ V K + V+ G KGA +LK +++
Sbjct: 443 YKVLQFHPFDPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEED-------HPIPEEVD 495
Query: 575 GRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVI 634
+N + A G R++ +A K E + L ++
Sbjct: 496 QA-YKNKVAEFATRGFRSLGVARKR--------------------GEGS----WEILGIM 530
Query: 635 GIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN 694
DP R + + + + + G++I+M+TGD + AR + + G+ + L
Sbjct: 531 PCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNIYNAERLGLGGGG 590
Query: 695 RRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTN 754
D G + ++ A P KY +V+ + +VA+TGDG N
Sbjct: 591 ----DMPGSEVYDFVEAA----DGFAEVFPQHKYNVVEILQQRG-----YLVAMTGDGVN 637
Query: 755 DGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQL 814
D P+LKKAD G A+ +D A+ A+DI+ +I+ A+ R ++ + ++ +++
Sbjct: 638 DAPSLKKADTGIAVE-GSSDAARSAADIVFLAPGLGAIIDALKTSRQIFHRMYAYVVYRI 696
Query: 815 TVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDLLLRKPYGRT 874
+++ I + A+ + L ++++ + D +A+LA+A + K
Sbjct: 697 ALSIHLEIFLGL-WIAILNRSLNIELVVFIAIFAD-VATLAIAYDNAPYSQTPVKW---- 750
Query: 875 KALISKTMMKNIIGQAIYQ--LVIIFGILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNT 932
+ + G ++ ++ + + G ++F
Sbjct: 751 -------NLPKLWGMSVLLGVVLAVGTWITVT---TMYAQGENGGIVQNFGNMDEVLFLQ 800
Query: 933 FVLMTLFNEINARKIHGQRNVFEGLFTNPIFYSIWVITMVSQVIIVQYGGIAFATHSLTL 992
L + R + + + + +I+++ +++ + G F ++
Sbjct: 801 ISLTENWLIFITR---ANGPFWSSIPSWQLSGAIFLVDILATCFTIW--GW-FEHSDTSI 854
Query: 993 EQWGWCLFFGVGTLVWQQIVTTVPTKRLPKIFSWGRGQPESEAAMNTRQQRAAHILWLRG 1052
F G V + + + G+ ++QR+ +
Sbjct: 855 VAVVRIWIFSFGIFCIMGGVYYILQDSV-GFDNLMHGKS----PKGNQKQRSLEDF-VVS 908
Query: 1053 LTRLQTQ 1059
L R+ TQ
Sbjct: 909 LQRVSTQ 915
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 122 bits (309), Expect = 4e-31
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 43/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
I D RP + + ++K + G+ I +++GD + + ++ + I
Sbjct: 130 SFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI-------------- 175
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
+ SP DK +++ K+ V + GDG
Sbjct: 176 -----------------Q------EYYSNLSPEDKVRIIE-----KLKQNGNKVLMIGDG 207
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND AL ADV AMG G D++K +DIIL ++ +++ +
Sbjct: 208 VNDAAALALADVSVAMG-NGVDISKNVADIILVSNDIGTLLGLI 250
Score = 33.6 bits (78), Expect = 0.31
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNRMT 432
++++ + E + I +KTGTLT
Sbjct: 15 IIKNSNVYEKIKEIDTIIFEKTGTLTYGTPI 45
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 121 bits (307), Expect = 1e-30
Identities = 54/174 (31%), Positives = 73/174 (41%), Gaps = 44/174 (25%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
VI + D +RPE EAI K + GI M+TGDN A+ +A + G+
Sbjct: 138 VIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL-------------- 183
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
D A P +K VK ++ V A+ GDG
Sbjct: 184 -----------------D------DYFAEVLPHEKAEKVK-----EVQQKY-VTAMVGDG 214
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDSI 806
ND PAL +ADVG A+G GTDVA E +DI+L ++ + V R Y
Sbjct: 215 VNDAPALAQADVGIAIG-AGTDVAVETADIVLVRNDPRDVAAIVELSRKTYSKF 267
Score = 31.3 bits (72), Expect = 1.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 403 VRHLDACETMGNATAICSDKTGTLT 427
+R A E + A+ DKTGTLT
Sbjct: 1 MRDRQAFERAKDLQAVIFDKTGTLT 25
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 121 bits (305), Expect = 2e-30
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 157 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 202
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
D V+A P K VK K+ A VVA GDG
Sbjct: 203 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 233
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 234 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 276
Score = 33.2 bits (77), Expect = 0.45
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 402 LVRHLDACETMGNATAICSDKTGTLTTNRMT 432
L+++ DA E TA+ DKTGTLT +
Sbjct: 19 LIKNADALEVAEKVTAVIFDKTGTLTKGKPE 49
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 121 bits (307), Expect = 2e-28
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 451 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 496
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
D V+A P K VK K+ A VVA GDG
Sbjct: 497 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 527
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 528 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 570
Score = 66.4 bits (163), Expect = 3e-11
Identities = 65/269 (24%), Positives = 98/269 (36%), Gaps = 78/269 (28%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILI--QSNDLKIDESSLTGESDHVKKG 227
VIR + + V ++ VGDI ++ G+ +P DG+++ +S +DES ++GE V K
Sbjct: 137 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKS 193
Query: 228 ELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDE 287
+ V T G K+ T VG TLL
Sbjct: 194 K--GDEVFGATINNTGVLKIRATRVGGE-------TLL---------------------- 222
Query: 288 ESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQ------IGY---AGSTIAILTVVIL 338
+ I + + V A +K IQ + Y +AI +
Sbjct: 223 -AQI--VKL--------------VEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIY- 264
Query: 339 ISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMMK 398
W I + F + VLVVA P LA +L + K +
Sbjct: 265 ---------------WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAE 309
Query: 399 DNNLVRHLDACETMGNATAICSDKTGTLT 427
L+++ DA E TA+ DKTGTLT
Sbjct: 310 LGILIKNADALEVAEKVTAVIFDKTGTLT 338
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 122 bits (308), Expect = 2e-28
Identities = 53/164 (32%), Positives = 77/164 (46%), Gaps = 43/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
++ +EDP++ PE I + Q++GI I M+TGD+ TA ++A GI
Sbjct: 548 LLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI-------------- 593
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
+V+A P DK +V ++ +VA+ GDG
Sbjct: 594 -----------------K------KVVAEIMPEDKSRIVS-----ELKDKGLIVAMAGDG 625
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND PAL KAD+G AMG TGTDVA E++ + L + I KA
Sbjct: 626 VNDAPALAKADIGIAMG-TGTDVAIESAGVTLLHGDLRGIAKAR 668
Score = 64.9 bits (159), Expect = 1e-10
Identities = 58/270 (21%), Positives = 102/270 (37%), Gaps = 79/270 (29%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILI--QSNDLKIDESSLTGESDHVKKG 227
+ +++ + ++ VGD+ +++ G+ +P DG + +S +DES +TGE V K
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF---VDESMVTGEPIPVAKE 286
Query: 228 ELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDE 287
V+ T GS M VG + T+L
Sbjct: 287 A--SAKVIGATINQTGSFVMKALHVGSD-------TML---------------------- 315
Query: 288 ESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQ------IGY---AGSTIAILTVVIL 338
+ I + M V A+ ++ IQ G+ A +A+L+ ++
Sbjct: 316 -ARI--VQM--------------VSDAQRSRAPIQRLADTVSGWFVPAVILVAVLSFIV- 357
Query: 339 ISQYCVKKFVIEDEEWKAI-YFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMM 397
W + + V+VL++A P L LA +S+ V K
Sbjct: 358 ---------------WALLGPQPALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGA 402
Query: 398 KDNNLVRHLDACETMGNATAICSDKTGTLT 427
+ L+++ +A E M + DKTGTLT
Sbjct: 403 QSGVLIKNAEALERMEKVNTLVVDKTGTLT 432
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 121 bits (305), Expect = 4e-28
Identities = 49/164 (29%), Positives = 76/164 (46%), Gaps = 44/164 (26%)
Query: 633 VIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKE 692
+I + D ++ A+++ +R GI + M+TGDN +A +I+ + +
Sbjct: 529 IIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL-------------- 574
Query: 693 FNRRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDG 752
D V+A P K VK K+ A VVA GDG
Sbjct: 575 -----------------D------LVIAEVLPHQKSEEVK-----KLQAKE-VVAFVGDG 605
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
ND PAL +AD+G A+G +G+DVA E+ DI+L D+ +V A+
Sbjct: 606 INDAPALAQADLGIAVG-SGSDVAVESGDIVLIRDDLRDVVAAI 648
Score = 69.9 bits (172), Expect = 3e-12
Identities = 64/275 (23%), Positives = 97/275 (35%), Gaps = 80/275 (29%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILI--QSNDLKIDESSLTGESDHVKKG 227
VIR + + V ++ VGDI ++ G+ +P DG+++ +S +DES ++GE V K
Sbjct: 215 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY---VDESMISGEPVPVLKS 271
Query: 228 ELFDPMVLSGTHVMEGSGKMVVTAVGVNSQ-AGIIFTLLGATDDEEVKQEKKDKKKKKRD 286
+ V T G K+ T VG + A I+
Sbjct: 272 K--GDEVFGATINNTGVLKIRATRVGGETLLAQIV------------------------- 304
Query: 287 EESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQ------IGY---AGSTIAILTVVI 337
K V A +K IQ + Y +AI +
Sbjct: 305 ----------------------KLVEDAMGSKPPIQRLADKVVAYFIPTVLLVAISAFIY 342
Query: 338 LISQYCVKKFVIEDEEWKAIYFREFVRFFMVGVTVLVVAVPEGLPLAVTLSLAYSVKKMM 397
W I + F + VLVVA P LA +L + K
Sbjct: 343 ----------------WYFIAHAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGA 386
Query: 398 KDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 432
+ L+++ DA E TA+ DKTGTLT +
Sbjct: 387 ELGILIKNADALEVAEKVTAVIFDKTGTLTKGKPE 421
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 86.5 bits (215), Expect = 1e-19
Identities = 30/158 (18%), Positives = 58/158 (36%), Gaps = 25/158 (15%)
Query: 487 VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYT--FNSVRKSMSTVIPKKNG-YRV 543
+ N + A+L + ++ F+ R+ MS V+ + +++
Sbjct: 32 LKNLLDTAVLEGTDEESA-------RSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQL 84
Query: 544 YTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTD 603
KGA + IL CS + NG + M + ++ V + + GLR +++A K
Sbjct: 85 VCKGALQEILNVCSQVR-HNGEIVPLDDIMLRK-IKRVTDTLNRQGLRVVAVATKYLPAR 142
Query: 604 KAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVR 641
+ + + DES+ L I D
Sbjct: 143 EGDYQR---------ADESD----LILEGYIAFLDHHH 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 79.9 bits (196), Expect = 3e-15
Identities = 93/650 (14%), Positives = 184/650 (28%), Gaps = 215/650 (33%)
Query: 138 IVVVLVTAF---------NDYSKE-------KQFRGLQNQIEGEHK-FAVIR--QNELKQ 178
I+ V AF D K ++ + G + F + Q E+ Q
Sbjct: 21 ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 179 IFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESD------------HVKK 226
FV +++ +I Y L I + + + D +V +
Sbjct: 81 KFVEEVL-----RINYKFL--MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 227 GELF----------DPMVLSGTHVMEGSGKMVVTAVGVNSQA------GIIFTL-LG--A 267
+ + P + GSGK V S IF L L
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 268 TDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTK--LAI---- 321
+ + ++ +K + + S + + + E + +L++K + L +
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 322 ---QIGYA---GSTIAILT----VVILISQYCVKKFVIEDEEWKAIYFRE----FVRFFM 367
+ A I + T V +S ++ + E +++
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-TLTPDEVKSLLLKYLD 312
Query: 368 VGVTVLVVAVPEGLPLAVTLSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLT 427
L V P +++ +A S++ + + +H++ C+ + + L
Sbjct: 313 CRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVN-CDKLTTIIESSLNV---LE 367
Query: 428 TNRMTAVQAYVCEVQYK---------NIP-----------KYEDIPEDIASK-----IVE 462
+ + +IP D + +K +VE
Sbjct: 368 PAEY---RKM-----FDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVE 418
Query: 463 G------ISVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEE 516
IS+ S Y + EN L + + + Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDH---------------YN--------- 454
Query: 517 VFTRVYTFNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCSYI-YGRNGHLEK------- 568
+ + + + P + Y Y S+I + HL+
Sbjct: 455 -IPKTFDSDDLIP------PYLDQY-FY------------SHIGH----HLKNIEHPERM 490
Query: 569 --FTK---D---MQGRLVRNVIEPMACDG--LRTIS--IAYKDFVTDKAEINQVHIEGDP 616
F D ++ ++ R+ G L T+ YK ++ D DP
Sbjct: 491 TLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDN----------DP 539
Query: 617 NWDD------------ESNIV-SHLTCLCVIGIEDPVRPEVPEAIKKCQR 653
++ E N++ S T L I + EA K+ QR
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 68.0 bits (165), Expect = 1e-11
Identities = 69/526 (13%), Positives = 145/526 (27%), Gaps = 154/526 (29%)
Query: 440 EVQYKNIPKYEDIPEDIASKIVEGISVN--SGYTSKIMAPENANELPKQVGNKTECALLG 497
E QY+ Y+DI V+ I++ E + + + L
Sbjct: 13 EHQYQ----YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS-KDAVSGTLRL 67
Query: 498 FVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTVIPKKNGYRVYTKGASEIILKKCS 557
F + K + V+ + EEV Y F + + + S +
Sbjct: 68 FWTLLSKQEEMVQKFV-EEVLRINYKF------------LMSPIKTEQRQPS---MMTRM 111
Query: 558 YIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPN 617
YI R+ RL N + A K V+ ++ +
Sbjct: 112 YIEQRD------------RL-YNDNQVFA-----------KYNVSRLQPYLKLR-QALLE 146
Query: 618 WDDESNIVSH------LTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRM------VTGDN 665
N++ T + A+ C + +M + N
Sbjct: 147 LRPAKNVLIDGVLGSGKTWV---------------ALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 666 INTARSIATK----CGIVKPGEDYLILEGKEFNRRVRDNNGEVQQNL------------- 708
N+ ++ + P ++ N ++R + +Q L
Sbjct: 192 CNSPETVLEMLQKLLYQIDP--NWTSRSDHSSNIKLRIH--SIQAELRRLLKSKPYENCL 247
Query: 709 --LDKVW-PR-LRVLARSSPSDKYTLV----KGMIDSKISAGREVVAVTGDGTNDGPALK 760
L V + S L+ K + D +A +++ D +
Sbjct: 248 LVLLNVQNAKAWNAFNLSCK----ILLTTRFKQVTDFLSAATTTHISL--DHHSMTLTPD 301
Query: 761 KADVGFA--MGITGTDVAKEASDI----ILTDDNFSSIVKAVM---------WGRNVYDS 805
+ + D+ +E + SI+ + W D
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRL-------SIIAESIRDGLATWDNWKHVNCDK 354
Query: 806 ISKFLQFQLTVNVVAVIVAFIGACAV-QDS---PLKAVQMLWVNL-------IMDTLASL 854
++ ++ L V A +V S P + ++W ++ +++ L
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 855 ALATEMPT------PDLLLRKPYGRTKALISKTMMKNIIGQAIYQL 894
+L + P P + L + K + ++I+ Y +
Sbjct: 415 SLVEKQPKESTISIPSIYLEL---KVKLENEYALHRSIVDH--YNI 455
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.1 bits (145), Expect = 4e-09
Identities = 94/630 (14%), Positives = 190/630 (30%), Gaps = 223/630 (35%)
Query: 285 RDEESAIEAIDMKPVEVAEKHDEKKSV--LQAK-LTKLA--IQIGYAGSTIAILTVVILI 339
+++ + I +P E DE + L K L ++ ++ G +L +
Sbjct: 34 QEQFNKILP---EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC--- 87
Query: 340 SQYCVKKFVIEDEEWKAIYFREFVRFFMVG--VTVLVVAVPEGLPLAVTLSLAYSVKKMM 397
EF ++ G + L + + ++
Sbjct: 88 -------------------LTEFENCYLEGNDIHALAAKLLQEND-----------TTLV 117
Query: 398 KDNNLVRH-LDACETMGNATAICSD-------KTGTLTTNRMTAV---Q----AYVCEVQ 442
K L+++ + A S+ G ++ A+ Q Y E++
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGN---AQLVAIFGGQGNTDDYFEELR 174
Query: 443 --YKNIPKYEDIPEDI---ASKIVEGISVNSGYTSKIMAP--------ENANELPKQ--- 486
Y+ Y + D+ +++ + + + K+ EN + P +
Sbjct: 175 DLYQ---TYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 487 ----VGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRV--YTFNSVRKSMSTVIPKKNG 540
+ C L+G V+ + +Y V ++ +T +R +
Sbjct: 232 LSIPI----SCPLIG-VIQLA-HY---------VVTAKLLGFTPGELRSYLKGAT----- 271
Query: 541 YRVYTKG--ASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRNVIEPMACDGLR------T 592
+++G + I + S+ E F VR I + G+R
Sbjct: 272 --GHSQGLVTAVAIAETDSW--------ESFFV-----SVRKAITVLFFIGVRCYEAYPN 316
Query: 593 ISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKC- 651
S+ + D E N EG P S + L + + + +V + + K
Sbjct: 317 TSLP-PSILEDSLENN----EGVP---------SPM--LSISNLT---QEQVQDYVNKTN 357
Query: 652 ------QRAGITIRMVTGDNINTARSIATKCGIVK-PGEDYLILEGKEFN---RRVRDNN 701
++ I++ +N A+++ +V P + L G N R+ + +
Sbjct: 358 SHLPAGKQVEISL-------VNGAKNL-----VVSGPPQS---LYG--LNLTLRKAKAPS 400
Query: 702 GEVQQNLLD---KVWPRLRVLARSSP--SDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 756
G Q + K+ R L +SP S ++ + + D +
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSH-L-----LVPA-------SDLINKDLVKNN 447
Query: 757 PALKKADVGFAMGI------TGTDVAKEASDII--LTDDNFSSIVKAVMWGRNVYDSISK 808
+ D + I G+D+ + I + D V W +
Sbjct: 448 VSFNAKD----IQIPVYDTFDGSDLRVLSGSISERIVDCIIR---LPVKWETTTQFKATH 500
Query: 809 FLQF---------QLTVNV-----VAVIVA 824
L F LT V VIVA
Sbjct: 501 ILDFGPGGASGLGVLTHRNKDGTGVRVIVA 530
Score = 58.1 bits (140), Expect = 2e-08
Identities = 77/386 (19%), Positives = 122/386 (31%), Gaps = 110/386 (28%)
Query: 778 EASDIILTDDNFSSIVKAVMWGRNVYDSISKFLQFQLTVNVVAVIVAFIGACAVQDSPLK 837
E ++ DD ++ + + KFL + V+ +V D L
Sbjct: 43 EPTEGFAADDEPTTPA----------ELVGKFLGY------VSSLVEP-SKVGQFDQVLN 85
Query: 838 AV------QMLWVNLIMD--TLASLALATEMPTPDLLLR---KPYGRTKALISKTMMKNI 886
L N D LA+ L E T + + K Y + + + K
Sbjct: 86 LCLTEFENCYLEGN---DIHALAA-KLLQENDTTLVKTKELIKNYITARIMAKRPFDKKS 141
Query: 887 ---------IGQAIYQLVIIFG-----ILFFGDKLLDIPTGRGAEYGSLPTQHFTIIFNT 932
G A QLV IFG +F ++L D+ Y L T
Sbjct: 142 NSALFRAVGEGNA--QLVAIFGGQGNTDDYF-EELRDL----YQTYHVLVGDLIKFSAET 194
Query: 933 FVLMTL-FNEINARKIHGQ-RNVFEGLFTNP-------IFYSIWVITMVSQVIIVQYGGI 983
L L ++A K+ Q N+ E L NP SI +S +I G I
Sbjct: 195 --LSELIRTTLDAEKVFTQGLNILEWL-ENPSNTPDKDYLLSI----PISCPLI---GVI 244
Query: 984 AFATHSLTLEQWGWC------LFFGVGTLVWQQIVTTVPT--------------KRLPKI 1023
A + +T + G+ G T Q +VT V K + +
Sbjct: 245 QLAHYVVTAKLLGFTPGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRKAITVL 303
Query: 1024 FSWG-RGQ---PESEAAMNTRQQ-------RAAHILWLRGLTRLQTQLRVIRAFKSNLED 1072
F G R P + + + + +L + LT+ Q Q + S+L
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYVNKTNSHLP- 361
Query: 1073 LEERRSAQSLRSARSQL---GNQRPL 1095
++ SL + L G + L
Sbjct: 362 -AGKQVEISLVNGAKNLVVSGPPQSL 386
Score = 47.0 bits (111), Expect = 4e-05
Identities = 100/672 (14%), Positives = 184/672 (27%), Gaps = 266/672 (39%)
Query: 469 GYTSKIMAPENAN---ELPKQVGNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFN 525
GY S ++ P ++ + E L G + + L +E T +
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-----GNDIHALAAKLLQENDTTLVKTK 120
Query: 526 SV-------RKSMSTVIPKKNG---YRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQG 575
+ R KK+ +R +G ++++ I+G G QG
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA-----IFG--G---------QG 164
Query: 576 RLVRNVIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDESNIVSHLTCLCVIG 635
N + + LR + Y V D I+ L+ L
Sbjct: 165 ----NTDDYF--EELRDLYQTYHVLVGD-------LIK---------FSAETLSELI--- 199
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI-------L 688
+K G+ I + + P +DYL+ L
Sbjct: 200 -------RTTLDAEKVFTQGLNILEW----LENPSN--------TPDKDYLLSIPISCPL 240
Query: 689 EGKEFNRRVRDNNGEVQQNLLDKVWPRLRVLARS---SPSDKYTLVKGMIDSKISAGREV 745
G +Q L V A+ +P + + +KG
Sbjct: 241 ------------IGVIQ--LA-----HYVVTAKLLGFTPGELRSYLKG------------ 269
Query: 746 VAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVYDS 805
TG + +T +A +D + ++F + S
Sbjct: 270 --ATGHS---------QGL-----VTAVAIA--ETD---SWESF-------------FVS 295
Query: 806 ISKFLQFQLTVNVVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLASLALATEMPTPDL 865
+ K + ++ FIG + P + L +++ D SL +P+P
Sbjct: 296 VRKAIT----------VLFFIGVRCYEAYPNTS---LPPSILED---SLENNEGVPSP-- 337
Query: 866 LLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFFGDKLLDIPTGRGAEYGSLPT-Q 924
M +I Q+ ++ LP +
Sbjct: 338 -----------------MLSISNLTQEQV----------QDYVN------KTNSHLPAGK 364
Query: 925 HFTI-IFNT---FVL----MTL--FNEINARKI------------HGQRN-VFEGLFTNP 961
I + N V+ +L N + RK +R F F P
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLN-LTLRKAKAPSGLDQSRIPFSERKLKFSNRF-LP 422
Query: 962 I---FYSIWVITMVSQVII-VQYGGIAFATHSLTLEQWGWCLFFGVGTLVWQQIVTTVPT 1017
+ F+S ++ + + ++F + + + F G + + ++
Sbjct: 423 VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGS---DLRVLSGSISE 477
Query: 1018 KRLPKIFS----WGRGQPESEAAMNTRQQRAAHIL--------WLRGLTRLQTQ---LRV 1062
+ + I W E +A HIL L LT +RV
Sbjct: 478 RIVDCIIRLPVKW-------ETTTQF---KATHILDFGPGGASGLGVLTHRNKDGTGVRV 527
Query: 1063 IRA--FKSNLED 1072
I A N +D
Sbjct: 528 IVAGTLDINPDD 539
Score = 45.4 bits (107), Expect = 1e-04
Identities = 53/328 (16%), Positives = 85/328 (25%), Gaps = 128/328 (39%)
Query: 42 ICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAA 101
K L +P E + H + + + I S WE+ + +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-------WESFFVSVRKAITV-- 302
Query: 102 LVSLGLSFY--HPGGESEHDNEETKYEWIEGAA--ILVSVI------VVVLVTAFNDYSK 151
L +G+ Y +P E E EG +L S+ V V N +
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPML-SISNLTQEQVQDYVNKTNSHLP 361
Query: 152 E------------KQF---------RGLQNQIEGEHKFAVIRQNEL-----KQIFVG--- 182
K GL + + + Q+ + K F
Sbjct: 362 AGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL 421
Query: 183 ---------------DIVVGDICQIKYGDLLPADGILIQSNDLKI------DESSLTGES 221
D++ D L + + + D++I D S L S
Sbjct: 422 PVASPFHSHLLVPASDLINKD---------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLS 472
Query: 222 D--------------------------HVKKGEL-FDPMVLSG----TH-VMEGSGKMVV 249
H+ L F P SG TH +G+G V+
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHI----LDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 250 TAVGVNSQAGIIFTLLGATDDEEV--KQ 275
A L D++ KQ
Sbjct: 529 VA-----------GTLDINPDDDYGFKQ 545
Score = 42.0 bits (98), Expect = 0.001
Identities = 43/334 (12%), Positives = 91/334 (27%), Gaps = 103/334 (30%)
Query: 220 ESDHVKKGELFDPMVLSGTHVMEGSGKMVVTAVGVNSQAGIIFTLLGATDDEEVKQ---- 275
S + ++++ H + G ++ V N I G + +++
Sbjct: 1638 TSKAAQ--DVWNRA---DNHFKDTYGFSILDIVINNPVNLTI--HFGGEKGKRIRENYSA 1690
Query: 276 -EKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQIGYAGSTIAILT 334
+ K E + I+ + ++ +L T+ Q A+
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK--GLL--SATQFT-QP-------ALTL 1738
Query: 335 VVILISQYCVKKFVIEDEEWKAIYFREFVRFFM---VG-VTVLVVAVPEGLPLAVTLSLA 390
+ F E+ K+ F +G L ++ + + + + +
Sbjct: 1739 MEKAA-------F----EDLKSKGLIPADATFAGHSLGEYAALA-SLADVMSIESLVEV- 1785
Query: 391 YSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTN-RMTAVQAYVCEVQYKNIPK- 448
V R G + + +N M A+ P
Sbjct: 1786 --VFY--------R--------GMTMQVAVPRDELGRSNYGMIAIN-----------PGR 1816
Query: 449 -YEDIPEDIASKIVEGISVNSGYTSKIMAPENANELPKQVGNKTECALLGFVVAIGKNYQ 507
++ +VE + +G ++ N N +Q V A G
Sbjct: 1817 VAASFSQEALQYVVERVGKRTG---WLVEIVNYNVENQQY-----------VAA-GDL-- 1859
Query: 508 TVRDDLPEEVFTRVYTFNSVRK--------SMST 533
L + T V F ++K S+S
Sbjct: 1860 ---RAL--DTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 39.3 bits (91), Expect = 0.009
Identities = 36/159 (22%), Positives = 53/159 (33%), Gaps = 43/159 (27%)
Query: 848 MDTLASLALA----TEMPTPDLLLRKPYGRTKALISKTMMKNIIGQAIYQLVIIFGILFF 903
MD + A D + YG S + +I+ L I FG
Sbjct: 1633 MDLYKTSKAAQDVWNRA---DNHFKDTYG-----FS---ILDIVINNPVNLTIHFG---- 1677
Query: 904 GDKLLDIPTGRGAEYGSLPTQHFTIIFNTFVLMTLFNEINARKIHGQRNVFEG----L-- 957
G+K I R Y ++ + TI+ +F EIN H F L
Sbjct: 1678 GEKGKRI---R-ENYSAMIFE--TIVDGKLKTEKIFKEIN---EHSTSYTFRSEKGLLSA 1728
Query: 958 --FTNP-IF---YSIWVITMVSQVIIVQYGGIAFATHSL 990
FT P + + + + S+ +I FA HSL
Sbjct: 1729 TQFTQPALTLMEKAAFED-LKSKGLIPA--DATFAGHSL 1764
Score = 38.9 bits (90), Expect = 0.011
Identities = 80/429 (18%), Positives = 136/429 (31%), Gaps = 131/429 (30%)
Query: 27 REGIAKINEY---GG-------VPEICKKLYTSPN-----------EGLGGSQTDLEHRR 65
EG A++ GG E+ + LY + + E L
Sbjct: 150 GEGNAQL--VAIFGGQGNTDDYFEEL-RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 66 EVF--GSNII-----P-PKPSKTFLQLVWEALQDVT--LIILE-----IAALVSLGLSFY 110
+VF G NI+ P P K +L ++ LI + + LG +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYL-----LSIPISCPLIGVIQLAHYVVTAKLLG---F 258
Query: 111 HPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAV 170
PG + ++GA +V + A D S E F V
Sbjct: 259 TPGELRSY---------LKGATGHSQGLVTAVAIAETD-SWE--------------SFFV 294
Query: 171 IRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDES------SLTGES--- 221
+ + +F +G C Y + IL S L+ +E S++ +
Sbjct: 295 SVRKAITVLF----FIGVRCYEAYPNTSLPPSILEDS--LENNEGVPSPMLSISNLTQEQ 348
Query: 222 --DHVKKGELFDPMVLSGTHV----MEGSGKMVVTAVG-VNSQAGIIFTLLGATDDEEVK 274
D+V K P +G V + G+ +VV+ G S G+ TL A +
Sbjct: 349 VQDYVNKTNSHLP---AGKQVEISLVNGAKNLVVS--GPPQSLYGLNLTLRKAKAPSGLD 403
Query: 275 QEKK--DKKKKKRDEE---------SAIEAIDMKPVEVAEKHDEKKSVLQAKLTKLAIQI 323
Q + ++K K S + + P D K+ + + I +
Sbjct: 404 QSRIPFSERKLKFSNRFLPVASPFHSHL----LVPASDLINKDLVKNNVSFNAKDIQIPV 459
Query: 324 GYA---GSTIAILTVVI---LISQYCVKKFVIEDEEW-KAIYFRE--FVRF---FMVGVT 371
Y GS + +L+ I ++ V +W F+ + F G+
Sbjct: 460 -YDTFDGSDLRVLSGSISERIVDCIIRLP-V----KWETTTQFKATHILDFGPGGASGLG 513
Query: 372 VLVVAVPEG 380
VL +G
Sbjct: 514 VLTHRNKDG 522
Score = 38.5 bits (89), Expect = 0.015
Identities = 67/426 (15%), Positives = 119/426 (27%), Gaps = 146/426 (34%)
Query: 374 VVAVPEGLPLAVTLSLA-YSVKKMMKDNNLVRHLDACETMGNATAICSDKTGTLTTNRMT 432
++++P PL + LA Y V + +G T +
Sbjct: 231 LLSIPISCPLIGVIQLAHYVV--------------TAKLLGFTPGELRSYLKGATGHSQG 276
Query: 433 AVQAYVCEVQYKNIPKYEDIPEDIASKIVE-----GISVNSGYTSKIMAPENANELPKQV 487
V A +E K + G+ Y + + P + +
Sbjct: 277 LVTAVAIAET----DSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED-SLEN 330
Query: 488 GNKTECALLGFVVAIGKNYQTVRDDLPEEVFTRVYTFNSVRKSMSTV-IPKKNGYR--VY 544
+L + + E+V V NS + V I NG + V
Sbjct: 331 NEGVPSPMLS-----------ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV 379
Query: 545 TKGASEIILKKCSYIYGRNGHLEKFTKDM---QGRLVRNVIEPMACDGLRTISIAYKDF- 600
+ G + +YG N L K Q R+ P + R + + + F
Sbjct: 380 S-GPPQ-------SLYGLNLTLRKAKAPSGLDQSRI------PFS---ERKLKFSNR-FL 421
Query: 601 -VTDKAEINQV--HIEGDPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGIT 657
V H SHL L P + + + + ++
Sbjct: 422 PVA-------SPFH--------------SHL--L------VPASDLINKDL---VKNNVS 449
Query: 658 IRMVTGDNINTARSIATKCGI-VKPGEDYLILEGKEFNRRVRDNNGEVQQNLLDKV---- 712
A I V Y +G + +R +G + + ++D +
Sbjct: 450 FN-------------AKDIQIPV-----YDTFDGSD----LRVLSGSISERIVDCIIRLP 487
Query: 713 --WPRLRVLARSS------PSDKYTLVKGMIDSKISAG---REVVAVTGDGT-NDGPALK 760
W +++ P L G++ + G R +VA GT + P
Sbjct: 488 VKWETT-TQFKATHILDFGPGGASGL--GVLTHRNKDGTGVRVIVA----GTLDINPD-- 538
Query: 761 KADVGF 766
D GF
Sbjct: 539 -DDYGF 543
Score = 38.5 bits (89), Expect = 0.015
Identities = 112/685 (16%), Positives = 185/685 (27%), Gaps = 257/685 (37%)
Query: 8 PTQYGITLRQLRE-----LMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLE 62
PT QL+E L E EG A +E E+ K LG
Sbjct: 23 PTASFFIASQLQEQFNKILPEP--TEGFAADDEPTTPAELVGKF-------LG------- 66
Query: 63 HRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIIL---EIAALV-SLGLSFYHPGGESEH 118
+ S+++ P F Q++ L + L +I AL L E+
Sbjct: 67 -----YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL---------LQEN 112
Query: 119 DNEETK-YEWIEG--AAILVSVIVVVLVTAFNDYSKEKQFRGLQNQIEGEHKFAVI--RQ 173
D K E I+ A ++ F+ S FR + EG + I Q
Sbjct: 113 DTTLVKTKELIKNYITA------RIMAKRPFDKKSNSALFRAVG---EGNAQLVAIFGGQ 163
Query: 174 -------NELKQIF------VGDIV--VGDICQIKYGDLLPADGILIQSNDLK--IDESS 216
EL+ ++ VGD++ + L A+ + Q ++ ++ S
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 217 LTGESD------------------H---------VKKGELFDPMVLSGTHVMEGSGKMVV 249
T + D H GEL L G G + +V
Sbjct: 224 NTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRS--YLKGA---TGHSQGLV 278
Query: 250 TAVGVNSQAGIIFTLLGATDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKK 309
TAV + ++ ES ++
Sbjct: 279 TAVAI-AETD--------------------------SWESFFVSVR-------------- 297
Query: 310 SVLQAKLTKLAIQIGYAG-STIAILTVVILISQYCVKKFVIEDEEWKAIYFREFVRFFMV 368
K + IG ++ I + ++
Sbjct: 298 -----KAITVLFFIGVRCYEAYPNTSLPPSILEDSLE----------------------N 330
Query: 369 GVTVLVVAVPEGLP---LAVT-LSLAYSVKKMMKDNNLVRHLDACETMGNATAICSDKTG 424
EG+P L+++ L+ V+ + N HL A G I
Sbjct: 331 N---------EGVPSPMLSISNLTQE-QVQDYVNKTN--SHLPA----GKQVEI------ 368
Query: 425 TLTTNRMTAV--------QAYVCEVQYKNIPKYED---IPEDIAS--KIVEGIS---VNS 468
+L V ++ P D IP S K+ V S
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP---FSERKLKFSNRFLPVAS 425
Query: 469 GYTSKIMAPENANELPKQVGNKTECALLGFVVAI-------GKNYQTVRDDLPEEVFTRV 521
+ S ++ P A++L + K + + I G + + + + E +
Sbjct: 426 PFHSHLLVP--ASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV--- 480
Query: 522 YTFNSVRKSMSTVIPKKNGYRVY-----TKGASEIILKKCSYIYGRNGH--LEKFTKDM- 573
+P V A+ I+ +G G L T
Sbjct: 481 --------DCIIRLP------VKWETTTQFKATHILD------FGPGGASGLGVLTHRNK 520
Query: 574 QGRLVRNVIEPMACDGLRTISIAYK 598
G VR VI D +K
Sbjct: 521 DGTGVR-VIVAGTLDINPDDDYGFK 544
Score = 36.2 bits (83), Expect = 0.086
Identities = 55/285 (19%), Positives = 86/285 (30%), Gaps = 108/285 (37%)
Query: 10 QYGITLRQL-----RELMEVRGREGIAKINE-YGGVPEICKKLYTSPNEGLGGSQTDLEH 63
YG ++ + L G E +I E Y + ++ + +G ++ +
Sbjct: 1656 TYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM------IFETIVDGKLKTEKIFKE 1709
Query: 64 RREVFGSNII-PPKP--SKT-FLQ----LV----WEALQDVTLIIL----------EIAA 101
E S K S T F Q L+ +E L+ LI E AA
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Query: 102 LVSLG--LSFYHPGGESEHDNEETKYEWIEGAAILVSVIVVVLVTAFNDYSKEKQFRG-- 157
L SL +S E +V +RG
Sbjct: 1770 LASLADVMSI-------------------ESLVEVVF------------------YRGMT 1792
Query: 158 LQNQIE----GEHKFAVIRQN----------ELKQIFVGDIV--VGDICQI--------K 193
+Q + G + +I N E Q V + G + +I +
Sbjct: 1793 MQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
Query: 194 Y---GDL--L-PADGILIQSNDLKIDESSLTGESDHVK--KGELF 230
Y GDL L +L KID L +S ++ +G LF
Sbjct: 1853 YVAAGDLRALDTVTNVLNFIKLQKIDIIELQ-KSLSLEEVEGHLF 1896
Score = 32.7 bits (74), Expect = 1.0
Identities = 47/305 (15%), Positives = 91/305 (29%), Gaps = 106/305 (34%)
Query: 690 GKEFNRRVRDNNGEVQQNLLDKVWPR------------LRVLARSSPSDKYTLVKGMIDS 737
G + + Q VW R + + ++P + G
Sbjct: 1632 GMDL----YKTSKAAQ-----DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGK 1682
Query: 738 KISAGRE-VVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
+I RE A+ + DG K + F ++ + ++ +
Sbjct: 1683 RI---RENYSAMIFETIVDGKL--KTEKIFK------EINEHSTSYTFRSEK-------- 1723
Query: 797 MWGRNVYDSISKFLQFQLTVN----VVAVIVAFIGACAVQDSPLKAVQMLWVNLIMDTLA 852
L T + + A A +D LK+ ++ + T A
Sbjct: 1724 -----------GLLS--ATQFTQPALTLMEKA-----AFED--LKSKGLIPAD---ATFA 1760
Query: 853 --SL----ALATE---MPTPDL--LLRKPYGRTKALISKTMMKNIIGQAIYQLVII---- 897
SL ALA+ M L ++ R + + ++ +G++ Y ++ I
Sbjct: 1761 GHSLGEYAALASLADVMSIESLVEVVFY---RGMT-MQVAVPRDELGRSNYGMIAINPGR 1816
Query: 898 FGILFFGDKLLDIPTGRGAEYGSLPTQHFTII-FNT----FV----------LMTLFNEI 942
F + L + G G L I+ +N +V + + N I
Sbjct: 1817 VAASFSQEALQYVVERVGKRTGWL----VEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872
Query: 943 NARKI 947
+KI
Sbjct: 1873 KLQKI 1877
Score = 29.6 bits (66), Expect = 7.1
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 14/63 (22%)
Query: 1060 LRVI-RAFKSNLEDLEERRSAQSLRSARSQLGNQRPLSDITY---ID-----EDPIKTPN 1110
LR + + + + DL + SA++L S+L ++ + ++ E+P TP+
Sbjct: 173 LRDLYQTYHVLVGDLIKF-SAETL----SELIRTTLDAEKVFTQGLNILEWLENPSNTPD 227
Query: 1111 EHY 1113
+ Y
Sbjct: 228 KDY 230
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB,
actuator, transport protein; 1.65A {Archaeoglobus
fulgidus} PDB: 2voy_F
Length = 113
Score = 52.5 bits (127), Expect = 2e-08
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 170 VIRQNELKQIFVGDIVVGDICQIKYGDLLPADGILIQSNDLKIDESSLTGESDHVKKGEL 229
VIR + + V ++ VGDI ++ G+ +P DG++++ +DES ++GE V K +
Sbjct: 16 VIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKSK- 73
Query: 230 FDPMVLSGTHVMEGSGKMVVTAVG 253
V T G K+ T VG
Sbjct: 74 -GDEVFGATINNTGVLKIRATRVG 96
>2kne_B CAM, ATPase, Ca++ transporting, plasma membrane 4; protein/peptide,
calcium pump, calmodulin, acetylation, calcium,
isopeptide bond, methylation; NMR {Homo sapiens}
Length = 28
Score = 46.6 bits (110), Expect = 3e-07
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 1043 RAAHILWLRGLTRLQTQLRVIRAFKSN 1069
R ILW RGL R+QTQ++V++AF S+
Sbjct: 2 RRGQILWFRGLNRIQTQIKVVKAFHSS 28
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 47.8 bits (114), Expect = 5e-06
Identities = 24/131 (18%), Positives = 48/131 (36%), Gaps = 6/131 (4%)
Query: 640 VRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNRR 696
+ + E I IR + + ++ G D+ + LEG R
Sbjct: 60 LPSSLKEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDR 119
Query: 697 VRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTNDG 756
+ N+ + + WP + + S++ K + ++S + + + GD D
Sbjct: 120 IYCNHASFDNDYIHIDWP---HSCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDV 176
Query: 757 PALKKADVGFA 767
A K +D+ FA
Sbjct: 177 EAAKLSDLCFA 187
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative
splicing, ATP-binding, cell membrane, cytoplasm, disease
mutation; NMR {Homo sapiens}
Length = 124
Score = 45.6 bits (109), Expect = 7e-06
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 177 KQIFVGDIVVGDICQIKYGDLLPADGILI--QSNDLKIDESSLTGESDHVKKGELFDPMV 234
+Q+ V + GDI ++ G P DG +I S +DES +TGE+ V K V
Sbjct: 35 EQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM---VDESLITGEAMPVAKKP--GSTV 89
Query: 235 LSGTHVMEGSGKMVVTAVG 253
++G+ GS + T VG
Sbjct: 90 IAGSINQNGSLLICATHVG 108
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 42.1 bits (100), Expect = 5e-04
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E++ + GD ND P + TD K SD + +D +
Sbjct: 171 EILVI-GDSNNDMPMFQLPVRKACPA-NATDNIKAVSDFV-SDYS 212
>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site,
enzyme function initiativ; 2.27A {Salmonella enterica
subsp}
Length = 317
Score = 40.5 bits (95), Expect = 0.002
Identities = 25/159 (15%), Positives = 52/159 (32%), Gaps = 33/159 (20%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
+ P + + + G +++G + + + + DY +E
Sbjct: 179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQL-----DYAFSNTVE------ 227
Query: 696 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 753
+RDN + +++ ++K + + A ++A GDG
Sbjct: 228 -IRDNVLTDNITLPIMNA-------------ANKKQTLVDLAARLNIATENIIAC-GDGA 272
Query: 754 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
ND P L+ A G A V +E + F +
Sbjct: 273 NDLPMLEHAGTGIAWK--AKPVVREKIHHQINYHGFELL 309
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI,
protein structure initiative; 2.70A {Plasmodium vivax}
SCOP: c.108.1.10
Length = 301
Score = 40.3 bits (95), Expect = 0.002
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAV 796
+V+ V GD ND L FA+ TD AK + +L + V +
Sbjct: 242 QVLVV-GDAENDIAMLSNFKYSFAVA-NATDSAKSHAKCVLPVSHREGAVAYL 292
Score = 30.3 bits (69), Expect = 3.1
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 7/66 (10%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGED--YLILEGKEFN-RRVR 698
E +AIK+ G + + TG + S + + K + N V
Sbjct: 48 SENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVY----INGTIVY 103
Query: 699 DNNGEV 704
D G
Sbjct: 104 DQIGYT 109
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 39.8 bits (94), Expect = 0.003
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
EV V GDG ND A K A+ + KE +D + T
Sbjct: 171 EVAHV-GDGENDLDAFKVVGYKVAVA-QAPKILKENADYV-TKKE 212
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 39.0 bits (92), Expect = 0.005
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
+V A GDG ND L G AMG + K +D + T
Sbjct: 201 DVYAF-GDGLNDIEMLSFVGTGVAMGN-AHEEVKRVADFV-TKPV 242
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural
genomics, protein structure initiative; 2.90A
{Lactobacillus brevis}
Length = 279
Score = 38.7 bits (91), Expect = 0.007
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
+V+ + GD ND +K A +G AMG D KEA+ + T N
Sbjct: 215 DVMTL-GDQGNDLTMIKYAGLGVAMG-NAIDEVKEAAQAV-TLTN 256
Score = 32.5 bits (75), Expect = 0.63
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 7/72 (9%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 700
+A++ + GI + + TG + + I Y I FN +
Sbjct: 25 QATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDD-QYAIT----FNGSVAQTI 79
Query: 701 NGEV-QQNLLDK 711
+G+V + L
Sbjct: 80 SGKVLTNHSLTY 91
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 38.8 bits (91), Expect = 0.008
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E AV GD ND L+ A G AMG + K +D + T N
Sbjct: 234 ETAAV-GDSLNDKSMLEAAGKGVAMG-NAREDIKSIADAV-TLTN 275
Score = 33.8 bits (78), Expect = 0.27
Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 700
E A+++ QR GI + + TG SI GI + ++I N + D
Sbjct: 24 LENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGI----KTWVIS----ANGAVIHDP 75
Query: 701 NGEV-QQNLLDK 711
G + +DK
Sbjct: 76 EGRLYHHETIDK 87
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 38.3 bits (90), Expect = 0.008
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E ++ GDG ND L+ A +G AMG + K A+D + T
Sbjct: 205 ETMSF-GDGGNDISMLRHAAIGVAMGQ-AKEDVKAAADYV-TAPI 246
>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine
phosphatase, protein structure initiative, structural
genomics; 2.40A {Helicobacter pylori}
Length = 217
Score = 38.0 bits (89), Expect = 0.008
Identities = 22/159 (13%), Positives = 46/159 (28%), Gaps = 33/159 (20%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
P+ E + + + +G + D L
Sbjct: 75 PLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHL-----DAAFSNTLI------ 123
Query: 696 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 753
V ++ NG V +++ K ++ + + + V GDG
Sbjct: 124 -VENDALNGLVTGHMMFS-------------HSKGEMLLVLQRLLNISKTNTLVV-GDGA 168
Query: 754 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
ND K A + A +V K+ + + + + + I
Sbjct: 169 NDLSMFKHAHIKIAFN--AKEVLKQHATHCINEPDLALI 205
>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid
dehalogenase like hydrolase, mannosylglycerate,
cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus
horikoshii} PDB: 1wzc_A
Length = 249
Score = 38.3 bits (88), Expect = 0.010
Identities = 24/77 (31%), Positives = 29/77 (37%), Gaps = 2/77 (2%)
Query: 711 KVWPRLRVLARSSPSDKYTLVKGMIDS-KISAGREVVAVTGDGTNDGPALKKADVGFAMG 769
KV R SDK K ++D K E AV GD ND P + D F +G
Sbjct: 164 KVTMGSRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAV-GDSYNDFPMFEVVDKVFIVG 222
Query: 770 ITGTDVAKEASDIILTD 786
A+ S II
Sbjct: 223 SLKHKKAQNVSSIIDVL 239
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 37.9 bits (89), Expect = 0.011
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E+V GD ND ++A + AM + KEASDI+ T N
Sbjct: 208 EIVVF-GDNENDLFMFEEAGLRVAME-NAIEKVKEASDIV-TLTN 249
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 37.6 bits (88), Expect = 0.014
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E + GDG ND + +DV AM K+ + I +D
Sbjct: 218 ETICF-GDGQNDIVMFQASDVTIAMK-NSHQQLKDIATSI-CEDI 259
>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A
{Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A*
2hf2_A
Length = 271
Score = 37.1 bits (87), Expect = 0.021
Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
VVA+ GD ND LK A FAMG + K+ + TDDN
Sbjct: 209 NVVAI-GDSGNDAEMLKMARYSFAMG-NAAENIKQIARYA-TDDN 250
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 37.2 bits (87), Expect = 0.023
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
EV GD ND L+ A + +A+ A+
Sbjct: 229 EVCCF-GDNLNDIEMLQNAGISYAVS-NARQEVIAAAKHT-CAPY 270
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate
dehalogenase enzyme superfamily, phosphohydrol
hydrolase; 1.82A {Bacteroides thetaiotaomicron}
Length = 268
Score = 37.1 bits (87), Expect = 0.023
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E++A GDG ND P LK A +G AMG ++ + +D + TD
Sbjct: 212 EIMAC-GDGGNDIPMLKAAGIGVAMGN-ASEKVQSVADFV-TDTV 253
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha
sandwich. stucture contains A magnesium ION., PSI,
protein structure initiative; 1.40A {Escherichia coli}
SCOP: c.108.1.10
Length = 282
Score = 37.1 bits (87), Expect = 0.023
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
E++A+ GD ND ++ A VG A+ KE ++ + T N
Sbjct: 216 EIMAI-GDQENDIAMIEYAGVGVAVD-NAIPSVKEVANFV-TKSN 257
Score = 31.3 bits (72), Expect = 1.7
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI 687
P V AI + G+ + + TG + + + +PG DY I
Sbjct: 25 PAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPG-DYCI 69
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase,
enzyme function initiative, EFI, structural genomics;
1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Length = 279
Score = 37.1 bits (87), Expect = 0.025
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
EV+A+ GDG ND +K A +G AMG + K+A+D I T N
Sbjct: 215 EVIAI-GDGYNDLSMIKFAGMGVAMG-NAQEPVKKAADYI-TLTN 256
Score = 31.0 bits (71), Expect = 1.8
Identities = 7/46 (15%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI 687
E + + Q GI + + +G +A + + + G +++
Sbjct: 25 SRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFG-GFIL 69
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG,
unknown function; HET: MSE; 1.85A {Bacillus subtilis}
Length = 290
Score = 36.8 bits (86), Expect = 0.026
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
+VVA+ G +D P ++ A +G AMG K +D + T N
Sbjct: 220 DVVAI-GHQYDDLPMIELAGLGVAMG-NAVPEIKRKADWV-TRSN 261
Score = 31.0 bits (71), Expect = 2.1
Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 9/64 (14%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 700
+AI+ ++ GI + +VT + +A+ IA + + LI + + +
Sbjct: 26 QATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKL----DAKLIT----HSGAYIAEK 77
Query: 701 NGEV 704
Sbjct: 78 IDAP 81
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A
{Streptococcus mutans}
Length = 304
Score = 36.9 bits (86), Expect = 0.030
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
++A GDG ND LK A +AM K A++ N
Sbjct: 246 HLMAF-GDGGNDIEMLKLAKYSYAMA-NAPKNVKAAANYQ-AKSN 287
>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle,
B-hairpin, structural genomics, BSGC structure funded by
NIH; 1.48A {Methanocaldococcus jannaschii} SCOP:
c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*
Length = 211
Score = 35.2 bits (82), Expect = 0.076
Identities = 35/159 (22%), Positives = 58/159 (36%), Gaps = 33/159 (20%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
E IK+ + G + +V+G I K G+ DY L
Sbjct: 76 TPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGL-----DYAFANRLI------ 124
Query: 696 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 753
V+D G+V+ +L + + K +++ + + + VAV GDG
Sbjct: 125 -VKDGKLTGDVEGEVLKE-------------NAKGEILEKIAKIEGINLEDTVAV-GDGA 169
Query: 754 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
ND KKA + A + KE +DI + + I
Sbjct: 170 NDISMFKKAGLKIAFC--AKPILKEKADICIEKRDLREI 206
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 35.0 bits (81), Expect = 0.080
Identities = 25/140 (17%), Positives = 37/140 (26%), Gaps = 34/140 (24%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKE 692
I + + + ++ AG +VT N IA G+ +LI E
Sbjct: 89 IRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGV-----QHLIATDPE--- 140
Query: 693 FNRRVRDNN--GEVQQNLLD---KVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVA 747
RD G ++ KV R+ E
Sbjct: 141 ----YRDGRYTGRIEGTPSFREGKV-VRVNQWLAGMGLALGDF------------AESYF 183
Query: 748 VTGDGTNDGPALKKADVGFA 767
D ND P L+ A
Sbjct: 184 Y-SDSVNDVPLLEAVTRPIA 202
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 34.7 bits (79), Expect = 0.081
Identities = 10/51 (19%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 271 EEVK--QEKKDKKKKKRDEESAIEAIDMKPVEVAEKH-DEKKSVLQAKLTK 318
E ++ +E++ K+ ++ D S + + + E A+K +E ++ K
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWR--EKAKKDLEEWNQRQSEQVEK 133
>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural
genomics, PSI, protein STRU initiative, nysgrc; 2.30A
{Vibrio cholerae}
Length = 335
Score = 35.5 bits (82), Expect = 0.088
Identities = 25/159 (15%), Positives = 48/159 (30%), Gaps = 33/159 (20%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
P+ PE+PE + G + + +G + + + + DY LE
Sbjct: 178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSL-----DYAQSNTLE------ 226
Query: 696 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGT 753
+ G+V ++ K ++ + VAV GDG
Sbjct: 227 -IVSGKLTGQVLGEVVSA-------------QTKADILLTLAQQYDVEIHNTVAV-GDGA 271
Query: 754 NDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
ND + A +G A + + + +
Sbjct: 272 NDLVMMAAAGLGVAYH--AKPKVEAKAQTAVRFAGLGGV 308
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 35.2 bits (81), Expect = 0.11
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 12/69 (17%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKAVMWGRNVY 803
+A GD ND L+ G+ + T AK ++I TD +S G +
Sbjct: 229 RAIAF-GDSGNDVRMLQTVGNGYLLK-NATQEAKNLHNLI-TDSEYS-------KG--IT 276
Query: 804 DSISKFLQF 812
+++ K + F
Sbjct: 277 NTLKKLIGF 285
>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl,
hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB:
1l8l_A* 1l8o_A
Length = 225
Score = 34.5 bits (80), Expect = 0.13
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAM-GITGTDVAKEASDIILTD 786
+++ + GDG D A AD G K+ + +TD
Sbjct: 173 KIIMI-GDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITD 215
>1rku_A Homoserine kinase; phosphoserine phosphatase,
phosphoserine:homoserine phosphotransferase, THRH,
phosphoserine phosphoryl donor; 1.47A {Pseudomonas
aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A
Length = 206
Score = 33.8 bits (78), Expect = 0.21
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 740 SAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDD 787
S V+A GD ND L +A G V +E
Sbjct: 143 SLYYRVIAA-GDSYNDTTMLSEAHAGILFHAPEN-VIREFPQFPAVHT 188
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: EPE; 2.39A {Klebsiella pneumoniae
subsp}
Length = 285
Score = 33.3 bits (77), Expect = 0.36
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDII-LTDDN 788
+ +A GDG ND L A G M K+ + + N
Sbjct: 227 DCIAF-GDGMNDAEMLSMAGKGCIMA-NAHQRLKDLHPELEVIGSN 270
Score = 32.1 bits (74), Expect = 0.79
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 642 PEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN-RRVRDN 700
P E +K GI TG + I GI Y+I N RV D+
Sbjct: 41 PYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGI----RSYMIT----SNGARVHDS 92
Query: 701 NGEV 704
+G+
Sbjct: 93 DGQQ 96
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics,
structural genomics center for infectious disease,
hydrolas; 2.05A {Mycobacterium avium}
Length = 415
Score = 33.2 bits (76), Expect = 0.42
Identities = 31/160 (19%), Positives = 56/160 (35%), Gaps = 35/160 (21%)
Query: 639 PVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLI---LEGKEFNR 695
+ P ++ +R G +V+G +A + + DY+ LE
Sbjct: 256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELML-----DYVAANELE------ 304
Query: 696 RVRDN--NGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDS-KISAGREVVAVTGDG 752
+ D G V ++D+ + K T ++ + + VAV GDG
Sbjct: 305 -IVDGTLTGRVVGPIIDR-------------AGKATALREFAQRAGVPM-AQTVAV-GDG 348
Query: 753 TNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSI 792
ND L A +G A +E +D L+ ++
Sbjct: 349 ANDIDMLAAAGLGIAF--NAKPALREVADASLSHPYLDTV 386
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 32.8 bits (74), Expect = 0.66
Identities = 32/169 (18%), Positives = 54/169 (31%), Gaps = 15/169 (8%)
Query: 637 EDPVRP--EVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILEGKEFN 694
E +RP EV + + AG + + TG G++ E I +
Sbjct: 211 EIILRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIATASDV- 269
Query: 695 RRVRDNNGEVQQNLLDKVWPRLRVLARSSPSDKYTLVKGMIDSKISAGREVVAVTGDGTN 754
+ N Q L K P + A + I +V V GD
Sbjct: 270 --LEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIV-GDSLA 326
Query: 755 DGPALKKAD---VGFAMGITGTDVAKEAS----DIILTDDNFSSIVKAV 796
D + +K +G G+ G D A E D ++ ++ + +
Sbjct: 327 DLLSAQKIGATFIGTLTGLKGKDAAGELEAHHADYVI--NHLGELRGVL 373
>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase,
haloalkanoid acid dehalogenase-like phosphatase,
crystallographic snapshot; HET: 2M8; 1.74A {Thermus
thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A*
3zwd_A* 3zwk_A 3zup_A* 3zx5_A*
Length = 259
Score = 31.9 bits (72), Expect = 1.0
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 6/45 (13%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDN 788
V + GD ND P + D+ +G ++ T
Sbjct: 196 FAVGL-GDSLNDLPLFRAVDLAVYVG-----RGDPPEGVLATPAP 234
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 31.9 bits (72), Expect = 1.1
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMG 769
+ + GDG ND P L+ D +
Sbjct: 210 TTLGL-GDGPNDAPLLEVMDYAVIVK 234
>3etv_A Protein transport protein TIP20,linker,protein transport protein
DSL1; TIP20P-DSL1P complex, endoplasmic reticulum,
ER-golgi transport; 1.94A {Saccharomyces cerevisiae} PDB:
3etu_A
Length = 355
Score = 31.3 bits (70), Expect = 1.7
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 1050 LRGLTRLQTQLRVIRAFKSNLEDLEERRSAQSLRSARSQLGNQRPL---------SDITY 1100
L L L+T L +I+ K+NL LE SL+S R ++ N S TY
Sbjct: 68 LNILDNLKTFLNLIKEVKTNLNILELENCYYSLQSLRKKMRNNAAYLKQSFNFQQSISTY 127
Query: 1101 IDE 1103
+D
Sbjct: 128 VDT 130
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 31.0 bits (71), Expect = 1.8
Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 2/46 (4%)
Query: 744 EVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNF 789
+ + GD ND + + G + D ++
Sbjct: 180 QTLVC-GDSGNDIGLFETSARGVIVR-NAQPELLHWYDQWGDSRHY 223
Score = 29.5 bits (67), Expect = 5.6
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 638 DPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCGIVKPGEDYLILE-GKEFNRR 696
D E + +R + TG + ++AR + + G+++P DY + G E
Sbjct: 17 DQQALEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP--DYWLTAVGSE---- 70
Query: 697 VRDNNGEVQ--QNLLDKVWPR 715
+ G Q + L + W R
Sbjct: 71 IYHPEGLDQHWADYLSEHWQR 91
>3fxg_A Rhamnonate dehydratase; structural gemomics, enolase superfamily,
NYSGXRC, target 9265J, lyase, structural genomics,
PSI-2; 1.90A {Gibberella zeae ph-1} PDB: 2p0i_A
Length = 455
Score = 30.8 bits (70), Expect = 2.6
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
E+ + P+ + +RA T++ TG++ +
Sbjct: 247 WEECLSPDDTDGFALIKRAHPTVKFTTGEHEYS 279
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH,
NYSGXRC,11206A,PSI2,, structural genomics, protein
structure initiative; 1.80A {Escherichia coli k-12} PDB:
3in1_A*
Length = 325
Score = 30.3 bits (69), Expect = 3.7
Identities = 6/78 (7%), Positives = 18/78 (23%), Gaps = 14/78 (17%)
Query: 615 DPNWDDESNIVSHLTCLCVIGIEDPVRPEVPEAIKKCQRAGITIRMVTGDNINTA----- 669
D ++ ++ L + + E + + + + D I
Sbjct: 129 DFARFSQAKLL-SLASIFNS--PLLDGKALTEIFTQAKARQMI---ICADMIKPRLNETL 182
Query: 670 ---RSIATKCGIVKPGED 684
+ + P
Sbjct: 183 DDICEALSYVDYLFPNFA 200
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 29.6 bits (67), Expect = 4.9
Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 17/152 (11%)
Query: 538 KNGYRVYTKGASEIILKKCSYIYGRNGHLEKFTKDMQGRLVRN--VIEPMACDGLRT-IS 594
N Y + +E++ + + + F +++ ++ N +I P+ L I
Sbjct: 24 NNNQNKYIERINELVAYRKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHIL 83
Query: 595 IAYKDFVTDKAEINQVHIEGDPNWDDESNI----VSHLTCL-CVIGI---EDPVRPEVPE 646
+ D ++ V I G P + + + L + GI PV+ + +
Sbjct: 84 QLDPTYQRDIEKV-HVRIVGIPR---VIELRKIRSTDIGKLITIDGILVKVTPVKERIYK 139
Query: 647 AIKKCQRAGITIRMVTGDNINTARSIA--TKC 676
A K ++ + T C
Sbjct: 140 ATYKHIHPDCMQEFEWPEDEEMPEVLEMPTIC 171
>3kdr_A HK97 family phage portal protein; PS structural genomics, protein
structure initiative, midwest for structural genomics;
2.90A {Corynebacterium diphtheriae}
Length = 310
Score = 29.9 bits (67), Expect = 5.2
Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 13/118 (11%)
Query: 684 DYLILEGKEFNRRVRDNNGEVQQ--NLLDKVW----PRLRVLARSSPSDKYTLVKGMIDS 737
D L+ G RD +G ++ W +RV ++ + + G+
Sbjct: 69 DDLLFNGVACWALDRDESGTCIGAIHIPLDTWQIEENTVRVNGKAVDPMEVCIFVGIHGG 128
Query: 738 KISAGREVVAVTGDGTNDGPALKKADVGFAMGITGTDVAKEASDIILTDDNFSSIVKA 795
++ E L +A A ++ ++ L+ D+ I+
Sbjct: 129 LLTHASETFTDAR-------NLVRAAARVAQNPAALIELRQTNNAQLSPDDVDRIING 179
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 129
Score = 28.6 bits (65), Expect = 5.5
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 1051 RGLTRLQTQLRVIRAFKSNLE----DLEERRSAQSLRSARSQLGN 1091
R + RL+ ++ ++ +NL+ D E+R L+ AR++L
Sbjct: 43 RMIQRLRAEIDNVKKQCANLQNAIADAEQRGELA-LKDARNKLAE 86
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 29.2 bits (65), Expect = 6.1
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 269 DDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKK--SVLQAKLTKLAIQIGYA 326
DD+ +EKK + KK E + K + +K D+K + L + + Y
Sbjct: 143 DDKYFAREKKTRAKKTEGELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYL 202
Query: 327 GST 329
G+
Sbjct: 203 GAR 205
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 28.9 bits (64), Expect = 6.7
Identities = 9/51 (17%), Positives = 16/51 (31%)
Query: 268 TDDEEVKQEKKDKKKKKRDEESAIEAIDMKPVEVAEKHDEKKSVLQAKLTK 318
+D+ +EK K K + E K E + + + L
Sbjct: 112 FEDDYFGREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLA 162
>3sbf_A Mandelate racemase / muconate lactonizing enzyme; enolase fold,
acid sugar dehydratase, D-araninonate, isomera; HET: EPE
D8T; 1.50A {Vibrionales bacterium swat-3} PDB: 3r25_A
3dfh_A 3s47_A 3gy1_A
Length = 401
Score = 29.5 bits (67), Expect = 6.8
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
IED + P E + R+ ++ + G+ N
Sbjct: 232 IEDILPPNQTEWLDNI-RSQSSVSLGLGELFNN 263
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 29.2 bits (66), Expect = 8.0
Identities = 25/120 (20%), Positives = 46/120 (38%), Gaps = 13/120 (10%)
Query: 565 HLEKFTKDMQGRLVRN--VIEPMACDGLRTISIAYKDFVTDKAEINQVHIEGDPNWDDES 622
LE F D+ L+ + A +R I D + ++ + G N
Sbjct: 50 DLEMFDPDLADLLIEKPDDVIRAAQQAIRNI-----DRLRKNVDL-NIRFSGISNVIPLR 103
Query: 623 NIVS-HLTCL-CVIGI---EDPVRPEVPEAIKKCQRAGITIRMVTGDNINTARSIATKCG 677
+ S + V GI D +RP + +A+ +C+ + N+ T S+ ++CG
Sbjct: 104 ELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQSTNMITEPSLCSECG 163
>4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase,
mandelate racemase subgroup, enzyme function initia EFI;
1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A
Length = 400
Score = 29.1 bits (66), Expect = 8.0
Identities = 4/33 (12%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
EDP++ + ++ + A + + + +
Sbjct: 241 HEDPIKMDSLSSLTRY-AAVSPAPISASETLGS 272
>3vcn_A Mannonate dehydratase; enolase, magnesium binding site, enzyme
function initiative, lyase; 1.45A {Caulobacter
crescentus} PDB: 4fi4_A 3thu_A
Length = 425
Score = 29.1 bits (66), Expect = 8.1
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
+ED V E + R T + G+
Sbjct: 258 LEDSVPAENQAGFRLI-RQHTTTPLAVGEIFAH 289
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support,
cytosolic protein; 3.00A {Homo sapiens}
Length = 131
Score = 27.9 bits (63), Expect = 8.1
Identities = 10/45 (22%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 1051 RGLTRLQTQLRVIRAFKSNLE----DLEERRSAQSLRSARSQLGN 1091
R + L+ +L+ + K++LE + + R Q L + +G+
Sbjct: 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCMQ-LAQIQEMIGS 88
>3r4e_A Mandelate racemase/muconate lactonizing enzyme; enolase fold,
mannonate dehydratase, D-mannonate, lyase; HET: CS2;
1.65A {Novosphingobium aromaticivorans} PDB: 2qjj_A
2qjn_A* 2qjm_A*
Length = 418
Score = 29.1 bits (66), Expect = 8.4
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
+ED E EA + R + G+ NT
Sbjct: 251 LEDCTPAENQEAFRLV-RQHTVTPLAVGEIFNT 282
>3rr1_A GALD, putative D-galactonate dehydratase; enolase, magnesium
binding site, lyase; 1.95A {Ralstonia pickettii} PDB:
3rra_A
Length = 405
Score = 29.2 bits (66), Expect = 8.4
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
IE+PV E E + A + + G+ + +
Sbjct: 209 IEEPVLAEQAETYARL-AAHTHLPIAAGERMFS 240
>3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein;
enolase, dehydratase, enzyme function initiative, EFI,
lyase; 1.80A {Enterobacter SP}
Length = 422
Score = 29.1 bits (66), Expect = 8.6
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
IED + P+ +++ R + + G+ N
Sbjct: 253 IEDILPPQQSAWLEQV-RQQSCVPLALGELFNN 284
>2ox4_A Putative mandelate racemase; enolase, dehydratase, structural
genomics, protein structure initiative, PSI, nysgrc;
1.80A {Zymomonas mobilis}
Length = 403
Score = 29.1 bits (66), Expect = 9.2
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
E+ P P +K+ + I I + +G+ I +
Sbjct: 240 YEEINTPLNPRLLKEA-KKKIDIPLASGERIYS 271
>3t6c_A RSPA, putative MAND family dehydratase; enolase, mannonate
dehydratase related protein, enzyme funct intitiative,
lyase, hydro-lyases; HET: GCO; 1.60A {Pantoea ananatis}
PDB: 3tw9_A 3twa_A 3twb_A*
Length = 440
Score = 29.2 bits (66), Expect = 9.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
+EDPV PE E +K R + + G+
Sbjct: 271 LEDPVAPENTEWLKML-RQQSSTPIAMGELFVN 302
>2o56_A Putative mandelate racemase; dehydratase, structural genomics,
protein structure initiati 2; 2.00A {Salmonella
typhimurium}
Length = 407
Score = 29.2 bits (66), Expect = 9.7
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 636 IEDPVRPEVPEAIKKCQRAGITIRMVTGDNINT 668
E+PV P P +K+ + I + G+ I
Sbjct: 246 YEEPVMPLNPAQMKQV-ADKVNIPLAAGERIYW 277
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.393
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,276,425
Number of extensions: 1102545
Number of successful extensions: 2416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2308
Number of HSP's successfully gapped: 136
Length of query: 1119
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1015
Effective length of database: 3,798,009
Effective search space: 3854979135
Effective search space used: 3854979135
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.2 bits)