Query psy10302
Match_columns 125
No_of_seqs 186 out of 1079
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 23:03:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00690 Cation_ATPase_N: Cati 99.8 5E-21 1.1E-25 121.9 7.3 68 35-104 2-69 (69)
2 smart00831 Cation_ATPase_N Cat 99.8 1.3E-19 2.8E-24 113.4 6.6 62 45-108 2-63 (64)
3 KOG0204|consensus 99.7 4.3E-17 9.4E-22 142.6 11.1 103 12-117 79-181 (1034)
4 TIGR01517 ATPase-IIB_Ca plasma 99.7 4.4E-16 9.5E-21 139.2 10.2 100 7-110 14-115 (941)
5 KOG0202|consensus 99.6 7.8E-15 1.7E-19 128.5 8.8 76 36-113 6-81 (972)
6 TIGR01523 ATPase-IID_K-Na pota 99.6 9.7E-15 2.1E-19 132.0 8.1 77 35-113 8-84 (1053)
7 TIGR01522 ATPase-IIA2_Ca golgi 99.5 5.9E-14 1.3E-18 125.0 8.2 78 34-113 4-83 (884)
8 PRK15122 magnesium-transportin 99.5 1E-13 2.3E-18 123.8 9.5 75 35-112 28-102 (903)
9 PRK10517 magnesium-transportin 99.5 1.3E-13 2.8E-18 123.2 8.0 75 35-112 50-124 (902)
10 TIGR01106 ATPase-IIC_X-K sodiu 99.5 2.4E-13 5.2E-18 122.4 9.0 76 34-111 17-92 (997)
11 TIGR01524 ATPase-IIIB_Mg magne 99.4 2.2E-13 4.8E-18 121.2 8.4 76 35-113 16-91 (867)
12 TIGR01647 ATPase-IIIA_H plasma 99.2 4.1E-11 8.9E-16 105.5 6.1 58 53-113 1-58 (755)
13 COG0474 MgtA Cation transport 99.1 3.8E-10 8.2E-15 101.3 7.5 78 35-114 24-103 (917)
14 KOG0203|consensus 99.0 9.8E-10 2.1E-14 97.0 9.3 82 34-117 39-120 (1019)
15 KOG0205|consensus 98.7 2.4E-08 5.2E-13 86.8 6.2 77 35-115 19-102 (942)
16 TIGR01657 P-ATPase-V P-type AT 98.5 1.4E-07 3.1E-12 85.8 5.8 57 51-110 137-193 (1054)
17 KOG0208|consensus 87.0 0.78 1.7E-05 42.6 3.8 41 51-94 158-198 (1140)
18 PRK01122 potassium-transportin 84.4 1.2 2.6E-05 39.7 3.7 26 87-112 29-54 (679)
19 TIGR01652 ATPase-Plipid phosph 84.1 1.4 3E-05 40.9 4.1 41 68-108 1-44 (1057)
20 PRK14010 potassium-transportin 82.0 1.5 3.3E-05 39.0 3.4 26 87-112 28-53 (673)
21 TIGR01497 kdpB K+-transporting 80.3 1.7 3.7E-05 38.7 3.1 24 87-110 28-51 (675)
22 PF08006 DUF1700: Protein of u 79.7 15 0.00033 26.8 7.6 37 13-49 17-63 (181)
23 PF09925 DUF2157: Predicted me 75.7 7.2 0.00016 27.6 4.8 53 53-115 8-61 (145)
24 PF12534 DUF3733: Leucine-rich 75.6 1.8 4E-05 27.3 1.4 41 65-105 7-47 (65)
25 PF04835 Pox_A9: A9 protein co 71.4 11 0.00023 23.0 4.0 30 77-106 18-47 (54)
26 PF12911 OppC_N: N-terminal TM 68.4 12 0.00027 21.8 3.9 16 79-94 2-18 (56)
27 PF12751 Vac7: Vacuolar segreg 65.8 10 0.00022 31.7 4.2 36 76-111 293-328 (387)
28 COG4709 Predicted membrane pro 61.8 43 0.00093 25.5 6.5 62 32-108 46-109 (195)
29 PF06459 RR_TM4-6: Ryanodine R 56.8 22 0.00048 28.4 4.5 31 79-109 160-190 (274)
30 PRK10352 nickel transporter pe 55.6 58 0.0013 26.1 6.8 56 53-110 45-122 (314)
31 PF03918 CcmH: Cytochrome C bi 54.9 6.2 0.00013 28.6 1.0 59 51-114 71-130 (148)
32 TIGR02789 nickel_nikB nickel A 52.9 71 0.0015 25.3 6.9 41 53-95 45-104 (314)
33 PF12368 DUF3650: Protein of u 49.9 11 0.00023 19.9 1.2 14 52-67 14-27 (28)
34 KOG0209|consensus 49.9 26 0.00057 32.7 4.2 60 39-102 150-209 (1160)
35 PRK14758 hypothetical protein; 47.6 30 0.00065 18.0 2.6 16 90-105 7-22 (27)
36 PF06645 SPC12: Microsomal sig 46.5 35 0.00076 21.8 3.4 21 91-111 11-31 (76)
37 PF06341 DUF1056: Protein of u 45.3 57 0.0012 20.4 4.1 22 81-106 6-27 (63)
38 PF09163 Form-deh_trans: Forma 45.3 52 0.0011 19.1 3.7 37 82-118 4-40 (44)
39 PRK10914 dipeptide transporter 44.7 1E+02 0.0022 24.9 6.7 56 53-110 43-120 (339)
40 PRK13852 type IV secretion sys 44.5 35 0.00075 27.6 3.8 34 76-109 188-221 (295)
41 TIGR03147 cyt_nit_nrfF cytochr 39.0 1E+02 0.0022 21.9 5.1 49 50-103 70-119 (126)
42 PF13623 SurA_N_2: SurA N-term 38.9 36 0.00078 24.4 2.9 23 90-112 7-29 (145)
43 PRK09499 sifB secreted effecto 38.6 24 0.00052 28.4 2.0 19 76-94 20-38 (316)
44 COG4839 FtsL Protein required 37.8 99 0.0021 21.8 4.8 35 75-109 19-55 (120)
45 PRK02971 4-amino-4-deoxy-L-ara 37.0 56 0.0012 22.9 3.5 46 62-107 17-64 (129)
46 COG4062 MtrB Tetrahydromethano 36.8 1.3E+02 0.0028 20.7 5.1 40 70-109 61-100 (108)
47 PF14146 DUF4305: Domain of un 32.4 67 0.0014 18.0 2.7 20 90-109 16-35 (38)
48 COG2271 UhpC Sugar phosphate p 31.9 1.8E+02 0.0039 25.0 6.3 54 50-107 211-267 (448)
49 PLN00183 putative aquaporin NI 31.9 1.6E+02 0.0034 23.4 5.7 47 53-103 20-66 (274)
50 PF10361 DUF2434: Protein of u 31.2 51 0.0011 26.7 2.8 45 62-109 65-109 (296)
51 PRK10617 cytochrome c-type pro 30.2 1.2E+02 0.0025 23.1 4.6 14 80-93 9-22 (200)
52 PRK10633 hypothetical protein; 28.2 1.8E+02 0.0038 19.0 5.8 42 68-110 31-72 (80)
53 PTZ00016 aquaglyceroporin; Pro 27.9 82 0.0018 25.2 3.5 47 54-102 23-70 (294)
54 PRK10144 formate-dependent nit 27.7 2E+02 0.0043 20.4 5.0 46 50-100 70-116 (126)
55 PRK12907 secY preprotein trans 26.6 1.9E+02 0.0042 24.4 5.7 55 54-110 332-389 (434)
56 PF13518 HTH_28: Helix-turn-he 26.3 81 0.0017 17.5 2.5 37 37-78 13-49 (52)
57 PF06939 DUF1286: Protein of u 25.9 1.2E+02 0.0026 21.2 3.6 36 81-116 13-48 (114)
58 PF05781 MRVI1: MRVI1 protein; 25.7 1.5E+02 0.0033 26.0 4.9 19 90-108 481-499 (538)
59 TIGR01652 ATPase-Plipid phosph 24.9 1.6E+02 0.0034 27.7 5.2 42 67-108 228-269 (1057)
60 PF11431 Transport_MerF: Membr 24.0 1.1E+02 0.0024 18.0 2.7 18 92-109 2-19 (46)
61 PF04583 Baculo_p74: Baculovir 23.9 2E+02 0.0043 22.8 4.9 35 82-116 96-130 (249)
62 PHA03255 BDLF3; Provisional 23.8 1.2E+02 0.0026 23.1 3.5 26 79-105 182-207 (234)
63 PF06738 DUF1212: Protein of u 23.8 2.6E+02 0.0056 20.2 5.4 52 35-94 66-117 (193)
64 PF14164 YqzH: YqzH-like prote 23.7 1.7E+02 0.0038 18.3 3.7 29 61-89 10-38 (64)
65 PF13253 DUF4044: Protein of u 23.1 1.5E+02 0.0032 16.4 4.6 29 76-108 3-31 (35)
66 cd05026 S-100Z S-100Z: S-100Z 23.0 1E+02 0.0022 19.9 2.8 15 10-24 26-40 (93)
67 PF08019 DUF1705: Domain of un 22.7 1.1E+02 0.0023 21.8 3.0 41 78-118 90-130 (156)
68 PHA02673 ORF109 EEV glycoprote 22.7 1.7E+02 0.0036 21.7 4.0 9 79-87 29-37 (161)
69 TIGR00967 3a0501s007 preprotei 22.2 3.1E+02 0.0067 22.9 6.1 63 44-110 308-373 (410)
70 PF04834 Adeno_E3_14_5: Early 22.1 1.1E+02 0.0024 20.7 2.8 27 94-120 30-56 (97)
71 PF13956 Ibs_toxin: Toxin Ibs, 22.0 41 0.00089 16.0 0.5 12 94-105 5-16 (19)
72 PF11198 DUF2857: Protein of u 22.0 3.1E+02 0.0067 20.2 5.5 57 11-74 56-117 (180)
73 PF13625 Helicase_C_3: Helicas 22.0 68 0.0015 22.0 1.8 22 52-75 53-74 (129)
74 PF11293 DUF3094: Protein of u 21.4 2.1E+02 0.0045 17.4 5.9 35 68-108 18-52 (55)
75 PF03032 Brevenin: Brevenin/es 21.0 66 0.0014 18.8 1.3 16 94-109 7-22 (46)
76 PF12615 TraD_N: F sex factor 20.5 2.5E+02 0.0055 18.5 4.3 31 79-109 70-100 (101)
77 PF00957 Synaptobrevin: Synapt 20.2 2.4E+02 0.0052 17.8 4.1 23 84-106 61-83 (89)
78 PF14927 Neurensin: Neurensin 20.2 1.5E+02 0.0033 21.4 3.3 27 92-118 49-75 (140)
79 PF11120 DUF2636: Protein of u 20.1 1.3E+02 0.0027 18.8 2.5 17 94-110 7-23 (62)
80 PF10582 Connexin_CCC: Gap jun 20.0 1.6E+02 0.0036 18.5 3.1 19 91-109 43-61 (67)
No 1
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=99.84 E-value=5e-21 Score=121.89 Aligned_cols=68 Identities=31% Similarity=0.529 Sum_probs=65.5
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHH
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVS 104 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS 104 (125)
+..+++++++.|+|+..+||+++| |++||++||+|++++++++++|++|+++|.|||++||+++|+||
T Consensus 2 ~~~~~~~v~~~l~t~~~~GLs~~e--v~~r~~~~G~N~l~~~~~~s~~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 2 HQLSVEEVLKRLNTSSSQGLSSEE--VEERRKKYGPNELPEPKKKSLWRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp TTSSHHHHHHHHTTBTSSBBTHHH--HHHHHHHHSSSSTTTTTSSSHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCCCCCCCHHH--HHHHHHhcccccccccccCcHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 567899999999999999999998 99999999999999999999999999999999999999999997
No 2
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=99.80 E-value=1.3e-19 Score=113.38 Aligned_cols=62 Identities=29% Similarity=0.398 Sum_probs=58.6
Q ss_pred HhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 45 KLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 45 ~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
.++++.++||++++ |++||++||+|++++++++++|++|+++|.|||+++|+++|++|+++|
T Consensus 2 ~l~~~~~~GLs~~~--v~~r~~~~G~N~l~~~~~~s~~~~~l~~~~~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 2 RLQTSLESGLSSEE--AARRLERYGPNELPPPKKRSPLLRFLRQFHNPLIYILLAAAVLSALLG 63 (64)
T ss_pred CCCCCcccCCCHHH--HHHHHHHhCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 46788888999988 999999999999999999999999999999999999999999999986
No 3
>KOG0204|consensus
Probab=99.72 E-value=4.3e-17 Score=142.59 Aligned_cols=103 Identities=54% Similarity=0.929 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHhcChhhHHHHHhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhh
Q psy10302 12 GITLRQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQD 91 (125)
Q Consensus 12 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~d 91 (125)
++++++|.++++.++. ..++++++++++++.|+||+..||+.++++..+||+.||.|.+|++++++||+++|++|+|
T Consensus 79 ~i~~e~l~~i~~~~~~---~~L~~~gGv~gL~~~LKt~~~~Gi~~~~~el~~Rr~~fG~N~~p~k~~K~Fl~fvweA~qD 155 (1034)
T KOG0204|consen 79 GIGAEELVKIVKEHDL---KALNAYGGVEGLCKKLKTDPNEGISGEDDELERRRKIFGSNTYPEKPPKGFLRFVWEALQD 155 (1034)
T ss_pred ccCHHHHHHHhhccch---hhhhhccCHHHHHHHhccCcccCCCCChHHHHHHHHhcCCCCCCCCCCccHHHHHHHHhcc
Confidence 7888999999999875 5778999999999999999999999988789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCc
Q psy10302 92 VTLIILEIAALVSLGLSFYHPGGESE 117 (125)
Q Consensus 92 p~i~iLl~aaiiS~ilg~~~~~~~~~ 117 (125)
..++||++||++|+.+|.+.+++.++
T Consensus 156 ~TLiIL~vaAvvSl~lgi~~~g~~~G 181 (1034)
T KOG0204|consen 156 VTLIILMVAAVVSLGLGIYTPGIEDG 181 (1034)
T ss_pred chHHHHHHHHHHHHhhhhccCCCCcc
Confidence 99999999999999999998887664
No 4
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.66 E-value=4.4e-16 Score=139.22 Aligned_cols=100 Identities=41% Similarity=0.650 Sum_probs=90.6
Q ss_pred CCCccCCCHHHHHHHHHhcChhhHHHHHhhCCHHHHHHHhCCCCCCCCC--ccHHHHHHHHHhhCCCCCCCCCCchHHHH
Q psy10302 7 RPTQYGITLRQLRELMEVRGREGIAKINEYGGVPEICKKLYTSPNEGLG--GSQTDLEHRREVFGSNIIPPKPSKTFLQL 84 (125)
Q Consensus 7 ~~~~f~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~t~~~~GLs--~~e~~~~~R~~~yG~N~l~~~k~~s~~~~ 84 (125)
.+.+|++...++.++++..++ .+.++++++++++++.|+++.++||| ++| |++||++||+|++++++++++|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~t~~~~GLs~~~~e--v~~r~~~yG~N~l~~~~~~s~~~~ 89 (941)
T TIGR01517 14 FTDGFDVGVSILTDLTDIFKR--APIYEKLGGAEGIATKLKTDLNEGVRLSSST--LERREKVYGKNELPEKPPKSFLQI 89 (941)
T ss_pred cCCCCCCCHHHHHHhcCchhh--HHHHHHhCCHHHHHHHhCcCcccCCCCCHHH--HHHHHHHhCCCCCCCCCCCCHHHH
Confidence 467899999999998866432 25678899999999999999989999 777 999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 85 VWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 85 ~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
|++||++|++++|++++++|++++.+
T Consensus 90 ~~~~f~~~~~~~l~~~ails~~~~~~ 115 (941)
T TIGR01517 90 VWAALSDQTLILLSVAAVVSLVLGLP 115 (941)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999855
No 5
>KOG0202|consensus
Probab=99.57 E-value=7.8e-15 Score=128.48 Aligned_cols=76 Identities=25% Similarity=0.438 Sum_probs=72.6
Q ss_pred hCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCC
Q psy10302 36 YGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113 (125)
Q Consensus 36 ~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~ 113 (125)
..++++++..|.+++.+|||.+| +.+||+.||+|+++....+++|+++++||.||++.||+++|+|||+++.|.++
T Consensus 6 ~~~v~e~~~~f~t~~~~GLt~~e--v~~r~~~yG~Nel~~ee~~~~wk~vLeQF~n~Li~iLL~sA~ISfvl~~~~e~ 81 (972)
T KOG0202|consen 6 AKSVSEVLAEFGTDLEEGLTSDE--VTRRRKKYGENELPAEEGESLWKLVLEQFDNPLILILLLSAAISFVLADFDEP 81 (972)
T ss_pred cCcHHHHHHHhCcCcccCCCHHH--HHHHHHhcCCccCccccCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 36899999999999999999999 99999999999999999999999999999999999999999999999998754
No 6
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.55 E-value=9.7e-15 Score=132.03 Aligned_cols=77 Identities=21% Similarity=0.219 Sum_probs=72.7
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCC
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~ 113 (125)
+..+++++++.|+|+..+|||++| |++||++||+|++++++++++|++|++||+||++++|++||++|++++.|.++
T Consensus 8 ~~~~~~~v~~~l~t~~~~GLs~~e--a~~rl~~~G~N~l~~~~~~s~~~~~l~q~~~~~~~iL~~aails~~~~~~~~~ 84 (1053)
T TIGR01523 8 FSDIADEAAEFIGTSIPEGLTHDE--AQHRLKEVGENRLEADSGIDAKAMLLHQVCNAMCMVLIIAAAISFAMHDWIEG 84 (1053)
T ss_pred hhCCHHHHHHHhCcCcccCCCHHH--HHHHHHHcCCCCCCCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHhhHHHH
Confidence 677899999999999878999999 99999999999999999999999999999999999999999999999988653
No 7
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.49 E-value=5.9e-14 Score=124.98 Aligned_cols=78 Identities=21% Similarity=0.288 Sum_probs=72.1
Q ss_pred HhhCCHHHHHHHhCCCCCCCCC-ccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHH-hhHHHHHHHHHHHHHHHhhhcc
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLG-GSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEAL-QDVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs-~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f-~dp~i~iLl~aaiiS~ilg~~~ 111 (125)
++..+++++++.|+++..+||| ++| +++||++||+|+++.++++++|++|++|| +||++++|++++++|+++|.|.
T Consensus 4 ~~~~~~~~v~~~l~t~~~~GLs~~~e--v~~r~~~~G~N~i~~~~~~s~~~~~l~~~~~~~~~~~L~~aa~ls~~~g~~~ 81 (884)
T TIGR01522 4 YCELSVEETCSKLQTDLQNGLNSSQE--ASHRRAFHGWNEFDVEEDESLWKKFLSQFVKNPLILLLIASAVISVFMGNID 81 (884)
T ss_pred hhhCCHHHHHHHhCcCcccCCCcHHH--HHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhChHHHHHHHHHHHHHHHcchh
Confidence 3567899999999999988999 777 99999999999999999999999999999 9999999999999999999886
Q ss_pred CC
Q psy10302 112 PG 113 (125)
Q Consensus 112 ~~ 113 (125)
++
T Consensus 82 ~~ 83 (884)
T TIGR01522 82 DA 83 (884)
T ss_pred hH
Confidence 53
No 8
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.49 E-value=1e-13 Score=123.78 Aligned_cols=75 Identities=19% Similarity=0.293 Sum_probs=70.0
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
+-.+++++++.|+++. +|||++| |++||++||+|++++++++++|++|++||+||++++|++++++|++++.|..
T Consensus 28 ~~~~~~~v~~~l~~~~-~GLs~~e--a~~rl~~~G~N~l~~~~~~~~~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~ 102 (903)
T PRK15122 28 AANSLEETLANLNTHR-QGLTEED--AAERLQRYGPNEVAHEKPPHALVQLLQAFNNPFIYVLMVLAAISFFTDYWLP 102 (903)
T ss_pred HhCCHHHHHHHhCCCC-CCCCHHH--HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 5668999999999996 5999999 9999999999999999999999999999999999999999999999987754
No 9
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.46 E-value=1.3e-13 Score=123.21 Aligned_cols=75 Identities=23% Similarity=0.340 Sum_probs=69.5
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
+..+++++++.|+++.+ |||++| |++||++||+|+++.++++++|++|+++|+||++++|++++++|++++.|.+
T Consensus 50 ~~~~~~~v~~~l~~~~~-GLs~~e--a~~r~~~~G~N~l~~~~~~s~~~~~~~~~~~p~~~lL~~aa~ls~~~~~~~~ 124 (902)
T PRK10517 50 AVMPEEELWKTFDTHPE-GLNEAE--VESAREQHGENELPAQKPLPWWVHLWVCYRNPFNILLTILGAISYATEDLFA 124 (902)
T ss_pred HcCCHHHHHHHhCCCCC-CCCHHH--HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHccHHH
Confidence 35589999999999975 999998 9999999999999999999999999999999999999999999999987754
No 10
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.45 E-value=2.4e-13 Score=122.42 Aligned_cols=76 Identities=17% Similarity=0.127 Sum_probs=70.5
Q ss_pred HhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~ 111 (125)
++..+.+++++.|+|+..+|||++| |++||++||+|++++++++++|++|+++|++|++++|++++++|+++..+.
T Consensus 17 ~~~~~~~~~~~~l~t~~~~GLs~~e--~~~rl~~~G~N~l~~~~~~~~~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~ 92 (997)
T TIGR01106 17 DHKLSLDELERKYGTDLSKGLSAAR--AAEILARDGPNALTPPPTTPEWVKFCRQLFGGFSMLLWIGAILCFLAYGIQ 92 (997)
T ss_pred chhCCHHHHHHHhCcCcccCCCHHH--HHHHHHHhCCCCCCCCCCCCHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999888999998 999999999999999999999999999999999999999999998875543
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.45 E-value=2.2e-13 Score=121.21 Aligned_cols=76 Identities=21% Similarity=0.193 Sum_probs=69.9
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCC
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~ 113 (125)
+..+++++++.|+++.+ |||++| |++||++||+|++++++++++|++|+++|++|++++|++++++|++++.|.++
T Consensus 16 ~~~~~~~~~~~l~~~~~-GLs~~e--v~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~p~~~iL~~~a~ls~~~~~~~~~ 91 (867)
T TIGR01524 16 SQMGKETLLRKLGVHET-GLTNVE--VTERLAEFGPNQTVEEKKVPNLRLLIRAFNNPFIYILAMLMGVSYLTDDLEAT 91 (867)
T ss_pred HhCCHHHHHHHhCCCCC-CCCHHH--HHHHHHhcCCCcCCCCCCCCHHHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 45688999999999875 999999 99999999999999999999999999999999999999999999999877643
No 12
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.16 E-value=4.1e-11 Score=105.46 Aligned_cols=58 Identities=21% Similarity=0.277 Sum_probs=53.0
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCC
Q psy10302 53 GLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113 (125)
Q Consensus 53 GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~ 113 (125)
|||++| |++||++||+|++++++ +++|++|+++|++|++++|++++++|+++|.|.++
T Consensus 1 GLs~~e--a~~r~~~~G~N~~~~~~-~~~~~~~~~~~~~~~~~lL~~aa~~s~~~~~~~~~ 58 (755)
T TIGR01647 1 GLTSAE--AKKRLAKYGPNELPEKK-VSPLLKFLGFFWNPLSWVMEAAAIIAIALENWVDF 58 (755)
T ss_pred CcCHHH--HHHHHHhcCCCCCCCCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhhcchhhh
Confidence 899999 99999999999999854 56789999999999999999999999999988654
No 13
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.06 E-value=3.8e-10 Score=101.28 Aligned_cols=78 Identities=27% Similarity=0.443 Sum_probs=71.0
Q ss_pred hhCCHH--HHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 35 EYGGVP--EICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 35 ~~~~~~--~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
+..+++ ++...+.++..+||+++| +.+|+++||+|++++.+..++|..|+.||++|++++|++++++|++++.|.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~GLs~~e--~~~r~~~~G~N~~~~~~~~~~~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~ 101 (917)
T COG0474 24 HPLSVERNELLLELFTSPTTGLSEEE--VKRRLKKYGPNELPEEKKRSLLKKFLRQFKDPFIILLLVAALLSAFVGDWVD 101 (917)
T ss_pred cccccchhhHHHhhcCCcccCCCHHH--HHHHHhhcCCccccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 344455 888889898889999988 9999999999999999999999999999999999999999999999999976
Q ss_pred CC
Q psy10302 113 GG 114 (125)
Q Consensus 113 ~~ 114 (125)
.+
T Consensus 102 ~~ 103 (917)
T COG0474 102 AG 103 (917)
T ss_pred cC
Confidence 54
No 14
>KOG0203|consensus
Probab=99.04 E-value=9.8e-10 Score=96.99 Aligned_cols=82 Identities=20% Similarity=0.200 Sum_probs=75.3
Q ss_pred HhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCC
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPG 113 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~ 113 (125)
.|..+.+++++++.+|..+|||..+ +.+++.+.|||.+++||+.+-|.+|++|+++.+-++|+++|++|++...+...
T Consensus 39 ~H~~~~~eL~~r~~t~~~~Glt~~~--A~~~L~rdG~NaL~Ppk~t~~wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s 116 (1019)
T KOG0203|consen 39 DHKLSVDELCERYGTSVSQGLTSQE--AAEKLARDGPNALTPPKTTPEWIKFLRQLFGGFSILLWIGAILCFVAYGIQAS 116 (1019)
T ss_pred cccCCHHHHHHHhcCChhhcccHHH--HHhhhccCCCCCCCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcc
Confidence 5788999999999999999999999 99999999999999999999999999999999999999999999998776554
Q ss_pred CCCc
Q psy10302 114 GESE 117 (125)
Q Consensus 114 ~~~~ 117 (125)
-.+.
T Consensus 117 ~~~~ 120 (1019)
T KOG0203|consen 117 TEDD 120 (1019)
T ss_pred cCCC
Confidence 4433
No 15
>KOG0205|consensus
Probab=98.71 E-value=2.4e-08 Score=86.79 Aligned_cols=77 Identities=21% Similarity=0.298 Sum_probs=66.5
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh------
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS------ 108 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg------ 108 (125)
.-.+++++.+.|..+.. |||.+| +++|++.||+|++.+++. +.+.+|+.-|.+|+.+++-+||++.+.+.
T Consensus 19 ~~~p~eeVfeeL~~t~~-GLt~~E--~~eRlk~fG~NkleEkke-n~~lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~ 94 (942)
T KOG0205|consen 19 EAIPIEEVFEELLCTRE-GLTSDE--VEERLKIFGPNKLEEKKE-SKFLKFLGFMWNPLSWVMEAAAIMAIGLANGGGRP 94 (942)
T ss_pred ccCchhhhHHHHhcCCC-CCchHH--HHHHHHhhCchhhhhhhh-hHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCCCC
Confidence 44678999999988866 999999 999999999999997765 45667899999999999999999999987
Q ss_pred -hccCCCC
Q psy10302 109 -FYHPGGE 115 (125)
Q Consensus 109 -~~~~~~~ 115 (125)
+|.|+++
T Consensus 95 ~DW~DF~g 102 (942)
T KOG0205|consen 95 PDWQDFVG 102 (942)
T ss_pred cchhhhhh
Confidence 7776653
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=98.52 E-value=1.4e-07 Score=85.84 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=49.3
Q ss_pred CCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 51 NEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 51 ~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
..|||++| +++|+++||+|+++.++ +++|++|++++.+||.+++++++++.++-+.|
T Consensus 137 ~~GLs~~e--~~~r~~~yG~N~i~~~~-~s~~~ll~~~~~~p~~i~~i~~~~l~~~~~~~ 193 (1054)
T TIGR01657 137 SNGLTTGD--IAQRKAKYGKNEIEIPV-PSFLELLKEEVLHPFYVFQVFSVILWLLDEYY 193 (1054)
T ss_pred ccCCCHHH--HHHHHHhcCCCeeecCC-CCHHHHHHHHHhchHHHHHHHHHHHHHhhhhH
Confidence 35999998 99999999999999864 79999999999999999999987776654433
No 17
>KOG0208|consensus
Probab=87.03 E-value=0.78 Score=42.55 Aligned_cols=41 Identities=22% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHH
Q psy10302 51 NEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTL 94 (125)
Q Consensus 51 ~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i 94 (125)
..||+..+ +.+||.-||+|.+.-+ -++.+.+++++.-+||-
T Consensus 158 ~~gL~~~~--~~~r~~iyG~N~i~l~-ik~i~~iLv~EvL~PfY 198 (1140)
T KOG0208|consen 158 SNGLERQE--IIDRRIIYGRNVISLP-IKSISQILVKEVLNPFY 198 (1140)
T ss_pred cCCccHHH--HHhHHhhcCCceeeee-cccHHHHHHHhccchHH
Confidence 45999988 9999999999999976 44789999999888875
No 18
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=84.42 E-value=1.2 Score=39.68 Aligned_cols=26 Identities=8% Similarity=0.268 Sum_probs=23.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 87 EALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 87 ~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
.||+||++++|++++++|++++.+..
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~ 54 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPL 54 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhh
Confidence 48999999999999999999987644
No 19
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=84.12 E-value=1.4 Score=40.88 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=35.4
Q ss_pred hCCCCCCCCCCchH---HHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 68 FGSNIIPPKPSKTF---LQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 68 yG~N~l~~~k~~s~---~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
|..|.+...|-..| ++.+++||+.|.++.++++++++++..
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~ 44 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPI 44 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCC
Confidence 56799988877666 799999999999999999999998743
No 20
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=82.00 E-value=1.5 Score=39.00 Aligned_cols=26 Identities=23% Similarity=0.589 Sum_probs=23.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 87 EALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 87 ~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
.+|+||++++|++++++|++++.|.+
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~ 53 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPD 53 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhh
Confidence 37899999999999999999999865
No 21
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=80.26 E-value=1.7 Score=38.75 Aligned_cols=24 Identities=8% Similarity=0.253 Sum_probs=22.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 87 EALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 87 ~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
.||+||++++|++++++|++++.+
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~ 51 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIA 51 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999865
No 22
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=79.73 E-value=15 Score=26.79 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHhcChh----------hHHHHHhhCCHHHHHHHhCCC
Q psy10302 13 ITLRQLRELMEVRGRE----------GIAKINEYGGVPEICKKLYTS 49 (125)
Q Consensus 13 ~~~~~l~~~~~~~~~~----------~~~~~~~~~~~~~l~~~l~t~ 49 (125)
.+.+|..++++..+++ .-+..+++++|+++++.+..+
T Consensus 17 lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~ 63 (181)
T PF08006_consen 17 LPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAE 63 (181)
T ss_pred CCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 4556666665443221 122344555555555555443
No 23
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=75.71 E-value=7.2 Score=27.59 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=33.7
Q ss_pred CC-CccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCC
Q psy10302 53 GL-GGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGE 115 (125)
Q Consensus 53 GL-s~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~~ 115 (125)
|+ ++++ +++-++.|+.. +.+.+ .+....-.+-.+++++++++++-..|.+.++
T Consensus 8 GlI~~~q--~~~i~~~~~~~----~~~~~----~~~~~l~~lGall~~~gii~fvA~nW~~i~~ 61 (145)
T PF09925_consen 8 GLITPEQ--AEAILAFYGER----PSRSS----WLARILLYLGALLLGLGIILFVAANWDDIPR 61 (145)
T ss_pred CCCCHHH--HHHHHHHhhcc----ccchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHccH
Confidence 54 6666 88888888822 22222 2333344556788888899998888866543
No 24
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=75.60 E-value=1.8 Score=27.29 Aligned_cols=41 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10302 65 REVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSL 105 (125)
Q Consensus 65 ~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ 105 (125)
+++|+.|...-+.-++||..|+.-+.=.+++|.++++.+-+
T Consensus 7 ~~q~~~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql 47 (65)
T PF12534_consen 7 LQQYSENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQL 47 (65)
T ss_pred HHHHHhhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 34566666666677899999888877777777666666554
No 25
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=71.41 E-value=11 Score=22.96 Aligned_cols=30 Identities=10% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCchHHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10302 77 PSKTFLQLVWEALQDVTLIILEIAALVSLG 106 (125)
Q Consensus 77 k~~s~~~~~l~~f~dp~i~iLl~aaiiS~i 106 (125)
+++++|-.+++...+..+++++..+++++.
T Consensus 18 R~NsF~fViik~vismimylilGi~L~yis 47 (54)
T PF04835_consen 18 RPNSFWFVIIKSVISMIMYLILGIALIYIS 47 (54)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 477899999999988888888777777664
No 26
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=68.39 E-value=12 Score=21.81 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=11.4
Q ss_pred chHHHHHHHHHh-hHHH
Q psy10302 79 KTFLQLVWEALQ-DVTL 94 (125)
Q Consensus 79 ~s~~~~~l~~f~-dp~i 94 (125)
.+.|+.+|+.|+ |++.
T Consensus 2 ~s~~~~~~~~f~~nk~a 18 (56)
T PF12911_consen 2 RSPWKDAWRRFRRNKLA 18 (56)
T ss_pred CCHHHHHHHHHHhCchH
Confidence 467888888874 6654
No 27
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=65.80 E-value=10 Score=31.73 Aligned_cols=36 Identities=8% Similarity=0.115 Sum_probs=28.4
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy10302 76 KPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~ 111 (125)
...++||..|..++.-.+++||++.+++.|+++-..
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~AttK 328 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVFATTK 328 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 456889999988887777778888888888876543
No 28
>COG4709 Predicted membrane protein [Function unknown]
Probab=61.80 E-value=43 Score=25.53 Aligned_cols=62 Identities=13% Similarity=0.296 Sum_probs=28.8
Q ss_pred HHHhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCC--chHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 32 KINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPS--KTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 32 ~~~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~--~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
...++++|++++....++ .|+...+ +-+.++. .+......-.+.+.++.+-+..++++++++
T Consensus 46 I~~~LG~P~eiA~ei~s~--~~~k~~~-------------~~~~~~n~~~aii~~~~L~~~~v~i~Lpl~~~vi~~via 109 (195)
T COG4709 46 IAKDLGDPKEIAAEILSE--RGIKKEE-------------VKPTQKNVRRAIIALIGLGLLAVIIGLPLLIGVILFVIA 109 (195)
T ss_pred HHHHhCCHHHHHHHHHHH--ccchHHh-------------ccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666665554 2444332 2222222 223333334445555555555555555544
No 29
>PF06459 RR_TM4-6: Ryanodine Receptor TM 4-6; InterPro: IPR009460 The release of Ca2+ ions from intracellular stores is a key step in a wide variety of cellular functions. In striated muscle, the release of Ca2+ from the sarcoplasmic reticulum (SR) leads to muscle contraction. Ca2+ release occurs through large, high-conductance Ca2+ release channels, also known as ryanodine receptors (RyRs) because they bind the plant alkaloid ryanodine with high affinity and specificity []. This region covers TM regions 4-6 of the ryanodine receptor 1 family.; GO: 0005219 ryanodine-sensitive calcium-release channel activity, 0006874 cellular calcium ion homeostasis, 0016021 integral to membrane
Probab=56.84 E-value=22 Score=28.36 Aligned_cols=31 Identities=19% Similarity=0.329 Sum_probs=25.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 79 KTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 79 ~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
.+++..|-++|-|.=.+-|++|-+|.|||=.
T Consensus 160 ~k~lnylARNFYNlr~lALflAFaINFILLF 190 (274)
T PF06459_consen 160 TKFLNYLARNFYNLRFLALFLAFAINFILLF 190 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788889999999999999999998743
No 30
>PRK10352 nickel transporter permease NikB; Provisional
Probab=55.64 E-value=58 Score=26.08 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=34.5
Q ss_pred CCCccHHHHHHHHHhhCCCC-------------------CCCCCCchHHHHHHHHHhhHHHHHH---HHHHHHHHHhhhc
Q psy10302 53 GLGGSQTDLEHRREVFGSNI-------------------IPPKPSKTFLQLVWEALQDVTLIIL---EIAALVSLGLSFY 110 (125)
Q Consensus 53 GLs~~e~~~~~R~~~yG~N~-------------------l~~~k~~s~~~~~l~~f~dp~i~iL---l~aaiiS~ilg~~ 110 (125)
..++++ +++.|++||-|+ .+-..+.+.+..+++.+..-+.+.+ +++.++++.+|.+
T Consensus 45 ~~~~e~--~~~~~~~~Gld~p~~~qy~~~l~~~~~gd~G~S~~~g~~V~~~i~~~l~~Tl~L~~~a~~~~~~lgi~lGi~ 122 (314)
T PRK10352 45 PPTPEM--LASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFATQRPVLDDLLNFLPATLELAGAALVLILLTSVPLGIW 122 (314)
T ss_pred CCCHHH--HHHHHHHhCCCCCHHHHHHHHHHHHhCCCCCccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666 888999999886 2223456788888888876554433 2233344445544
No 31
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=54.94 E-value=6.2 Score=28.59 Aligned_cols=59 Identities=24% Similarity=0.290 Sum_probs=16.3
Q ss_pred CCCCCccHHHHH-HHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCC
Q psy10302 51 NEGLGGSQTDLE-HRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGG 114 (125)
Q Consensus 51 ~~GLs~~e~~~~-~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~ 114 (125)
..|.|++| +. .-.++||.=.+-.|+.+++-..+|- -|+++++++++++-..+.-+....
T Consensus 71 ~~G~s~~e--I~~~~v~rYG~~Vl~~Pp~~~~~~~lW~---~P~~~l~~g~~~~~~~~rr~~~~~ 130 (148)
T PF03918_consen 71 AEGKSDEE--IIDYFVERYGEFVLYEPPFKGFTWLLWL---GPFLLLLLGGALLFRRLRRWRRRA 130 (148)
T ss_dssp HHT--HHH--HHHHHHHHHTTT-EES--S------------------------------------
T ss_pred HcCCCHHH--HHHHHHHhcCcceeecCCCCccHHHHHH---HHHHHHHHHHHHHHHHHHhcccCC
Confidence 35889987 64 5678999999888877666555443 577777777777777776664433
No 32
>TIGR02789 nickel_nikB nickel ABC transporter, permease subunit NikB. This family consists of the NikB family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikC. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=52.86 E-value=71 Score=25.30 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=27.2
Q ss_pred CCCccHHHHHHHHHhhCCCC-------------------CCCCCCchHHHHHHHHHhhHHHH
Q psy10302 53 GLGGSQTDLEHRREVFGSNI-------------------IPPKPSKTFLQLVWEALQDVTLI 95 (125)
Q Consensus 53 GLs~~e~~~~~R~~~yG~N~-------------------l~~~k~~s~~~~~l~~f~dp~i~ 95 (125)
+.++++ +++.|++||-|. .+-..+++.+..+++.+..-+.+
T Consensus 45 ~~~~~~--~~~~~~~~gld~p~~~qy~~~l~~~~~gd~G~S~~~~~~V~~~i~~~l~~Tl~l 104 (314)
T TIGR02789 45 PPTDEA--IADMRHSLGLDQPLYVQYFHWLWNALHLDFGISYISDRPVLDEIARSLPATLEL 104 (314)
T ss_pred CCCHHH--HHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHhHHHHHH
Confidence 356666 888999999986 11123556777777777654443
No 33
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=49.88 E-value=11 Score=19.94 Aligned_cols=14 Identities=21% Similarity=0.413 Sum_probs=12.0
Q ss_pred CCCCccHHHHHHHHHh
Q psy10302 52 EGLGGSQTDLEHRREV 67 (125)
Q Consensus 52 ~GLs~~e~~~~~R~~~ 67 (125)
.|||.+| +++|++.
T Consensus 14 h~ls~ee--~~~RL~~ 27 (28)
T PF12368_consen 14 HGLSEEE--VAERLAA 27 (28)
T ss_pred cCCCHHH--HHHHHHc
Confidence 5999998 9999875
No 34
>KOG0209|consensus
Probab=49.87 E-value=26 Score=32.69 Aligned_cols=60 Identities=15% Similarity=0.142 Sum_probs=40.0
Q ss_pred HHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy10302 39 VPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAAL 102 (125)
Q Consensus 39 ~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aai 102 (125)
.++....+..+ +|+. ++.+++..+.+||.|+..-+.+ .|-.+|.++-..||...=+++..
T Consensus 150 ~~~~~g~~~k~--~G~~-~~~~i~~a~~~~G~N~fdi~vP-tF~eLFkE~A~aPfFVFQVFcvg 209 (1160)
T KOG0209|consen 150 TDEPFGYFQKS--TGHE-EESEIKLAKHKYGKNKFDIVVP-TFSELFKEHAVAPFFVFQVFCVG 209 (1160)
T ss_pred cCCcchhhhhc--cCcc-hHHHHHHHHHHhcCCccccCCc-cHHHHHHHhccCceeeHhHHhHH
Confidence 33444444443 4887 4435777777799999997644 68889999888887655444443
No 35
>PRK14758 hypothetical protein; Provisional
Probab=47.59 E-value=30 Score=17.98 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHH
Q psy10302 90 QDVTLIILEIAALVSL 105 (125)
Q Consensus 90 ~dp~i~iLl~aaiiS~ 105 (125)
...++++|++||++..
T Consensus 7 FEliLivlIlCalia~ 22 (27)
T PRK14758 7 FEFILIILILCALIAA 22 (27)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566778888888754
No 36
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=46.51 E-value=35 Score=21.85 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHhhhcc
Q psy10302 91 DVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 91 dp~i~iLl~aaiiS~ilg~~~ 111 (125)
..+..+|++.+++|++.|.+.
T Consensus 11 ~l~~~il~~~~iisfi~Gy~~ 31 (76)
T PF06645_consen 11 KLMQYILIISAIISFIVGYIT 31 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445567777788888777653
No 37
>PF06341 DUF1056: Protein of unknown function (DUF1056); InterPro: IPR009406 This entry is represented by Bacteriophage bIL286, Orf42. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several putative head-tail joining bacteriophage proteins.
Probab=45.34 E-value=57 Score=20.44 Aligned_cols=22 Identities=32% Similarity=0.606 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH
Q psy10302 81 FLQLVWEALQDVTLIILEIAALVSLG 106 (125)
Q Consensus 81 ~~~~~l~~f~dp~i~iLl~aaiiS~i 106 (125)
+++.+|+ .+=+++.++|++++.
T Consensus 6 ~fk~iW~----~~DIi~Fila~i~i~ 27 (63)
T PF06341_consen 6 FFKTIWK----YFDIILFILAMIFIN 27 (63)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHH
Confidence 4444444 333555555555544
No 38
>PF09163 Form-deh_trans: Formate dehydrogenase N, transmembrane; InterPro: IPR015246 The transmembrane domain of the beta subunit of formate dehydrogenase consists of a single transmembrane helix. This domain acts as a transmembrane anchor, allowing the conduction of electrons within the protein []. ; PDB: 1KQG_B 1KQF_B.
Probab=45.27 E-value=52 Score=19.11 Aligned_cols=37 Identities=8% Similarity=-0.041 Sum_probs=22.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCCcc
Q psy10302 82 LQLVWEALQDVTLIILEIAALVSLGLSFYHPGGESEH 118 (125)
Q Consensus 82 ~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~~~~~ 118 (125)
...+|+-..-|+-.+-++++++..++..+.-+.-..+
T Consensus 4 ~V~lWKg~~Kpl~~~~~~~~~~~~~~Hyi~vGPn~v~ 40 (44)
T PF09163_consen 4 SVTLWKGVLKPLGAAGMGATAAAGFFHYITVGPNRVE 40 (44)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH--B-S-
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC
Confidence 3455666666888888788777777766544443333
No 39
>PRK10914 dipeptide transporter permease DppB; Provisional
Probab=44.69 E-value=1e+02 Score=24.89 Aligned_cols=56 Identities=9% Similarity=0.024 Sum_probs=32.1
Q ss_pred CCCccHHHHHHHHHhhCCCCCC-------------------CCCCchHHHHHHHHHhhHHHHHH---HHHHHHHHHhhhc
Q psy10302 53 GLGGSQTDLEHRREVFGSNIIP-------------------PKPSKTFLQLVWEALQDVTLIIL---EIAALVSLGLSFY 110 (125)
Q Consensus 53 GLs~~e~~~~~R~~~yG~N~l~-------------------~~k~~s~~~~~l~~f~dp~i~iL---l~aaiiS~ilg~~ 110 (125)
+.++++ +++-|++||-|+-- -..+.+.+..+.+.+..-+.+.+ +++.++++.+|.+
T Consensus 43 ~~~~e~--~~~~~~~~GLd~p~~~qy~~~l~~~~~gd~G~S~~~~~pV~~~i~~~lp~Tl~L~~~a~~l~~~igi~lG~~ 120 (339)
T PRK10914 43 GISPER--HAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLELGVCAMIFAVAVGIPVGVL 120 (339)
T ss_pred CCCHHH--HHHHHHHHCCCCCHHHHHHHHHHHHhcCCCcCcCcCCCcHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366766 88888888887521 12345677777777765444333 2333344445544
No 40
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=44.51 E-value=35 Score=27.60 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=29.8
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 76 KPSKTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
++++.++...+.|+-|..+++++++++.+++++.
T Consensus 188 ~aTRrfF~~WlGQvlNYilL~vLv~av~si~~~~ 221 (295)
T PRK13852 188 DRTRDIAAKWIGQLITYGILLLLLNIVATIVILT 221 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677899999999999999999999999988764
No 41
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=39.03 E-value=1e+02 Score=21.88 Aligned_cols=49 Identities=27% Similarity=0.316 Sum_probs=32.8
Q ss_pred CCCCCCccHHHHH-HHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHH
Q psy10302 50 PNEGLGGSQTDLE-HRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALV 103 (125)
Q Consensus 50 ~~~GLs~~e~~~~-~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaii 103 (125)
...|-|++| +. --.++||.=.+-.|+.++.-..+|- -|++++++.++++
T Consensus 70 i~~G~Sd~e--I~~~~v~RYG~~Vly~Pp~~~~t~~LW~---~P~lll~~G~~~~ 119 (126)
T TIGR03147 70 VNEGKSNQQ--IIDFMTARFGDFVLYNPPFKWQTLLLWL---LPVLLLLLAFVLL 119 (126)
T ss_pred HHcCCCHHH--HHHHHHHhcCCeEEecCCCCcchHHHHH---HHHHHHHHHHHHH
Confidence 456889887 65 4677999999988776655544443 4666666555544
No 42
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=38.85 E-value=36 Score=24.40 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhccC
Q psy10302 90 QDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 90 ~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
+.+++++.+++|++.|+++.+..
T Consensus 7 r~~lLi~vIglAL~aFIv~d~~~ 29 (145)
T PF13623_consen 7 RGGLLIIVIGLALFAFIVGDFRS 29 (145)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc
Confidence 45677888899999999986544
No 43
>PRK09499 sifB secreted effector protein SifB; Provisional
Probab=38.57 E-value=24 Score=28.36 Aligned_cols=19 Identities=26% Similarity=0.707 Sum_probs=16.4
Q ss_pred CCCchHHHHHHHHHhhHHH
Q psy10302 76 KPSKTFLQLVWEALQDVTL 94 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i 94 (125)
..+.+||+++|+.++|+|.
T Consensus 20 ~T~esww~~LWEkiKdfFf 38 (316)
T PRK09499 20 ISQRSFFTLLWEKIKDFFC 38 (316)
T ss_pred chHHHHHHHHHHHHHHHhh
Confidence 4567999999999999985
No 44
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=37.78 E-value=99 Score=21.80 Aligned_cols=35 Identities=17% Similarity=0.231 Sum_probs=24.9
Q ss_pred CCCCchHHHHHHHHHh--hHHHHHHHHHHHHHHHhhh
Q psy10302 75 PKPSKTFLQLVWEALQ--DVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 75 ~~k~~s~~~~~l~~f~--dp~i~iLl~aaiiS~ilg~ 109 (125)
+++++..++.-+..|. ..++++.++++++.+.++.
T Consensus 19 ~q~~~~vl~k~~~~~t~~EKvly~~~~va~L~vai~i 55 (120)
T COG4839 19 EQPKKQVLRKKRKKFTKVEKVLYTTLAVAALVVAISI 55 (120)
T ss_pred cCccchHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788887 7778877777777766553
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=36.97 E-value=56 Score=22.87 Aligned_cols=46 Identities=9% Similarity=-0.052 Sum_probs=25.3
Q ss_pred HHHHHhhCCCCCCCCCCchHHHHHHHHHhhH--HHHHHHHHHHHHHHh
Q psy10302 62 EHRREVFGSNIIPPKPSKTFLQLVWEALQDV--TLIILEIAALVSLGL 107 (125)
Q Consensus 62 ~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp--~i~iLl~aaiiS~il 107 (125)
.|-.=|+|-+.+++.+.......++..+.+| .+++-+++.++++++
T Consensus 17 gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~ 64 (129)
T PRK02971 17 AQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLC 64 (129)
T ss_pred HHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3444556666665543333333445567788 566666666666554
No 46
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=36.85 E-value=1.3e+02 Score=20.69 Aligned_cols=40 Identities=23% Similarity=0.040 Sum_probs=30.5
Q ss_pred CCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 70 SNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 70 ~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
.|.+|-+...+...=++.++.--|++=|.+.|++.++++.
T Consensus 61 lnS~PgRegv~~~aG~~tna~yGfviGl~i~aLlAlil~~ 100 (108)
T COG4062 61 LNSFPGREGVYATAGYLTNAFYGFVIGLGIMALLALILGV 100 (108)
T ss_pred cccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777777777777777777777778888888888764
No 47
>PF14146 DUF4305: Domain of unknown function (DUF4305)
Probab=32.44 E-value=67 Score=17.97 Aligned_cols=20 Identities=25% Similarity=0.293 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHHhhh
Q psy10302 90 QDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 90 ~dp~i~iLl~aaiiS~ilg~ 109 (125)
.|.+.++|++.|.+.+..+.
T Consensus 16 w~f~t~ll~~~At~df~~~i 35 (38)
T PF14146_consen 16 WDFWTILLIAFATFDFGIAI 35 (38)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 57788999999999888764
No 48
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=31.86 E-value=1.8e+02 Score=25.01 Aligned_cols=54 Identities=19% Similarity=0.109 Sum_probs=32.1
Q ss_pred CCCCCCccHHHHHHHHHhhCCC--CCCCCCCchHHHHHHHH-HhhHHHHHHHHHHHHHHHh
Q psy10302 50 PNEGLGGSQTDLEHRREVFGSN--IIPPKPSKTFLQLVWEA-LQDVTLIILEIAALVSLGL 107 (125)
Q Consensus 50 ~~~GLs~~e~~~~~R~~~yG~N--~l~~~k~~s~~~~~l~~-f~dp~i~iLl~aaiiS~il 107 (125)
.+.||.+ +++-+..+..- +-++.++-+.|++|++- ++||.+++|.++-+.-.+.
T Consensus 211 qs~GLP~----ie~~~~d~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYiv 267 (448)
T COG2271 211 QSEGLPP----IEEYRGDPLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVV 267 (448)
T ss_pred cccCCCC----HHHhhcCchhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHH
Confidence 3459988 33444333322 11222226778777776 5899999998877665544
No 49
>PLN00183 putative aquaporin NIP7; Provisional
Probab=31.85 E-value=1.6e+02 Score=23.38 Aligned_cols=47 Identities=15% Similarity=0.377 Sum_probs=34.8
Q ss_pred CCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHH
Q psy10302 53 GLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALV 103 (125)
Q Consensus 53 GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaii 103 (125)
-|+.++ -.+|++.|| -+|--=..+.|+.++-.|.-.++++++++++.
T Consensus 20 ~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~laEfigTfllvf~~~g~~ 66 (274)
T PLN00183 20 TLNGDD--HPKRQRLFG--CLPYDMDLNPARMVLAEMVGTFILMFCVCGII 66 (274)
T ss_pred cccCCC--Cchhhhhcc--ccCCcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666 889999999 45655567788888888887777777766553
No 50
>PF10361 DUF2434: Protein of unknown function (DUF2434); InterPro: IPR018830 This entry represents a family of proteins conserved in fungi. Their function is not known.
Probab=31.18 E-value=51 Score=26.69 Aligned_cols=45 Identities=16% Similarity=0.036 Sum_probs=29.7
Q ss_pred HHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 62 EHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 62 ~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
--.++|+|.+-+|.+|+-... -+...=...+++.++++||.++..
T Consensus 65 LvnL~KHG~~~lp~eKRf~~i---GRRwqWyW~~fv~a~~~iS~f~~I 109 (296)
T PF10361_consen 65 LVNLRKHGRLYLPLEKRFYPI---GRRWQWYWMLFVCACGLISLFMSI 109 (296)
T ss_pred HHHHHHhhhhcCCchhccccc---chhHHHHHHHHHHHHHHHhhheee
Confidence 457899999999988753333 223333445666778888877653
No 51
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=30.22 E-value=1.2e+02 Score=23.12 Aligned_cols=14 Identities=7% Similarity=0.408 Sum_probs=7.0
Q ss_pred hHHHHHHHHHhhHH
Q psy10302 80 TFLQLVWEALQDVT 93 (125)
Q Consensus 80 s~~~~~l~~f~dp~ 93 (125)
++++.+|+-|..|.
T Consensus 9 ~~~~~~~~~~~k~~ 22 (200)
T PRK10617 9 GLIKRLWKWWRTPS 22 (200)
T ss_pred HHHHHHHHHHHhhH
Confidence 35555555554333
No 52
>PRK10633 hypothetical protein; Provisional
Probab=28.25 E-value=1.8e+02 Score=19.03 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=29.4
Q ss_pred hCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 68 FGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 68 yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
|+++.-+.--.-|.| +++.++--|.+.++++..++-++..++
T Consensus 31 Y~~~~~~~i~GlP~W-F~~sCi~~p~lfi~l~~~~Vk~vFkDi 72 (80)
T PRK10633 31 YLPGNAPGFTGLPHW-FEMACLLLPLLFILLCWLMVKFIFRDI 72 (80)
T ss_pred hccCCCCcccCCcHH-HHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 444444444445555 778888999998888888888886654
No 53
>PTZ00016 aquaglyceroporin; Provisional
Probab=27.91 E-value=82 Score=25.19 Aligned_cols=47 Identities=4% Similarity=-0.014 Sum_probs=32.0
Q ss_pred CCccHHHHHHHHHhhCCCCCCCC-CCchHHHHHHHHHhhHHHHHHHHHHH
Q psy10302 54 LGGSQTDLEHRREVFGSNIIPPK-PSKTFLQLVWEALQDVTLIILEIAAL 102 (125)
Q Consensus 54 Ls~~e~~~~~R~~~yG~N~l~~~-k~~s~~~~~l~~f~dp~i~iLl~aai 102 (125)
++++- ++.-+..+|.+..-++ +.+++++.++..|--.++++++.+++
T Consensus 23 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~laEfigT~llvf~g~g~ 70 (294)
T PTZ00016 23 MDEEV--AEAQKRPPGGQNFWAPREYRPNVREYVAEFLGTFVLLFFGEGV 70 (294)
T ss_pred cCHHH--hhcccCCCCCccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56655 6666777776655544 44778888888888777777766554
No 54
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=27.69 E-value=2e+02 Score=20.41 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=29.9
Q ss_pred CCCCCCccHHHHH-HHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHH
Q psy10302 50 PNEGLGGSQTDLE-HRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIA 100 (125)
Q Consensus 50 ~~~GLs~~e~~~~-~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~a 100 (125)
...|-|++| +. --.++||.=.+-.|+.++.-..+|- -|++++++.+
T Consensus 70 i~~G~sd~e--I~~~~v~RYG~~Vl~~Pp~~~~t~~LW~---~P~~lll~g~ 116 (126)
T PRK10144 70 VAEGKSEVE--IIGWMTERYGDFVRYNPPLTGQTLVLWA---LPVVLLLLMA 116 (126)
T ss_pred HHcCCCHHH--HHHHHHHhcCCeEEecCCCCcchHHHHH---HHHHHHHHHH
Confidence 345888887 65 4667899999887776555444443 4555554443
No 55
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=26.59 E-value=1.9e+02 Score=24.45 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCccHHHHHHHHHhhC---CCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 54 LGGSQTDLEHRREVFG---SNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 54 Ls~~e~~~~~R~~~yG---~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
++++| ..+.+++.| |+.-|-+++..++...+..+.-+-.+.|.+.|++..+++.+
T Consensus 332 ~nP~~--iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP~i~~~~ 389 (434)
T PRK12907 332 VNPEQ--MAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILPLVFTKI 389 (434)
T ss_pred cCHHH--HHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 56666 888888877 56666667778888888888888888888888888877655
No 56
>PF13518 HTH_28: Helix-turn-helix domain
Probab=26.29 E-value=81 Score=17.45 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=23.5
Q ss_pred CCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCC
Q psy10302 37 GGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPS 78 (125)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~ 78 (125)
.+..+++..++.+.. +-.. ..++-+.+|.+.|.+.+.
T Consensus 13 ~s~~~~a~~~gis~~---tv~~--w~~~y~~~G~~~l~~~~~ 49 (52)
T PF13518_consen 13 ESVREIAREFGISRS---TVYR--WIKRYREGGIEGLKPKKR 49 (52)
T ss_pred CCHHHHHHHHCCCHh---HHHH--HHHHHHhcCHHHhccCCC
Confidence 377788888777543 2222 456666778877776554
No 57
>PF06939 DUF1286: Protein of unknown function (DUF1286); InterPro: IPR009705 This entry is represented by Sulfolobus virus STSV1, Orf8. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical archaeal proteins of around 120 residues in length. All members of this family seem to be Sulfolobus species specific. The function of this family is unknown.
Probab=25.92 E-value=1.2e+02 Score=21.15 Aligned_cols=36 Identities=11% Similarity=-0.059 Sum_probs=26.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10302 81 FLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGES 116 (125)
Q Consensus 81 ~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~~~ 116 (125)
.+.++-..|.+.+...|++++++|++-....|.-++
T Consensus 13 lLtLl~s~~~~~f~~al~~s~iiSvl~N~lID~lGH 48 (114)
T PF06939_consen 13 LLTLLSSFFLSNFYDALFLSGIISVLGNTLIDRLGH 48 (114)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 344444445567888899999999998888887776
No 58
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=25.74 E-value=1.5e+02 Score=26.04 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q psy10302 90 QDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 90 ~dp~i~iLl~aaiiS~ilg 108 (125)
+=.+++++++|+++||+.|
T Consensus 481 WIsvAliVLLAaLlSfLtg 499 (538)
T PF05781_consen 481 WISVALIVLLAALLSFLTG 499 (538)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3344566777888888887
No 59
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=24.92 E-value=1.6e+02 Score=27.68 Aligned_cols=42 Identities=14% Similarity=0.054 Sum_probs=29.8
Q ss_pred hhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 67 VFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 67 ~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
+.|.|....+.+.+.+..-+..+.-.+++++++.++++++++
T Consensus 228 k~~~n~~~~~~k~s~le~~ln~~~~~l~~~~i~l~~i~~i~~ 269 (1057)
T TIGR01652 228 KLMRNATQAPSKRSRLEKELNFLIIILFCLLFVLCLISSVGA 269 (1057)
T ss_pred hhhhcCCCCcccccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 457787776777788888888887666666666666666654
No 60
>PF11431 Transport_MerF: Membrane transport protein MerF; InterPro: IPR021091 This entry represents Mercury ion transport protein MerF, which has a core helix-loop-helix domain. It also has two vicinal pairs of cysteine residues which are involved in the transport of Hg(II) across the membrane and are exposed to the cytoplasm []. ; PDB: 1WAZ_A 2LJ2_A 2H3O_A.
Probab=23.99 E-value=1.1e+02 Score=17.95 Aligned_cols=18 Identities=28% Similarity=0.152 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy10302 92 VTLIILEIAALVSLGLSF 109 (125)
Q Consensus 92 p~i~iLl~aaiiS~ilg~ 109 (125)
|+..+|+.+..+|.++|.
T Consensus 2 PiLviL~g~vGLsa~vgy 19 (46)
T PF11431_consen 2 PILVILFGAVGLSALVGY 19 (46)
T ss_dssp HHHHHHHHHHHHHHHHSH
T ss_pred ceehHHHHHhHHHHHHHH
Confidence 778888889899988873
No 61
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=23.86 E-value=2e+02 Score=22.82 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCC
Q psy10302 82 LQLVWEALQDVTLIILEIAALVSLGLSFYHPGGES 116 (125)
Q Consensus 82 ~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~~~ 116 (125)
..++..+-.+..-++|++..+.-+++..|.+.|=+
T Consensus 96 l~r~~~~AaSVvgi~Li~~ti~DlvL~~WDPfGYn 130 (249)
T PF04583_consen 96 LTRIAIAAASVVGIVLIFLTIADLVLMFWDPFGYN 130 (249)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 33445555677778899999999999999988754
No 62
>PHA03255 BDLF3; Provisional
Probab=23.85 E-value=1.2e+02 Score=23.06 Aligned_cols=26 Identities=31% Similarity=0.303 Sum_probs=15.8
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHH
Q psy10302 79 KTFLQLVWEALQDVTLIILEIAALVSL 105 (125)
Q Consensus 79 ~s~~~~~l~~f~dp~i~iLl~aaiiS~ 105 (125)
-++|-+++--+...|+ |||++|.|.+
T Consensus 182 lplwtlvfvgltflml-ilifaagimm 207 (234)
T PHA03255 182 LPLWTLVFVGLTFLML-ILIFAAGLMM 207 (234)
T ss_pred chHHHHHHHHHHHHHH-HHHHHhhHhh
Confidence 4678887777765554 5555555544
No 63
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=23.83 E-value=2.6e+02 Score=20.15 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=27.9
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHH
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTL 94 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i 94 (125)
+...++++...+... .++.+| +.+|+++--.. +++-++|...+...+....+
T Consensus 66 ~l~~v~~l~~~~~~~---~~~~~e--a~~~L~~I~~~---~~~y~~~~~~l~~~l~~~~f 117 (193)
T PF06738_consen 66 KLAAVNRLSRRIVAG---QLSLEE--AIERLDEIDRE---PPRYPPWLVILAAGLASAAF 117 (193)
T ss_pred HHHHHHHHHHHHhcC---CCCHHH--HHHHHHHHhhC---CCCCCHHHHHHHHHHHHHHH
Confidence 444456666666553 678888 88888764321 11233444544444444433
No 64
>PF14164 YqzH: YqzH-like protein
Probab=23.65 E-value=1.7e+02 Score=18.31 Aligned_cols=29 Identities=7% Similarity=0.010 Sum_probs=20.0
Q ss_pred HHHHHHhhCCCCCCCCCCchHHHHHHHHH
Q psy10302 61 LEHRREVFGSNIIPPKPSKTFLQLVWEAL 89 (125)
Q Consensus 61 ~~~R~~~yG~N~l~~~k~~s~~~~~l~~f 89 (125)
+.+-+++||+|.-..|-...=|+.+.+.+
T Consensus 10 i~~~l~QYg~d~~~~pls~~E~~~L~~~i 38 (64)
T PF14164_consen 10 IINCLRQYGYDVECMPLSDEEWEELCKHI 38 (64)
T ss_pred HHHHHHHhCCcccCCCCCHHHHHHHHHHH
Confidence 67788999999666555555666655543
No 65
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=23.07 E-value=1.5e+02 Score=16.37 Aligned_cols=29 Identities=21% Similarity=0.165 Sum_probs=13.8
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 76 KPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
++++|-+..+-. .++++.+++.+.|++++
T Consensus 3 kkkKS~fekiT~----v~v~lM~i~tvg~v~~~ 31 (35)
T PF13253_consen 3 KKKKSTFEKITM----VVVWLMLILTVGSVVAS 31 (35)
T ss_pred CccccHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 445555554433 44444444444444443
No 66
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=23.00 E-value=1e+02 Score=19.89 Aligned_cols=15 Identities=27% Similarity=0.620 Sum_probs=9.9
Q ss_pred ccCCCHHHHHHHHHh
Q psy10302 10 QYGITLRQLRELMEV 24 (125)
Q Consensus 10 ~f~~~~~~l~~~~~~ 24 (125)
++.|+.++|..++..
T Consensus 26 g~~Is~~EL~~ll~~ 40 (93)
T cd05026 26 RYKLSKGELKELLQR 40 (93)
T ss_pred CCEECHHHHHHHHHH
Confidence 455777777777754
No 67
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=22.73 E-value=1.1e+02 Score=21.82 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=21.8
Q ss_pred CchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccCCCCCcc
Q psy10302 78 SKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHPGGESEH 118 (125)
Q Consensus 78 ~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~~~~~~~ 118 (125)
+.++.+.+.....-....++++++++......+....++|+
T Consensus 90 ~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~Rn~~ 130 (156)
T PF08019_consen 90 KRSWKRELLRRLLLILLSLLVIAGIAFLFYKDYASFFRNHK 130 (156)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhchH
Confidence 34555555555554444455555555555555655555554
No 68
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=22.68 E-value=1.7e+02 Score=21.73 Aligned_cols=9 Identities=11% Similarity=0.741 Sum_probs=4.2
Q ss_pred chHHHHHHH
Q psy10302 79 KTFLQLVWE 87 (125)
Q Consensus 79 ~s~~~~~l~ 87 (125)
..++++|++
T Consensus 29 ~R~i~l~~R 37 (161)
T PHA02673 29 RRYIKLFFR 37 (161)
T ss_pred HHHHHHHHH
Confidence 344555444
No 69
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=22.23 E-value=3.1e+02 Score=22.88 Aligned_cols=63 Identities=22% Similarity=0.221 Sum_probs=42.6
Q ss_pred HHhCCCCCCCCCccHHHHHHHHHhhCC---CCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 44 KKLYTSPNEGLGGSQTDLEHRREVFGS---NIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 44 ~~l~t~~~~GLs~~e~~~~~R~~~yG~---N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
..+-+. .++++++ +.++.++-|. +.-|.+....++...+..+.-+=.+.|.+.|++..+++.+
T Consensus 308 s~f~~~--~~~~p~~--iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~ 373 (410)
T TIGR00967 308 SFFYVE--LQLNPED--MAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAI 373 (410)
T ss_pred HHHHHH--HccCHHH--HHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 3788877 8988888773 3333444466777777777766677777788887777655
No 70
>PF04834 Adeno_E3_14_5: Early E3 14.5 kDa protein; InterPro: IPR008131 The E3B 14.5 kDa was first identified in human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein [, ]. ; GO: 0009966 regulation of signal transduction, 0016021 integral to membrane
Probab=22.07 E-value=1.1e+02 Score=20.74 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCcccc
Q psy10302 94 LIILEIAALVSLGLSFYHPGGESEHDN 120 (125)
Q Consensus 94 i~iLl~aaiiS~ilg~~~~~~~~~~~~ 120 (125)
+.++.++.++++.+.-..+.||++-..
T Consensus 30 ~~~v~~~t~~~l~iYp~f~~gWn~~~~ 56 (97)
T PF04834_consen 30 IVLVFCSTFFSLAIYPCFDFGWNHPFA 56 (97)
T ss_pred HHHHHHHHHHHHhhhheeeccccCccc
Confidence 355566777888888888889887543
No 71
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=22.03 E-value=41 Score=16.00 Aligned_cols=12 Identities=42% Similarity=0.664 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHH
Q psy10302 94 LIILEIAALVSL 105 (125)
Q Consensus 94 i~iLl~aaiiS~ 105 (125)
++||++.-++||
T Consensus 5 vIIlvvLLliSf 16 (19)
T PF13956_consen 5 VIILVVLLLISF 16 (19)
T ss_pred hHHHHHHHhccc
Confidence 456666666665
No 72
>PF11198 DUF2857: Protein of unknown function (DUF2857); InterPro: IPR021364 This is a bacterial family of uncharacterised proteins.
Probab=22.02 E-value=3.1e+02 Score=20.19 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=34.2
Q ss_pred cCCCHHHHHHHHHhcCh-----hhHHHHHhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCC
Q psy10302 11 YGITLRQLRELMEVRGR-----EGIAKINEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIP 74 (125)
Q Consensus 11 f~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~ 74 (125)
+.|..+.|..++..-.. .-++..-.++..-++...| -|||..| +..||+.-|-..-.
T Consensus 56 i~in~~~l~~~L~~~~~~~~~~~~idr~L~lGAS~~mm~~~-----FGls~~e--v~~rR~llgi~~~~ 117 (180)
T PF11198_consen 56 ISINHDVLWRLLEQARREQQEQQLIDRALRLGASIEMMQRL-----FGLSSAE--VAARRRLLGIPVRK 117 (180)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH-----HCCCHHH--HHHHHHHhCCCCCC
Confidence 46666777777653211 1222233455555555544 3999988 99999987766443
No 73
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=21.98 E-value=68 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.389 Sum_probs=17.0
Q ss_pred CCCCccHHHHHHHHHhhCCCCCCC
Q psy10302 52 EGLGGSQTDLEHRREVFGSNIIPP 75 (125)
Q Consensus 52 ~GLs~~e~~~~~R~~~yG~N~l~~ 75 (125)
.|++.++ +.+.+++|-.|.+|+
T Consensus 53 ~G~~~e~--i~~~L~~~S~~~lP~ 74 (129)
T PF13625_consen 53 AGLTAEE--IIEFLERYSKNPLPQ 74 (129)
T ss_pred cCCCHHH--HHHHHHHHcCCCCCH
Confidence 4888877 888888888887764
No 74
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.45 E-value=2.1e+02 Score=17.45 Aligned_cols=35 Identities=26% Similarity=0.299 Sum_probs=18.9
Q ss_pred hCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 68 FGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 68 yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
-|.|..+.++-++|..+++ ++.+.+..+.+|-+++
T Consensus 18 a~~~~VER~PFrP~~Ll~~------li~Vv~gl~llS~ll~ 52 (55)
T PF11293_consen 18 AGVNQVERKPFRPWRLLIV------LIVVVIGLGLLSRLLS 52 (55)
T ss_pred CCCCccccCCcchHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3888888777666553321 2334444455555443
No 75
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=21.03 E-value=66 Score=18.79 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHhhh
Q psy10302 94 LIILEIAALVSLGLSF 109 (125)
Q Consensus 94 i~iLl~aaiiS~ilg~ 109 (125)
+++|++.++||+-+-.
T Consensus 7 llLlfflG~ISlSlCe 22 (46)
T PF03032_consen 7 LLLLFFLGTISLSLCE 22 (46)
T ss_pred HHHHHHHHHcccchHH
Confidence 4566677888877653
No 76
>PF12615 TraD_N: F sex factor protein N terminal; InterPro: IPR022585 This domain of unknown function is found in bacteria, and is typically between 96 and 107 amino acids in length. It is probably periplasmic and is found N-terminal to the DNA binding domain PF10412 from PFAM. TraD is a hexameric ring ATPase that is part of the bacterial F sex factor complex and involved in bacterial conjugation [], [], [].
Probab=20.54 E-value=2.5e+02 Score=18.52 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=22.9
Q ss_pred chHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 79 KTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 79 ~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
+++..-.-++|.+.+.+-.+++++++++++.
T Consensus 70 ~~~~~~~~~~~~~~l~~~al~a~~i~~~~~~ 100 (101)
T PF12615_consen 70 DPYMVDCGDQFWQELQISALIAGVISFAVFF 100 (101)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3455555688888888888888888887653
No 77
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=20.23 E-value=2.4e+02 Score=17.82 Aligned_cols=23 Identities=13% Similarity=0.361 Sum_probs=11.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHH
Q psy10302 84 LVWEALQDVTLIILEIAALVSLG 106 (125)
Q Consensus 84 ~~l~~f~dp~i~iLl~aaiiS~i 106 (125)
..|+.++-.++++++++.++.++
T Consensus 61 ~~~~~~k~~~i~~~iv~~~~~~i 83 (89)
T PF00957_consen 61 MWWRNYKLYIIIIIIVIIIILII 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhhhhhhhHH
Confidence 34455555555555555444444
No 78
>PF14927 Neurensin: Neurensin
Probab=20.15 E-value=1.5e+02 Score=21.35 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCcc
Q psy10302 92 VTLIILEIAALVSLGLSFYHPGGESEH 118 (125)
Q Consensus 92 p~i~iLl~aaiiS~ilg~~~~~~~~~~ 118 (125)
..-.++++++++.+.+|...+...+..
T Consensus 49 i~g~l~Ll~Gi~~l~vgY~vP~~~e~~ 75 (140)
T PF14927_consen 49 ISGLLLLLLGIVALTVGYLVPPKIEVF 75 (140)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcceec
Confidence 344667778888888887766444433
No 79
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=20.13 E-value=1.3e+02 Score=18.82 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy10302 94 LIILEIAALVSLGLSFY 110 (125)
Q Consensus 94 i~iLl~aaiiS~ilg~~ 110 (125)
+.+.+++|+|.+.+|.+
T Consensus 7 iQii~l~AlI~~pLGyl 23 (62)
T PF11120_consen 7 IQIIILCALIFFPLGYL 23 (62)
T ss_pred HHHHHHHHHHHHhHHHH
Confidence 45667888888888754
No 80
>PF10582 Connexin_CCC: Gap junction channel protein cysteine-rich domain; InterPro: IPR019570 The connexins are a family of integral membrane proteins that oligomerise to form intercellular channels that are clustered at gap junctions. These channels are specialised sites of cell-cell contact that allow the passage of ions, intracellular metabolites and messenger molecules (with molecular weight less than 1-2kDa) from the cytoplasm of one cell to its opposing neighbours. They are found in almost all vertebrate cell types, and somewhat similar proteins have been cloned from plant species. Invertebrates utilise a different family of molecules, innexins, that share a similar predicted secondary structure to the vertebrate connexins, but have no sequence identity to them []. Vertebrate gap junction channels are thought to participate in diverse biological functions. For instance, in the heart they permit the rapid cell-cell transfer of action potentials, ensuring coordinated contraction of the cardiomyocytes. They are also responsible for neurotransmission at specialised 'electrical' synapses. In non-excitable tissues, such as the liver, they may allow metabolic cooperation between cells. In the brain, glial cells are extensively-coupled by gap junctions; this allows waves of intracellular Ca2+ to propagate through nervous tissue, and may contribute to their ability to spatially-buffer local changes in extracellular K+ concentration []. The connexin protein family is encoded by at least 13 genes in rodents, with many homologues cloned from other species. They show overlapping tissue expression patterns, most tissues expressing more than one connexin type. Their conductances, permeability to different molecules, phosphorylation and voltage-dependence of their gating, have been found to vary. Possible communication diversity is increased further by the fact that gap junctions may be formed by the association of different connexin isoforms from apposing cells. However, in vitro studies have shown that not all possible combinations of connexins produce active channels [, ]. Hydropathy analysis predicts that all cloned connexins share a common transmembrane (TM) topology. Each connexin is thought to contain 4 TM domains, with two extracellular and three cytoplasmic regions. This model has been validated for several of the family members by in vitro biochemical analysis. Both N- and C-termini are thought to face the cytoplasm, and the third TM domain has an amphipathic character, suggesting that it contributes to the lining of the formed-channel. Amino acid sequence identity between the isoforms is ~50-80%, with the TM domains being well conserved. Both extracellular loops contain characteristically conserved cysteine residues, which likely form intramolecular disulphide bonds. By contrast, the single putative intracellular loop (between TM domains 2 and 3) and the cytoplasmic C terminus are highly variable among the family members. Six connexins are thought to associate to form a hemi-channel, or connexon. Two connexons then interact (likely via the extracellular loops of their connexins) to form the complete gap junction channel. NH2-*** *** *************-COOH ** ** ** ** ** ** ** ** Cytoplasmic ---**----**-----**----**---------------- ** ** ** ** Membrane ** ** ** ** ---**----**-----**----**---------------- ** ** ** ** Extracellular ** ** ** ** ** ** Two sets of nomenclature have been used to identify the connexins. The first, and most commonly used, classifies the connexin molecules according to molecular weight, such as connexin43 (abbreviated to Cx43), indicating a connexin of molecular weight close to 43kDa. However, studies have revealed cases where clear functional homologues exist across species that have quite different molecular masses; therefore, an alternative nomenclature was proposed based on evolutionary considerations, which divides the family into two major subclasses, alpha and beta, each with a number of members []. Due to their ubiquity and overlapping tissue distributions, it has proved difficult to elucidate the functions of individual connexin isoforms. To circumvent this problem, particular connexin-encoding genes have been subjected to targeted-disruption in mice, and the phenotype of the resulting animals investigated. Around half the connexin isoforms have been investigated in this manner []. Further insight into the functional roles of connexins has come from the discovery that a number of human diseases are caused by mutations in connexin genes. For instance, mutations in Cx32 give rise to a form of inherited peripheral neuropathy called X-linked dominant Charcot-Marie-Tooth disease []. Similarly, mutations in Cx26 are responsible for both autosomal recessive and dominant forms of nonsyndromic deafness, a disorder characterised by hearing loss, with no apparent effects on other organ systems. This entry represents the cysteine rich domain of the connexins.; PDB: 2ZW3_F.
Probab=20.03 E-value=1.6e+02 Score=18.45 Aligned_cols=19 Identities=26% Similarity=0.328 Sum_probs=13.2
Q ss_pred hHHHHHHHHHHHHHHHhhh
Q psy10302 91 DVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 91 dp~i~iLl~aaiiS~ilg~ 109 (125)
+.+++...+.+++|++++.
T Consensus 43 tIfl~fM~~~s~vsi~L~l 61 (67)
T PF10582_consen 43 TIFLIFMFAVSCVSILLNL 61 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 4556666777788887764
Done!