Query psy10302
Match_columns 125
No_of_seqs 186 out of 1079
Neff 6.7
Searched_HMMs 29240
Date Fri Aug 16 23:04:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.5 1.1E-13 3.8E-18 123.4 9.0 75 34-110 53-127 (1034)
2 2zxe_A Na, K-ATPase alpha subu 99.4 1.6E-13 5.5E-18 122.4 7.1 76 34-111 48-123 (1028)
3 3ar4_A Sarcoplasmic/endoplasmi 99.4 3.6E-13 1.2E-17 119.6 8.4 76 34-111 5-80 (995)
4 3b8c_A ATPase 2, plasma membra 99.1 1.2E-12 4E-17 115.6 -6.3 70 35-108 15-84 (885)
5 1mhs_A Proton pump, plasma mem 99.1 4.6E-11 1.6E-15 105.9 3.7 67 43-112 77-143 (920)
6 2knc_A Integrin alpha-IIB; tra 54.0 30 0.001 20.1 6.5 30 74-103 5-34 (54)
7 2w84_A Peroxisomal membrane pr 35.2 26 0.00091 21.5 2.4 33 37-74 33-65 (70)
8 4aw6_A CAAX prenyl protease 1 35.2 51 0.0018 27.1 4.9 39 65-109 150-188 (482)
9 1irz_A ARR10-B; helix-turn-hel 31.0 56 0.0019 19.5 3.3 27 37-68 30-56 (64)
10 1bax_A M-PMV MA, M-PMV matrix 25.2 76 0.0026 20.5 3.4 74 15-91 12-92 (94)
11 2wwb_A Protein transport prote 24.3 2.3E+02 0.008 23.1 7.0 54 52-108 383-439 (476)
12 2l8s_A Integrin alpha-1; trans 21.7 1.3E+02 0.0043 17.4 3.9 27 76-102 4-30 (54)
13 2k1a_A Integrin alpha-IIB; sin 20.4 1.2E+02 0.004 16.5 4.2 25 76-100 5-29 (42)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.46 E-value=1.1e-13 Score=123.36 Aligned_cols=75 Identities=20% Similarity=0.088 Sum_probs=70.6
Q ss_pred HhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhc
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFY 110 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~ 110 (125)
+|..+++++++.|+|++.+|||++| |++|+++||+|++++++++++|++|++||++|++++|+++|++|++++.+
T Consensus 53 ~~~~~~~~~~~~l~~~~~~GLs~~e--a~~rl~~~G~N~l~~~~~~~~~~~~~~q~~~~~~~il~~aa~~~~~~~~~ 127 (1034)
T 3ixz_A 53 DHQLSVAELEQKYQTSATKGLSASL--AAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAI 127 (1034)
T ss_pred hhhCCHHHHHHHhCCCcccCCCHHH--HHHHHHhhCCCCCCCCCCCCHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999988999999 99999999999999999999999999999999999999999999987644
No 2
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.42 E-value=1.6e-13 Score=122.38 Aligned_cols=76 Identities=18% Similarity=0.120 Sum_probs=70.6
Q ss_pred HhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~ 111 (125)
+|..+++++++.|+++..+|||++| +++|+++||+|++++++++++|++|++||++||+++|++++++|++++.+.
T Consensus 48 ~~~~~~~~~~~~l~t~~~~GLs~~e--~~~r~~~~G~N~l~~~~~~~~~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~ 123 (1028)
T 2zxe_A 48 DHKLSLDELHNKYGTDLTRGLTNAR--AKEILARDGPNSLTPPPTTPEWIKFCRQLFGGFSILLWIGAILCFLAYGIQ 123 (1028)
T ss_dssp CSSSCHHHHHHHHTCCSSSCBCHHH--HHHHHHHHCCSCCCCCCCCCHHHHHHTTTTSTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCCHHHHHHHhCcCccCCCCHHH--HHHHHHhcCCCCCCCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhh
Confidence 3578999999999999878999998 999999999999999999999999999999999999999999999987553
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.41 E-value=3.6e-13 Score=119.57 Aligned_cols=76 Identities=26% Similarity=0.394 Sum_probs=71.0
Q ss_pred HhhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Q psy10302 34 NEYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYH 111 (125)
Q Consensus 34 ~~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~ 111 (125)
+|..+++++++.|+++..+|||++| +++|+++||+|+++.++++++|++|++||++|++++|++++++|++++.+.
T Consensus 5 ~~~~~~~~~~~~l~~~~~~GLs~~e--~~~r~~~~G~N~l~~~~~~~~~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~ 80 (995)
T 3ar4_A 5 AHSKSTEECLAYFGVSETTGLTPDQ--VKRHLEKYGHNELPAEEGKSLWELVIEQFEDLLVRILLLAACISFVLAWFE 80 (995)
T ss_dssp GGGSCHHHHHHHHTCCTTTCBCHHH--HHHHHHHHCCSSCCCCCCCCHHHHHHGGGCSHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhCCHHHHHHHhCCCcccCCCHHH--HHHHHHhcCCCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3678999999999999888999988 999999999999999999999999999999999999999999999987653
No 4
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.08 E-value=1.2e-12 Score=115.62 Aligned_cols=70 Identities=26% Similarity=0.351 Sum_probs=63.7
Q ss_pred hhCCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 35 EYGGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 35 ~~~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
+..+.+++++.|+++ .+|||++| +++|+++||+|++++++ .++|+.|++||+||++++|++++++|++++
T Consensus 15 ~~~~~~~~~~~l~~~-~~GLs~~e--~~~r~~~~G~N~l~~~~-~~~~~~~l~~~~~p~~~il~~aaiis~~l~ 84 (885)
T 3b8c_A 15 EKIPIEEVFQQLKCS-REGLTTQE--GEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALA 84 (885)
T ss_dssp SSSSTTCCTTTSSSC-SSCSTHHH--HHHHSSSCCSCCTTTTC-CCTTSSTTSCCCGGGSSHHHHHHHGGGGSS
T ss_pred HhCCHHHHHHHhCCC-CCCCCHHH--HHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557888999999998 46999998 99999999999999877 678889999999999999999999999887
No 5
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.08 E-value=4.6e-11 Score=105.87 Aligned_cols=67 Identities=19% Similarity=0.246 Sum_probs=59.4
Q ss_pred HHHhCCCCCCCCCccHHHHHHHHHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhhccC
Q psy10302 43 CKKLYTSPNEGLGGSQTDLEHRREVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSFYHP 112 (125)
Q Consensus 43 ~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~~~~ 112 (125)
.+.|+++..+|||++| +++|+++||+|++++++ .++|..|+.+|++|+.++|++++++++++|.|.+
T Consensus 77 ~~~l~t~~~~GLs~~e--a~~r~~~~G~N~l~~~~-~~~~~~~l~~f~~~~~~ll~~aai~s~~~g~~~~ 143 (920)
T 1mhs_A 77 EDMLQTDTRVGLTSEE--VVQRRRKYGLNQMKEEK-ENHFLKFLGFFVGPIQFVMEGAAVLAAGLEDWVD 143 (920)
T ss_dssp STTTTTCCCCCCCSHH--HHHHHHHTSSSSCCCCC-CSSHHHHTHHHHHHHHHHHHHHHHHCTTCSCSSH
T ss_pred HHHhCCCcCCCCCHHH--HHHHHHhcCCCccCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4568888778999998 99999999999999765 6788999999999999999999999998887654
No 6
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=53.98 E-value=30 Score=20.10 Aligned_cols=30 Identities=10% Similarity=0.130 Sum_probs=19.0
Q ss_pred CCCCCchHHHHHHHHHhhHHHHHHHHHHHH
Q psy10302 74 PPKPSKTFLQLVWEALQDVTLIILEIAALV 103 (125)
Q Consensus 74 ~~~k~~s~~~~~l~~f~dp~i~iLl~aaii 103 (125)
+.+...++|.+++..+-..+++.|++.+.-
T Consensus 5 ~~~~~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 5 SEERAIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889888877766665555554443
No 7
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=35.22 E-value=26 Score=21.48 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=23.3
Q ss_pred CCHHHHHHHhCCCCCCCCCccHHHHHHHHHhhCCCCCC
Q psy10302 37 GGVPEICKKLYTSPNEGLGGSQTDLEHRREVFGSNIIP 74 (125)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~yG~N~l~ 74 (125)
.+.+.=...|.+ +||+++| ++.-+++-|.+.-.
T Consensus 33 sp~~~K~~FL~s---KGLt~eE--I~~Al~ra~~~~~~ 65 (70)
T 2w84_A 33 SPLATRRAFLKK---KGLTDEE--IDMAFQQSGTAADE 65 (70)
T ss_dssp SCHHHHHHHHHH---TTCCHHH--HHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHH---cCCCHHH--HHHHHHHccCCCCC
Confidence 345555566665 3999999 88888888766544
No 8
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=35.19 E-value=51 Score=27.06 Aligned_cols=39 Identities=18% Similarity=0.121 Sum_probs=23.2
Q ss_pred HHhhCCCCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhhh
Q psy10302 65 REVFGSNIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLSF 109 (125)
Q Consensus 65 ~~~yG~N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg~ 109 (125)
-++||-|+.+ +...+.++++...+-+++.+-+++.++..
T Consensus 150 e~~~Gfnk~t------~~~f~~D~~k~~~l~~vi~~pl~~~~~~i 188 (482)
T 4aw6_A 150 EEKHGFNQQT------LGFFMKDAIKKFVVTQCILLPVSSLLLYI 188 (482)
T ss_dssp HHHTTCBCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999632 33355666666666555555555555443
No 9
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=30.99 E-value=56 Score=19.52 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=21.9
Q ss_pred CCHHHHHHHhCCCCCCCCCccHHHHHHHHHhh
Q psy10302 37 GGVPEICKKLYTSPNEGLGGSQTDLEHRREVF 68 (125)
Q Consensus 37 ~~~~~l~~~l~t~~~~GLs~~e~~~~~R~~~y 68 (125)
..+..+++..++. |||... |+.++++|
T Consensus 30 AtPk~Il~~M~v~---gLT~~~--VkSHLQKY 56 (64)
T 1irz_A 30 AVPKKILDLMNVD---KLTREN--VASHLQKF 56 (64)
T ss_dssp CCHHHHHHHHCCT---TCCHHH--HHHHHHHH
T ss_pred CCcHHHHHHcCCC---CCCHHH--HHHHHHHH
Confidence 3466788888763 999998 99999988
No 10
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=25.24 E-value=76 Score=20.47 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=40.4
Q ss_pred HHHHHHHHHhcChhh-HHHHH-hhCCHHHHHHHhCCCCCCCCCccH-----HHHHHHHHhhCCCCCCCCCCchHHHHHHH
Q psy10302 15 LRQLRELMEVRGREG-IAKIN-EYGGVPEICKKLYTSPNEGLGGSQ-----TDLEHRREVFGSNIIPPKPSKTFLQLVWE 87 (125)
Q Consensus 15 ~~~l~~~~~~~~~~~-~~~~~-~~~~~~~l~~~l~t~~~~GLs~~e-----~~~~~R~~~yG~N~l~~~k~~s~~~~~l~ 87 (125)
...|..+++.|.... ...+. -+.-+++++.-+..+- .|+-.. .+....-+.+|++.+|.. .-++|.++.+
T Consensus 12 i~~lk~lLk~RgIkVkk~~L~~Ff~fi~~~cPWFp~eG--tl~l~~W~kVG~~L~~~~~~~g~~~ip~~-~f~~W~lIrd 88 (94)
T 1bax_A 12 VEQLKQALKTRGVKVKYADLLKFFDFVKDTCPWFPQEG--TIDIKRWRRVGDCFQDYYNTFGPEKVPVT-AFSYWNLIKE 88 (94)
T ss_pred HHHHHHHHHHcCeeecHHHHHHHHHHHHHhCCCcCcCC--cccHHHHHHHHHHHHHHHHHcCCCcCCcc-hHHHHHHHHH
Confidence 355677777665431 11222 2233455554454432 233321 124555566899999965 6689988887
Q ss_pred HHhh
Q psy10302 88 ALQD 91 (125)
Q Consensus 88 ~f~d 91 (125)
.+.+
T Consensus 89 ~Le~ 92 (94)
T 1bax_A 89 LIDK 92 (94)
T ss_pred Hhcc
Confidence 7643
No 11
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=24.27 E-value=2.3e+02 Score=23.08 Aligned_cols=54 Identities=6% Similarity=-0.081 Sum_probs=37.7
Q ss_pred CCCCccHHHHHHHHHhhCC---CCCCCCCCchHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Q psy10302 52 EGLGGSQTDLEHRREVFGS---NIIPPKPSKTFLQLVWEALQDVTLIILEIAALVSLGLS 108 (125)
Q Consensus 52 ~GLs~~e~~~~~R~~~yG~---N~l~~~k~~s~~~~~l~~f~dp~i~iLl~aaiiS~ilg 108 (125)
+|++.++ ++++.++.|- ..-| ++...++...+..+.-+=.+.|.+.|++..+++
T Consensus 383 ~g~np~d--vA~~Lkk~G~~IpGiRp-~~T~~yL~~vi~rit~~Ga~~l~~lavlp~~l~ 439 (476)
T 2wwb_A 383 SGSSAKD--VAKQLKEQQMVMRGHRE-TSMVHELNRYIPTAAAFGGLCIGALSVLADFLG 439 (476)
T ss_dssp SSCCHHH--HHHHHHHHCTTTCCCCT-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hCCCHHH--HHHHHHHcCCccCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3889987 9999999983 3333 456667777777777666666666666666654
No 12
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=21.73 E-value=1.3e+02 Score=17.41 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=16.9
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHHHH
Q psy10302 76 KPSKTFLQLVWEALQDVTLIILEIAAL 102 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i~iLl~aai 102 (125)
+...++|.+++..+-..+++.|++.+.
T Consensus 4 ~~~vp~WiIi~svl~GLLLL~Lii~~L 30 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGLLLLMLLILAL 30 (54)
T ss_dssp CCCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888777776655555544443
No 13
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=20.37 E-value=1.2e+02 Score=16.53 Aligned_cols=25 Identities=8% Similarity=0.122 Sum_probs=15.0
Q ss_pred CCCchHHHHHHHHHhhHHHHHHHHH
Q psy10302 76 KPSKTFLQLVWEALQDVTLIILEIA 100 (125)
Q Consensus 76 ~k~~s~~~~~l~~f~dp~i~iLl~a 100 (125)
....++|.+++..+-..+++.|++.
T Consensus 5 ~~~vp~wiIi~s~l~GLllL~li~~ 29 (42)
T 2k1a_A 5 ERAIPIWWVLVGVLGGLLLLTILVL 29 (42)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHHHHHHH
Confidence 3456788887776665554444433
Done!